Diff of the two buildlogs: -- --- b1/build.log 2024-11-09 06:32:32.564930073 +0000 +++ b2/build.log 2024-11-09 07:30:46.320239830 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Dec 12 00:44:13 -12 2025 -I: pbuilder-time-stamp: 1765543453 +I: Current time: Sat Nov 9 20:32:37 +14 2024 +I: pbuilder-time-stamp: 1731133957 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking veryfasttree_4.0.4+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/408999/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3940975/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 9 06:33 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3940975/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3940975/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='87901acd0a75482e9874f5c9b401802b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='408999' - PS1='# ' - PS2='> ' + INVOCATION_ID=aa098e28583f410dadda18ec02ac782f + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3940975 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eB8YHzxx/pbuilderrc_kBHj --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eB8YHzxx/b1 --logfile b1/build.log veryfasttree_4.0.4+dfsg-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eB8YHzxx/pbuilderrc_Sgpr --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eB8YHzxx/b2 --logfile b2/build.log veryfasttree_4.0.4+dfsg-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/408999/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3940975/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -178,7 +210,7 @@ Get: 57 http://deb.debian.org/debian trixie/main amd64 libxxhash-dev amd64 0.8.2-2+b2 [79.4 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 robin-map-dev all 1.3.0-1 [29.8 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 48.8 MB in 11s (4377 kB/s) +Fetched 48.8 MB in 5s (10.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) @@ -429,7 +461,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/veryfasttree-4.0.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../veryfasttree_4.0.4+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/3940975/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3940975/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/veryfasttree-4.0.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../veryfasttree_4.0.4+dfsg-1_source.changes dpkg-buildpackage: info: source package veryfasttree dpkg-buildpackage: info: source version 4.0.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -471,8 +507,8 @@ -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (7.7s) --- Generating done (0.0s) +-- Configuring done (15.5s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -502,8 +538,8 @@ -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (2.7s) --- Generating done (0.0s) +-- Configuring done (11.3s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -533,8 +569,8 @@ -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (2.3s) --- Generating done (0.0s) +-- Configuring done (10.3s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -564,8 +600,8 @@ -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (2.2s) --- Generating done (0.0s) +-- Configuring done (10.2s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -595,8 +631,8 @@ -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (2.9s) --- Generating done (0.0s) +-- Configuring done (8.7s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -617,7 +653,7 @@ dh_auto_build --builddirectory build_${SIMD} && \ mv build_${SIMD}/VeryFastTree build_${SIMD}/VeryFastTree-${SIMD} ; \ done - cd build_avx512f && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_avx512f && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx512f' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.4+dfsg -B/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx512f --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx512f/CMakeFiles /build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx512f//CMakeFiles/progress.marks @@ -629,35 +665,35 @@ make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx512f' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx512f' +[ 6%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp +[ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp +[ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp [ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -[ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -[ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -[ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o +[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 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CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatCuda.cpp +[ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp +[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG 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Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/VeryFastTree.cpp +[ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/Alignment.cpp +[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o +[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/DiskMemory.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, @@ -668,21 +704,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:3: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -695,21 +731,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:3: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -722,21 +758,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:4: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -749,21 +785,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:4: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -776,21 +812,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:3: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:4: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -830,21 +866,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:4: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -857,94 +893,94 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:3: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::AVX256Operations]', @@ -1019,6 +1055,78 @@ /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::AVX512Operations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, @@ -1091,6 +1199,78 @@ /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX512Operations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, @@ -1163,75 +1343,75 @@ /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ @@ -1307,150 +1487,6 @@ /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -Wl,-z,relro -Wl,-z,now CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a @@ -1459,7 +1495,7 @@ make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx512f' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx512f/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx512f' - cd build_avx2 && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_avx2 && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx2' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.4+dfsg -B/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx2/CMakeFiles /build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx2//CMakeFiles/progress.marks @@ -1479,28 +1515,28 @@ [ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o [ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp -[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -[ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp +[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF 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CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp -[ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o +[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatCuda.cpp +[ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp +[ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o +[ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o +[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp -[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/Knuth.cpp [ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -[ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d 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CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/Alignment.cpp +[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/VeryFastTree.