Diff of the two buildlogs: -- --- b1/build.log 2024-12-18 04:03:47.963093148 +0000 +++ b2/build.log 2024-12-18 04:20:22.741915987 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jan 19 22:20:26 -12 2026 -I: pbuilder-time-stamp: 1768904426 +I: Current time: Wed Dec 18 18:03:51 +14 2024 +I: pbuilder-time-stamp: 1734494631 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -42,52 +42,84 @@ dpkg-source: info: applying missing_include.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3088200/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2728569/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 18 04:04 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2728569/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2728569/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='7fd1c9c123ab4d0ea7cf4c8ee1b1fb81' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3088200' - PS1='# ' - PS2='> ' + INVOCATION_ID=1f6ba9e44cfd4135b26a88e7a9b5790d + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2728569 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sixGBPwc/pbuilderrc_lJO6 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sixGBPwc/b1 --logfile b1/build.log sra-sdk_3.0.9+dfsg-7.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sixGBPwc/pbuilderrc_XE0w --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sixGBPwc/b2 --logfile b2/build.log sra-sdk_3.0.9+dfsg-7.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3088200/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2728569/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -510,7 +542,7 @@ Get: 347 http://deb.debian.org/debian trixie/main amd64 libxml2-dev amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [795 kB] Get: 348 http://deb.debian.org/debian trixie/main amd64 maven-repo-helper all 1.11 [142 kB] Get: 349 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.12.6-1 [1040 B] -Fetched 300 MB in 31s (9596 kB/s) +Fetched 300 MB in 12s (25.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19959 files and directories currently installed.) @@ -1660,8 +1692,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Jan 20 10:22:17 UTC 2026. -Universal Time is now: Tue Jan 20 10:22:17 UTC 2026. +Local time is now: Wed Dec 18 04:08:48 UTC 2024. +Universal Time is now: Wed Dec 18 04:08:48 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... @@ -2153,7 +2185,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sra-sdk_3.0.9+dfsg-7_source.changes +I: user script /srv/workspace/pbuilder/2728569/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2728569/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sra-sdk_3.0.9+dfsg-7_source.changes dpkg-buildpackage: info: source package sra-sdk dpkg-buildpackage: info: source version 3.0.9+dfsg-7 dpkg-buildpackage: info: source distribution unstable @@ -2189,7 +2225,7 @@ make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg' dh_autoreconf_clean -O--buildsystem=cmake jh_clean -O--buildsystem=cmake -Duplicate specification "unlink|u" for option "u" +Duplicate specification "u=s" for option "u" dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake \ @@ -2262,8 +2298,8 @@ RE2_FOUND=FALSE -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C RE2_FOUND=FALSE --- Configuring done (4.7s) --- Generating done (0.6s) +-- Configuring done (8.9s) +-- Generating done (3.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -2278,654 +2314,378 @@ -- Build files have been written to: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg' jh_linkjars -O--buildsystem=cmake -Duplicate specification "unlink|u" for option "u" +Duplicate specification "u=s" for option "u" dh_auto_build -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/sra-sdk-3.0.9+dfsg -B/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f shared/CMakeFiles/tk-version.dir/build.make shared/CMakeFiles/tk-version.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/shared /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/shared /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/shared/CMakeFiles/tk-version.dir/DependInfo.cmake "--color=" make -f ngs/ncbi/ngs/CMakeFiles/ngs.dir/build.make ngs/ncbi/ngs/CMakeFiles/ngs.dir/depend make -f ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/build.make ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/depend -make -f ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build.make ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/depend -make -f ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build.make ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/shared /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/shared /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/shared/CMakeFiles/tk-version.dir/DependInfo.cmake "--color=" -make -f ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build.make ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/depend -make -f ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build.make ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/depend +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs/CMakeFiles/ngs.dir/DependInfo.cmake "--color=" +make -f ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build.make ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs/CMakeFiles/ngs.dir/DependInfo.cmake "--color=" -make -f ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build.make ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/depend +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-py /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/DependInfo.cmake "--color=" -make -f ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build.make ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/depend -make -f ngs/ngs-java/CMakeFiles/ngs-java.dir/build.make ngs/ngs-java/CMakeFiles/ngs-java.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++ /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/DependInfo.cmake "--color=" -make -f ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/DependInfo.cmake "--color=" -make -f libs/kxml/CMakeFiles/kxml.dir/build.make libs/kxml/CMakeFiles/kxml.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/DependInfo.cmake "--color=" -make -f libs/loader/CMakeFiles/loader.dir/build.make libs/loader/CMakeFiles/loader.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/DependInfo.cmake "--color=" -make -f libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build.make libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir/DependInfo.cmake "--color=" -make -f libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/build.make libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/kxml /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/kxml /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/kxml/CMakeFiles/kxml.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/DependInfo.cmake "--color=" -make -f libs/ascp/CMakeFiles/ascp.dir/build.make libs/ascp/CMakeFiles/ascp.dir/depend -make -f libs/diagnose/CMakeFiles/diagnose.dir/build.make libs/diagnose/CMakeFiles/diagnose.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader 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Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/DependInfo.cmake "--color=" -make -f tools/external/vdb-config/tui/CMakeFiles/tui.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ascp /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ascp /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ascp/CMakeFiles/ascp.dir/DependInfo.cmake "--color=" -make -f tools/external/driver-tool/CMakeFiles/sratools.dir/build.make tools/external/driver-tool/CMakeFiles/sratools.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/diagnose /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/diagnose 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tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg 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"--color=" -make -f tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/build.make tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/depend -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/DependInfo.cmake "--color=" -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/DependInfo.cmake "--color=" -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/build.make 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/DependInfo.cmake "--color=" -make -f test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build.make test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f libs/kxml/CMakeFiles/kxml.dir/build.make libs/kxml/CMakeFiles/kxml.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f shared/CMakeFiles/tk-version.dir/build.make shared/CMakeFiles/tk-version.dir/build -make -f ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/build.make ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/build -make -f ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build.make ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build.make ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build -make -f ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build.make ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ncbi/ngs/CMakeFiles/ngs.dir/build.make ngs/ncbi/ngs/CMakeFiles/ngs.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build.make ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build.make ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build.make ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build -make -f ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build.make ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++ /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/DependInfo.cmake "--color=" +make -f ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/build.make ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/build +make -f ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build.make ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-java/CMakeFiles/ngs-java.dir/build.make ngs/ngs-java/CMakeFiles/ngs-java.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/build -make -f libs/loader/CMakeFiles/loader.dir/build.make libs/loader/CMakeFiles/loader.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build.make libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f libs/diagnose/CMakeFiles/diagnose.dir/build.make libs/diagnose/CMakeFiles/diagnose.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java && /usr/bin/javadoc -d /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc -sourcepath "/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java" gov.nih.nlm.ncbi.ngs ngs +make -f ngs/ncbi/ngs/CMakeFiles/ngs.dir/build.make ngs/ncbi/ngs/CMakeFiles/ngs.dir/build +[ 0%] Building C object shared/CMakeFiles/tk-version.dir/toolkit.vers.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/shared && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"shared\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT shared/CMakeFiles/tk-version.dir/toolkit.vers.c.o -MF CMakeFiles/tk-version.dir/toolkit.vers.c.o.d -o CMakeFiles/tk-version.dir/toolkit.vers.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/shared/toolkit.vers.c +make -f ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build.make ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/driver-tool/CMakeFiles/sratools.dir/build.make tools/external/driver-tool/CMakeFiles/sratools.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build.make ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/depend +make -f ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build.make ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/DependInfo.cmake "--color=" +[ 0%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-jni\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o -MF CMakeFiles/ngs-jni.dir/jni_String.c.o.d -o CMakeFiles/ngs-jni.dir/jni_String.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni/jni_String.c +make -f ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build.make ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/depend +[ 0%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-jni\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o -MF CMakeFiles/ngs-jni.dir/jni_Manager.c.o.d -o CMakeFiles/ngs-jni.dir/jni_Manager.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni/jni_Manager.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/DependInfo.cmake "--color=" +make -f ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build.make ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/build.make libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/build -make -f libs/ascp/CMakeFiles/ascp.dir/build.make libs/ascp/CMakeFiles/ascp.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f libs/general-writer/CMakeFiles/general-writer.dir/build.make libs/general-writer/CMakeFiles/general-writer.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/DependInfo.cmake "--color=" +make -f ngs/ngs-java/CMakeFiles/ngs-java.dir/build.make ngs/ngs-java/CMakeFiles/ngs-java.dir/depend +[ 0%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o +[ 0%] Building C object ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o +[ 0%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/ReadCollection.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir/DependInfo.cmake "--color=" +[ 1%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o +[ 1%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o -MF CMakeFiles/ngs.dir/NCBI-NGS.c.o.d -o CMakeFiles/ngs.dir/NCBI-NGS.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NCBI-NGS.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-py\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o -MF CMakeFiles/ngs-py.dir/py_Manager.c.o.d -o CMakeFiles/ngs-py.dir/py_Manager.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py/py_Manager.c +[ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-jni\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -MF CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o.d -o CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni/jni_ErrorMsg.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/ReferenceSequence.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o +make -f ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build.make ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build +[ 1%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o -MF CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o.d -o CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/CSRA1_PileupEvent.c +[ 1%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/ReferenceIterator.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o -MF CMakeFiles/ngs.dir/CSRA1_Pileup.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Pileup.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/CSRA1_Pileup.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/Reference.cpp +[ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/vdb-config/tui/CMakeFiles/tui.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui.dir/build +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -MF CMakeFiles/ngs.dir/CSRA1_Alignment.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/CSRA1_Alignment.c +make -f ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build.make ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/build.make tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/build -make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/build.make tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/build -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/build -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 0%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build.make test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build -[ 0%] Building C object shared/CMakeFiles/tk-version.dir/toolkit.vers.c.o -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o -MF CMakeFiles/ngs.dir/CSRA1_Reference.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Reference.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/CSRA1_Reference.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build.make ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build +[ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -MF CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o.d -o CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/CSRA1_ReferenceWindow.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-jni\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o -MF CMakeFiles/ngs-jni.dir/jni_Manager.c.o.d -o CMakeFiles/ngs-jni.dir/jni_Manager.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni/jni_Manager.c +make -f ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build.make ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-java/CMakeFiles/ngs-java.dir/build.make ngs/ngs-java/CMakeFiles/ngs-java.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 0%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -[ 0%] Building C object ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-jni\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -MF CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o.d -o CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni/jni_ErrorMsg.c -[ 0%] Building C object libs/kxml/CMakeFiles/kxml.dir/xtoc-parsexml.c.o -[ 0%] Building C object libs/kxml/CMakeFiles/kxml.dir/xml.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-py\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o -MF CMakeFiles/ngs-py.dir/py_Manager.c.o.d -o CMakeFiles/ngs-py.dir/py_Manager.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py/py_Manager.c -[ 0%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o -[ 0%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o -[ 0%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/shared && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"shared\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kxml\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/libxml2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xml.c.o -MF CMakeFiles/kxml.dir/xml.c.o.d -o CMakeFiles/kxml.dir/xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/kxml/xml.c -[ 2%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -[ 2%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o -[ 2%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o -[ 2%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-jni\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o -MF CMakeFiles/ngs-jni.dir/jni_String.c.o.d -o CMakeFiles/ngs-jni.dir/jni_String.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni/jni_String.c -[ 3%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o -[ 3%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o +[ 1%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/ReadCollectionItf.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/kxml && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kxml\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/libxml2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xtoc-parsexml.c.o -MF CMakeFiles/kxml.dir/xtoc-parsexml.c.o.d -o CMakeFiles/kxml.dir/xtoc-parsexml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/kxml/xtoc-parsexml.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o -MF CMakeFiles/ngs.dir/NCBI-NGS.c.o.d -o CMakeFiles/ngs.dir/NCBI-NGS.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NCBI-NGS.c -[ 3%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/sratools.cpp.o -cd 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_ReadCollectionItf.cpp +[ 2%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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../ilib/libtk-version.a +[ 2%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/shared && /usr/bin/cmake -P CMakeFiles/tk-version.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o -MF CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o.d -o CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_cpp.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT 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-I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o -MF CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o.d -o CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/test-uuid.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/test-json-parse.cpp -[ 7%] Building CXX object test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/bam-load && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o -MF CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o.d -o CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/CSRA1_PileupEvent.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/loader-file.c.o -MF CMakeFiles/loader.dir/loader-file.c.o.d -o CMakeFiles/loader.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader/loader-file.c -[ 7%] Linking C static library ../../../ilib/libngs-jni.a -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cmake -P CMakeFiles/ngs-jni.dir/cmake_clean_target.cmake -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-jni.dir/link.txt --verbose=1 -[ 7%] Linking C static library ../ilib/libtk-version.a -cd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o -MF CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/CSRA1_ReadCollection.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/DependInfo.cmake "--color=" +/usr/bin/ar qc ../ilib/libtk-version.a "CMakeFiles/tk-version.dir/toolkit.vers.c.o" +/usr/bin/ranlib ../ilib/libtk-version.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 2%] Linking C static library ../../../ilib/libngs-py.a cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cmake -P CMakeFiles/ngs-py.dir/cmake_clean_target.cmake -/usr/bin/ar qc ../../../ilib/libngs-jni.a "CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "CMakeFiles/ngs-jni.dir/jni_String.c.o" "CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/shared && /usr/bin/cmake -E cmake_link_script CMakeFiles/tk-version.dir/link.txt --verbose=1 +[ 2%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o +[ 2%] Linking C static library ../../../ilib/libngs-jni.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cmake -P CMakeFiles/ngs-jni.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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gov.nih.nlm.ncbi.ngs ngs +[ 2%] Built target tk-version +make -f libs/kxml/CMakeFiles/kxml.dir/build.make libs/kxml/CMakeFiles/kxml.dir/depend cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-py.dir/link.txt --verbose=1 -[ 7%] Building C object libs/loader/CMakeFiles/loader.dir/loader-meta.c.o -/usr/bin/ar qc ../ilib/libtk-version.a "CMakeFiles/tk-version.dir/toolkit.vers.c.o" -[ 7%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/eventring.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/eventring.c.o -MF CMakeFiles/tui.dir/eventring.c.o.d -o CMakeFiles/tui.dir/eventring.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/eventring.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/loader-meta.c.o -MF CMakeFiles/loader.dir/loader-meta.c.o.d -o CMakeFiles/loader.dir/loader-meta.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader/loader-meta.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg 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"CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" /usr/bin/ranlib ../../../ilib/libngs-py.a /usr/bin/ranlib ../../../ilib/libngs-jni.a -/usr/bin/ranlib ../ilib/libtk-version.a +[ 2%] Building C object libs/kxml/CMakeFiles/kxml.dir/xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/kxml && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kxml\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/libxml2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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'/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f libs/loader/CMakeFiles/loader.dir/build.make libs/loader/CMakeFiles/loader.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 7%] Built target ngs-py -[ 7%] Built target ngs-jni -[ 7%] Built target tk-version -[ 7%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/file_dlg.c.o -[ 7%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -[ 7%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o -[ 7%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o +make -f libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build.make libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build +[ 3%] Building C object libs/loader/CMakeFiles/loader.dir/progressbar.c.o +cd 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o -MF CMakeFiles/ngs.dir/SRA_Statistics.c.o.d -o CMakeFiles/ngs.dir/SRA_Statistics.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/SRA_Statistics.c +[ 4%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/PileupIterator.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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-D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o -MF CMakeFiles/sratools.dir/config.cpp.o.d -o CMakeFiles/sratools.dir/config.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/config.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/Pileup.cpp -[ 7%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o -[ 7%] Building C object libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o -[ 7%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o +[ 4%] Building C object libs/loader/CMakeFiles/loader.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/loader-file.c.o -MF CMakeFiles/loader.dir/loader-file.c.o.d -o CMakeFiles/loader.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader/loader-file.c +[ 4%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function 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-I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -MF CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/SRA_DB_ReadCollection.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/Pileup.cpp +[ 4%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o -MF CMakeFiles/ngs.dir/SRA_Read.c.o.d -o CMakeFiles/ngs.dir/SRA_Read.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/SRA_Read.c +[ 4%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -MF CMakeFiles/ngs.dir/SRA_ReadGroup.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/SRA_ReadGroup.c +[ 4%] Building C object libs/loader/CMakeFiles/loader.dir/loader-meta.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/loader-meta.c.o -MF CMakeFiles/loader.dir/loader-meta.c.o.d -o CMakeFiles/loader.dir/loader-meta.c.o -c 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CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/PileupEventIterator.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ascp -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -Wno-unused-result -MD -MT libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o -MF CMakeFiles/ascp.dir/unix/connect.c.o.d -o CMakeFiles/ascp.dir/unix/connect.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ascp/unix/connect.c -[ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o -MF CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/AlignmentItf.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o -MF CMakeFiles/ngs.dir/CSRA1_Pileup.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Pileup.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/CSRA1_Pileup.c -[ 7%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/PileupEventItf.cpp -[ 7%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/ReadGroupItf.cpp -[ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -MF CMakeFiles/ngs.dir/CSRA1_Alignment.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/CSRA1_Alignment.c -[ 7%] Building CXX object tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/input.cpp.o -[ 7%] Building C object libs/loader/CMakeFiles/loader.dir/queue-file.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/input.cpp.o -MF CMakeFiles/qa-stats.dir/input.cpp.o.d -o CMakeFiles/qa-stats.dir/input.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/qa-stats/input.cpp -[ 7%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o -[ 7%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/queue-file.c.o -MF CMakeFiles/loader.dir/queue-file.c.o.d -o CMakeFiles/loader.dir/queue-file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader/queue-file.c +[ 4%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceIteratorItf.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/ReferenceItf.cpp -[ 7%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o -MF CMakeFiles/tui.dir/line_policy.c.o.d -o CMakeFiles/tui.dir/line_policy.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/line_policy.c -In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/sratools.hpp:31, - from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/sratools.cpp:59: -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ^ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -[ 7%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -MF CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o.d -o CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/FragmentBlobIterator.cpp -In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.cpp:36, - from /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/test-accession.cpp:39: -/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ^ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -[ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -MF CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o.d -o CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/CSRA1_ReferenceWindow.c -[ 7%] Linking CXX executable ../../../test-bin/Test_BamLoader_platform -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/bam-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_BamLoader_platform.dir/link.txt --verbose=1 -[ 7%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_AlignmentIteratorItf.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o" -o ../../../test-bin/Test_BamLoader_platform -[ 7%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o -[ 7%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/command-line.cpp.o -cd 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/ReadItf.cpp +[ 5%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/ReferenceItf.cpp +[ 5%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xtoc-parsexml.c.o -MF CMakeFiles/kxml.dir/xtoc-parsexml.c.o.d -o CMakeFiles/kxml.dir/xtoc-parsexml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/kxml/xtoc-parsexml.c +[ 5%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_FragmentIteratorItf.cpp +[ 5%] Building C object libs/loader/CMakeFiles/loader.dir/queue-file.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/queue-file.c.o -MF CMakeFiles/loader.dir/queue-file.c.o.d -o CMakeFiles/loader.dir/queue-file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader/queue-file.c +[ 5%] Building C object libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o -MF CMakeFiles/loader.dir/alignment-writer.c.o.d -o CMakeFiles/loader.dir/alignment-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader/alignment-writer.c +[ 5%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -MF CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/SRA_ReadGroupInfo.c +[ 5%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o 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-D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_PackageItf.cpp +[ 5%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/SRA_ReferenceSequence.c +[ 5%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/PileupEventItf.cpp +[ 5%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o -MF CMakeFiles/ngs.dir/NGS_Statistics.c.o.d -o CMakeFiles/ngs.dir/NGS_Statistics.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Statistics.c +[ 5%] Building C object libs/loader/CMakeFiles/loader.dir/common-reader.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/common-reader.c.o -MF CMakeFiles/loader.dir/common-reader.c.o.d -o CMakeFiles/loader.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader/common-reader.c +[ 6%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -MF CMakeFiles/ngs.dir/NGS_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_ReadCollection.c +[ 6%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/AlignmentIterator.cpp +[ 6%] Building C object libs/kxml/CMakeFiles/kxml.dir/xtoc.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/kxml && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kxml\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/libxml2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xtoc.c.o -MF CMakeFiles/kxml.dir/xtoc.c.o.d -o CMakeFiles/kxml.dir/xtoc.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/kxml/xtoc.c Loading source files for package gov.nih.nlm.ncbi.ngs... Loading source files for package ngs... -[ 7%] Building C object libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/vdb-sqlite && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb-sqlite\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -MF CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o.d -o CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3vdb.c -[ 7%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o -MF CMakeFiles/tui.dir/screen.c.o.d -o CMakeFiles/tui.dir/screen.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/screen.c -[ 8%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o -MF CMakeFiles/sratools.dir/run-source.cpp.o.d -o CMakeFiles/sratools.dir/run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/run-source.cpp -[ 9%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-reader.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-reader.c.o -MF CMakeFiles/fastqloader.dir/common-reader.c.o.d -o CMakeFiles/fastqloader.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/common-reader.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/build.make libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/DependInfo.cmake "--color=" -[ 9%] Built target Test_BamLoader_platform -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/build.make libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/build +[ 6%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/Alignment.cpp +[ 7%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/ReadGroupIterator.cpp +[ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -MF CMakeFiles/ngs.dir/NGS_PileupEvent.c.o.d -o CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_PileupEvent.c +[ 7%] Building C object libs/loader/CMakeFiles/loader.dir/common-writer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/common-writer.c.o -MF CMakeFiles/loader.dir/common-writer.c.o.d -o CMakeFiles/loader.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader/common-writer.c +[ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o -MF CMakeFiles/ngs.dir/NGS_Pileup.c.o.d -o CMakeFiles/ngs.dir/NGS_Pileup.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Pileup.c +[ 7%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/ReferenceItf.cpp +[ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -MF CMakeFiles/ngs.dir/NGS_ReadGroup.c.o.d -o CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_ReadGroup.c +[ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o -MF CMakeFiles/ngs.dir/NGS_Alignment.c.o.d -o CMakeFiles/ngs.dir/NGS_Alignment.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Alignment.c +[ 7%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceItf.cpp +[ 7%] Building C object libs/loader/CMakeFiles/loader.dir/mmarray.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/mmarray.c.o -MF CMakeFiles/loader.dir/mmarray.c.o.d -o CMakeFiles/loader.dir/mmarray.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader/mmarray.c +[ 7%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_PileupEventItf.cpp +Constructing Javadoc information... +[ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o -MF CMakeFiles/ngs.dir/NGS_Reference.c.o.d -o CMakeFiles/ngs.dir/NGS_Reference.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Reference.c +[ 7%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_ReferenceSequence.c +[ 7%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o +[ 7%] Building C object libs/loader/CMakeFiles/loader.dir/reference-writer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/reference-writer.c.o -MF CMakeFiles/loader.dir/reference-writer.c.o.d -o CMakeFiles/loader.dir/reference-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader/reference-writer.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/ReferenceSequenceItf.cpp +[ 8%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_PileupEventIteratorItf.cpp +[ 8%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o -MF CMakeFiles/ngs.dir/NGS_Read.c.o.d -o CMakeFiles/ngs.dir/NGS_Read.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Read.c +[ 8%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/ReadGroup.cpp +[ 8%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/ReadIterator.cpp +[ 8%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o -MF CMakeFiles/ngs.dir/NGS_Fragment.c.o.d -o CMakeFiles/ngs.dir/NGS_Fragment.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Fragment.c +[ 8%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Read.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Read.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/Read.cpp +[ 9%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o -MF CMakeFiles/ngs.dir/NGS_Cursor.c.o.d -o CMakeFiles/ngs.dir/NGS_Cursor.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Cursor.c +[ 9%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/AlignmentItf.cpp +[ 9%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o -MF CMakeFiles/ngs.dir/NGS_Refcount.c.o.d -o CMakeFiles/ngs.dir/NGS_Refcount.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Refcount.c [ 9%] Linking C static library ../../ilib/libkxml.a cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/kxml && /usr/bin/cmake -P CMakeFiles/kxml.dir/cmake_clean_target.cmake -[ 9%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_FragmentItf.cpp -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 9%] Building CXX object libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o -MF CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o.d -o CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_makedb.cpp +[ 9%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_PileupItf.cpp cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/kxml && /usr/bin/cmake -E cmake_link_script CMakeFiles/kxml.dir/link.txt --verbose=1 +[ 9%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/ReadGroupItf.cpp +[ 9%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceSequenceItf.cpp +[ 9%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/FragmentIterator.cpp /usr/bin/ar qc ../../ilib/libkxml.a CMakeFiles/kxml.dir/xml.c.o "CMakeFiles/kxml.dir/xtoc-parsexml.c.o" CMakeFiles/kxml.dir/xtoc.c.o -[ 9%] Building C object libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o -MF CMakeFiles/loader.dir/alignment-writer.c.o.d -o CMakeFiles/loader.dir/alignment-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader/alignment-writer.c -[ 10%] Building C object libs/ascp/CMakeFiles/ascp.dir/linux/ascp-path.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ascp -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/ascp/CMakeFiles/ascp.dir/linux/ascp-path.c.o -MF CMakeFiles/ascp.dir/linux/ascp-path.c.o.d -o CMakeFiles/ascp.dir/linux/ascp-path.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ascp/linux/ascp-path.c -[ 10%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o -[ 10%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o -MF CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/CSRA1_ReadCollection.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o -MF CMakeFiles/ngs.dir/CSRA1_Reference.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Reference.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/CSRA1_Reference.c -[ 10%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o -MF CMakeFiles/ngs.dir/CSRA1_Read.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Read.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/CSRA1_Read.c -[ 10%] Linking CXX static library ../../../../ilib/libtui_cpp.a -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -P CMakeFiles/tui_cpp.dir/cmake_clean_target.cmake +[ 9%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o -MF CMakeFiles/ngs.dir/NGS_String.c.o.d -o CMakeFiles/ngs.dir/NGS_String.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_String.c /usr/bin/ranlib ../../ilib/libkxml.a -Constructing Javadoc information... -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -E cmake_link_script CMakeFiles/tui_cpp.dir/link.txt --verbose=1 -[ 10%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_FragmentIteratorItf.cpp -/usr/bin/ar qc ../../../../ilib/libtui_cpp.a CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o -[ 10%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_PackageItf.cpp -[ 10%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/PileupEvent.cpp -[ 10%] Linking CXX executable ../../../test-bin/Test_Drivertool_BuildVersion -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_BuildVersion.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o" -o ../../../test-bin/Test_Drivertool_BuildVersion -/usr/bin/ranlib ../../../../ilib/libtui_cpp.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 10%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -[ 10%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/ReferenceSequenceItf.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceItf.cpp -[ 10%] Built target kxml -[ 10%] Linking C static library ../../ilib/libascp.a -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cmake -P CMakeFiles/ascp.dir/cmake_clean_target.cmake -[ 10%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -MF CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o.d -o CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/FragmentBlob.cpp -[ 10%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o -MF CMakeFiles/sratools.dir/proc.cpp.o.d -o CMakeFiles/sratools.dir/proc.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/proc.cpp -[ 11%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/EBI_ReferenceSequence.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ascp.dir/link.txt --verbose=1 -[ 11%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o -MF CMakeFiles/tui.dir/string_cache.c.o.d -o CMakeFiles/tui.dir/string_cache.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/string_cache.c -[ 11%] Building C object libs/loader/CMakeFiles/loader.dir/common-reader.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/common-reader.c.o -MF CMakeFiles/loader.dir/common-reader.c.o.d -o CMakeFiles/loader.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader/common-reader.c -[ 11%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/fastq-reader.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/fastq-reader.c.o -MF CMakeFiles/fastqloader.dir/fastq-reader.c.o.d -o CMakeFiles/fastqloader.dir/fastq-reader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/fastq-reader.c -/usr/bin/ar qc ../../ilib/libascp.a CMakeFiles/ascp.dir/ascp.c.o CMakeFiles/ascp.dir/unix/connect.c.o "CMakeFiles/ascp.dir/linux/ascp-path.c.o" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 11%] Built target Test_Drivertool_BuildVersion -/usr/bin/ranlib ../../ilib/libascp.a +[ 9%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o -MF CMakeFiles/ngs.dir/NGS_Id.c.o.d -o CMakeFiles/ngs.dir/NGS_Id.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Id.c +ngs/itf/Refcount.java:57: warning: [removal] finalize() in Object has been deprecated and marked for removal + protected void finalize () + ^ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 11%] Building C object libs/loader/CMakeFiles/loader.dir/common-writer.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/common-writer.c.o -MF CMakeFiles/loader.dir/common-writer.c.o.d -o CMakeFiles/loader.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader/common-writer.c -[ 11%] Built target tui_cpp -[ 11%] Building C object libs/loader/CMakeFiles/loader.dir/mmarray.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/mmarray.c.o -MF CMakeFiles/loader.dir/mmarray.c.o.d -o CMakeFiles/loader.dir/mmarray.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader/mmarray.c -[ 11%] Building C object libs/loader/CMakeFiles/loader.dir/reference-writer.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/reference-writer.c.o -MF CMakeFiles/loader.dir/reference-writer.c.o.d -o CMakeFiles/loader.dir/reference-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader/reference-writer.c -[ 12%] Building C object libs/loader/CMakeFiles/loader.dir/sequence-writer.c.o +[ 10%] Building C object libs/loader/CMakeFiles/loader.dir/sequence-writer.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/sequence-writer.c.o -MF CMakeFiles/loader.dir/sequence-writer.c.o.d -o CMakeFiles/loader.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/loader/sequence-writer.c -[ 12%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/AlignmentItf.cpp +make -f libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/build.make libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/depend +[ 10%] Built target kxml +make -f libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/build.make libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/DependInfo.cmake "--color=" +[ 10%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o -MF CMakeFiles/ngs.dir/NGS_ErrBlock.c.o.d -o CMakeFiles/ngs.dir/NGS_ErrBlock.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_ErrBlock.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 12%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/AlignmentIterator.cpp -[ 12%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/Alignment.cpp -[ 12%] Built target ascp -[ 13%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/VdbReference.cpp -[ 13%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceSequenceItf.cpp -[ 13%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o -MF CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o.d -o CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/zz_fastq-grammar.c -[ 13%] Building C object libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/diagnose && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/diagnose -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o -MF CMakeFiles/diagnose.dir/endpoint.c.o.d -o CMakeFiles/diagnose.dir/endpoint.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/diagnose/endpoint.c -[ 14%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -[ 14%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/ReadGroupIterator.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o -MF CMakeFiles/tui.dir/tui.c.o.d -o CMakeFiles/tui.dir/tui.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui.c -[ 14%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/ReadGroupItf.cpp -[ 14%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -MF CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/FragmentItf.cpp -In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/sratools.hpp:31, - from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/run-source.hpp:39, - from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/run-source.cpp:51: -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ^ -[ 14%] Linking CXX executable ../../../test-bin/Test_Drivertool_Accession -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_Accession.dir/link.txt --verbose=1 -[ 14%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -[ 15%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/FragmentItf.cpp -[ 15%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/ReadItf.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o" -o ../../../test-bin/Test_Drivertool_Accession -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/StatisticsItf.cpp -[ 15%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o -MF CMakeFiles/ngs.dir/SRA_Statistics.c.o.d -o CMakeFiles/ngs.dir/SRA_Statistics.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/SRA_Statistics.c -[ 15%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -MF CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/SRA_DB_ReadCollection.c -[ 15%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o -MF CMakeFiles/ngs.dir/SRA_Read.c.o.d -o CMakeFiles/ngs.dir/SRA_Read.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/SRA_Read.c -[ 15%] Linking CXX executable ../../../test-bin/Test_Drivertool_UUID -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_UUID.dir/link.txt --verbose=1 +make -f libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/build.make libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build.make tools/external/sra-dump/CMakeFiles/fastq-dump.dir/depend -[ 15%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_PileupEventItf.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o" -o ../../../test-bin/Test_Drivertool_UUID make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump/CMakeFiles/fastq-dump.dir/DependInfo.cmake "--color=" -[ 15%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o -MF CMakeFiles/tui.dir/tui_dlg.c.o.d -o CMakeFiles/tui.dir/tui_dlg.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_dlg.c -[ 15%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -MF CMakeFiles/ngs.dir/SRA_ReadGroup.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/SRA_ReadGroup.c -[ 15%] Built target Test_Drivertool_Accession -[ 15%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_PileupIteratorItf.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build.make tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build -[ 15%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o +make -f libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/build.make libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/build +[ 10%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_PileupItf.cpp -[ 15%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/factory.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/factory.c.o -MF CMakeFiles/fastq-dump.dir/factory.c.o.d -o CMakeFiles/fastq-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/factory.c -[ 15%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_PileupEventIteratorItf.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 15%] Built target Test_Drivertool_UUID -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/proc.cpp: In function 'void printEnvironment(bool)': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/proc.cpp:67:93: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 67 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) - | ^ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/proc.cpp:67:35: note: the temporary was destroyed at the end of the full expression 'make_sequence(constants::env_var::names(), ((size_t)constants::env_var::END_ENUM))' - 67 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/proc.cpp: In function 'void testing_5()': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/proc.cpp:91:93: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 91 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) { - | ^ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/proc.cpp:91:35: note: the temporary was destroyed at the end of the full expression 'make_sequence(constants::env_var::names(), ((size_t)constants::env_var::END_ENUM))' - 91 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 15%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_PileupEventItf.cpp -[ 15%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o -[ 15%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o -MF CMakeFiles/fastq-dump.dir/fasta_dump.c.o.d -o CMakeFiles/fastq-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/fasta_dump.c -[ 15%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/id2name.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-misleading-indentation -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -MF CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o.d -o CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/zz_fastq-lex.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/id2name.c.o -MF CMakeFiles/fastqloader.dir/id2name.c.o.d -o CMakeFiles/fastqloader.dir/id2name.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/id2name.c -[ 15%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o -[ 16%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o -MF CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/StatisticsItf.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PackageItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/PackageItf.cpp -[ 16%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o -MF CMakeFiles/fastq-dump.dir/core.c.o.d -o CMakeFiles/fastq-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c -[ 16%] Building C object libs/general-writer/CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/general-writer/CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o -MF CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o.d -o CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/general-writer/utf8-like-int-codec.c -[ 16%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fastq.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fastq.c.o -MF CMakeFiles/fastq-dump.dir/fastq.c.o.d -o CMakeFiles/fastq-dump.dir/fastq.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/fastq.c -[ 16%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o -MF CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o.d -o CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/ReferenceBlob.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o -MF CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o.d -o CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_FragmentBlob.c +[ 10%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o +[ 10%] Building CXX object libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/VdbReadCollection.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o -MF CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o.d -o CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_makedb.cpp +[ 10%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o +[ 10%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_PileupIteratorItf.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o -MF CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o.d -o CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_FragmentBlobIterator.c +[ 10%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_ReferenceBlob.c +[ 10%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PileupItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/PileupItf.cpp +[ 10%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/Fragment.cpp +[ 10%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_ReferenceBlobIterator.c Creating destination directory: "/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/" -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c: In function 'KMain': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 1011 | ReportBuildDate ( __DATE__ ); - | ^~~~~~~~ -[ 16%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o -MF CMakeFiles/sratools.dir/uuid.cpp.o.d -o CMakeFiles/sratools.dir/uuid.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/uuid.cpp +[ 10%] Building C object libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/vdb-sqlite && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb-sqlite\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -MF CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o.d -o CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3vdb.c +[ 11%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o -MF CMakeFiles/ngs.dir/VByteBlob.c.o.d -o CMakeFiles/ngs.dir/VByteBlob.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/VByteBlob.c +[ 11%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_PileupIteratorItf.cpp Building index for all the packages and classes... -[ 16%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg_helper.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg_helper.c.o -MF CMakeFiles/tui.dir/tui_dlg_helper.c.o.d -o CMakeFiles/tui.dir/tui_dlg_helper.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_dlg_helper.c -[ 16%] Building CXX object tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/output.cpp.o +[ 11%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/Statistics.cpp Standard Doclet version 21.0.5+11-Debian-1 Building tree for all the packages and classes... -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/output.cpp.o -MF CMakeFiles/qa-stats.dir/output.cpp.o.d -o CMakeFiles/qa-stats.dir/output.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/qa-stats/output.cpp -[ 17%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX 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17%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o -MF CMakeFiles/sratools.dir/accession.cpp.o.d -o CMakeFiles/sratools.dir/accession.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.cpp -[ 17%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o -MF CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o.d -o CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/ReferenceBlobIterator.cpp -[ 17%] Linking CXX executable ../../../../../test-bin/idx-text-checklookup -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/idx-text-checklookup.dir/link.txt --verbose=1 -[ 17%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/service.cpp.o -[ 17%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb 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-D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/ReadGroup.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -MF CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/SRA_ReadGroupInfo.c -[ 17%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -/usr/bin/c++ -Wall -g -O2 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/StringItf.cpp -[ 17%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/Refcount.cpp -[ 17%] Linking C static library ../../ilib/libdiagnose.a -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/diagnose && /usr/bin/cmake -P CMakeFiles/diagnose.dir/cmake_clean_target.cmake -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/diagnose && /usr/bin/cmake -E cmake_link_script CMakeFiles/diagnose.dir/link.txt --verbose=1 -ngs/itf/Refcount.java:57: warning: [removal] finalize() in Object has been deprecated and marked for removal - protected void finalize () - ^ -/usr/bin/ar qc ../../ilib/libdiagnose.a CMakeFiles/diagnose.dir/diagnose.c.o CMakeFiles/diagnose.dir/endpoint.c.o -Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Alignment.html... -[ 17%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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-D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/ErrBlock.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE 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CMakeFiles/general-writer.dir/cmake_clean_target.cmake -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o" -o ../../../test-bin/ngs-makedb -Wl,-Bstatic -lktst -lkapp -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -/usr/bin/ranlib ../../ilib/libdiagnose.a -[ 18%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Read.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Read.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/Read.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/cmake -E cmake_link_script CMakeFiles/general-writer.dir/link.txt --verbose=1 -[ 18%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/FragmentIterator.cpp -[ 18%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/Fragment.cpp -/usr/bin/ar qc ../../ilib/libgeneral-writer.a "CMakeFiles/general-writer.dir/general-writer.cpp.o" "CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o" -[ 18%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o -[ 18%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o +[ 11%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_PileupItf.cpp +[ 11%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_ReadCollectionItf.cpp +[ 12%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/ReadItf.cpp +[ 12%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/StringRef.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/c++/Statistics.cpp -[ 18%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_AlignmentIteratorItf.cpp +[ 12%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_PileupEventIteratorItf.cpp +Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Alignment.html... +[ 12%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o +[ 12%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_ReadGroupItf.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_PileupEventItf.cpp +[ 12%] Linking C static library ../../../ilib/libngs.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cmake -P CMakeFiles/ngs.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../ilib/libngs.a "CMakeFiles/ngs.dir/NCBI-NGS.c.o" CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o CMakeFiles/ngs.dir/CSRA1_Pileup.c.o CMakeFiles/ngs.dir/CSRA1_Alignment.c.o CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o CMakeFiles/ngs.dir/CSRA1_Reference.c.o CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o CMakeFiles/ngs.dir/CSRA1_Read.c.o CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o CMakeFiles/ngs.dir/SRA_Statistics.c.o CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o CMakeFiles/ngs.dir/SRA_Read.c.o CMakeFiles/ngs.dir/SRA_ReadGroup.c.o CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o CMakeFiles/ngs.dir/SRA_ReadCollection.c.o CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o CMakeFiles/ngs.dir/NGS_Statistics.c.o CMakeFiles/ngs.dir/NGS_ReadCollection.c.o CMakeFiles/ngs.dir/NGS_PileupEvent.c.o CMakeFiles/ngs.dir/NGS_Pileup.c.o CMakeFiles/ngs.dir/NGS_ReadGroup.c.o CMakeFiles/ngs.dir/NGS_Alignment.c.o CMakeFiles/ngs.dir/NGS_Reference.c.o CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o CMakeFiles/ngs.dir/NGS_Read.c.o CMakeFiles/ngs.dir/NGS_Fragment.c.o CMakeFiles/ngs.dir/NGS_Cursor.c.o CMakeFiles/ngs.dir/NGS_Refcount.c.o CMakeFiles/ngs.dir/NGS_String.c.o CMakeFiles/ngs.dir/NGS_Id.c.o CMakeFiles/ngs.dir/NGS_ErrBlock.c.o CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o CMakeFiles/ngs.dir/VByteBlob.c.o +[ 12%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/FragmentItf.cpp +[ 12%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/PileupEventItf.cpp /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/Alignment.java:140: warning: no comment static int all = primaryAlignment | secondaryAlignment; ^ -[ 18%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o -MF CMakeFiles/sratools.dir/json-parse.cpp.o.d -o CMakeFiles/sratools.dir/json-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/json-parse.cpp /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/Alignment.java:176: warning: no comment static int clipLeft = 0; ^ @@ -2936,6 +2696,7 @@ static int maxMapQuality = 8; // pass alignments with mappingQuality <= param ^ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/Alignment.java:131: warning: no comment +/usr/bin/ranlib ../../../ilib/libngs.a static int minMapQuality = 4; // pass alignments with mappingQuality >= param ^ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/Alignment.java:133: warning: no comment @@ -2956,155 +2717,62 @@ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/Alignment.java:134: warning: no comment static int startWithinSlice = 32; // change slice intersection criteria so that start pos is within slice ^ -[ 18%] Built target idx-text-checklookup -/usr/bin/ranlib ../../ilib/libgeneral-writer.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 18%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/VdbAlignment.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 18%] Built target diagnose -[ 18%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -[ 18%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o -[ 18%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -MF CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o.d -o CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/NGS-VDB.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o -MF CMakeFiles/ngs-disp.dir/StringItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/StringItf.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o -MF CMakeFiles/sratools.dir/SDL-response.cpp.o.d -o CMakeFiles/sratools.dir/SDL-response.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/SDL-response.cpp -[ 18%] Built target general-writer -make -f tools/external/sra-dump/CMakeFiles/sff-dump.dir/build.make tools/external/sra-dump/CMakeFiles/sff-dump.dir/depend -[ 18%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/SRA_ReferenceSequence.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump/CMakeFiles/sff-dump.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-dump/CMakeFiles/sff-dump.dir/build.make tools/external/sra-dump/CMakeFiles/sff-dump.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 18%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o -MF CMakeFiles/sff-dump.dir/factory.c.o.d -o CMakeFiles/sff-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/factory.c -[ 18%] Built target ngs-makedb -[ 18%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o -MF CMakeFiles/ngs.dir/NGS_Statistics.c.o.d -o CMakeFiles/ngs.dir/NGS_Statistics.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Statistics.c -[ 18%] Linking CXX executable ../../../test-bin/Test_Drivertool_CommandLine -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_CommandLine.dir/link.txt --verbose=1 -[ 18%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_PileupItf.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o" -o ../../../test-bin/Test_Drivertool_CommandLine -[ 19%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_menu.c.o -[ 20%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_menu.c.o -MF CMakeFiles/tui.dir/tui_menu.c.o.d -o CMakeFiles/tui.dir/tui_menu.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_menu.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -MF CMakeFiles/ngs.dir/NGS_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_ReadCollection.c -[ 20%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_palette.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_palette.c.o -MF CMakeFiles/tui.dir/tui_palette.c.o.d -o CMakeFiles/tui.dir/tui_palette.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_palette.c -[ 20%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_std_dlg.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_std_dlg.c.o -MF CMakeFiles/tui.dir/tui_std_dlg.c.o.d -o CMakeFiles/tui.dir/tui_std_dlg.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_std_dlg.c -[ 20%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o -MF CMakeFiles/sratools.dir/tool-args.cpp.o.d -o CMakeFiles/sratools.dir/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/tool-args.cpp -[ 20%] Linking CXX static library ../../../ilib/libngs-adapt-c++.a -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/cmake -P CMakeFiles/ngs-adapt-c++.dir/cmake_clean_target.cmake -[ 20%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget.c.o -MF CMakeFiles/tui.dir/tui_widget.c.o.d -o CMakeFiles/tui.dir/tui_widget.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 20%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_PileupIteratorItf.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-adapt-c++.dir/link.txt --verbose=1 -[ 20%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_ReadCollectionItf.cpp -/usr/bin/ar qc ../../../ilib/libngs-adapt-c++.a "CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o" -[ 20%] Built target Test_Drivertool_CommandLine -make -f tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build.make tools/external/sra-dump/CMakeFiles/illumina-dump.dir/depend -[ 20%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o +[ 12%] Built target ngs +make -f libs/ascp/CMakeFiles/ascp.dir/build.make libs/ascp/CMakeFiles/ascp.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump/CMakeFiles/illumina-dump.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_ReadGroupItf.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ascp /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ascp /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ascp/CMakeFiles/ascp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build.make tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build +make -f libs/ascp/CMakeFiles/ascp.dir/build.make libs/ascp/CMakeFiles/ascp.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 20%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_button.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_button.c.o -MF CMakeFiles/tui.dir/tui_widget_button.c.o.d -o CMakeFiles/tui.dir/tui_widget_button.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_button.c -[ 20%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o +[ 12%] Building C object libs/ascp/CMakeFiles/ascp.dir/ascp.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ascp -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/ascp/CMakeFiles/ascp.dir/ascp.c.o -MF CMakeFiles/ascp.dir/ascp.c.o.d -o CMakeFiles/ascp.dir/ascp.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ascp/ascp.c +[ 12%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_ReadGroupIteratorItf.cpp -[ 20%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o +[ 12%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_AlignmentIteratorItf.cpp +[ 12%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -MF CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o.d -o CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/FragmentBlobIterator.cpp +[ 12%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/StatisticsItf.cpp +[ 12%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/StringItf.cpp +make -f libs/diagnose/CMakeFiles/diagnose.dir/build.make libs/diagnose/CMakeFiles/diagnose.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/diagnose /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/diagnose /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/diagnose/CMakeFiles/diagnose.dir/DependInfo.cmake "--color=" Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/AlignmentIterator.html... -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -MF CMakeFiles/ngs.dir/NGS_PileupEvent.c.o.d -o CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_PileupEvent.c -[ 20%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/factory.c.o -[ 20%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/factory.c.o -MF CMakeFiles/illumina-dump.dir/factory.c.o.d -o CMakeFiles/illumina-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/factory.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_ReadGroupIteratorItf.cpp -[ 21%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_AlignmentItf.cpp -[ 21%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o -MF CMakeFiles/sratools.dir/build-version.cpp.o.d -o CMakeFiles/sratools.dir/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/build-version.cpp -make -f tools/external/sra-dump/CMakeFiles/abi-dump.dir/build.make tools/external/sra-dump/CMakeFiles/abi-dump.dir/depend -In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.cpp:36: -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ^ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f libs/diagnose/CMakeFiles/diagnose.dir/build.make libs/diagnose/CMakeFiles/diagnose.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump 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-Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/diagnose/CMakeFiles/diagnose.dir/diagnose.c.o -MF CMakeFiles/diagnose.dir/diagnose.c.o.d -o CMakeFiles/diagnose.dir/diagnose.