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/main.cpp -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/DiskMemory.cpp In file included from /usr/include/x86_64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43, @@ -1510,21 +1546,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1537,21 +1573,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:3: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1564,21 +1600,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:3: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1591,21 +1627,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:3: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1618,21 +1654,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:3: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1663,147 +1699,75 @@ /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ @@ -1951,75 +1915,75 @@ /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ @@ -2095,6 +2059,78 @@ /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -Wl,-z,relro -Wl,-z,now CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a @@ -2103,7 +2139,7 @@ make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx2' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx2/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx2' - cd build_avx && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_avx && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.4+dfsg -B/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx/CMakeFiles /build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx//CMakeFiles/progress.marks @@ -2115,34 +2151,34 @@ make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx' -[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -[ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -[ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -[ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -[ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp -[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include 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CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp +[ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp -[ 87%] Building CXX 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/Alignment.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/VeryFastTree.cpp +[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/Alignment.cpp [ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/14/bits/c++allocator.h:33, @@ -2154,21 +2190,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:3: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:3: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -2181,21 +2217,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:3: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -2208,21 +2244,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:3: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -2235,21 +2271,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -2262,21 +2298,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -2289,24 +2325,96 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, @@ -2379,76 +2487,76 @@ /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::AVX256Operations]', @@ -2523,78 +2631,6 @@ /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, @@ -2667,75 +2703,75 @@ /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::AVX256Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ @@ -2747,7 +2783,7 @@ make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_avx' - cd build_sse4_1 && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_sse4_1 && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse4_1' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.4+dfsg -B/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse4_1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse4_1/CMakeFiles /build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse4_1//CMakeFiles/progress.marks @@ -2759,31 +2795,31 @@ make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse4_1' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse4_1' -[ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -[ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o +[ 6%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o +[ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp +[ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp -[ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/DiskMemory.cpp -[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -[ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF 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CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp +[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o +[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include 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-ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp +[ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o +[ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o +[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/Knuth.cpp +[ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/DiskMemory.cpp +[ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/main.cpp [ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/Alignment.cpp @@ -2798,21 +2834,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:3: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:3: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -2825,21 +2861,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:3: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:3: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -2897,78 +2933,6 @@ /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, @@ -3041,76 +3005,76 @@ /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', @@ -3185,6 +3149,78 @@ /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -Wl,-z,relro -Wl,-z,now CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a @@ -3193,7 +3229,7 @@ make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse4_1' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse4_1/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse4_1' - cd build_sse2 && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_sse2 && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse2' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.4+dfsg -B/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse2/CMakeFiles /build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse2//CMakeFiles/progress.marks @@ -3205,35 +3241,35 @@ make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse2' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/build_sse2' -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -[ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp +[ 6%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp -[ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -[ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG 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-I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp +[ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o +[ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include 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-DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/Alignment.cpp +[ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o +[ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/Knuth.cpp +[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/VeryFastTree.cpp +[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/Alignment.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, @@ -3244,21 +3280,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:3: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:3: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -3271,21 +3307,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:3: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:3: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -3298,21 +3334,21 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -3325,94 +3361,94 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', @@ -3487,6 +3523,78 @@ /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ +In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, + inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] + 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); + | ^~~~ +In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', + inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: +/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' + 16 | codes = new char[nPos]; + | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::SSE128Operations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, @@ -3559,78 +3667,6 @@ /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ -In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, - inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void []' [-Warray-bounds=] - 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); - | ^~~~ -In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::SSE128Operations]', - inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: -/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 9223372036854775807] allocated by 'operator new []' - 16 | codes = new char[nPos]; - | ^~~~~~~~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -Wl,-z,relro -Wl,-z,now CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a @@ -3666,8 +3702,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'veryfasttree-dbgsym' in '../veryfasttree-dbgsym_4.0.4+dfsg-1_amd64.deb'. dpkg-deb: building package 'veryfasttree' in '../veryfasttree_4.0.4+dfsg-1_amd64.deb'. +dpkg-deb: building package 'veryfasttree-dbgsym' in '../veryfasttree-dbgsym_4.0.4+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../veryfasttree_4.0.4+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../veryfasttree_4.0.4+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3675,12 +3711,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3940975/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3940975/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/408999 and its subdirectories -I: Current time: Fri Dec 12 00:55:31 -12 2025 -I: pbuilder-time-stamp: 1765544131 +I: removing directory /srv/workspace/pbuilder/3940975 and its subdirectories +I: Current time: Sat Nov 9 21:30:45 +14 2024 +I: pbuilder-time-stamp: 1731137445