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/diagnose/diagnose.c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/ErrorMsg.java:38: warning: no main description * @return What went wrong ^ -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-dump/CMakeFiles/abi-dump.dir/build.make tools/external/sra-dump/CMakeFiles/abi-dump.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/build.make tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/loader.dir/link.txt --verbose=1 /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/ErrorMsg.java:49: warning: no comment public ErrorMsg () ^ -[ 21%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/ErrorMsg.java:58: warning: no comment public ErrorMsg ( ErrorMsg obj ) ^ -[ 21%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/factory.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 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-I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/dyn_string.c.o -MF CMakeFiles/sra-pileup.dir/dyn_string.c.o.d -o CMakeFiles/sra-pileup.dir/dyn_string.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/dyn_string.c +[ 12%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/Refcount.cpp Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Fragment.html... -make -f tools/external/sra-pileup/CMakeFiles/sam-dump.dir/build.make tools/external/sra-pileup/CMakeFiles/sam-dump.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup/CMakeFiles/sam-dump.dir/DependInfo.cmake "--color=" -[ 22%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o -[ 22%] Linking C static library 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastqloader.dir/link.txt --verbose=1 -[ 22%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/inputfiles.c.o -[ 22%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/fasta_dump.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/inputfiles.c.o -MF CMakeFiles/sam-dump.dir/inputfiles.c.o.d -o CMakeFiles/sam-dump.dir/inputfiles.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/inputfiles.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-bind-c++.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../ilib/libfastqloader.a "CMakeFiles/fastqloader.dir/spot-assembler.c.o" "CMakeFiles/fastqloader.dir/common-writer.c.o" "CMakeFiles/fastqloader.dir/sequence-writer.c.o" "CMakeFiles/fastqloader.dir/common-reader.c.o" "CMakeFiles/fastqloader.dir/fastq-reader.c.o" "CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o" "CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o" CMakeFiles/fastqloader.dir/id2name.c.o -/usr/bin/ar qc ../../../../ilib/libngs-bind-c++.a "CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" -[ 22%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o -MF CMakeFiles/ngs-disp.dir/Refcount.cpp.o.d -o CMakeFiles/ngs-disp.dir/Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/Refcount.cpp -[ 22%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o +[ 12%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_ReadItf.cpp +[ 13%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-bind-c++.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_AlignmentItf.cpp Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/FragmentIterator.html... +[ 13%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_ReadGroupIteratorItf.cpp +/usr/bin/ar qc ../../../../ilib/libngs-bind-c++.a "CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/LibDependencies.html... /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java:29: warning: no comment public class LibDependencies { @@ -3119,77 +2787,53 @@ public class LibDependencies { ^ Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/NGS.html... +/usr/bin/ranlib ../../../../ilib/libngs-bind-c++.a /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/NGS.java:40: warning: no comment public class NGS ^ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/NGS.java:40: warning: use of default constructor, which does not provide a comment public class NGS ^ -/usr/bin/ranlib ../../../../ilib/libngs-bind-c++.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/NGS.java:133: warning: no comment public static void main(String[] args) { ^ -make -f tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/build.make tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/DependInfo.cmake "--color=" -[ 22%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o -MF CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o.d -o CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/cmdline_cmn.c -make -f tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/build.make tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/build.make tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 22%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o -MF CMakeFiles/ngs-disp.dir/VTable.cpp.o.d -o CMakeFiles/ngs-disp.dir/VTable.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/VTable.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/build.make tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Package.html... -[ 22%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/helper.c.o /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/Package.java:37: warning: no main description * @return package version as a 1..3 part string ^ -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/helper.c.o -MF CMakeFiles/fasterq-dump.dir/helper.c.o.d -o CMakeFiles/fasterq-dump.dir/helper.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/helper.c -[ 22%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o +[ 13%] Built target ngs-bind-c++ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/Package.java:33: warning: use of default constructor, which does not provide a comment public class Package ^ -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-context.c -[ 22%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -MF CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o.d -o CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/ErrBlock.cpp +make -f libs/general-writer/CMakeFiles/general-writer.dir/build.make libs/general-writer/CMakeFiles/general-writer.dir/depend +[ 13%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o -MF CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/AlignmentItf.cpp +make -f tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/general-writer /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer/CMakeFiles/general-writer.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/DependInfo.cmake "--color=" Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Pileup.html... -[ 22%] Linking CXX static library ../../ilib/libngs-vdb.a -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/cmake -P CMakeFiles/ngs-vdb.dir/cmake_clean_target.cmake -[ 22%] Built target ngs-adapt-c++ -/usr/bin/ranlib ../../../ilib/libfastqloader.a -/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/Pileup.java:58: warning: no main description - * @return base at current Reference position - ^ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-vdb.dir/link.txt --verbose=1 -make -f tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build.make tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/depend -make -f tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build.make tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/depend +make -f libs/general-writer/CMakeFiles/general-writer.dir/build.make libs/general-writer/CMakeFiles/general-writer.dir/build +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/DependInfo.cmake "--color=" -[ 23%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o -MF CMakeFiles/sratools.dir/file-path.posix.cpp.o.d -o CMakeFiles/sratools.dir/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/file-path.posix.cpp -/usr/bin/ar qc ../../ilib/libngs-vdb.a "CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o" "CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o" "CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o" "CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o" "CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o" "CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o" "CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o" "CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o" -[ 23%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/perf_log.c.o +/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/Pileup.java:58: warning: no main description + * @return base at current Reference position + ^ +[ 13%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/ErrorMsg.cpp +[ 13%] Building CXX object tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o +[ 13%] Building CXX object libs/general-writer/CMakeFiles/general-writer.dir/general-writer.cpp.o Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupEvent.html... -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/perf_log.c.o -MF CMakeFiles/sam-dump.dir/perf_log.c.o.d -o CMakeFiles/sam-dump.dir/perf_log.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/perf_log.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build.make tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build.make tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o -MF CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o.d -o CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_cpp.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT libs/general-writer/CMakeFiles/general-writer.dir/general-writer.cpp.o -MF CMakeFiles/general-writer.dir/general-writer.cpp.o.d -o CMakeFiles/general-writer.dir/general-writer.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/general-writer/general-writer.cpp /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/PileupEvent.java:118: warning: no comment static int alignment_minus_strand = 0x20; ^ -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/PileupEvent.java:116: warning: no comment static int alignment_start = 0x80; ^ @@ -3199,19 +2843,13 @@ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/PileupEvent.java:98: warning: no comment static int deletion = 2; ^ -/usr/bin/ranlib ../../ilib/libngs-vdb.a /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/PileupEvent.java:104: warning: no comment static int insertion = 0x08; ^ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/PileupEvent.java:112: warning: no comment -[ 23%] Building CXX object tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o static int insertion_before_deletion = insertion | deletion; ^ -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/PileupEvent.java:107: warning: no comment -[ 23%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o -MF CMakeFiles/sff-dump.dir/core.c.o.d -o CMakeFiles/sff-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o -MF CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o.d -o CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-validate/check-corrupt.cpp static int insertion_before_match = insertion | match; ^ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/PileupEvent.java:108: warning: no comment @@ -3219,13 +2857,10 @@ ^ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/PileupEvent.java:180: warning: no comment static int intron_minus = 2; -[ 23%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/main.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/main.c.o -MF CMakeFiles/vdb-validate.dir/main.c.o.d -o CMakeFiles/vdb-validate.dir/main.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-validate/main.c ^ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/PileupEvent.java:179: warning: no comment static int intron_plus = 1; ^ -[ 23%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/PileupEvent.java:181: warning: no comment static int intron_unknown = 3; ^ @@ -3236,54 +2871,29 @@ static int read_gap = 5; ^ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/PileupEvent.java:186: warning: no comment -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o -MF CMakeFiles/ngs.dir/NGS_Pileup.c.o.d -o CMakeFiles/ngs.dir/NGS_Pileup.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Pileup.c static int read_overlap = 4; ^ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/PileupEvent.java:113: warning: no comment static int replacement = insertion_before_deletion; ^ -[ 23%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_checkbox.c.o -[ 23%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -MF CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o.d -o CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/ErrorMsg.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_checkbox.c.o -MF CMakeFiles/tui.dir/tui_widget_checkbox.c.o.d -o CMakeFiles/tui.dir/tui_widget_checkbox.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_checkbox.c -[ 23%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o -MF CMakeFiles/fasterq-dump.dir/arg_helper.c.o.d -o CMakeFiles/fasterq-dump.dir/arg_helper.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/arg_helper.c +Note: Some input files use or override a deprecated API. +Note: Recompile with -Xlint:deprecation for details. +1 warning +[ 13%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_ReadIteratorItf.cpp Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupEventIterator.html... -make -f tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/DependInfo.cmake "--color=" -[ 23%] Built target ngs-bind-c++ -[ 23%] Built target loader -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 23%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o -MF CMakeFiles/sratools.dir/proc.posix.cpp.o.d -o CMakeFiles/sratools.dir/proc.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/proc.posix.cpp -[ 23%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -[ 23%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_grid.c.o +[ 13%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/adapter/ErrBlock.cpp Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupIterator.html... -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_grid.c.o -MF CMakeFiles/tui.dir/tui_widget_grid.c.o.d -o CMakeFiles/tui.dir/tui_widget_grid.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_grid.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_ReadIteratorItf.cpp -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c: In function 'KMain': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 1011 | ReportBuildDate ( __DATE__ ); - | ^~~~~~~~ -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Read.html... -[ 23%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o -MF CMakeFiles/sra-pileup.dir/out_redir.c.o.d -o CMakeFiles/sra-pileup.dir/out_redir.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/out_redir.c -[ 23%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-decrypt\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o -MF CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o.d -o CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-decrypt/vdb-decrypt.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir/java_compiled_ngs-java +[ 13%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/Read.java:35: warning: no comment +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_ReadGroupItf.cpp public interface Read ^ -[ 23%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o -[ 23%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-coldefs.c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/Read.java:79: warning: no comment static int aligned = fullyAligned | partiallyAligned; -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-tools.c ^ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/Read.java:81: warning: no comment static int all = aligned | unaligned; @@ -3293,23 +2903,13 @@ ^ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/Read.java:80: warning: no comment static int unaligned = 4; -[ 23%] Built target fastqloader ^ -[ 23%] Built target ngs-vdb -[ 23%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/perf_log.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/perf_log.c.o -MF CMakeFiles/sra-pileup.dir/perf_log.c.o.d -o CMakeFiles/sra-pileup.dir/perf_log.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/perf_log.c -[ 23%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o -MF CMakeFiles/vdb-validate.dir/vdb-validate.c.o.d -o CMakeFiles/vdb-validate.dir/vdb-validate.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-validate/vdb-validate.c -[ 23%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/core.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/core.c.o -MF CMakeFiles/illumina-dump.dir/core.c.o.d -o CMakeFiles/illumina-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c -[ 23%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_inputline.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_inputline.c.o -MF CMakeFiles/tui.dir/tui_widget_inputline.c.o.d -o CMakeFiles/tui.dir/tui_widget_inputline.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_inputline.c -[ 23%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/rna_splice_log.c.o -[ 23%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_label.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/rna_splice_log.c.o -MF CMakeFiles/sam-dump.dir/rna_splice_log.c.o.d -o CMakeFiles/sam-dump.dir/rna_splice_log.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/rna_splice_log.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_label.c.o -MF CMakeFiles/tui.dir/tui_widget_label.c.o.d -o CMakeFiles/tui.dir/tui_widget_label.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_label.c -[ 24%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_progress.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_progress.c.o -MF CMakeFiles/tui.dir/tui_widget_progress.c.o.d -o CMakeFiles/tui.dir/tui_widget_progress.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_progress.c +[ 13%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -MF CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o.d -o CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/FragmentBlob.cpp +[ 13%] Building C object libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ascp -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -Wno-unused-result -MD -MT libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o -MF CMakeFiles/ascp.dir/unix/connect.c.o.d -o CMakeFiles/ascp.dir/unix/connect.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ascp/unix/connect.c +[ 13%] Generating CMakeFiles/ngs-java.dir/java_class_filelist +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.30/Modules/UseJava/ClassFilelist.cmake Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadCollection.html... /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/ReadCollection.java:88: warning: no main description * @param spec the name of a contained read group @@ -3317,103 +2917,30 @@ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/ReadCollection.java:121: warning: no main description * @param spec the name of a contained Reference ^ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c: In function 'KMain': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 1011 | ReportBuildDate ( __DATE__ ); - | ^~~~~~~~ -[ 24%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/reref.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/reref.c.o -MF CMakeFiles/sra-pileup.dir/reref.c.o.d -o CMakeFiles/sra-pileup.dir/reref.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/reref.c -[ 24%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_ReadIteratorItf.cpp -[ 24%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o -MF CMakeFiles/sff-dump.dir/sff.c.o.d -o CMakeFiles/sff-dump.dir/sff.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/sff.c -[ 24%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o -[ 24%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/shared.c.o -[ 24%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tool_ctx.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o -MF CMakeFiles/tui.dir/tui_widget_radiobox.c.o.d -o CMakeFiles/tui.dir/tui_widget_radiobox.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_radiobox.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tool_ctx.c.o -MF CMakeFiles/fasterq-dump.dir/tool_ctx.c.o.d -o CMakeFiles/fasterq-dump.dir/tool_ctx.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/tool_ctx.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-decrypt\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/shared.c.o -MF CMakeFiles/vdb-decrypt.dir/shared.c.o.d -o CMakeFiles/vdb-decrypt.dir/shared.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-decrypt/shared.c -[ 24%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/illumina.c.o -[ 24%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -[ 24%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/illumina.c.o -MF CMakeFiles/illumina-dump.dir/illumina.c.o.d -o CMakeFiles/illumina-dump.dir/illumina.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/illumina.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_ReferenceItf.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -MF CMakeFiles/ngs.dir/NGS_ReadGroup.c.o.d -o CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_ReadGroup.c -[ 24%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/dflt_defline.c.o -[ 24%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump-opts.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/dflt_defline.c.o -MF CMakeFiles/fasterq-dump.dir/dflt_defline.c.o.d -o CMakeFiles/fasterq-dump.dir/dflt_defline.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/dflt_defline.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump-opts.c.o -MF CMakeFiles/sam-dump.dir/sam-dump-opts.c.o.d -o CMakeFiles/sam-dump.dir/sam-dump-opts.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sam-dump-opts.c Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadGroup.html... +[ 13%] Creating Java archive ngs-java.jar +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib/ngs-java.jar @java_class_filelist Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadGroupIterator.html... -[ 24%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/out_redir.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/out_redir.c.o -MF CMakeFiles/sam-dump.dir/out_redir.c.o.d -o CMakeFiles/sam-dump.dir/out_redir.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/out_redir.c Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadIterator.html... -[ 24%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/fasta_dump.c.o /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/ReadIterator.java:34: warning: no comment public interface ReadIterator ^ -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/fasta_dump.c.o -MF CMakeFiles/abi-dump.dir/fasta_dump.c.o.d -o CMakeFiles/abi-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/fasta_dump.c -[ 24%] Linking C executable ../../../bin/fastq-dump -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastq-dump.dir/link.txt --verbose=1 -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/tool_ctx.c: In function 'tctx_extract_short_accession': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/tool_ctx.c:348:22: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 348 | ReportBuildDate( __DATE__ ); - | ^~~~~~~~ Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Reference.html... -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/fastq-dump.dir/factory.c.o" "CMakeFiles/fastq-dump.dir/fasta_dump.c.o" "CMakeFiles/fastq-dump.dir/core.c.o" "CMakeFiles/fastq-dump.dir/fastq.c.o" -o ../../../bin/fastq-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -make -f tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/DependInfo.cmake "--color=" -[ 24%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o -MF CMakeFiles/fasterq-dump.dir/inspector.c.o.d -o CMakeFiles/fasterq-dump.dir/inspector.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/inspector.c -make -f tools/external/srapath/CMakeFiles/srapath.dir/build.make tools/external/srapath/CMakeFiles/srapath.dir/depend -[ 25%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/srapath /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/srapath /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/srapath/CMakeFiles/srapath.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-str.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/srapath/CMakeFiles/srapath.dir/build.make tools/external/srapath/CMakeFiles/srapath.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-stat/CMakeFiles/sra-stat.dir/build.make tools/external/sra-stat/CMakeFiles/sra-stat.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-stat /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat/CMakeFiles/sra-stat.dir/DependInfo.cmake "--color=" -[ 25%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-decrypt\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o -MF CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o.d -o CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-decrypt/vdb-encrypt.c -[ 25%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/helper.c.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-stat/CMakeFiles/sra-stat.dir/build.make tools/external/sra-stat/CMakeFiles/sra-stat.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/srapath && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/srapath\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/helper.c.o -MF CMakeFiles/srapath.dir/helper.c.o.d -o CMakeFiles/srapath.dir/helper.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/srapath/helper.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 25%] Building C object tools/external/sra-stat/CMakeFiles/sra-stat.dir/assembly-statistics.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-stat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-stat/CMakeFiles/sra-stat.dir/assembly-statistics.c.o -MF CMakeFiles/sra-stat.dir/assembly-statistics.c.o.d -o CMakeFiles/sra-stat.dir/assembly-statistics.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-stat/assembly-statistics.c +[ 14%] Linking CXX executable ../../../test-bin/ngs-makedb +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-makedb.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o" -o ../../../test-bin/ngs-makedb -Wl,-Bstatic -lktst -lkapp -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +[ 14%] Building C object libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/diagnose && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/diagnose -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o -MF CMakeFiles/diagnose.dir/endpoint.c.o.d -o CMakeFiles/diagnose.dir/endpoint.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/diagnose/endpoint.c +[ 14%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_ReferenceItf.cpp Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReferenceIterator.html... -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f fastq-dump.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv fastq-dump fastq-dump.3.0.9 -make -f tools/external/rcexplain/CMakeFiles/rcexplain.dir/build.make tools/external/rcexplain/CMakeFiles/rcexplain.dir/depend Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReferenceSequence.html... -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/rcexplain /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr.c.o -MF CMakeFiles/sam-dump.dir/sam-hdr.c.o.d -o CMakeFiles/sam-dump.dir/sam-hdr.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sam-hdr.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.0.9 fastq-dump-driver -[ 26%] Building C object tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-stat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra.c.o -MF CMakeFiles/sra-stat.dir/sra.c.o.d -o CMakeFiles/sra-stat.dir/sra.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-stat/sra.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/rcexplain/CMakeFiles/rcexplain.dir/build.make tools/external/rcexplain/CMakeFiles/rcexplain.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 26%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_spin_edit.c.o +[ 14%] Linking C static library ../../ilib/libloader.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cmake -P CMakeFiles/loader.dir/cmake_clean_target.cmake +[ 15%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_ReferenceIteratorItf.cpp Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Statistics.html... -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_spin_edit.c.o -MF CMakeFiles/tui.dir/tui_widget_spin_edit.c.o.d -o CMakeFiles/tui.dir/tui_widget_spin_edit.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_spin_edit.c -[ 26%] Linking CXX static library ../../../ilib/libngs-disp.a -[ 26%] Built target fastq-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/Statistics.java:41: warning: no comment -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/cmake -P CMakeFiles/ngs-disp.dir/cmake_clean_target.cmake static int int64 = 2; ^ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/Statistics.java:43: warning: no comment @@ -3424,106 +2951,484 @@ ^ /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/ngs/Statistics.java:42: warning: no comment static int uint64 = 3; -[ 27%] Building C object tools/external/rcexplain/CMakeFiles/rcexplain.dir/rcexplain.c.o ^ -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/rcexplain && /usr/bin/cc -DLINUX -DNDEBUG 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/usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-disp.dir/link.txt --verbose=1 -[ 27%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-helper.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/loader.dir/link.txt --verbose=1 Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-summary.html... -[ 27%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o -/usr/bin/ar qc ../../../ilib/libngs-disp.a "CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "CMakeFiles/ngs-disp.dir/VTable.cpp.o" "CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" -[ 27%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-formats.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o -MF CMakeFiles/ngs.dir/NGS_Alignment.c.o.d -o CMakeFiles/ngs.dir/NGS_Alignment.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Alignment.c +[ 15%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_ReadIteratorItf.cpp +[ 16%] Building C object libs/ascp/CMakeFiles/ascp.dir/linux/ascp-path.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ascp -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/ascp/CMakeFiles/ascp.dir/linux/ascp-path.c.o -MF CMakeFiles/ascp.dir/linux/ascp-path.c.o.d -o CMakeFiles/ascp.dir/linux/ascp-path.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ascp/linux/ascp-path.c Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-tree.html... +/usr/bin/ar qc ../../ilib/libloader.a CMakeFiles/loader.dir/progressbar.c.o "CMakeFiles/loader.dir/loader-file.c.o" "CMakeFiles/loader.dir/loader-meta.c.o" "CMakeFiles/loader.dir/queue-file.c.o" "CMakeFiles/loader.dir/alignment-writer.c.o" "CMakeFiles/loader.dir/common-reader.c.o" "CMakeFiles/loader.dir/common-writer.c.o" CMakeFiles/loader.dir/mmarray.c.o "CMakeFiles/loader.dir/reference-writer.c.o" "CMakeFiles/loader.dir/sequence-writer.c.o" Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/package-summary.html... -[ 27%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-redir.c -[ 27%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/shared.c.o Generating 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CMakeFiles/vdb-encrypt.dir/shared.c.o.d -o CMakeFiles/vdb-encrypt.dir/shared.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-decrypt/shared.c +/usr/bin/ranlib ../../ilib/libloader.a Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/constant-values.html... +[ 17%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/VdbReference.cpp Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/serialized-form.html... -[ 27%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o -MF CMakeFiles/sra-pileup.dir/cg_tools.c.o.d -o CMakeFiles/sra-pileup.dir/cg_tools.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/cg_tools.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/overview-tree.html... -/usr/bin/ranlib ../../../ilib/libngs-disp.a Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/index.html... -[ 27%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_ReadItf.cpp -[ 27%] Linking C executable ../../../bin/rcexplain -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/rcexplain && /usr/bin/cmake -E cmake_link_script CMakeFiles/rcexplain.dir/link.txt --verbose=1 -[ 27%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/core.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/core.c.o -MF CMakeFiles/abi-dump.dir/core.c.o.d -o CMakeFiles/abi-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c -[ 27%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/abi.c.o -[ 27%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/abi.c.o -MF CMakeFiles/abi-dump.dir/abi.c.o.d -o CMakeFiles/abi-dump.dir/abi.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/abi.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o -MF CMakeFiles/ngs.dir/NGS_Reference.c.o.d -o CMakeFiles/ngs.dir/NGS_Reference.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Reference.c -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/rcexplain.dir/rcexplain.c.o -o ../../../bin/rcexplain /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 27%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o +[ 17%] Built target loader +make -f tools/external/vdb-config/tui/CMakeFiles/tui.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui/CMakeFiles/tui.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 17%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_ReferenceSequenceItf.cpp +[ 17%] Built target ngs-makedb +make -f tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build.make tools/external/sra-dump/CMakeFiles/fastq-dump.dir/depend Building index for all classes... -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o -MF CMakeFiles/fasterq-dump.dir/sbuffer.c.o.d -o CMakeFiles/fasterq-dump.dir/sbuffer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/sbuffer.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/allclasses-index.html... +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump/CMakeFiles/fastq-dump.dir/DependInfo.cmake "--color=" +make -f tools/external/vdb-config/tui/CMakeFiles/tui.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' Generating 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Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/index-all.html... -[ 27%] Linking C executable ../../../bin/vdb-decrypt -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-decrypt.dir/link.txt --verbose=1 -[ 27%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o +[ 17%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/ReadGroupItf.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build.make tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build +[ 17%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o -MF CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o.d -o CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/ReferenceBlob.cpp +[ 18%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/dir_dlg.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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-I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/factory.c.o -MF CMakeFiles/fastq-dump.dir/factory.c.o.d -o CMakeFiles/fastq-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/factory.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=ngs-java.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.30/Modules/UseJava/Symlinks.cmake +52 warnings +[ 18%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_ReadItf.cpp +[ 18%] Linking CXX static library ../../../ilib/libngs-adapt-c++.a +[ 18%] Linking C static library ../../ilib/libascp.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/cmake -P CMakeFiles/ngs-adapt-c++.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cmake -P CMakeFiles/ascp.dir/cmake_clean_target.cmake +[ 18%] Built target ngs-java +make -f tools/external/sra-dump/CMakeFiles/sff-dump.dir/build.make tools/external/sra-dump/CMakeFiles/sff-dump.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump/CMakeFiles/sff-dump.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-adapt-c++.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-dump/CMakeFiles/sff-dump.dir/build.make tools/external/sra-dump/CMakeFiles/sff-dump.dir/build +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ascp.dir/link.txt --verbose=1 +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +/usr/bin/ar qc ../../../ilib/libngs-adapt-c++.a "CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o" +/usr/bin/ar qc ../../ilib/libascp.a CMakeFiles/ascp.dir/ascp.c.o CMakeFiles/ascp.dir/unix/connect.c.o "CMakeFiles/ascp.dir/linux/ascp-path.c.o" +[ 18%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o +[ 18%] Built target ngs-doc_javadoc +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o -MF CMakeFiles/sff-dump.dir/factory.c.o.d -o CMakeFiles/sff-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/factory.c +make -f tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build.make tools/external/sra-dump/CMakeFiles/illumina-dump.dir/depend +/usr/bin/ranlib ../../../ilib/libngs-adapt-c++.a +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump/CMakeFiles/illumina-dump.dir/DependInfo.cmake "--color=" +/usr/bin/ranlib ../../ilib/libascp.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build.make tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 18%] Built target ngs-adapt-c++ +make -f tools/external/sra-dump/CMakeFiles/abi-dump.dir/build.make tools/external/sra-dump/CMakeFiles/abi-dump.dir/depend +[ 18%] Built target ascp +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/build.make tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/depend +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump/CMakeFiles/abi-dump.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/DependInfo.cmake "--color=" +[ 18%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/factory.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/factory.c.o -MF CMakeFiles/illumina-dump.dir/factory.c.o.d -o CMakeFiles/illumina-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/factory.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-dump/CMakeFiles/abi-dump.dir/build.make tools/external/sra-dump/CMakeFiles/abi-dump.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/build.make tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 18%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/eventring.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/eventring.c.o -MF CMakeFiles/tui.dir/eventring.c.o.d -o CMakeFiles/tui.dir/eventring.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/eventring.c +[ 18%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/factory.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/factory.c.o -MF CMakeFiles/abi-dump.dir/factory.c.o.d -o CMakeFiles/abi-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/factory.c +[ 19%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/dyn_string.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/dyn_string.c.o -MF CMakeFiles/sra-pileup.dir/dyn_string.c.o.d -o CMakeFiles/sra-pileup.dir/dyn_string.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/dyn_string.c +[ 19%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_FragmentItf.cpp +[ 19%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_StatisticsItf.cpp +[ 19%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/file_dlg.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/file_dlg.c.o -MF CMakeFiles/tui.dir/file_dlg.c.o.d -o CMakeFiles/tui.dir/file_dlg.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/file_dlg.c +[ 19%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_Refcount.cpp +[ 19%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/ReadItf.cpp +[ 19%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_StringItf.cpp +[ 19%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -MF CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/FragmentItf.cpp +[ 19%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o -MF CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o.d -o CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/cmdline_cmn.c +[ 19%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o -MF CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o.d -o CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/ReferenceBlobIterator.cpp +[ 19%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o -MF CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/StatisticsItf.cpp +[ 19%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/VdbAlignment.cpp +[ 19%] Linking CXX static library ../../../../ilib/libtui_cpp.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -P CMakeFiles/tui_cpp.dir/cmake_clean_target.cmake +[ 19%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o -MF CMakeFiles/tui.dir/line_policy.c.o.d -o CMakeFiles/tui.dir/line_policy.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/line_policy.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -E cmake_link_script CMakeFiles/tui_cpp.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../ilib/libtui_cpp.a CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o +/usr/bin/ranlib ../../../../ilib/libtui_cpp.a +[ 19%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_StatisticsItf.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 19%] Built target tui_cpp +make -f tools/external/sra-pileup/CMakeFiles/sam-dump.dir/build.make tools/external/sra-pileup/CMakeFiles/sam-dump.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup/CMakeFiles/sam-dump.dir/DependInfo.cmake "--color=" +[ 19%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_Package.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-pileup/CMakeFiles/sam-dump.dir/build.make tools/external/sra-pileup/CMakeFiles/sam-dump.dir/build +[ 19%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o -MF CMakeFiles/sra-pileup.dir/out_redir.c.o.d -o CMakeFiles/sra-pileup.dir/out_redir.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/out_redir.c +[ 19%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o -MF CMakeFiles/fastq-dump.dir/fasta_dump.c.o.d -o CMakeFiles/fastq-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/fasta_dump.c +[ 19%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/inputfiles.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/inputfiles.c.o -MF CMakeFiles/sam-dump.dir/inputfiles.c.o.d -o CMakeFiles/sam-dump.dir/inputfiles.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/inputfiles.c +[ 19%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o -MF CMakeFiles/sff-dump.dir/fasta_dump.c.o.d -o CMakeFiles/sff-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/fasta_dump.c +[ 19%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/fasta_dump.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/fasta_dump.c.o -MF CMakeFiles/illumina-dump.dir/fasta_dump.c.o.d -o CMakeFiles/illumina-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/fasta_dump.c +[ 19%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/core.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/core.c.o -MF CMakeFiles/illumina-dump.dir/core.c.o.d -o CMakeFiles/illumina-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c +[ 19%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/fasta_dump.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/fasta_dump.c.o -MF CMakeFiles/abi-dump.dir/fasta_dump.c.o.d -o CMakeFiles/abi-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/fasta_dump.c +[ 19%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/core.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/core.c.o -MF CMakeFiles/abi-dump.dir/core.c.o.d -o CMakeFiles/abi-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c +[ 19%] Linking CXX static library ../../../../ilib/libngs-bind-python.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/cmake -P CMakeFiles/ngs-bind-python.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-bind-python.dir/link.txt --verbose=1 +[ 19%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/perf_log.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/perf_log.c.o -MF CMakeFiles/sra-pileup.dir/perf_log.c.o.d -o CMakeFiles/sra-pileup.dir/perf_log.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/perf_log.c +/usr/bin/ar qc ../../../../ilib/libngs-bind-python.a "CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" +[ 20%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PackageItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/PackageItf.cpp /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c: In function 'KMain': /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 1011 | ReportBuildDate ( __DATE__ ); | ^~~~~~~~ -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f rcexplain.3.0.9 -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o" "CMakeFiles/vdb-decrypt.dir/shared.c.o" -o ../../../bin/vdb-decrypt /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv rcexplain rcexplain.3.0.9 -[ 27%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s rcexplain.3.0.9 rcexplain.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o -MF CMakeFiles/tui.dir/tui_widget_string_list.c.o.d -o CMakeFiles/tui.dir/tui_widget_string_list.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_string_list.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s rcexplain.3 rcexplain +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c: In function 'KMain': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 1011 | ReportBuildDate ( __DATE__ ); + | ^~~~~~~~ +[ 20%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o -MF CMakeFiles/tui.dir/screen.c.o.d -o CMakeFiles/tui.dir/screen.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/screen.c +/usr/bin/ranlib ../../../../ilib/libngs-bind-python.a +[ 20%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o -MF CMakeFiles/ngs-disp.dir/StringItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/StringItf.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 28%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o -[ 28%] Building C object tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra-stat.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o -MF CMakeFiles/fasterq-dump.dir/err_msg.c.o.d -o CMakeFiles/fasterq-dump.dir/err_msg.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/err_msg.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-stat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra-stat.c.o -MF CMakeFiles/sra-stat.dir/sra-stat.c.o.d -o CMakeFiles/sra-stat.dir/sra-stat.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-stat/sra-stat.c -[ 28%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/report_deletes.c.o +[ 20%] Built target ngs-bind-python +make -f tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/build.make tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/DependInfo.cmake "--color=" +[ 20%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -MF CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o.d -o CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/NGS-VDB.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/build.make tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 20%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/illumina.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/illumina.c.o -MF CMakeFiles/illumina-dump.dir/illumina.c.o.d -o CMakeFiles/illumina-dump.dir/illumina.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/illumina.c +[ 20%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o +[ 20%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/perf_log.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o -MF CMakeFiles/ngs-disp.dir/Refcount.cpp.o.d -o CMakeFiles/ngs-disp.dir/Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/Refcount.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/perf_log.c.o -MF CMakeFiles/sam-dump.dir/perf_log.c.o.d -o CMakeFiles/sam-dump.dir/perf_log.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/perf_log.c +[ 20%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/helper.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/helper.c.o -MF CMakeFiles/fasterq-dump.dir/helper.c.o.d -o CMakeFiles/fasterq-dump.dir/helper.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/helper.c +[ 20%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_String.cpp +[ 20%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o -MF CMakeFiles/fastq-dump.dir/core.c.o.d -o CMakeFiles/fastq-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c +[ 20%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/reref.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/reref.c.o -MF CMakeFiles/sra-pileup.dir/reref.c.o.d -o CMakeFiles/sra-pileup.dir/reref.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/reref.c +[ 21%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_Refcount.cpp +[ 21%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o -MF CMakeFiles/sff-dump.dir/core.c.o.d -o CMakeFiles/sff-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c +[ 21%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/abi.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/abi.c.o -MF CMakeFiles/abi-dump.dir/abi.c.o.d -o CMakeFiles/abi-dump.dir/abi.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/abi.c +[ 21%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/rna_splice_log.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/rna_splice_log.c.o -MF CMakeFiles/sam-dump.dir/rna_splice_log.c.o.d -o CMakeFiles/sam-dump.dir/rna_splice_log.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/rna_splice_log.c +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c: In function 'KMain': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 1011 | ReportBuildDate ( __DATE__ ); + | ^~~~~~~~ +[ 21%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o -MF CMakeFiles/tui.dir/string_cache.c.o.d -o CMakeFiles/tui.dir/string_cache.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/string_cache.c +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c: In function 'KMain': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 1011 | ReportBuildDate ( __DATE__ ); + | ^~~~~~~~ +[ 21%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_ErrorMsg.cpp +[ 21%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o -MF CMakeFiles/ngs-disp.dir/VTable.cpp.o.d -o CMakeFiles/ngs-disp.dir/VTable.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/VTable.cpp +[ 21%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump-opts.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump-opts.c.o -MF CMakeFiles/sam-dump.dir/sam-dump-opts.c.o.d -o CMakeFiles/sam-dump.dir/sam-dump-opts.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sam-dump-opts.c +make -f tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/build.make tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/DependInfo.cmake "--color=" +[ 21%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o -MF CMakeFiles/tui.dir/tui.c.o.d -o CMakeFiles/tui.dir/tui.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui.c +[ 21%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o -MF CMakeFiles/sra-pileup.dir/cg_tools.c.o.d -o CMakeFiles/sra-pileup.dir/cg_tools.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/cg_tools.c +[ 21%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o -MF CMakeFiles/fasterq-dump.dir/arg_helper.c.o.d -o CMakeFiles/fasterq-dump.dir/arg_helper.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/arg_helper.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/build.make tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/build +[ 21%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o +[ 21%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -MF CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o.d -o CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/ErrBlock.cpp +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o -MF CMakeFiles/tui.dir/tui_dlg.c.o.d -o CMakeFiles/tui.dir/tui_dlg.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_dlg.c +[ 21%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -MF CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o.d -o CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/dispatch/ErrorMsg.cpp +[ 21%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-context.c +[ 21%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-coldefs.c +[ 21%] Linking CXX static library ../../ilib/libngs-vdb.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/cmake -P CMakeFiles/ngs-vdb.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-vdb.dir/link.txt --verbose=1 +[ 21%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/dflt_defline.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/dflt_defline.c.o -MF CMakeFiles/fasterq-dump.dir/dflt_defline.c.o.d -o CMakeFiles/fasterq-dump.dir/dflt_defline.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/dflt_defline.c +[ 21%] Linking CXX static library ../../../../ilib/libngs-bind-java.a +/usr/bin/ar qc ../../ilib/libngs-vdb.a "CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o" "CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o" "CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o" "CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o" "CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o" "CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o" "CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o" "CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/cmake -P CMakeFiles/ngs-bind-java.dir/cmake_clean_target.cmake +make -f tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build.make tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/depend +/usr/bin/ranlib ../../ilib/libngs-vdb.a +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-bind-java.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build.make tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +/usr/bin/ar qc ../../../../ilib/libngs-bind-java.a "CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o" +[ 21%] Built target ngs-vdb +make -f tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build.make tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/DependInfo.cmake "--color=" +[ 21%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg_helper.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg_helper.c.o -MF CMakeFiles/tui.dir/tui_dlg_helper.c.o.d -o CMakeFiles/tui.dir/tui_dlg_helper.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_dlg_helper.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +/usr/bin/ranlib ../../../../ilib/libngs-bind-java.a +[ 21%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/main.c.o +make -f tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build.make tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/main.c.o -MF CMakeFiles/vdb-validate.dir/main.c.o.d -o CMakeFiles/vdb-validate.dir/main.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-validate/main.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 21%] Building CXX object tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o -MF CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o.d -o 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/DependInfo.cmake "--color=" +[ 21%] Linking C executable ../../../bin/illumina-dump +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/build +[ 21%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tool_ctx.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/illumina-dump.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tool_ctx.c.o -MF CMakeFiles/fasterq-dump.dir/tool_ctx.c.o.d -o CMakeFiles/fasterq-dump.dir/tool_ctx.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/tool_ctx.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/illumina-dump.dir/factory.c.o" "CMakeFiles/illumina-dump.dir/fasta_dump.c.o" "CMakeFiles/illumina-dump.dir/core.c.o" "CMakeFiles/illumina-dump.dir/illumina.c.o" -o ../../../bin/illumina-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 21%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-decrypt\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o -MF CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o.d -o CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-decrypt/vdb-decrypt.c +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/tool_ctx.c: In function 'tctx_extract_short_accession': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/tool_ctx.c:348:22: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 348 | ReportBuildDate( __DATE__ ); + | ^~~~~~~~ +[ 21%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/out_redir.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o -MF CMakeFiles/fasterq-dump.dir/inspector.c.o.d -o CMakeFiles/fasterq-dump.dir/inspector.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/inspector.c +[ 22%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_menu.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_menu.c.o -MF CMakeFiles/tui.dir/tui_menu.c.o.d -o CMakeFiles/tui.dir/tui_menu.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_menu.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/abi-dump.dir/link.txt --verbose=1 +[ 22%] Linking CXX static library ../../../ilib/libngs-disp.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/cmake -P CMakeFiles/ngs-disp.dir/cmake_clean_target.cmake +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/abi-dump.dir/factory.c.o" "CMakeFiles/abi-dump.dir/fasta_dump.c.o" "CMakeFiles/abi-dump.dir/core.c.o" "CMakeFiles/abi-dump.dir/abi.c.o" -o ../../../bin/abi-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-disp.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f illumina-dump.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv illumina-dump illumina-dump.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s illumina-dump.3.0.9 illumina-dump.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s illumina-dump.3 illumina-dump +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +/usr/bin/ar qc ../../../ilib/libngs-disp.a "CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "CMakeFiles/ngs-disp.dir/VTable.cpp.o" "CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" +[ 22%] Built target illumina-dump +[ 22%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o +make -f tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/depend +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o -MF CMakeFiles/vdb-validate.dir/vdb-validate.c.o.d -o CMakeFiles/vdb-validate.dir/vdb-validate.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-validate/vdb-validate.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/DependInfo.cmake "--color=" +/usr/bin/ranlib ../../../ilib/libngs-disp.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 22%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-decrypt\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o -MF CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o.d -o CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-decrypt/vdb-encrypt.c +[ 22%] Built target ngs-disp +[ 22%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/shared.c.o +make -f tools/external/srapath/CMakeFiles/srapath.dir/build.make tools/external/srapath/CMakeFiles/srapath.dir/depend +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-decrypt\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/shared.c.o -MF CMakeFiles/vdb-decrypt.dir/shared.c.o.d -o CMakeFiles/vdb-decrypt.dir/shared.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-decrypt/shared.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f abi-dump.3.0.9 +[ 23%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr.c.o +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/srapath /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/srapath /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/srapath/CMakeFiles/srapath.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv abi-dump abi-dump.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr.c.o -MF CMakeFiles/sam-dump.dir/sam-hdr.c.o.d -o CMakeFiles/sam-dump.dir/sam-hdr.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sam-hdr.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s abi-dump.3.0.9 abi-dump.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s abi-dump.3 abi-dump +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/srapath/CMakeFiles/srapath.dir/build.make tools/external/srapath/CMakeFiles/srapath.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 23%] Building C object libs/general-writer/CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o +[ 23%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/general-writer/CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o -MF CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o.d -o CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/general-writer/utf8-like-int-codec.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-tools.c +[ 23%] Built target abi-dump +make -f tools/external/sra-stat/CMakeFiles/sra-stat.dir/build.make tools/external/sra-stat/CMakeFiles/sra-stat.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c: In function 'sqlite3DefaultRowEst': +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-stat /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat/CMakeFiles/sra-stat.dir/DependInfo.cmake "--color=" +[ 23%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/helper.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/srapath && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/srapath\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/helper.c.o -MF CMakeFiles/srapath.dir/helper.c.o.d -o CMakeFiles/srapath.dir/helper.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/srapath/helper.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-stat/CMakeFiles/sra-stat.dir/build.make tools/external/sra-stat/CMakeFiles/sra-stat.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 23%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fastq.c.o +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:102377:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] +102377 | if( pIdx->pPartIdxWhere!=0 ) a[0] -= 10; assert( 10==sqlite3LogEst(2) ); + | ^~ +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fastq.c.o -MF CMakeFiles/fastq-dump.dir/fastq.c.o.d -o CMakeFiles/fastq-dump.dir/fastq.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-dump/fastq.c +[ 23%] Building C object tools/external/sra-stat/CMakeFiles/sra-stat.dir/assembly-statistics.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-stat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-stat/CMakeFiles/sra-stat.dir/assembly-statistics.c.o -MF CMakeFiles/sra-stat.dir/assembly-statistics.c.o.d -o CMakeFiles/sra-stat.dir/assembly-statistics.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-stat/assembly-statistics.c +[ 23%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/shared.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-decrypt\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/shared.c.o -MF CMakeFiles/vdb-encrypt.dir/shared.c.o.d -o CMakeFiles/vdb-encrypt.dir/shared.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-decrypt/shared.c +In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:11540: +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:102377:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' +102377 | if( pIdx->pPartIdxWhere!=0 ) a[0] -= 10; assert( 10==sqlite3LogEst(2) ); + | ^~~~~~ +[ 23%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o -MF CMakeFiles/fasterq-dump.dir/sbuffer.c.o.d -o CMakeFiles/fasterq-dump.dir/sbuffer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/sbuffer.c +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:102378:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] +102378 | if( a[0]<33 ) a[0] = 33; assert( 33==sqlite3LogEst(10) ); + | ^~ +[ 23%] Linking C static library ../../ilib/libdiagnose.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/diagnose && /usr/bin/cmake -P CMakeFiles/diagnose.dir/cmake_clean_target.cmake +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:102378:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' +102378 | if( a[0]<33 ) a[0] = 33; assert( 33==sqlite3LogEst(10) ); + | ^~~~~~ +[ 23%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/report_deletes.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/report_deletes.c.o -MF CMakeFiles/sra-pileup.dir/report_deletes.c.o.d -o CMakeFiles/sra-pileup.dir/report_deletes.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/report_deletes.c -Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/search.html... -[ 29%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/line_iter.c.o -Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/overview-summary.html... +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/diagnose && /usr/bin/cmake -E cmake_link_script CMakeFiles/diagnose.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../ilib/libdiagnose.a CMakeFiles/diagnose.dir/diagnose.c.o CMakeFiles/diagnose.dir/endpoint.c.o +[ 23%] Building C object tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-stat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra.c.o -MF CMakeFiles/sra-stat.dir/sra.c.o.d -o CMakeFiles/sra-stat.dir/sra.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-stat/sra.c +[ 23%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr1.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr1.c.o -MF CMakeFiles/sam-dump.dir/sam-hdr1.c.o.d -o CMakeFiles/sam-dump.dir/sam-hdr1.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sam-hdr1.c +/usr/bin/ranlib ../../ilib/libdiagnose.a +[ 23%] Linking CXX static library ../../ilib/libgeneral-writer.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/cmake -P CMakeFiles/general-writer.dir/cmake_clean_target.cmake +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 23%] Built target diagnose +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/cmake -E cmake_link_script CMakeFiles/general-writer.dir/link.txt --verbose=1 +make -f tools/external/rcexplain/CMakeFiles/rcexplain.dir/build.make tools/external/rcexplain/CMakeFiles/rcexplain.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/rcexplain /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/rcexplain /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/rcexplain/CMakeFiles/rcexplain.dir/DependInfo.cmake "--color=" +[ 23%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_regions.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_regions.c.o -MF CMakeFiles/sra-pileup.dir/ref_regions.c.o.d -o CMakeFiles/sra-pileup.dir/ref_regions.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/ref_regions.c +/usr/bin/ar qc ../../ilib/libgeneral-writer.a "CMakeFiles/general-writer.dir/general-writer.cpp.o" "CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o" +[ 23%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_palette.c.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/rcexplain/CMakeFiles/rcexplain.dir/build.make tools/external/rcexplain/CMakeFiles/rcexplain.dir/build +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_palette.c.o -MF CMakeFiles/tui.dir/tui_palette.c.o.d -o CMakeFiles/tui.dir/tui_palette.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_palette.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 24%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o -MF CMakeFiles/fasterq-dump.dir/err_msg.c.o.d -o CMakeFiles/fasterq-dump.dir/err_msg.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/err_msg.c +/usr/bin/ranlib ../../ilib/libgeneral-writer.a +[ 25%] Building C object tools/external/rcexplain/CMakeFiles/rcexplain.dir/rcexplain.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/rcexplain && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/util\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/rcexplain/CMakeFiles/rcexplain.dir/rcexplain.c.o -MF CMakeFiles/rcexplain.dir/rcexplain.c.o.d -o CMakeFiles/rcexplain.dir/rcexplain.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/rcexplain/rcexplain.c +[ 26%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/line_iter.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/srapath && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/srapath\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/line_iter.c.o -MF CMakeFiles/srapath.dir/line_iter.c.o.d -o CMakeFiles/srapath.dir/line_iter.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/srapath/line_iter.c -Generating /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/help-doc.html... -[ 29%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_tabhdr.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_tabhdr.c.o -MF CMakeFiles/tui.dir/tui_widget_tabhdr.c.o.d -o CMakeFiles/tui.dir/tui_widget_tabhdr.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_tabhdr.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 26%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o +[ 26%] Built target general-writer +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o -MF CMakeFiles/fasterq-dump.dir/file_tools.c.o.d -o CMakeFiles/fasterq-dump.dir/file_tools.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/file_tools.c +make -f tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/build.make tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/kdbmeta /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/kdbmeta /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/DependInfo.cmake "--color=" +[ 26%] Linking C executable ../../../bin/vdb-decrypt +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-decrypt.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o" "CMakeFiles/vdb-decrypt.dir/shared.c.o" -o ../../../bin/vdb-decrypt /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/build.make tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/build +[ 27%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o +cd 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/kdbmeta.c.o -MF CMakeFiles/kdbmeta.dir/kdbmeta.c.o.d -o CMakeFiles/kdbmeta.dir/kdbmeta.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/kdbmeta/kdbmeta.c +[ 27%] Linking C executable ../../../bin/rcexplain +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/rcexplain && /usr/bin/cmake -E cmake_link_script CMakeFiles/rcexplain.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-decrypt.3.0.9 +[ 27%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_std_dlg.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-decrypt vdb-decrypt.3.0.9 -52 warnings +[ 27%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/rcexplain.dir/rcexplain.c.o -o ../../../bin/rcexplain /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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'/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 29%] Built target rcexplain -[ 29%] Built target vdb-decrypt -make -f tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/build.make tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/depend +[ 27%] Built target vdb-decrypt +[ 27%] Linking C executable ../../../bin/vdb-encrypt +make -f tools/external/align-info/CMakeFiles/align-info.dir/build.make tools/external/align-info/CMakeFiles/align-info.dir/depend +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-encrypt.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/kdbmeta 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/align-info/CMakeFiles/align-info.dir/DependInfo.cmake "--color=" +[ 27%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/repository-mgr.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/srapath && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/srapath\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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"CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o" "CMakeFiles/vdb-encrypt.dir/shared.c.o" -o ../../../bin/vdb-encrypt /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 27%] Building C object tools/external/align-info/CMakeFiles/align-info.dir/align-info.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/align-info && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/align-info\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration 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-I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra-stat.c.o -MF CMakeFiles/sra-stat.dir/sra-stat.c.o.d -o CMakeFiles/sra-stat.dir/sra-stat.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-stat/sra-stat.c +[ 27%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/flex_printer.c.o +[ 27%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/4na_ascii.c.o +cd 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/flex_printer.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv rcexplain rcexplain.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/4na_ascii.c.o -MF CMakeFiles/sra-pileup.dir/4na_ascii.c.o.d -o CMakeFiles/sra-pileup.dir/4na_ascii.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/4na_ascii.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s rcexplain.3.0.9 rcexplain.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s rcexplain.3 rcexplain make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 29%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_StatisticsItf.cpp -[ 29%] Building C object tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/kdbmeta.c.o -[ 29%] Built target ngs-doc_javadoc -[ 29%] Linking C executable ../../../bin/sff-dump -cd 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/kdbmeta/kdbmeta.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/sff-dump.dir/link.txt --verbose=1 -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/sff-dump.dir/factory.c.o" "CMakeFiles/sff-dump.dir/fasta_dump.c.o" "CMakeFiles/sff-dump.dir/core.c.o" "CMakeFiles/sff-dump.dir/sff.c.o" -o ../../../bin/sff-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 29%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -cd 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_Package.cpp /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/inspector.c: In function 'insp_report': /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/inspector.c:1165:14: warning: 'res' may be used uninitialized [-Wmaybe-uninitialized] 1165 | rc = KOutMsg( "... is %s\n", s_acc_type ); @@ -3531,139 +3436,60 @@ /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/inspector.c:248:18: note: 'res' was declared here 248 | const char * res; | ^~~ -[ 30%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_ReferenceIteratorItf.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sff-dump.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sff-dump sff-dump.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sff-dump.3.0.9 sff-dump.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sff-dump.3 sff-dump -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 30%] Built target ngs-disp -[ 30%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr1.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk 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-I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/repository-mgr.c.o -MF CMakeFiles/srapath.dir/repository-mgr.c.o.d -o CMakeFiles/srapath.dir/repository-mgr.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/srapath/repository-mgr.c -[ 30%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o -MF CMakeFiles/vdb-validate.dir/check-redact.c.o.d -o CMakeFiles/vdb-validate.dir/check-redact.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-validate/check-redact.c -[ 30%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/matecache.c.o -[ 30%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_regions.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/matecache.c.o -MF CMakeFiles/sam-dump.dir/matecache.c.o.d -o CMakeFiles/sam-dump.dir/matecache.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/matecache.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_regions.c.o -MF CMakeFiles/sra-pileup.dir/ref_regions.c.o.d -o CMakeFiles/sra-pileup.dir/ref_regions.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/ref_regions.c -[ 30%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o -[ 30%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -[ 30%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o -make -f tools/external/align-info/CMakeFiles/align-info.dir/build.make tools/external/align-info/CMakeFiles/align-info.dir/depend -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_ReferenceSequence.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o -MF CMakeFiles/fasterq-dump.dir/file_tools.c.o.d -o CMakeFiles/fasterq-dump.dir/file_tools.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/file_tools.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o -MF CMakeFiles/ngs.dir/NGS_Read.c.o.d -o CMakeFiles/ngs.dir/NGS_Read.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Read.c -[ 30%] Linking C executable ../../../bin/vdb-encrypt -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-encrypt.dir/link.txt --verbose=1 -[ 30%] Linking C executable ../../../bin/illumina-dump -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/4na_ascii.c.o -MF CMakeFiles/sra-pileup.dir/4na_ascii.c.o.d -o CMakeFiles/sra-pileup.dir/4na_ascii.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/4na_ascii.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-encrypt.3.0.9 +[ 27%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG 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mv vdb-encrypt vdb-encrypt.3.0.9 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-encrypt.3.0.9 vdb-encrypt.3 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-encrypt.3 vdb-encrypt make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f illumina-dump.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv illumina-dump illumina-dump.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s illumina-dump.3.0.9 illumina-dump.3 -[ 30%] Built target vdb-encrypt -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s illumina-dump.3 illumina-dump +[ 27%] Linking C executable ../../../bin/sff-dump +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake 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tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/flex_printer.c.o -MF CMakeFiles/fasterq-dump.dir/flex_printer.c.o.d -o CMakeFiles/fasterq-dump.dir/flex_printer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/flex_printer.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o -MF CMakeFiles/ngs.dir/NGS_Fragment.c.o.d -o CMakeFiles/ngs.dir/NGS_Fragment.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Fragment.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 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'/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 31%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker.c.o -MF CMakeFiles/sra-pileup.dir/ref_walker.c.o.d -o CMakeFiles/sra-pileup.dir/ref_walker.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/ref_walker.c -[ 31%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/matecache.c.o -MF CMakeFiles/sam-dump.dir/matecache.c.o.d -o CMakeFiles/sam-dump.dir/matecache.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/matecache.c +[ 28%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o -MF CMakeFiles/fasterq-dump.dir/progress_thread.c.o.d -o CMakeFiles/fasterq-dump.dir/progress_thread.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/progress_thread.c +[ 28%] Building C object tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/cache-mgr.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/cache-mgr && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cache-mgr\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/cache-mgr.c.o -MF CMakeFiles/cache-mgr.dir/cache-mgr.c.o.d -o CMakeFiles/cache-mgr.dir/cache-mgr.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/cache-mgr/cache-mgr.c -[ 32%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o -MF CMakeFiles/ngs.dir/NGS_Cursor.c.o.d -o CMakeFiles/ngs.dir/NGS_Cursor.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Cursor.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sff-dump.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sff-dump sff-dump.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sff-dump.3.0.9 sff-dump.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sff-dump.3 sff-dump make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 32%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o -MF CMakeFiles/ngs.dir/NGS_Refcount.c.o.d -o CMakeFiles/ngs.dir/NGS_Refcount.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Refcount.c -make -f tools/external/sra-info/CMakeFiles/sra-info.dir/build.make tools/external/sra-info/CMakeFiles/sra-info.dir/depend +[ 28%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cleanup_task.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cleanup_task.c.o -MF CMakeFiles/fasterq-dump.dir/cleanup_task.c.o.d -o CMakeFiles/fasterq-dump.dir/cleanup_task.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/cleanup_task.c +[ 28%] Built target sff-dump +make -f tools/external/driver-tool/CMakeFiles/sratools.dir/build.make tools/external/driver-tool/CMakeFiles/sratools.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-info /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info/CMakeFiles/sra-info.dir/DependInfo.cmake "--color=" -[ 32%] Built target Test_Drivertool_JsonParsing -[ 32%] Linking C static library ../../../../ilib/libtui.a -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -P CMakeFiles/tui.dir/cmake_clean_target.cmake -Note: Some input files use or override a deprecated API. -Note: Recompile with -Xlint:deprecation for details. -1 warning +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool/CMakeFiles/sratools.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-info/CMakeFiles/sra-info.dir/build.make tools/external/sra-info/CMakeFiles/sra-info.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/bam-loader/CMakeFiles/bam-load.dir/build.make tools/loaders/bam-loader/CMakeFiles/bam-load.dir/depend +make -f tools/external/driver-tool/CMakeFiles/sratools.dir/build.make tools/external/driver-tool/CMakeFiles/sratools.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader/CMakeFiles/bam-load.dir/DependInfo.cmake "--color=" -[ 32%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -E cmake_link_script CMakeFiles/tui.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o -MF CMakeFiles/sam-dump.dir/cg_tools.c.o.d -o CMakeFiles/sam-dump.dir/cg_tools.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/cg_tools.c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/cache-mgr/cache-mgr.c: In function 'perform_report': /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/cache-mgr/cache-mgr.c:702:16: warning: storing the address of local variable 'data' in '*octx.data' [-Wdangling-pointer=] 702 | octx->data = &data; @@ -3674,7 +3500,6 @@ /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/cache-mgr/cache-mgr.c:696:41: note: 'octx' declared here 696 | static rc_t perform_report( visit_ctx * octx ) | ~~~~~~~~~~~~^~~~ -[ 32%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/cache-mgr/cache-mgr.c: In function 'perform_unlock': /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/cache-mgr/cache-mgr.c:905:16: warning: storing the address of local variable 'data' in '*octx.data' [-Wdangling-pointer=] 905 | octx->data = &data; @@ -3685,7 +3510,6 @@ /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/cache-mgr/cache-mgr.c:899:41: note: 'octx' declared here 899 | static rc_t perform_unlock( visit_ctx * octx ) | ~~~~~~~~~~~~^~~~ -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o -MF CMakeFiles/sam-dump.dir/sam-dump.c.o.d -o CMakeFiles/sam-dump.dir/sam-dump.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sam-dump.c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/cache-mgr/cache-mgr.c: In function 'perform_clear': /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/cache-mgr/cache-mgr.c:990:16: warning: storing the address of local variable 'data' in '*octx.data' [-Wdangling-pointer=] 990 | octx->data = &data; @@ -3696,930 +3520,986 @@ /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/cache-mgr/cache-mgr.c:984:40: note: 'octx' declared here 984 | static rc_t perform_clear( visit_ctx * octx ) | ~~~~~~~~~~~~^~~~ -[ 32%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o +[ 28%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/sratools.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/sratools.cpp.o -MF CMakeFiles/sratools.dir/sratools.cpp.o.d -o CMakeFiles/sratools.dir/sratools.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/sratools.cpp +[ 28%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o -MF CMakeFiles/fasterq-dump.dir/index.c.o.d -o CMakeFiles/fasterq-dump.dir/index.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/index.c +[ 28%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_button.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_button.c.o -MF CMakeFiles/tui.dir/tui_widget_button.c.o.d -o CMakeFiles/tui.dir/tui_widget_button.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_button.c +[ 28%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_writer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_writer.c.o -MF CMakeFiles/fasterq-dump.dir/lookup_writer.c.o.d -o CMakeFiles/fasterq-dump.dir/lookup_writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/lookup_writer.c +[ 28%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker.c.o -MF CMakeFiles/sra-pileup.dir/ref_walker.c.o.d -o CMakeFiles/sra-pileup.dir/ref_walker.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/ref_walker.c +[ 28%] Linking C executable ../../../bin/align-info +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/align-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/align-info.dir/link.txt --verbose=1 +[ 29%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_reader.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_reader.c.o -MF CMakeFiles/fasterq-dump.dir/lookup_reader.c.o.d -o CMakeFiles/fasterq-dump.dir/lookup_reader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/lookup_reader.c +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/align-info.dir/align-info.c.o" -o ../../../bin/align-info /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 29%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_checkbox.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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tools/external/srapath/CMakeFiles/srapath.dir/cgi_request.c.o -MF CMakeFiles/srapath.dir/cgi_request.c.o.d -o CMakeFiles/srapath.dir/cgi_request.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/srapath/cgi_request.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s align-info.3 align-info make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/bam-loader/CMakeFiles/bam-load.dir/build.make tools/loaders/bam-loader/CMakeFiles/bam-load.dir/build -/usr/bin/ar qc ../../../../ilib/libtui.a CMakeFiles/tui.dir/dir_dlg.c.o CMakeFiles/tui.dir/eventring.c.o CMakeFiles/tui.dir/file_dlg.c.o CMakeFiles/tui.dir/line_policy.c.o CMakeFiles/tui.dir/screen.c.o CMakeFiles/tui.dir/string_cache.c.o CMakeFiles/tui.dir/tui.c.o CMakeFiles/tui.dir/tui_dlg.c.o CMakeFiles/tui.dir/tui_dlg_helper.c.o CMakeFiles/tui.dir/tui_menu.c.o CMakeFiles/tui.dir/tui_palette.c.o CMakeFiles/tui.dir/tui_std_dlg.c.o CMakeFiles/tui.dir/tui_widget.c.o CMakeFiles/tui.dir/tui_widget_button.c.o CMakeFiles/tui.dir/tui_widget_checkbox.c.o CMakeFiles/tui.dir/tui_widget_grid.c.o CMakeFiles/tui.dir/tui_widget_inputline.c.o CMakeFiles/tui.dir/tui_widget_label.c.o CMakeFiles/tui.dir/tui_widget_progress.c.o CMakeFiles/tui.dir/tui_widget_radiobox.c.o CMakeFiles/tui.dir/tui_widget_spin_edit.c.o CMakeFiles/tui.dir/tui_widget_string_list.c.o CMakeFiles/tui.dir/tui_widget_tabhdr.c.o CMakeFiles/tui.dir/linux/systui.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-info\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o -MF CMakeFiles/sra-info.dir/main.cpp.o.d -o CMakeFiles/sra-info.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-info/main.cpp +[ 29%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/read_fkt.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/read_fkt.c.o -MF CMakeFiles/sam-dump.dir/read_fkt.c.o.d -o CMakeFiles/sam-dump.dir/read_fkt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/read_fkt.c +[ 29%] Built target align-info +make -f tools/external/sra-info/CMakeFiles/sra-info.dir/build.make tools/external/sra-info/CMakeFiles/sra-info.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 32%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -[ 32%] Linking C executable ../../../bin/align-info -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_String.cpp -make -f tools/loaders/bam-loader/CMakeFiles/samview.dir/build.make tools/loaders/bam-loader/CMakeFiles/samview.dir/depend -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/align-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/align-info.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-info /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info/CMakeFiles/sra-info.dir/DependInfo.cmake "--color=" +[ 29%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_grid.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_grid.c.o -MF CMakeFiles/tui.dir/tui_widget_grid.c.o.d -o CMakeFiles/tui.dir/tui_widget_grid.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_grid.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-info/CMakeFiles/sra-info.dir/build.make tools/external/sra-info/CMakeFiles/sra-info.dir/build +[ 29%] Linking CXX executable ../../../bin/check-corrupt +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cmake -E cmake_link_script CMakeFiles/check-corrupt.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader/CMakeFiles/samview.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir/java_compiled_ngs-java -[ 33%] Linking C executable ../../../bin/kdbmeta +[ 29%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-info\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o -MF CMakeFiles/sra-info.dir/main.cpp.o.d -o CMakeFiles/sra-info.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-info/main.cpp +[ 29%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_printer.c.o +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o" -o ../../../bin/check-corrupt /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_printer.c.o -MF CMakeFiles/fasterq-dump.dir/file_printer.c.o.d -o CMakeFiles/fasterq-dump.dir/file_printer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/file_printer.c +[ 30%] Linking C executable ../../../bin/kdbmeta cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/kdbmeta && /usr/bin/cmake -E cmake_link_script CMakeFiles/kdbmeta.dir/link.txt --verbose=1 -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/align-info.dir/align-info.c.o" -o ../../../bin/align-info /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 33%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam-loader.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/kdbmeta.dir/kdbmeta.c.o -o ../../../bin/kdbmeta /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +[ 30%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/merge_sorter.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sorter.c.o -MF CMakeFiles/fasterq-dump.dir/sorter.c.o.d -o CMakeFiles/fasterq-dump.dir/sorter.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/sorter.c +[ 30%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f check-corrupt.3.0.9 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/cache-mgr.dir/cache-mgr.c.o" -o ../../../bin/cache-mgr /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv check-corrupt check-corrupt.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s check-corrupt.3.0.9 check-corrupt.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s check-corrupt.3 check-corrupt +[ 30%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o +[ 30%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam-loader.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT 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-I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o -MF CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/raw_read_iter.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/kar /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar/CMakeFiles/kar+.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader/CMakeFiles/samview.dir/DependInfo.cmake "--color=" +[ 30%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_inputline.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-Wl,-z,now CMakeFiles/kdbmeta.dir/kdbmeta.c.o -o ../../../bin/kdbmeta /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-info\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o -MF CMakeFiles/sra-info.dir/sra-info.cpp.o.d -o CMakeFiles/sra-info.dir/sra-info.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-info/sra-info.cpp -[ 33%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/bam.c.o +make -f tools/loaders/bam-loader/CMakeFiles/samview.dir/build.make tools/loaders/bam-loader/CMakeFiles/samview.dir/build +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-aligned.c.o -MF CMakeFiles/sam-dump.dir/sam-aligned.c.o.d -o CMakeFiles/sam-dump.dir/sam-aligned.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sam-aligned.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 30%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/walk_debug.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/walk_debug.c.o -MF CMakeFiles/sra-pileup.dir/walk_debug.c.o.d -o CMakeFiles/sra-pileup.dir/walk_debug.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/walk_debug.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f cache-mgr.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv cache-mgr cache-mgr.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s cache-mgr.3.0.9 cache-mgr.3 +[ 30%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/bam.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/bam.c.o -MF CMakeFiles/samview.dir/bam.c.o.d -o CMakeFiles/samview.dir/bam.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/bam.c -[ 33%] Generating CMakeFiles/ngs-java.dir/java_class_filelist -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.30/Modules/UseJava/ClassFilelist.cmake -[ 33%] Built target tui -[ 33%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/formatter.cpp.o -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/abi-dump.dir/factory.c.o" "CMakeFiles/abi-dump.dir/fasta_dump.c.o" "CMakeFiles/abi-dump.dir/core.c.o" "CMakeFiles/abi-dump.dir/abi.c.o" -o ../../../bin/abi-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s cache-mgr.3 cache-mgr make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o" -o ../../../bin/check-corrupt /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -make -f tools/loaders/kar/CMakeFiles/kar.dir/build.make tools/loaders/kar/CMakeFiles/kar.dir/build +[ 30%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_label.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_label.c.o -MF CMakeFiles/tui.dir/tui_widget_label.c.o.d -o CMakeFiles/tui.dir/tui_widget_label.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_label.c +[ 30%] Built target cache-mgr +make -f tools/loaders/kar/CMakeFiles/kar.dir/build.make tools/loaders/kar/CMakeFiles/kar.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-info\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/formatter.cpp.o -MF CMakeFiles/sra-info.dir/formatter.cpp.o.d -o CMakeFiles/sra-info.dir/formatter.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-info/formatter.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/kar /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar/CMakeFiles/kar.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 33%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_dir.c.o -make -f tools/loaders/kar/CMakeFiles/kar+.dir/build.make tools/loaders/kar/CMakeFiles/kar+.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_dir.c.o -MF CMakeFiles/fasterq-dump.dir/temp_dir.c.o.d -o CMakeFiles/fasterq-dump.dir/temp_dir.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/temp_dir.c +make -f tools/loaders/kar/CMakeFiles/kar.dir/build.make tools/loaders/kar/CMakeFiles/kar.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 33%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/walk_debug.c.o -[ 33%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/walk_debug.c.o -MF CMakeFiles/sra-pileup.dir/walk_debug.c.o.d -o 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ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/python/py_Refcount.cpp -[ 33%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o -MF CMakeFiles/fasterq-dump.dir/progress_thread.c.o.d -o CMakeFiles/fasterq-dump.dir/progress_thread.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/progress_thread.c -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sam-dump.c: In function 'SAM_Dump_Main': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sam-dump.c:4387:22: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 4387 | ReportBuildDate( __DATE__ ); - | ^~~~~~~~ -[ 33%] Building C object tools/loaders/kar/CMakeFiles/kar.dir/kar-path.c.o +[ 30%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o +[ 30%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/srapath.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/srapath && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/srapath\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/srapath.c.o -MF CMakeFiles/srapath.dir/srapath.c.o.d -o CMakeFiles/srapath.dir/srapath.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/srapath/srapath.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-fastq.c +[ 30%] Building C object tools/loaders/kar/CMakeFiles/kar.dir/kar-path.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar.dir/kar-path.c.o -MF CMakeFiles/kar.dir/kar-path.c.o.d -o CMakeFiles/kar.dir/kar-path.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/kar/kar-path.c -[ 33%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar-path.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar-path.c.o -MF CMakeFiles/kar+.dir/kar-path.c.o.d -o CMakeFiles/kar+.dir/kar-path.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/kar/kar-path.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f align-info.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f kdbmeta.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv align-info align-info.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv kdbmeta kdbmeta.3.0.9 -[ 33%] Creating Java archive ngs-java.jar -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s align-info.3.0.9 align-info.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kdbmeta.3.0.9 kdbmeta.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib/ngs-java.jar @java_class_filelist -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s align-info.3 align-info -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kdbmeta.3 kdbmeta -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 30%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/special_iter.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/special_iter.c.o -MF CMakeFiles/fasterq-dump.dir/special_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/special_iter.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/special_iter.c +[ 31%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_progress.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_progress.c.o -MF CMakeFiles/tui.dir/tui_widget_progress.c.o.d -o CMakeFiles/tui.dir/tui_widget_progress.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_progress.c +[ 31%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_counters.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_counters.c.o -MF CMakeFiles/sra-pileup.dir/pileup_counters.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_counters.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/pileup_counters.c +[ 31%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o -MF CMakeFiles/tui.dir/tui_widget_radiobox.c.o.d -o CMakeFiles/tui.dir/tui_widget_radiobox.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_radiobox.c +[ 31%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o -MF CMakeFiles/vdb-validate.dir/check-redact.c.o.d -o CMakeFiles/vdb-validate.dir/check-redact.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-validate/check-redact.c +[ 31%] Linking C executable ../../../bin/fastq-dump +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastq-dump.dir/link.txt --verbose=1 +In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/sratools.hpp:31, + from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/sratools.cpp:59: +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ^ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +[ 32%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o -MF CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/fq_seq_ua_iter.c +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/fastq-dump.dir/factory.c.o" "CMakeFiles/fastq-dump.dir/fasta_dump.c.o" "CMakeFiles/fastq-dump.dir/core.c.o" "CMakeFiles/fastq-dump.dir/fastq.c.o" -o ../../../bin/fastq-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 32%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/align_iter.c.o +[ 32%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o -MF CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/fq_seq_csra_iter.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/align_iter.c.o -MF CMakeFiles/fasterq-dump.dir/align_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/align_iter.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/align_iter.c +[ 32%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_spin_edit.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_spin_edit.c.o -MF CMakeFiles/tui.dir/tui_widget_spin_edit.c.o.d -o CMakeFiles/tui.dir/tui_widget_spin_edit.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_spin_edit.c +[ 32%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o -MF CMakeFiles/tui.dir/tui_widget_string_list.c.o.d -o CMakeFiles/tui.dir/tui_widget_string_list.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_string_list.c +[ 32%] Building C object tools/loaders/kar/CMakeFiles/kar.dir/kar-args.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar.dir/kar-args.c.o -MF CMakeFiles/kar.dir/kar-args.c.o.d -o CMakeFiles/kar.dir/kar-args.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/kar/kar-args.c +[ 32%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_tabhdr.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_tabhdr.c.o -MF CMakeFiles/tui.dir/tui_widget_tabhdr.c.o.d -o CMakeFiles/tui.dir/tui_widget_tabhdr.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/tui_widget_tabhdr.c +[ 32%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_index.c.o -MF CMakeFiles/sra-pileup.dir/pileup_index.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_index.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/pileup_index.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fastq-dump.3.0.9 fastq-dump.3 +[ 32%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fastq-dump.3 fastq-dump +[ 32%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o -MF CMakeFiles/sratools.dir/config.cpp.o.d -o CMakeFiles/sratools.dir/config.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/config.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o -MF CMakeFiles/fasterq-dump.dir/db_join.c.o.d -o CMakeFiles/fasterq-dump.dir/db_join.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/db_join.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.0.9 fastq-dump-driver make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f abi-dump.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv abi-dump abi-dump.3.0.9 -[ 34%] Linking C executable ../../../bin/vdb-validate -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s abi-dump.3.0.9 abi-dump.3 -[ 34%] Built target kdbmeta +[ 32%] Built target fastq-dump +make -f tools/loaders/kar/CMakeFiles/kar+.dir/build.make tools/loaders/kar/CMakeFiles/kar+.dir/depend +[ 32%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/linux/systui.c.o +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/kar /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar/CMakeFiles/kar+.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/linux/systui.c.o -MF CMakeFiles/tui.dir/linux/systui.c.o.d -o CMakeFiles/tui.dir/linux/systui.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/tui/linux/systui.c +[ 33%] Linking C executable ../../../bin/vdb-validate cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-validate.dir/link.txt --verbose=1 -[ 34%] Built target align-info -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s abi-dump.3 abi-dump -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 33%] Linking C executable ../../../bin/srapath +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/srapath && /usr/bin/cmake -E cmake_link_script CMakeFiles/srapath.dir/link.txt --verbose=1 /usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/vdb-validate.dir/main.c.o" "CMakeFiles/vdb-validate.dir/vdb-validate.c.o" "CMakeFiles/vdb-validate.dir/check-redact.c.o" -o ../../../bin/vdb-validate /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 34%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_counters.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar.dir/kar-args.c.o -MF CMakeFiles/kar.dir/kar-args.c.o.d -o CMakeFiles/kar.dir/kar-args.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/kar/kar-args.c -[ 35%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+args.c.o -[ 35%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/language/java/jni_Refcount.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+args.c.o -MF CMakeFiles/kar+.dir/kar+args.c.o.d -o CMakeFiles/kar+.dir/kar+args.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/kar/kar+args.c -[ 35%] Built target abi-dump -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f check-corrupt.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv check-corrupt check-corrupt.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s check-corrupt.3.0.9 check-corrupt.3 -[ 36%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+util.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+util.c.o -MF CMakeFiles/kar+.dir/kar+util.c.o.d -o CMakeFiles/kar+.dir/kar+util.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/kar/kar+util.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s check-corrupt.3 check-corrupt -[ 36%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o -[ 36%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o -MF CMakeFiles/ngs.dir/NGS_String.c.o.d -o CMakeFiles/ngs.dir/NGS_String.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_String.c -[ 36%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+print.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+.c.o -MF CMakeFiles/kar+.dir/kar+.c.o.d -o CMakeFiles/kar+.dir/kar+.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/kar/kar+.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+print.c.o -MF CMakeFiles/kar+.dir/kar+print.c.o.d -o CMakeFiles/kar+.dir/kar+print.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/kar/kar+print.c -[ 36%] Built target check-corrupt -[ 36%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/srapath.c.o +make -f tools/loaders/kar/CMakeFiles/kar+.dir/build.make tools/loaders/kar/CMakeFiles/kar+.dir/build +[ 33%] Building C object tools/loaders/kar/CMakeFiles/kar.dir/kar.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar.dir/kar.c.o -MF CMakeFiles/kar.dir/kar.c.o.d -o CMakeFiles/kar.dir/kar.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/kar/kar.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 33%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o +[ 33%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-info\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o -MF CMakeFiles/sra-info.dir/sra-info.cpp.o.d -o CMakeFiles/sra-info.dir/sra-info.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-info/sra-info.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o -MF CMakeFiles/fasterq-dump.dir/tbl_join.c.o.d -o CMakeFiles/fasterq-dump.dir/tbl_join.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/tbl_join.c +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/srapath.dir/helper.c.o CMakeFiles/srapath.dir/line_iter.c.o "CMakeFiles/srapath.dir/repository-mgr.c.o" CMakeFiles/srapath.dir/services.c.o CMakeFiles/srapath.dir/cgi_request.c.o CMakeFiles/srapath.dir/srapath.c.o -o ../../../bin/srapath /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 33%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar-path.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar-path.c.o -MF CMakeFiles/kar+.dir/kar-path.c.o.d -o CMakeFiles/kar+.dir/kar-path.c.o -c 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tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_indels.c.o -MF CMakeFiles/sra-pileup.dir/pileup_indels.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_indels.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/pileup_indels.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-validate.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/srapath && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/srapath\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/srapath.c.o -MF CMakeFiles/srapath.dir/srapath.c.o.d -o CMakeFiles/srapath.dir/srapath.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/srapath/srapath.c +[ 33%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam.c.o -MF CMakeFiles/bam-load.dir/bam.c.o.d -o CMakeFiles/bam-load.dir/bam.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/bam.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-validate vdb-validate.3.0.9 -make -f tools/loaders/kar/CMakeFiles/kar+meta.dir/build.make tools/loaders/kar/CMakeFiles/kar+meta.dir/depend cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-validate.3.0.9 vdb-validate.3 -[ 36%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -MF 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'/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 36%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cleanup_task.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cleanup_task.c.o -MF CMakeFiles/fasterq-dump.dir/cleanup_task.c.o.d -o CMakeFiles/fasterq-dump.dir/cleanup_task.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/cleanup_task.c -[ 36%] Building C object tools/loaders/kar/CMakeFiles/kar.dir/kar.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar/CMakeFiles/kar+meta.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f srapath.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv srapath srapath.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s srapath.3.0.9 srapath.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s srapath.3 srapath +[ 33%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_varcount.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_varcount.c.o -MF CMakeFiles/sra-pileup.dir/pileup_varcount.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_varcount.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/pileup_varcount.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.0.9 srapath-driver make -f tools/loaders/kar/CMakeFiles/kar+meta.dir/build.make tools/loaders/kar/CMakeFiles/kar+meta.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 36%] Built target vdb-validate -[ 36%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o -MF CMakeFiles/fasterq-dump.dir/index.c.o.d -o CMakeFiles/fasterq-dump.dir/index.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/index.c -[ 36%] Building C object tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+util.c.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 33%] Building C object tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+util.c.o +[ 33%] Built target srapath cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+util.c.o -MF CMakeFiles/kar+meta.dir/kar+util.c.o.d -o CMakeFiles/kar+meta.dir/kar+util.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/kar/kar+util.c -[ 36%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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-D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_index.c.o -MF CMakeFiles/sra-pileup.dir/pileup_index.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_index.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/pileup_index.c make -f tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/build.make tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/depend -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/cache-mgr.dir/cache-mgr.c.o" -o ../../../bin/cache-mgr /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu 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-Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o -MF CMakeFiles/ngs.dir/NGS_Id.c.o.d -o CMakeFiles/ngs.dir/NGS_Id.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_Id.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 37%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_indels.c.o -cd 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tools/loaders/kar/CMakeFiles/kar+.dir/kar+args.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+args.c.o -MF CMakeFiles/kar+.dir/kar+args.c.o.d -o CMakeFiles/kar+.dir/kar+args.c.o -c 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tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/caps.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/caps.c.o -MF CMakeFiles/sra-sort.dir/caps.c.o.d -o 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[-Wmisleading-indentation] -102377 | if( pIdx->pPartIdxWhere!=0 ) a[0] -= 10; assert( 10==sqlite3LogEst(2) ); - | ^~ -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 38%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/sam.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/sam.c.o -MF CMakeFiles/samview.dir/sam.c.o.d -o CMakeFiles/samview.dir/sam.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/sam.c -In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:11540: -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:102377:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' -102377 | if( pIdx->pPartIdxWhere!=0 ) a[0] -= 10; assert( 10==sqlite3LogEst(2) ); - | ^~~~~~ -[ 38%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/caps.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=ngs-java.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.30/Modules/UseJava/Symlinks.cmake -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/caps.c.o -MF CMakeFiles/sra-sort-cg.dir/caps.c.o.d -o CMakeFiles/sra-sort-cg.dir/caps.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/caps.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f cache-mgr.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv cache-mgr cache-mgr.3.0.9 -[ 38%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mem.c.o -make -f tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/build.make tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/depend -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mem.c.o -MF CMakeFiles/sra-sort-cg.dir/mem.c.o.d -o CMakeFiles/sra-sort-cg.dir/mem.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/mem.c -[ 38%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s cache-mgr.3.0.9 cache-mgr.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o -MF CMakeFiles/ngs.dir/NGS_ErrBlock.c.o.d -o CMakeFiles/ngs.dir/NGS_ErrBlock.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_ErrBlock.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s cache-mgr.3 cache-mgr -[ 38%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_stat.c.o +[ 33%] Linking C static library ../../../../ilib/libtui.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -P CMakeFiles/tui.dir/cmake_clean_target.cmake +[ 33%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-view-spec.c +[ 33%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_stat.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_stat.c.o -MF CMakeFiles/sra-pileup.dir/pileup_stat.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_stat.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/pileup_stat.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -E cmake_link_script CMakeFiles/tui.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../../ilib/libtui.a CMakeFiles/tui.dir/dir_dlg.c.o CMakeFiles/tui.dir/eventring.c.o CMakeFiles/tui.dir/file_dlg.c.o CMakeFiles/tui.dir/line_policy.c.o CMakeFiles/tui.dir/screen.c.o CMakeFiles/tui.dir/string_cache.c.o CMakeFiles/tui.dir/tui.c.o CMakeFiles/tui.dir/tui_dlg.c.o CMakeFiles/tui.dir/tui_dlg_helper.c.o CMakeFiles/tui.dir/tui_menu.c.o CMakeFiles/tui.dir/tui_palette.c.o CMakeFiles/tui.dir/tui_std_dlg.c.o CMakeFiles/tui.dir/tui_widget.c.o CMakeFiles/tui.dir/tui_widget_button.c.o CMakeFiles/tui.dir/tui_widget_checkbox.c.o CMakeFiles/tui.dir/tui_widget_grid.c.o CMakeFiles/tui.dir/tui_widget_inputline.c.o CMakeFiles/tui.dir/tui_widget_label.c.o CMakeFiles/tui.dir/tui_widget_progress.c.o CMakeFiles/tui.dir/tui_widget_radiobox.c.o CMakeFiles/tui.dir/tui_widget_spin_edit.c.o CMakeFiles/tui.dir/tui_widget_string_list.c.o CMakeFiles/tui.dir/tui_widget_tabhdr.c.o CMakeFiles/tui.dir/linux/systui.c.o +/usr/bin/ranlib ../../../../ilib/libtui.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 38%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mem.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mem.c.o -MF CMakeFiles/sra-sort.dir/mem.c.o.d -o CMakeFiles/sra-sort.dir/mem.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/mem.c -[ 38%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/membank.c.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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[-Wmisleading-indentation] -102378 | if( a[0]<33 ) a[0] = 33; assert( 33==sqlite3LogEst(10) ); - | ^~ -[ 38%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-membank.c.o +[ 33%] Built target tui +make -f tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/build.make tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/idx-mapping.c.o -MF CMakeFiles/sra-sort.dir/idx-mapping.c.o.d -o CMakeFiles/sra-sort.dir/idx-mapping.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/idx-mapping.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-bind-python.dir/link.txt --verbose=1 -[ 40%] Linking C executable ../../../bin/dump-blob-boundaries +[ 34%] Linking C executable ../../../bin/dump-blob-boundaries cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/dump-blob-boundaries.dir/link.txt --verbose=1 -make -f tools/loaders/sra-load/CMakeFiles/sff-load.dir/build.make tools/loaders/sra-load/CMakeFiles/sff-load.dir/depend -/usr/bin/ar qc ../../../../ilib/libngs-bind-python.a "CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/sff-load.dir/DependInfo.cmake "--color=" -[ 40%] Linking CXX static library ../../../../ilib/libngs-bind-java.a -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/cmake -P CMakeFiles/ngs-bind-java.dir/cmake_clean_target.cmake +[ 34%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+print.c.o +[ 35%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/caps.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+print.c.o -MF CMakeFiles/kar+.dir/kar+print.c.o.d -o CMakeFiles/kar+.dir/kar+print.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/kar/kar+print.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/caps.c.o -MF CMakeFiles/sra-sort.dir/caps.c.o.d -o CMakeFiles/sra-sort.dir/caps.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/caps.c /usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -Wl,-z,relro -Wl,-z,now "CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o" -o ../../../bin/dump-blob-boundaries /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 41%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/sequence-writer.c.o -[ 41%] Linking C executable ../../../bin/srapath -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/sequence-writer.c.o -MF 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/srapath.dir/helper.c.o CMakeFiles/srapath.dir/line_iter.c.o "CMakeFiles/srapath.dir/repository-mgr.c.o" CMakeFiles/srapath.dir/services.c.o CMakeFiles/srapath.dir/cgi_request.c.o CMakeFiles/srapath.dir/srapath.c.o -o ../../../bin/srapath /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 42%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/pstring.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/pstring.c.o -MF CMakeFiles/sff-load.dir/pstring.c.o.d -o CMakeFiles/sff-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/pstring.c -make -f tools/loaders/sra-load/CMakeFiles/fastq-load.dir/build.make tools/loaders/sra-load/CMakeFiles/fastq-load.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd 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-I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-reader.c.o -MF CMakeFiles/latf-load.dir/common-reader.c.o.d -o CMakeFiles/latf-load.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/common-reader.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-reader.c.o -MF CMakeFiles/latf-load.dir/fastq-reader.c.o.d -o CMakeFiles/latf-load.dir/fastq-reader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/fastq-reader.c -[ 42%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_file_list.c.o -/usr/bin/ar qc ../../../../ilib/libngs-bind-java.a "CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs/NGS_ReferenceBlob.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 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+cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-unaligned.c.o -MF CMakeFiles/sam-dump.dir/sam-unaligned.c.o.d -o CMakeFiles/sam-dump.dir/sam-unaligned.c.o -c 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-DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o -MF CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o.d -o CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/zz_fastq-grammar.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s dump-blob-boundaries.3 dump-blob-boundaries -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv srapath srapath.3.0.9 -[ 44%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time 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'/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 44%] Built target ngs-bind-java -[ 44%] Built target dump-blob-boundaries -[ 44%] Built target srapath -[ 45%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/sra-pileup.c.o -[ 45%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/map-file.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/map-file.c.o -MF CMakeFiles/sra-sort.dir/map-file.c.o.d -o CMakeFiles/sra-sort.dir/map-file.c.o -c 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-Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/caps.c.o -MF CMakeFiles/sra-sort-cg.dir/caps.c.o.d -o CMakeFiles/sra-sort-cg.dir/caps.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/caps.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/membank.c.o -MF CMakeFiles/sra-sort.dir/membank.c.o.d -o CMakeFiles/sra-sort.dir/membank.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/membank.c +[ 36%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/sra-pileup.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/sra-pileup.c.o -MF CMakeFiles/sra-pileup.dir/sra-pileup.c.o.d -o CMakeFiles/sra-pileup.dir/sra-pileup.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sra-pileup.c -[ 45%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-lex.c.o -[ 45%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/common-xml.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-misleading-indentation -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-lex.c.o -MF CMakeFiles/latf-load.dir/zz_fastq-lex.c.o.d -o CMakeFiles/latf-load.dir/zz_fastq-lex.c.o -c 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-Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/col-pair.c.o -MF CMakeFiles/sra-sort.dir/col-pair.c.o.d -o CMakeFiles/sra-sort.dir/col-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/col-pair.c -[ 46%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/row-set.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/row-set.c.o -MF CMakeFiles/sra-sort.dir/row-set.c.o.d -o CMakeFiles/sra-sort.dir/row-set.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/row-set.c -[ 46%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_value.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_value.c.o -MF CMakeFiles/fasterq-dump.dir/locked_value.c.o.d -o CMakeFiles/fasterq-dump.dir/locked_value.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/locked_value.c -[ 46%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/experiment-xml.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/experiment-xml.c.o -MF CMakeFiles/sff-load.dir/experiment-xml.c.o.d -o CMakeFiles/sff-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/experiment-xml.c +[ 37%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+util.c.o +cd 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sra-pileup.c: In function 'KMain': /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sra-pileup.c:1416:22: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 1416 | ReportBuildDate( __DATE__ ); | ^~~~~~~~ -[ 46%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/simple-row-set.c.o -[ 46%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sam.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/simple-row-set.c.o -MF CMakeFiles/sra-sort.dir/simple-row-set.c.o.d -o CMakeFiles/sra-sort.dir/simple-row-set.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/simple-row-set.c -[ 46%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/alignment-writer.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/merge_sorter.c.o -MF CMakeFiles/fasterq-dump.dir/merge_sorter.c.o.d -o CMakeFiles/fasterq-dump.dir/merge_sorter.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/merge_sorter.c -[ 47%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/map-file.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux 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-D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/reference-writer.c.o -MF CMakeFiles/bam-load.dir/reference-writer.c.o.d -o CMakeFiles/bam-load.dir/reference-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/reference-writer.c -[ 47%] Linking C static library ../../../ilib/libngs.a -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cmake -P CMakeFiles/ngs.dir/cmake_clean_target.cmake -[ 48%] Linking C executable ../../../bin/vdb-dump -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-dump.dir/link.txt --verbose=1 -[ 48%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sequence-writer.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sequence-writer.c.o -MF CMakeFiles/bam-load.dir/sequence-writer.c.o.d -o CMakeFiles/bam-load.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/sequence-writer.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs.dir/link.txt --verbose=1 -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o" "CMakeFiles/vdb-dump.dir/vdb_info.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump.c.o" -o ../../../bin/vdb-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 48%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/run-xml.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/run-xml.c.o -MF CMakeFiles/sff-load.dir/run-xml.c.o.d -o 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-c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/col-pair.c -/usr/bin/ar qc ../../../ilib/libngs.a "CMakeFiles/ngs.dir/NCBI-NGS.c.o" CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o CMakeFiles/ngs.dir/CSRA1_Pileup.c.o CMakeFiles/ngs.dir/CSRA1_Alignment.c.o CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o CMakeFiles/ngs.dir/CSRA1_Reference.c.o CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o CMakeFiles/ngs.dir/CSRA1_Read.c.o CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o CMakeFiles/ngs.dir/SRA_Statistics.c.o CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o CMakeFiles/ngs.dir/SRA_Read.c.o CMakeFiles/ngs.dir/SRA_ReadGroup.c.o CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o CMakeFiles/ngs.dir/SRA_ReadCollection.c.o CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o CMakeFiles/ngs.dir/NGS_Statistics.c.o CMakeFiles/ngs.dir/NGS_ReadCollection.c.o CMakeFiles/ngs.dir/NGS_PileupEvent.c.o CMakeFiles/ngs.dir/NGS_Pileup.c.o CMakeFiles/ngs.dir/NGS_ReadGroup.c.o CMakeFiles/ngs.dir/NGS_Alignment.c.o 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tools/loaders/sra-load/CMakeFiles/srf-load.dir/pstring.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/pstring.c.o -MF CMakeFiles/srf-load.dir/pstring.c.o.d -o CMakeFiles/srf-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/pstring.c -[ 48%] Linking C executable ../../../bin/kar+ -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cmake -E cmake_link_script CMakeFiles/kar+.dir/link.txt --verbose=1 -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/kar+.dir/kar-path.c.o" CMakeFiles/kar+.dir/kar+args.c.o CMakeFiles/kar+.dir/kar+print.c.o CMakeFiles/kar+.dir/kar+util.c.o CMakeFiles/kar+.dir/kar+.c.o -o ../../../bin/kar+ /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-dump.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-dump vdb-dump.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-dump.3.0.9 vdb-dump.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-dump.3 vdb-dump -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.0.9 vdb-dump-driver -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 37%] Building C object tools/external/test-sra/CMakeFiles/test-sra.dir/unix/PrintOS.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/test-sra && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/test-sra\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump.c +[ 37%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/command-line.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/command-line.cpp.o -MF CMakeFiles/sratools.dir/command-line.cpp.o.d -o CMakeFiles/sratools.dir/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/command-line.cpp +[ 37%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o -MF CMakeFiles/fasterq-dump.dir/copy_machine.c.o.d -o CMakeFiles/fasterq-dump.dir/copy_machine.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/copy_machine.c +[ 37%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/formatter.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-info\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/formatter.cpp.o -MF CMakeFiles/sra-info.dir/formatter.cpp.o.d -o CMakeFiles/sra-info.dir/formatter.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-info/formatter.cpp +[ 37%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o -MF CMakeFiles/fasterq-dump.dir/multi_writer.c.o.d -o CMakeFiles/fasterq-dump.dir/multi_writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/multi_writer.c +[ 37%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-mmapbank.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-mmapbank.c.o -MF CMakeFiles/sra-sort.dir/paged-mmapbank.c.o.d -o CMakeFiles/sra-sort.dir/paged-mmapbank.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/paged-mmapbank.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f kar.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f kar+.3.0.9 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv kar kar.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv kar+ kar+.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar+.3.0.9 kar+.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar+.3 kar+ cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar.3.0.9 kar.3 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar.3 kar -[ 48%] Built target vdb-dump +[ 38%] Linking C executable ../../../bin/test-sra +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/test-sra && /usr/bin/cmake -E cmake_link_script 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/mem-bank.cpp.o -MF CMakeFiles/bam-load.dir/mem-bank.cpp.o.d -o CMakeFiles/bam-load.dir/mem-bank.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/mem-bank.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/low-match-count.cpp.o -MF CMakeFiles/bam-load.dir/low-match-count.cpp.o.d -o CMakeFiles/bam-load.dir/low-match-count.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/low-match-count.cpp -[ 49%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/experiment-xml.c.o +[ 38%] Built target kar +make -f tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/build.make tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/DependInfo.cmake "--color=" +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-sra.dir/test-sra.c.o" "CMakeFiles/test-sra.dir/unix/PrintOS.c.o" -o ../../../bin/test-sra ../../../ilib/libascp.a ../../../ilib/libdiagnose.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/build.make tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 38%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+.c.o -MF CMakeFiles/kar+.dir/kar+.c.o.d -o CMakeFiles/kar+.dir/kar+.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/kar/kar+.c +[ 38%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/spot-assembler.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/spot-assembler.c.o -MF CMakeFiles/fastqloader.dir/spot-assembler.c.o.d -o CMakeFiles/fastqloader.dir/spot-assembler.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/spot-assembler.c +[ 38%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-membank.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-membank.c.o -MF CMakeFiles/sra-sort-cg.dir/paged-membank.c.o.d -o CMakeFiles/sra-sort-cg.dir/paged-membank.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/paged-membank.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f test-sra.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv test-sra test-sra.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-sra.3.0.9 test-sra.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-sra.3 test-sra +[ 38%] Linking C executable ../../../bin/kar+meta make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/experiment-xml.c.o -MF CMakeFiles/srf-load.dir/experiment-xml.c.o.d -o CMakeFiles/srf-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/experiment-xml.c -[ 49%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/row-set.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/row-set.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/row-set.c -[ 49%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-file.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-file.c.o -MF CMakeFiles/sff-load.dir/loader-file.c.o.d -o CMakeFiles/sff-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-file.c -[ 49%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-loader.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-loader.c.o -MF CMakeFiles/latf-load.dir/fastq-loader.c.o.d -o CMakeFiles/latf-load.dir/fastq-loader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/fastq-loader.c -[ 49%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/run-xml.c.o -[ 49%] Linking C executable ../../../bin/kar+meta -[ 49%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/run-xml.c.o -MF CMakeFiles/srf-load.dir/run-xml.c.o.d -o CMakeFiles/srf-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/run-xml.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cmake -E cmake_link_script CMakeFiles/kar+meta.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/simple-row-set.c /usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/kar+meta.dir/kar+util.c.o CMakeFiles/kar+meta.dir/kar+meta.c.o -o ../../../bin/kar+meta /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -[ 49%] Built target ngs -[ 49%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/mapping-row-set.c -[ 49%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-fmt.c.o -MF CMakeFiles/sff-load.dir/loader-fmt.c.o.d -o CMakeFiles/sff-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-fmt.c -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/bam.c: In function 'BAM_FileMakeAlignment': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/bam.c:1777:14: warning: '' may be used uninitialized [-Wmaybe-uninitialized] - 1777 | if (!BAM_AlignmentInit(y, rsltsize, datasize, &y->extra[numExtra])) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/bam.c:1697:13: note: by argument 4 of type 'const void * const' to 'BAM_AlignmentInit' declared here - 1697 | static bool BAM_AlignmentInit(BAM_Alignment *const self, unsigned const maxsize, - | ^~~~~~~~~~~~~~~~~ +[ 38%] Built target test-sra +make -f tools/loaders/sra-load/CMakeFiles/sff-load.dir/build.make tools/loaders/sra-load/CMakeFiles/sff-load.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/sff-load.dir/DependInfo.cmake "--color=" +[ 39%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o -MF CMakeFiles/fasterq-dump.dir/concatenator.c.o.d -o CMakeFiles/fasterq-dump.dir/concatenator.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/concatenator.c +[ 39%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -MF CMakeFiles/fasterq-dump.dir/ref_inventory.c.o.d -o CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/ref_inventory.c +make -f tools/loaders/sra-load/CMakeFiles/sff-load.dir/build.make tools/loaders/sra-load/CMakeFiles/sff-load.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 39%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/except.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/except.c.o -MF CMakeFiles/sra-sort.dir/except.c.o.d -o CMakeFiles/sra-sort.dir/except.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/except.c +[ 40%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/pstring.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/pstring.c.o -MF CMakeFiles/sff-load.dir/pstring.c.o.d -o CMakeFiles/sff-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/pstring.c +[ 40%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o -MF CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o.d -o CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/paged-mmapbank.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f kar+meta.3.0.9 -[ 49%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -MF CMakeFiles/fasterq-dump.dir/cmn_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/cmn_iter.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv kar+meta kar+meta.3.0.9 -[ 49%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/run-xml.c.o -[ 49%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mapping-row-set.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mapping-row-set.c.o -MF CMakeFiles/sra-sort.dir/mapping-row-set.c.o.d -o CMakeFiles/sra-sort.dir/mapping-row-set.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/mapping-row-set.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/run-xml.c.o -MF CMakeFiles/fastq-load.dir/run-xml.c.o.d -o CMakeFiles/fastq-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/run-xml.c -[ 49%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/experiment-xml.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar+meta.3.0.9 kar+meta.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/experiment-xml.c.o -MF CMakeFiles/fastq-load.dir/experiment-xml.c.o.d -o CMakeFiles/fastq-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/experiment-xml.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar+meta.3 kar+meta -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 49%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-file.c.o -[ 49%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-fmt.c.o -MF CMakeFiles/fastq-load.dir/loader-fmt.c.o.d -o CMakeFiles/fastq-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-fmt.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-file.c.o -MF CMakeFiles/fastq-load.dir/loader-file.c.o.d -o CMakeFiles/fastq-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-file.c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/bam.c: In function 'BAM_FileMakeAlignment': +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/bam.c:1777:14: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1777 | if (!BAM_AlignmentInit(y, rsltsize, datasize, &y->extra[numExtra])) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/bam.c:1697:13: note: by argument 4 of type 'const void * const' to 'BAM_AlignmentInit' declared here 1697 | static bool BAM_AlignmentInit(BAM_Alignment *const self, unsigned const maxsize, | ^~~~~~~~~~~~~~~~~ -[ 49%] Built target kar+meta -[ 49%] Linking C executable ../../../bin/sra-pileup -[ 49%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/sra-writer.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/sra-writer.c.o -MF CMakeFiles/sff-load.dir/sra-writer.c.o.d -o CMakeFiles/sff-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/sra-writer.c +[ 40%] Built target kar+meta +make -f tools/loaders/sra-load/CMakeFiles/fastq-load.dir/build.make tools/loaders/sra-load/CMakeFiles/fastq-load.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/fastq-load.dir/DependInfo.cmake "--color=" +[ 40%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -MF CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o.d -o CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/fasterq-dump.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/loaders/sra-load/CMakeFiles/fastq-load.dir/build.make tools/loaders/sra-load/CMakeFiles/fastq-load.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 41%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/pstring.c.o +[ 41%] Linking C executable ../../../bin/sra-pileup cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-pileup.dir/link.txt --verbose=1 -[ 49%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/loader-imp.c.o -[ 49%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sorting-row-set.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/pstring.c.o -MF CMakeFiles/fastq-load.dir/pstring.c.o.d -o CMakeFiles/fastq-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/pstring.c +[ 41%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/idx-mapping.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/idx-mapping.c.o -MF CMakeFiles/sra-sort.dir/idx-mapping.c.o.d -o CMakeFiles/sra-sort.dir/idx-mapping.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/idx-mapping.c /usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/sra-pileup.dir/dyn_string.c.o" "CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o" "CMakeFiles/sra-pileup.dir/out_redir.c.o" "CMakeFiles/sra-pileup.dir/perf_log.c.o" "CMakeFiles/sra-pileup.dir/reref.c.o" "CMakeFiles/sra-pileup.dir/cg_tools.c.o" "CMakeFiles/sra-pileup.dir/report_deletes.c.o" "CMakeFiles/sra-pileup.dir/ref_regions.c.o" "CMakeFiles/sra-pileup.dir/4na_ascii.c.o" "CMakeFiles/sra-pileup.dir/ref_walker_0.c.o" "CMakeFiles/sra-pileup.dir/ref_walker.c.o" "CMakeFiles/sra-pileup.dir/walk_debug.c.o" "CMakeFiles/sra-pileup.dir/pileup_counters.c.o" "CMakeFiles/sra-pileup.dir/pileup_index.c.o" "CMakeFiles/sra-pileup.dir/pileup_indels.c.o" "CMakeFiles/sra-pileup.dir/pileup_varcount.c.o" "CMakeFiles/sra-pileup.dir/pileup_stat.c.o" "CMakeFiles/sra-pileup.dir/pileup_v2.c.o" "CMakeFiles/sra-pileup.dir/sra-pileup.c.o" -o ../../../bin/sra-pileup /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/loader-imp.c.o -MF CMakeFiles/latf-load.dir/loader-imp.c.o.d -o CMakeFiles/latf-load.dir/loader-imp.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/loader-imp.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sorting-row-set.c.o -MF CMakeFiles/sra-sort.dir/sorting-row-set.c.o.d -o CMakeFiles/sra-sort.dir/sorting-row-set.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/sorting-row-set.c -[ 49%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o -MF CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/raw_read_iter.c -[ 49%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/sra-writer.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX 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tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/special_iter.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/special_iter.c.o -MF CMakeFiles/fasterq-dump.dir/special_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/special_iter.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/special_iter.c -[ 50%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o -MF CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/fq_seq_csra_iter.c -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/loader-imp.c: In function 'WriteLoaderSignature': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/loader-imp.c:180:48: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 180 | rc = KLoaderMeta_Write(node, progName, __DATE__, "FASTQ", KAppVersion()); - | ^~~~~~~~ -[ 50%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/align_iter.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/align_iter.c.o -MF CMakeFiles/fasterq-dump.dir/align_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/align_iter.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/align_iter.c -[ 50%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o -MF CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/simple_fasta_iter.c -[ 50%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader.c.o -MF CMakeFiles/fastq-load.dir/loader.c.o.d -o CMakeFiles/fastq-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c +[ 41%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/except.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/except.c.o -MF CMakeFiles/sra-sort-cg.dir/except.c.o.d -o CMakeFiles/sra-sort-cg.dir/except.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/except.c +[ 41%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o -MF CMakeFiles/sam-dump.dir/md_flag.c.o.d -o CMakeFiles/sam-dump.dir/md_flag.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/md_flag.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-pileup.3.0.9 -[ 50%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o -MF CMakeFiles/fasterq-dump.dir/db_join.c.o.d -o CMakeFiles/fasterq-dump.dir/db_join.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/db_join.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sra-pileup sra-pileup.3.0.9 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-pileup.3.0.9 sra-pileup.3 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-pileup.3 sra-pileup +[ 41%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/common-xml.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.0.9 sra-pileup-driver -[ 51%] Linking C executable ../../../bin/test-sra +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/common-xml.c.o -MF CMakeFiles/sff-load.dir/common-xml.c.o.d -o CMakeFiles/sff-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/common-xml.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/test-sra && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-sra.dir/link.txt --verbose=1 -[ 51%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-file.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-file.c.o -MF CMakeFiles/srf-load.dir/loader-file.c.o.d -o 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o -MF CMakeFiles/fasterq-dump.dir/tbl_join.c.o.d -o CMakeFiles/fasterq-dump.dir/tbl_join.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/tbl_join.c -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-sra.dir/test-sra.c.o" "CMakeFiles/test-sra.dir/unix/PrintOS.c.o" -o ../../../bin/test-sra ../../../ilib/libascp.a ../../../ilib/libdiagnose.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 51%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-fmt.c.o -[ 51%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-illumina.c.o -[ 51%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader.c.o -MF CMakeFiles/sff-load.dir/loader.c.o.d -o CMakeFiles/sff-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c -[ 51%] Built target sra-pileup +[ 41%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/sam.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/sam.c.o -MF CMakeFiles/samview.dir/sam.c.o.d -o CMakeFiles/samview.dir/sam.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/sam.c +[ 41%] Built target sra-pileup +make -f tools/loaders/sra-load/CMakeFiles/srf-load.dir/build.make tools/loaders/sra-load/CMakeFiles/srf-load.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/srf-load.dir/DependInfo.cmake "--color=" +[ 41%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-writer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-writer.c.o -MF CMakeFiles/fastqloader.dir/common-writer.c.o.d -o CMakeFiles/fastqloader.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/common-writer.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/loaders/sra-load/CMakeFiles/srf-load.dir/build.make tools/loaders/sra-load/CMakeFiles/srf-load.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 41%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/pstring.c.o +[ 41%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o -MF CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o.d -o CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/idx-mapping.c +[ 41%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o -MF CMakeFiles/sam-dump.dir/cg_tools.c.o.d -o CMakeFiles/sam-dump.dir/cg_tools.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/cg_tools.c +[ 41%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/map-file.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/map-file.c.o -MF CMakeFiles/sra-sort.dir/map-file.c.o.d -o CMakeFiles/sra-sort.dir/map-file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/map-file.c +[ 41%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/col-pair.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/col-pair.c.o -MF CMakeFiles/sra-sort.dir/col-pair.c.o.d -o CMakeFiles/sra-sort.dir/col-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/col-pair.c +[ 41%] Linking C executable ../../../bin/fasterq-dump +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/fasterq-dump.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/fasterq-dump.dir/helper.c.o" "CMakeFiles/fasterq-dump.dir/arg_helper.c.o" "CMakeFiles/fasterq-dump.dir/dflt_defline.c.o" "CMakeFiles/fasterq-dump.dir/tool_ctx.c.o" "CMakeFiles/fasterq-dump.dir/inspector.c.o" "CMakeFiles/fasterq-dump.dir/sbuffer.c.o" "CMakeFiles/fasterq-dump.dir/err_msg.c.o" "CMakeFiles/fasterq-dump.dir/file_tools.c.o" "CMakeFiles/fasterq-dump.dir/var_fmt.c.o" "CMakeFiles/fasterq-dump.dir/flex_printer.c.o" "CMakeFiles/fasterq-dump.dir/temp_dir.c.o" "CMakeFiles/fasterq-dump.dir/progress_thread.c.o" "CMakeFiles/fasterq-dump.dir/cleanup_task.c.o" "CMakeFiles/fasterq-dump.dir/index.c.o" "CMakeFiles/fasterq-dump.dir/lookup_writer.c.o" "CMakeFiles/fasterq-dump.dir/lookup_reader.c.o" "CMakeFiles/fasterq-dump.dir/locked_file_list.c.o" "CMakeFiles/fasterq-dump.dir/locked_value.c.o" "CMakeFiles/fasterq-dump.dir/file_printer.c.o" "CMakeFiles/fasterq-dump.dir/merge_sorter.c.o" "CMakeFiles/fasterq-dump.dir/sorter.c.o" "CMakeFiles/fasterq-dump.dir/cmn_iter.c.o" "CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o" "CMakeFiles/fasterq-dump.dir/special_iter.c.o" "CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o" "CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o" "CMakeFiles/fasterq-dump.dir/align_iter.c.o" "CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o" "CMakeFiles/fasterq-dump.dir/db_join.c.o" "CMakeFiles/fasterq-dump.dir/tbl_join.c.o" "CMakeFiles/fasterq-dump.dir/temp_registry.c.o" "CMakeFiles/fasterq-dump.dir/copy_machine.c.o" "CMakeFiles/fasterq-dump.dir/multi_writer.c.o" "CMakeFiles/fasterq-dump.dir/concatenator.c.o" "CMakeFiles/fasterq-dump.dir/ref_inventory.c.o" "CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o" -o ../../../bin/fasterq-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 42%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/map-file.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/map-file.c.o -MF CMakeFiles/sra-sort-cg.dir/map-file.c.o.d -o CMakeFiles/sra-sort-cg.dir/map-file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/map-file.c +[ 42%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/common-xml.c.o -MF CMakeFiles/srf-load.dir/common-xml.c.o.d -o CMakeFiles/srf-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/common-xml.c +[ 42%] Linking C executable ../../../bin/sra-stat +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-stat.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/sra-stat.dir/assembly-statistics.c.o" "CMakeFiles/sra-stat.dir/sra.c.o" "CMakeFiles/sra-stat.dir/sra-stat.c.o" -o ../../../bin/sra-stat ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f fasterq-dump.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv fasterq-dump fasterq-dump.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fasterq-dump.3.0.9 fasterq-dump.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fasterq-dump.3 fasterq-dump +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.0.9 fasterq-dump-driver +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 42%] Built target fasterq-dump make -f tools/loaders/sra-load/CMakeFiles/abi-load.dir/build.make tools/loaders/sra-load/CMakeFiles/abi-load.dir/depend -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-fmt.c.o -MF CMakeFiles/srf-load.dir/loader-fmt.c.o.d -o CMakeFiles/srf-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-fmt.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/abi-load.dir/DependInfo.cmake "--color=" -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ +[ 42%] Linking C executable ../../../bin/kar+ +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cmake -E cmake_link_script CMakeFiles/kar+.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/sra-load/CMakeFiles/abi-load.dir/build.make tools/loaders/sra-load/CMakeFiles/abi-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 52%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-454.c.o -[ 52%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/meta-pair.c.o -[ 53%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-454.c.o -[ 54%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/sra-writer.c.o -[ 54%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-ion-torrent.c.o -[ 52%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-454.c.o -MF CMakeFiles/fastq-load.dir/writer-454.c.o.d -o CMakeFiles/fastq-load.dir/writer-454.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/writer-454.c -[ 52%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/meta-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/meta-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/meta-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/meta-pair.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f test-sra.3.0.9 -[ 54%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/dir-pair.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX 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mv test-sra test-sra.3.0.9 -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ -[ 54%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -[ 55%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/pstring.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-sra.3.0.9 test-sra.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/tbl-pair.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-sra.3 test-sra +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/kar+.dir/kar-path.c.o" CMakeFiles/kar+.dir/kar+args.c.o CMakeFiles/kar+.dir/kar+print.c.o CMakeFiles/kar+.dir/kar+util.c.o CMakeFiles/kar+.dir/kar+.c.o -o ../../../bin/kar+ /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 43%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/pstring.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/pstring.c.o -MF CMakeFiles/abi-load.dir/pstring.c.o.d -o CMakeFiles/abi-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/pstring.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-stat.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sra-stat sra-stat.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-stat.3.0.9 sra-stat.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-stat.3 sra-stat make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 55%] Linking C executable ../../../bin/latf-load -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/latf-load.dir/link.txt --verbose=1 -[ 55%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/common-xml.c.o -[ 55%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/latf-load.dir/spot-assembler.c.o" "CMakeFiles/latf-load.dir/common-writer.c.o" "CMakeFiles/latf-load.dir/sequence-writer.c.o" "CMakeFiles/latf-load.dir/common-reader.c.o" "CMakeFiles/latf-load.dir/fastq-reader.c.o" "CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o" "CMakeFiles/latf-load.dir/zz_fastq-lex.c.o" "CMakeFiles/latf-load.dir/id2name.c.o" "CMakeFiles/latf-load.dir/fastq-loader.c.o" "CMakeFiles/latf-load.dir/loader-imp.c.o" -o ../../../bin/latf-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/common-xml.c.o -MF CMakeFiles/abi-load.dir/common-xml.c.o.d -o CMakeFiles/abi-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/common-xml.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o -MF CMakeFiles/fasterq-dump.dir/multi_writer.c.o.d -o CMakeFiles/fasterq-dump.dir/multi_writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/multi_writer.c -[ 56%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o -[ 55%] Built target test-sra -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o -MF CMakeFiles/fasterq-dump.dir/concatenator.c.o.d -o CMakeFiles/fasterq-dump.dir/concatenator.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/concatenator.c -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ -[ 57%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/db-pair.c.o -[ 57%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/db-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/db-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/db-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/db-pair.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -MF CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o.d -o CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/glob-poslen.c -[ 57%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE 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tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/dir-pair.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/dir-pair.c.o -MF CMakeFiles/sra-sort.dir/dir-pair.c.o.d -o CMakeFiles/sra-sort.dir/dir-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/dir-pair.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f latf-load.3.0.9 -[ 57%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv latf-load latf-load.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf.c.o -MF CMakeFiles/srf-load.dir/srf.c.o.d -o CMakeFiles/srf-load.dir/srf.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/srf.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s latf-load.3.0.9 latf-load.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s latf-load.3 latf-load -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 57%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/sff-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/sff-fmt.c.o -MF CMakeFiles/sff-load.dir/sff-fmt.c.o.d -o CMakeFiles/sff-load.dir/sff-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/sff-fmt.c -[ 57%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o -[ 57%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/experiment-xml.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o -MF CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o.d -o 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-MF CMakeFiles/abi-load.dir/experiment-xml.c.o.d -o CMakeFiles/abi-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/experiment-xml.c -[ 57%] Built target latf-load +[ 44%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/row-set.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/row-set.c.o -MF CMakeFiles/sra-sort.dir/row-set.c.o.d -o CMakeFiles/sra-sort.dir/row-set.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/row-set.c +[ 44%] Built target sra-stat make -f tools/loaders/sra-load/CMakeFiles/illumina-load.dir/build.make tools/loaders/sra-load/CMakeFiles/illumina-load.dir/depend -[ 57%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o -MF CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o.d -o CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/ref-alignid-col.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/illumina-load.dir/DependInfo.cmake "--color=" -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/loader-imp.c:3453:44: warning: "/*" within comment [-Wcomment] - 3453 | int const logLevel = klogWarn; /*G.assembleWithSecondary ? klogWarn : klogErr; -[ 57%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/run-xml.c.o -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/loader-imp.c:4163:48: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 4163 | rc = KLoaderMeta_Write(node, progName, __DATE__, "BAM", KAppVersion()); - | ^~~~~~~~ -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/run-xml.c.o -MF CMakeFiles/abi-load.dir/run-xml.c.o.d -o CMakeFiles/abi-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/run-xml.c -[ 57%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/glob-poslen.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/glob-poslen.c.o -MF CMakeFiles/sra-sort.dir/glob-poslen.c.o.d -o CMakeFiles/sra-sort.dir/glob-poslen.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/glob-poslen.c -[ 57%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/tbl-pair.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/tbl-pair.c.o -MF CMakeFiles/sra-sort.dir/tbl-pair.c.o.d -o CMakeFiles/sra-sort.dir/tbl-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/tbl-pair.c -[ 57%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/db-pair.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/db-pair.c.o -MF CMakeFiles/sra-sort.dir/db-pair.c.o.d -o CMakeFiles/sra-sort.dir/db-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/db-pair.c -[ 57%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-file.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-file.c.o -MF CMakeFiles/abi-load.dir/loader-file.c.o.d -o CMakeFiles/abi-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-file.c -[ 57%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-fmt.c.o +[ 44%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/simple-row-set.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/simple-row-set.c.o -MF CMakeFiles/sra-sort.dir/simple-row-set.c.o.d -o CMakeFiles/sra-sort.dir/simple-row-set.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/simple-row-set.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-fmt.c.o -MF CMakeFiles/abi-load.dir/loader-fmt.c.o.d -o CMakeFiles/abi-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-fmt.c make -f tools/loaders/sra-load/CMakeFiles/illumina-load.dir/build.make tools/loaders/sra-load/CMakeFiles/illumina-load.dir/build +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f kar+.3.0.9 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 58%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/pstring.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv kar+ kar+.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar+.3.0.9 kar+.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar+.3 kar+ +[ 45%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/pstring.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/pstring.c.o -MF CMakeFiles/illumina-load.dir/pstring.c.o.d -o CMakeFiles/illumina-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/pstring.c -[ 58%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/sra-writer.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/sra-writer.c.o -MF CMakeFiles/abi-load.dir/sra-writer.c.o.d -o CMakeFiles/abi-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/sra-writer.c -[ 59%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/buff-writer.c.o -[ 59%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/buff-writer.c.o -MF CMakeFiles/sra-sort.dir/buff-writer.c.o.d -o CMakeFiles/sra-sort.dir/buff-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/buff-writer.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -MF CMakeFiles/sra-sort.dir/poslen-col-pair.c.o.d -o CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/poslen-col-pair.c -[ 59%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -MF CMakeFiles/sra-sort.dir/ref-alignid-col.c.o.d -o CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/ref-alignid-col.c -[ 59%] Linking C executable ../../../bin/sra-stat -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-stat.dir/link.txt --verbose=1 -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/sra-stat.dir/assembly-statistics.c.o" "CMakeFiles/sra-stat.dir/sra.c.o" "CMakeFiles/sra-stat.dir/sra-stat.c.o" -o ../../../bin/sra-stat ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 59%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-fmt.c.o -[ 59%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/id-mapper-col.c.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 46%] Linking C executable ../../../bin/vdb-dump +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-dump.dir/link.txt --verbose=1 +[ 46%] Built target kar+ +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o" "CMakeFiles/vdb-dump.dir/vdb_info.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump.c.o" -o ../../../bin/vdb-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 46%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mapping-row-set.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mapping-row-set.c.o -MF CMakeFiles/sra-sort.dir/mapping-row-set.c.o.d -o CMakeFiles/sra-sort.dir/mapping-row-set.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/mapping-row-set.c +[ 46%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sorting-row-set.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sorting-row-set.c.o -MF CMakeFiles/sra-sort.dir/sorting-row-set.c.o.d -o CMakeFiles/sra-sort.dir/sorting-row-set.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/sorting-row-set.c +[ 46%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/experiment-xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/experiment-xml.c.o -MF CMakeFiles/sff-load.dir/experiment-xml.c.o.d -o CMakeFiles/sff-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/experiment-xml.c +[ 47%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/meta-pair.c +[ 47%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/common-xml.c.o -MF CMakeFiles/illumina-load.dir/common-xml.c.o.d -o CMakeFiles/illumina-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/common-xml.c +[ 47%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/common-xml.c.o -MF CMakeFiles/abi-load.dir/common-xml.c.o.d -o CMakeFiles/abi-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/common-xml.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-dump.3.0.9 +[ 47%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/sequence-writer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/sequence-writer.c.o -MF CMakeFiles/fastqloader.dir/sequence-writer.c.o.d -o CMakeFiles/fastqloader.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/sequence-writer.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-dump vdb-dump.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-dump.3.0.9 vdb-dump.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-dump.3 vdb-dump +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.0.9 vdb-dump-driver +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 47%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/experiment-xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/experiment-xml.c.o -MF CMakeFiles/illumina-load.dir/experiment-xml.c.o.d -o CMakeFiles/illumina-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/experiment-xml.c +[ 47%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/col-pair.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/col-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/col-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/col-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/col-pair.c +[ 47%] Built target vdb-dump make -f tools/loaders/sra-load/CMakeFiles/helicos-load.dir/build.make tools/loaders/sra-load/CMakeFiles/helicos-load.dir/depend -[ 59%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/common-xml.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/helicos-load.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/common-xml.c.o -MF CMakeFiles/illumina-load.dir/common-xml.c.o.d -o CMakeFiles/illumina-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/common-xml.c -[ 59%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/buff-writer.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-fmt.c.o -MF CMakeFiles/srf-load.dir/srf-fmt.c.o.d -o CMakeFiles/srf-load.dir/srf-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/srf-fmt.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/id-mapper-col.c.o -MF CMakeFiles/sra-sort.dir/id-mapper-col.c.o.d -o CMakeFiles/sra-sort.dir/id-mapper-col.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/id-mapper-col.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/buff-writer.c.o -MF CMakeFiles/sra-sort-cg.dir/buff-writer.c.o.d -o CMakeFiles/sra-sort-cg.dir/buff-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/buff-writer.c -[ 59%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -MF CMakeFiles/fasterq-dump.dir/ref_inventory.c.o.d -o CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/ref_inventory.c -[ 59%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-illumina.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-illumina.c.o -MF CMakeFiles/srf-load.dir/writer-illumina.c.o.d -o CMakeFiles/srf-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/writer-illumina.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-stat.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sra-stat sra-stat.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-stat.3.0.9 sra-stat.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-stat.3 sra-stat -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 59%] Built target sra-stat -[ 59%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/fastq-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/fastq-fmt.c.o -MF CMakeFiles/fastq-load.dir/fastq-fmt.c.o.d -o CMakeFiles/fastq-load.dir/fastq-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/fastq-fmt.c +[ 47%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/experiment-xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/experiment-xml.c.o -MF CMakeFiles/fastq-load.dir/experiment-xml.c.o.d -o CMakeFiles/fastq-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/experiment-xml.c +[ 47%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/dir-pair.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/dir-pair.c.o -MF CMakeFiles/sra-sort.dir/dir-pair.c.o.d -o CMakeFiles/sra-sort.dir/dir-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/dir-pair.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/sra-load/CMakeFiles/helicos-load.dir/build.make tools/loaders/sra-load/CMakeFiles/helicos-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 47%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o -MF CMakeFiles/sam-dump.dir/sam-dump.c.o.d -o CMakeFiles/sam-dump.dir/sam-dump.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sam-dump.c +[ 47%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/pstring.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/pstring.c.o -MF CMakeFiles/helicos-load.dir/pstring.c.o.d -o CMakeFiles/helicos-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/pstring.c +[ 47%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/tbl-pair.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/tbl-pair.c.o -MF CMakeFiles/sra-sort.dir/tbl-pair.c.o.d -o CMakeFiles/sra-sort.dir/tbl-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/tbl-pair.c +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sam-dump.c: In function 'SAM_Dump_Main': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sam-dump.c:4387:22: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 4387 | ReportBuildDate( __DATE__ ); + | ^~~~~~~~ +[ 47%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/db-pair.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/db-pair.c.o -MF CMakeFiles/sra-sort.dir/db-pair.c.o.d -o CMakeFiles/sra-sort.dir/db-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/db-pair.c +[ 48%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-reader.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-reader.c.o -MF CMakeFiles/fastqloader.dir/common-reader.c.o.d -o CMakeFiles/fastqloader.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/common-reader.c +[ 48%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/samview.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/samview.c.o -MF CMakeFiles/samview.dir/samview.c.o.d -o CMakeFiles/samview.dir/samview.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/samview.c +[ 48%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/experiment-xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/experiment-xml.c.o -MF CMakeFiles/srf-load.dir/experiment-xml.c.o.d -o 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-Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/glob-poslen.c.o -MF CMakeFiles/sra-sort.dir/glob-poslen.c.o.d -o CMakeFiles/sra-sort.dir/glob-poslen.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/glob-poslen.c +[ 48%] Linking C executable ../../../bin/samview +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/samview.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/samview.dir/bam.c.o CMakeFiles/samview.dir/sam.c.o CMakeFiles/samview.dir/samview.c.o -o ../../../bin/samview /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lz +[ 48%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/row-set.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/row-set.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/row-set.c +[ 48%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/fastq-reader.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/fastq-reader.c.o -MF CMakeFiles/fastqloader.dir/fastq-reader.c.o.d -o CMakeFiles/fastqloader.dir/fastq-reader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/fastq-reader.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f samview.3.0.9 +[ 48%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv samview samview.3.0.9 +[ 49%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/poslen-col-pair.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o -MF CMakeFiles/sratools.dir/proc.cpp.o.d -o CMakeFiles/sratools.dir/proc.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/proc.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -MF CMakeFiles/sra-sort.dir/poslen-col-pair.c.o.d -o CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/poslen-col-pair.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s samview.3.0.9 samview.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s samview.3 samview +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 49%] Built target samview make -f tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/build.make tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/DependInfo.cmake "--color=" -[ 59%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-illumina.c.o -[ 59%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader.c.o -[ 59%] Linking C executable ../../../bin/sff-load -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-illumina.c.o -MF CMakeFiles/srf-load.dir/ztr-illumina.c.o.d -o CMakeFiles/srf-load.dir/ztr-illumina.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/ztr-illumina.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader.c.o -MF CMakeFiles/abi-load.dir/loader.c.o.d -o CMakeFiles/abi-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/sff-load.dir/link.txt --verbose=1 -[ 59%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/pstring.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/pstring.c.o -MF CMakeFiles/helicos-load.dir/pstring.c.o.d -o CMakeFiles/helicos-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/pstring.c -make -f tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/build.make tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/depend -[ 59%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o -[ 59%] Linking CXX executable ../../../bin/qa-stats -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/DependInfo.cmake "--color=" -[ 59%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/common-xml.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o -MF CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o.d -o CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/capture-first-half-aligned.c -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/sff-load.dir/pstring.c.o" "CMakeFiles/sff-load.dir/common-xml.c.o" "CMakeFiles/sff-load.dir/experiment-xml.c.o" "CMakeFiles/sff-load.dir/run-xml.c.o" "CMakeFiles/sff-load.dir/loader-file.c.o" "CMakeFiles/sff-load.dir/loader-fmt.c.o" "CMakeFiles/sff-load.dir/sra-writer.c.o" "CMakeFiles/sff-load.dir/loader.c.o" "CMakeFiles/sff-load.dir/writer-454.c.o" "CMakeFiles/sff-load.dir/writer-ion-torrent.c.o" "CMakeFiles/sff-load.dir/sff-fmt.c.o" -o ../../../bin/sff-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so -[ 59%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-illumina.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/common-xml.c.o -MF CMakeFiles/helicos-load.dir/common-xml.c.o.d -o CMakeFiles/helicos-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/common-xml.c +[ 49%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sam.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sam.c.o -MF CMakeFiles/bam-load.dir/sam.c.o.d -o CMakeFiles/bam-load.dir/sam.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/sam.c +In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/sratools.hpp:31, + from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/run-source.hpp:39, + from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/run-source.cpp:51: +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ^ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +[ 49%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/run-xml.c.o -MF CMakeFiles/illumina-load.dir/run-xml.c.o.d -o CMakeFiles/illumina-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/run-xml.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/build.make tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-illumina.c.o -MF CMakeFiles/srf-load.dir/srf-illumina.c.o.d -o CMakeFiles/srf-load.dir/srf-illumina.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/srf-illumina.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 60%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/experiment-xml.c.o +[ 49%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pstring.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pstring.c.o -MF CMakeFiles/pacbio-loadxml.dir/pstring.c.o.d -o CMakeFiles/pacbio-loadxml.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/pstring.c +[ 49%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/simple-row-set.c +[ 49%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/ref-alignid-col.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -MF CMakeFiles/sra-sort.dir/ref-alignid-col.c.o.d -o CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/ref-alignid-col.c +[ 49%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o -MF CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o.d -o CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/zz_fastq-grammar.c +[ 49%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/experiment-xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/experiment-xml.c.o -MF CMakeFiles/abi-load.dir/experiment-xml.c.o.d -o CMakeFiles/abi-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/experiment-xml.c +[ 49%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/buff-writer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/buff-writer.c.o -MF CMakeFiles/sra-sort.dir/buff-writer.c.o.d -o CMakeFiles/sra-sort.dir/buff-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/buff-writer.c +[ 49%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/run-xml.c.o -MF CMakeFiles/fastq-load.dir/run-xml.c.o.d -o CMakeFiles/fastq-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/run-xml.c +[ 49%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/mapping-row-set.c +[ 49%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/run-xml.c.o -MF CMakeFiles/sff-load.dir/run-xml.c.o.d -o CMakeFiles/sff-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/run-xml.c +[ 49%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/id-mapper-col.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/id-mapper-col.c.o -MF CMakeFiles/sra-sort.dir/id-mapper-col.c.o.d -o CMakeFiles/sra-sort.dir/id-mapper-col.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/id-mapper-col.c +[ 49%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-file.c.o -MF CMakeFiles/illumina-load.dir/loader-file.c.o.d -o 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-Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/experiment-xml.c.o -MF CMakeFiles/helicos-load.dir/experiment-xml.c.o.d -o CMakeFiles/helicos-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/experiment-xml.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qa-stats.dir/link.txt --verbose=1 -[ 60%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/run-xml.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/run-xml.c.o -MF CMakeFiles/helicos-load.dir/run-xml.c.o.d -o CMakeFiles/helicos-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/run-xml.c -[ 60%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/run.c.o +[ 50%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o -MF CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o.d -o CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/capture-first-half-aligned.c +[ 50%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-fmt.c.o -MF CMakeFiles/illumina-load.dir/loader-fmt.c.o.d -o CMakeFiles/illumina-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-fmt.c +[ 50%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/sorting-row-set.c +[ 50%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/run.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/run.c.o -MF CMakeFiles/sra-sort.dir/run.c.o.d -o CMakeFiles/sra-sort.dir/run.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/run.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/build.make tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 60%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-absolid.c.o -[ 60%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pstring.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-absolid.c.o -MF CMakeFiles/srf-load.dir/writer-absolid.c.o.d -o CMakeFiles/srf-load.dir/writer-absolid.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/writer-absolid.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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-DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sra-sort.c.o -MF CMakeFiles/sra-sort.dir/sra-sort.c.o.d -o CMakeFiles/sra-sort.dir/sra-sort.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/sra-sort.c -[ 60%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o -MF CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o.d -o CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/hdf5/hdf5arrayfile.c -[ 60%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o +[ 50%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/run-xml.c.o -MF CMakeFiles/srf-load.dir/run-xml.c.o.d -o CMakeFiles/srf-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/run-xml.c +[ 50%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/sra-writer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/sra-writer.c.o -MF CMakeFiles/illumina-load.dir/sra-writer.c.o.d -o CMakeFiles/illumina-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/sra-writer.c +[ 50%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader.c.o -MF CMakeFiles/illumina-load.dir/loader.c.o.d -o CMakeFiles/illumina-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c +[ 50%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o -MF CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o.d -o CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/xcheck-ref-align.c -[ 60%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/writer-absolid.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/writer-absolid.c.o -MF CMakeFiles/abi-load.dir/writer-absolid.c.o.d -o CMakeFiles/abi-load.dir/writer-absolid.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/writer-absolid.c -[ 60%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/common-xml.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load/CMakeFiles/cg-load.dir/DependInfo.cmake "--color=" /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); | ^~~~~~~~ +[ 50%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/meta-pair.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/meta-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/meta-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/meta-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/meta-pair.c +[ 50%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-file.c.o +[ 50%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-misleading-indentation -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -MF CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o.d -o CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/zz_fastq-lex.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-file.c.o -MF CMakeFiles/fastq-load.dir/loader-file.c.o.d -o CMakeFiles/fastq-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-file.c +[ 50%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-file.c.o -MF CMakeFiles/sff-load.dir/loader-file.c.o.d -o CMakeFiles/sff-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-file.c +[ 50%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-tbl.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-tbl.c.o -MF CMakeFiles/sra-sort.dir/csra-tbl.c.o.d -o CMakeFiles/sra-sort.dir/csra-tbl.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/csra-tbl.c +[ 50%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/run-xml.c.o -MF CMakeFiles/abi-load.dir/run-xml.c.o.d -o CMakeFiles/abi-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/run-xml.c +[ 51%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-pair.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-pair.c.o -MF CMakeFiles/sra-sort.dir/csra-pair.c.o.d -o CMakeFiles/sra-sort.dir/csra-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/csra-pair.c +[ 51%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/id2name.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/id2name.c.o -MF CMakeFiles/fastqloader.dir/id2name.c.o.d -o CMakeFiles/fastqloader.dir/id2name.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/id2name.c +[ 51%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/writer-illumina.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/writer-illumina.c.o -MF CMakeFiles/illumina-load.dir/writer-illumina.c.o.d -o CMakeFiles/illumina-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/writer-illumina.c +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/proc.cpp: In function 'void printEnvironment(bool)': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/proc.cpp:67:93: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 67 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) + | ^ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/proc.cpp:67:35: note: the temporary was destroyed at the end of the full expression 'make_sequence(constants::env_var::names(), ((size_t)constants::env_var::END_ENUM))' + 67 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/proc.cpp: In function 'void testing_5()': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/proc.cpp:91:93: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 91 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) { + | ^ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/proc.cpp:91:35: note: the temporary was destroyed at the end of the full expression 'make_sequence(constants::env_var::names(), ((size_t)constants::env_var::END_ENUM))' + 91 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) { + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 51%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-fmt.c.o -MF CMakeFiles/fastq-load.dir/loader-fmt.c.o.d -o CMakeFiles/fastq-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-fmt.c +[ 51%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-fmt.c.o -MF CMakeFiles/sff-load.dir/loader-fmt.c.o.d -o CMakeFiles/sff-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-fmt.c +[ 51%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/dir-pair.c.o +[ 51%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/alignment-writer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/dir-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/dir-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/dir-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/dir-pair.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/alignment-writer.c.o -MF CMakeFiles/bam-load.dir/alignment-writer.c.o.d -o CMakeFiles/bam-load.dir/alignment-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/alignment-writer.c +[ 51%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/reference-writer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/reference-writer.c.o -MF CMakeFiles/bam-load.dir/reference-writer.c.o.d -o CMakeFiles/bam-load.dir/reference-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/reference-writer.c +[ 51%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/tbl-pair.c +[ 51%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o.d -o 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/sra-writer.c.o -MF CMakeFiles/sff-load.dir/sra-writer.c.o.d -o CMakeFiles/sff-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/sra-writer.c +[ 51%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-file.c.o -MF CMakeFiles/srf-load.dir/loader-file.c.o.d -o CMakeFiles/srf-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-file.c +[ 51%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sequence-writer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sequence-writer.c.o -MF CMakeFiles/bam-load.dir/sequence-writer.c.o.d -o CMakeFiles/bam-load.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/sequence-writer.c +[ 51%] Linking C executable ../../../bin/sra-sort +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-sort.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -Wl,-z,relro -Wl,-z,now "CMakeFiles/sra-sort.dir/caps.c.o" "CMakeFiles/sra-sort.dir/mem.c.o" "CMakeFiles/sra-sort.dir/membank.c.o" "CMakeFiles/sra-sort.dir/paged-membank.c.o" "CMakeFiles/sra-sort.dir/paged-mmapbank.c.o" "CMakeFiles/sra-sort.dir/except.c.o" "CMakeFiles/sra-sort.dir/idx-mapping.c.o" "CMakeFiles/sra-sort.dir/map-file.c.o" "CMakeFiles/sra-sort.dir/col-pair.c.o" "CMakeFiles/sra-sort.dir/row-set.c.o" "CMakeFiles/sra-sort.dir/simple-row-set.c.o" "CMakeFiles/sra-sort.dir/mapping-row-set.c.o" "CMakeFiles/sra-sort.dir/sorting-row-set.c.o" "CMakeFiles/sra-sort.dir/meta-pair.c.o" "CMakeFiles/sra-sort.dir/dir-pair.c.o" "CMakeFiles/sra-sort.dir/tbl-pair.c.o" "CMakeFiles/sra-sort.dir/db-pair.c.o" "CMakeFiles/sra-sort.dir/glob-poslen.c.o" "CMakeFiles/sra-sort.dir/poslen-col-pair.c.o" "CMakeFiles/sra-sort.dir/ref-alignid-col.c.o" "CMakeFiles/sra-sort.dir/buff-writer.c.o" "CMakeFiles/sra-sort.dir/id-mapper-col.c.o" "CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o" "CMakeFiles/sra-sort.dir/run.c.o" "CMakeFiles/sra-sort.dir/sra-sort.c.o" "CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o" "CMakeFiles/sra-sort.dir/csra-tbl.c.o" "CMakeFiles/sra-sort.dir/csra-pair.c.o" -o ../../../bin/sra-sort /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lbz2 -llzma +[ 51%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/run-xml.c.o -MF CMakeFiles/helicos-load.dir/run-xml.c.o.d -o CMakeFiles/helicos-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/run-xml.c +[ 52%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/db-pair.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/db-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/db-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/db-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/db-pair.c +[ 52%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-fmt.c.o -MF CMakeFiles/srf-load.dir/loader-fmt.c.o.d -o CMakeFiles/srf-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-fmt.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-sort.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sra-sort sra-sort.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-sort.3.0.9 sra-sort.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-sort.3 sra-sort make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/cg-load/CMakeFiles/cg-load.dir/build.make tools/loaders/cg-load/CMakeFiles/cg-load.dir/build +[ 52%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader.c.o -MF CMakeFiles/fastq-load.dir/loader.c.o.d -o CMakeFiles/fastq-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c +[ 52%] Built target sra-sort +make -f tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/build.make tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 60%] Linking C executable ../../../bin/samview -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/samview.dir/link.txt --verbose=1 -[ 61%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/cg-load.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/cg-load.c.o -MF CMakeFiles/cg-load.dir/cg-load.c.o.d -o CMakeFiles/cg-load.dir/cg-load.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/cg-load.c -[ 61%] Linking C executable ../../../bin/sam-dump -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/samview.dir/bam.c.o CMakeFiles/samview.dir/sam.c.o CMakeFiles/samview.dir/samview.c.o -o ../../../bin/samview /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lz -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-dump.dir/link.txt --verbose=1 -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/sam-dump.dir/inputfiles.c.o" "CMakeFiles/sam-dump.dir/perf_log.c.o" "CMakeFiles/sam-dump.dir/rna_splice_log.c.o" "CMakeFiles/sam-dump.dir/sam-dump-opts.c.o" "CMakeFiles/sam-dump.dir/out_redir.c.o" "CMakeFiles/sam-dump.dir/sam-hdr.c.o" "CMakeFiles/sam-dump.dir/sam-hdr1.c.o" "CMakeFiles/sam-dump.dir/matecache.c.o" "CMakeFiles/sam-dump.dir/read_fkt.c.o" "CMakeFiles/sam-dump.dir/sam-aligned.c.o" "CMakeFiles/sam-dump.dir/sam-unaligned.c.o" "CMakeFiles/sam-dump.dir/md_flag.c.o" "CMakeFiles/sam-dump.dir/cg_tools.c.o" "CMakeFiles/sam-dump.dir/sam-dump.c.o" "CMakeFiles/sam-dump.dir/sam-dump3.c.o" "CMakeFiles/sam-dump.dir/dyn_string.c.o" -o ../../../bin/sam-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 61%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o -[ 61%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX 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-Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-file.c.o -MF CMakeFiles/abi-load.dir/loader-file.c.o.d -o CMakeFiles/abi-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-file.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/mem-bank.cpp.o -MF CMakeFiles/bam-load.dir/mem-bank.cpp.o.d -o CMakeFiles/bam-load.dir/mem-bank.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/mem-bank.cpp +[ 53%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o -MF CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o.d -o CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/hdf5/hdf5arrayfile.c +[ 54%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/illumina-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/illumina-fmt.c.o -MF CMakeFiles/illumina-load.dir/illumina-fmt.c.o.d -o CMakeFiles/illumina-load.dir/illumina-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/illumina-fmt.c +[ 55%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/sra-writer.c.o +[ 55%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-454.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-454.c.o -MF CMakeFiles/sff-load.dir/writer-454.c.o.d -o CMakeFiles/sff-load.dir/writer-454.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/writer-454.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/sra-writer.c.o -MF CMakeFiles/srf-load.dir/sra-writer.c.o.d -o CMakeFiles/srf-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/sra-writer.c +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +[ 55%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o -MF CMakeFiles/sratools.dir/uuid.cpp.o.d -o CMakeFiles/sratools.dir/uuid.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/uuid.cpp +[ 55%] Linking C static library ../../../ilib/libfastqloader.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -P CMakeFiles/fastqloader.dir/cmake_clean_target.cmake +[ 55%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-fmt.c.o -MF CMakeFiles/abi-load.dir/loader-fmt.c.o.d -o CMakeFiles/abi-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-fmt.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastqloader.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../ilib/libfastqloader.a "CMakeFiles/fastqloader.dir/spot-assembler.c.o" "CMakeFiles/fastqloader.dir/common-writer.c.o" "CMakeFiles/fastqloader.dir/sequence-writer.c.o" "CMakeFiles/fastqloader.dir/common-reader.c.o" "CMakeFiles/fastqloader.dir/fastq-reader.c.o" "CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o" "CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o" CMakeFiles/fastqloader.dir/id2name.c.o +[ 56%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump3.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump3.c.o -MF CMakeFiles/sam-dump.dir/sam-dump3.c.o.d -o CMakeFiles/sam-dump.dir/sam-dump3.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sam-dump3.c +/usr/bin/ranlib ../../../ilib/libfastqloader.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/general-loader/CMakeFiles/general-loader.dir/build.make tools/loaders/general-loader/CMakeFiles/general-loader.dir/build -[ 61%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-fmt.c.o +[ 56%] Built target fastqloader +make -f tools/loaders/cg-load/CMakeFiles/cg-load.dir/build.make tools/loaders/cg-load/CMakeFiles/cg-load.dir/depend +[ 56%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sam-dump3.c: In function 'KMain': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/sam-dump3.c:557:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 557 | ReportBuildDate( __DATE__ ); + | ^~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -MF CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o.d -o CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/glob-poslen.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load/CMakeFiles/cg-load.dir/DependInfo.cmake "--color=" +[ 57%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-ion-torrent.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-ion-torrent.c.o -MF CMakeFiles/sff-load.dir/writer-ion-torrent.c.o.d -o CMakeFiles/sff-load.dir/writer-ion-torrent.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/writer-ion-torrent.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sff-load sff-load.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-fmt.c.o -MF CMakeFiles/helicos-load.dir/loader-fmt.c.o.d -o CMakeFiles/helicos-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-fmt.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sff-load.3.0.9 sff-load.3 +make -f tools/loaders/cg-load/CMakeFiles/cg-load.dir/build.make tools/loaders/cg-load/CMakeFiles/cg-load.dir/build +[ 57%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/poslen-col-pair.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 58%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/sra-writer.c.o +[ 58%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/cg-load.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/sra-writer.c.o -MF CMakeFiles/abi-load.dir/sra-writer.c.o.d -o CMakeFiles/abi-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/sra-writer.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/cg-load.c.o -MF CMakeFiles/cg-load.dir/cg-load.c.o.d -o CMakeFiles/cg-load.dir/cg-load.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/cg-load.c +[ 58%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader.c.o -MF CMakeFiles/srf-load.dir/loader.c.o.d -o CMakeFiles/srf-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c +[ 58%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/dyn_string.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/dyn_string.c.o -MF CMakeFiles/sam-dump.dir/dyn_string.c.o.d -o CMakeFiles/sam-dump.dir/dyn_string.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-pileup/dyn_string.c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/cg-load.c: In function 'DB_Fini': /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/cg-load.c:229:65: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 229 | if( (rc = KLoaderMeta_Write(node, p->argv0, __DATE__, "Complete Genomics", KAppVersion())) != 0 ) { | ^~~~~~~~ -[ 61%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-tbl.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sff-load.3 sff-load -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-tbl.c.o -MF CMakeFiles/sra-sort.dir/csra-tbl.c.o.d -o CMakeFiles/sra-sort.dir/csra-tbl.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/csra-tbl.c -[ 61%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-absolid.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-absolid.c.o -MF CMakeFiles/srf-load.dir/ztr-absolid.c.o.d -o CMakeFiles/srf-load.dir/ztr-absolid.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/ztr-absolid.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 61%] Built target qa-stats -[ 61%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/general-loader.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/general-loader.cpp.o -MF CMakeFiles/general-loader.dir/general-loader.cpp.o.d -o CMakeFiles/general-loader.dir/general-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/general-loader.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f samview.3.0.9 -make -f tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv samview samview.3.0.9 +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +[ 58%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o -MF CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o.d -o CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/ref-alignid-col.c +[ 59%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o -MF CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o.d -o CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/hdf5/hdf5dir.c +[ 59%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-file.c.o +[ 59%] Linking C executable ../../../bin/illumina-load +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-file.c.o -MF CMakeFiles/helicos-load.dir/loader-file.c.o.d -o CMakeFiles/helicos-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-file.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/illumina-load.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/illumina-load.dir/pstring.c.o" "CMakeFiles/illumina-load.dir/common-xml.c.o" "CMakeFiles/illumina-load.dir/experiment-xml.c.o" "CMakeFiles/illumina-load.dir/run-xml.c.o" "CMakeFiles/illumina-load.dir/loader-file.c.o" "CMakeFiles/illumina-load.dir/loader-fmt.c.o" "CMakeFiles/illumina-load.dir/sra-writer.c.o" "CMakeFiles/illumina-load.dir/loader.c.o" "CMakeFiles/illumina-load.dir/writer-illumina.c.o" "CMakeFiles/illumina-load.dir/illumina-fmt.c.o" -o ../../../bin/illumina-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so +[ 59%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/buff-writer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/buff-writer.c.o -MF 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-Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/sff-fmt.c.o -MF CMakeFiles/sff-load.dir/sff-fmt.c.o.d -o CMakeFiles/sff-load.dir/sff-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/sff-fmt.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/run-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/run-xml.c.o.d -o CMakeFiles/pacbio-loadxml.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/run-xml.c +[ 59%] Linking C executable ../../../bin/sam-dump +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-dump.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/sam-dump.dir/inputfiles.c.o" "CMakeFiles/sam-dump.dir/perf_log.c.o" "CMakeFiles/sam-dump.dir/rna_splice_log.c.o" "CMakeFiles/sam-dump.dir/sam-dump-opts.c.o" "CMakeFiles/sam-dump.dir/out_redir.c.o" "CMakeFiles/sam-dump.dir/sam-hdr.c.o" "CMakeFiles/sam-dump.dir/sam-hdr1.c.o" "CMakeFiles/sam-dump.dir/matecache.c.o" "CMakeFiles/sam-dump.dir/read_fkt.c.o" "CMakeFiles/sam-dump.dir/sam-aligned.c.o" "CMakeFiles/sam-dump.dir/sam-unaligned.c.o" "CMakeFiles/sam-dump.dir/md_flag.c.o" "CMakeFiles/sam-dump.dir/cg_tools.c.o" "CMakeFiles/sam-dump.dir/sam-dump.c.o" "CMakeFiles/sam-dump.dir/sam-dump3.c.o" "CMakeFiles/sam-dump.dir/dyn_string.c.o" -o ../../../bin/sam-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 59%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader.c.o -MF CMakeFiles/abi-load.dir/loader.c.o.d -o CMakeFiles/abi-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c +[ 59%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-fmt.c.o -MF CMakeFiles/helicos-load.dir/loader-fmt.c.o.d -o CMakeFiles/helicos-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-fmt.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sam-dump.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s samview.3.0.9 samview.3 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sam-dump sam-dump.3.0.9 -[ 61%] Built target sff-load -[ 62%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-huffman.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-huffman.c.o -MF CMakeFiles/srf-load.dir/ztr-huffman.c.o.d -o CMakeFiles/srf-load.dir/ztr-huffman.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/ztr-huffman.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sam-dump.3.0.9 sam-dump.3 -[ 63%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-pair.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sam-dump.3 sam-dump +[ 59%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o -MF CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o.d -o CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/hdf5/hdf5file.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.0.9 sam-dump-driver +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-pair.c.o -MF CMakeFiles/sra-sort.dir/csra-pair.c.o.d -o CMakeFiles/sra-sort.dir/csra-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/csra-pair.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s samview.3 samview +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f illumina-load.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv illumina-load illumina-load.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s illumina-load.3.0.9 illumina-load.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s illumina-load.3 illumina-load +[ 59%] Built target sam-dump +make -f tools/loaders/general-loader/CMakeFiles/general-loader.dir/build.make tools/loaders/general-loader/CMakeFiles/general-loader.dir/depend make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o -MF CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o.d -o CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/id-mapper-col.c +make -f tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/depend +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/DependInfo.cmake "--color=" +make -f tools/loaders/general-loader/CMakeFiles/general-loader.dir/build.make tools/loaders/general-loader/CMakeFiles/general-loader.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build -[ 63%] Built target sam-dump make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 63%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/sra-writer.c.o -[ 63%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader.c.o +[ 59%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/general-loader.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-context.c.o -MF CMakeFiles/pacbio-load.dir/pl-context.c.o.d -o CMakeFiles/pacbio-load.dir/pl-context.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-context.c +[ 59%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/sra-writer.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader.c.o -MF CMakeFiles/helicos-load.dir/loader.c.o.d -o CMakeFiles/helicos-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c -[ 64%] Built target samview -[ 64%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o +[ 60%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o -MF CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o.d -o CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp -[ 64%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-reads.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-reads.c.o -MF CMakeFiles/cg-load.dir/factory-reads.c.o.d -o CMakeFiles/cg-load.dir/factory-reads.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-reads.c -[ 64%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -MF CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o.d -o CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/fasterq-dump/fasterq-dump.c -[ 64%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/testsource.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/testsource.cpp.o -MF 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o -MF CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o.d -o CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/hdf5/hdf5dir.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/helicos-fmt.c.o -MF CMakeFiles/helicos-load.dir/helicos-fmt.c.o.d -o CMakeFiles/helicos-load.dir/helicos-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/helicos-fmt.c -[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/writer-helicos.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 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/usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/writer-helicos.c.o -MF CMakeFiles/helicos-load.dir/writer-helicos.c.o.d -o CMakeFiles/helicos-load.dir/writer-helicos.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/writer-helicos.c -[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-fmt.c.o -[ 65%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-fmt.c.o -MF CMakeFiles/illumina-load.dir/loader-fmt.c.o.d -o CMakeFiles/illumina-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-fmt.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o -MF CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o.d -o CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/hdf5/hdf5file.c -[ 65%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -[ 66%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -MF CMakeFiles/sra-sort-cg.dir/sra-sort.c.o.d -o CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/sra-sort.c -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ -[ 66%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -MF CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o.d -o CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/xcheck-ref-align.c -[ 66%] Linking C executable ../../../bin/fastq-load -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastq-load.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -MF CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o.d -o CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/csra-tbl.c +[ 60%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o -MF CMakeFiles/sratools.dir/accession.cpp.o.d -o CMakeFiles/sratools.dir/accession.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.cpp +[ 60%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-tools.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-tools.c.o -MF CMakeFiles/pacbio-load.dir/pl-tools.c.o.d -o CMakeFiles/pacbio-load.dir/pl-tools.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-tools.c +[ 60%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-zmw.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-zmw.c.o -MF CMakeFiles/pacbio-load.dir/pl-zmw.c.o.d -o CMakeFiles/pacbio-load.dir/pl-zmw.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-zmw.c +[ 60%] Linking C executable ../../../bin/sff-load +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/sff-load.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/sff-load.dir/pstring.c.o" "CMakeFiles/sff-load.dir/common-xml.c.o" "CMakeFiles/sff-load.dir/experiment-xml.c.o" "CMakeFiles/sff-load.dir/run-xml.c.o" "CMakeFiles/sff-load.dir/loader-file.c.o" "CMakeFiles/sff-load.dir/loader-fmt.c.o" "CMakeFiles/sff-load.dir/sra-writer.c.o" "CMakeFiles/sff-load.dir/loader.c.o" "CMakeFiles/sff-load.dir/writer-454.c.o" "CMakeFiles/sff-load.dir/writer-ion-torrent.c.o" "CMakeFiles/sff-load.dir/sff-fmt.c.o" -o ../../../bin/sff-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so +[ 60%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-illumina.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-illumina.c.o -MF CMakeFiles/fastq-load.dir/writer-illumina.c.o.d -o CMakeFiles/fastq-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/writer-illumina.c In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp:32: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/../database-loader.cpp:699:90: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 699 | rc = KLoaderMeta_WriteWithVersion ( node, m_programName.c_str(), __DATE__, KAppVersion(), m_softwareName.c_str(), m_softwareVersion ); | ^~~~~~~~ -[ 66%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-context.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-context.c.o -MF CMakeFiles/pacbio-load.dir/pl-context.c.o.d -o CMakeFiles/pacbio-load.dir/pl-context.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-context.c -[ 66%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/sra-writer.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/sra-writer.c.o -MF CMakeFiles/illumina-load.dir/sra-writer.c.o.d -o CMakeFiles/illumina-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/sra-writer.c -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/fastq-load.dir/pstring.c.o" "CMakeFiles/fastq-load.dir/common-xml.c.o" "CMakeFiles/fastq-load.dir/experiment-xml.c.o" "CMakeFiles/fastq-load.dir/run-xml.c.o" "CMakeFiles/fastq-load.dir/loader-file.c.o" "CMakeFiles/fastq-load.dir/loader-fmt.c.o" "CMakeFiles/fastq-load.dir/sra-writer.c.o" "CMakeFiles/fastq-load.dir/loader.c.o" "CMakeFiles/fastq-load.dir/writer-illumina.c.o" "CMakeFiles/fastq-load.dir/writer-454.c.o" "CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o" "CMakeFiles/fastq-load.dir/fastq-fmt.c.o" -o ../../../bin/fastq-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so +[ 60%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o -MF CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o.d -o CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/capture-first-half-aligned.c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp:619:86: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 619 | REQUIRE_EQ ( string ( __DATE__), GetDbMetadataAttr ( "SOFTWARE/loader", "date" ) ); | ^ -[ 66%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-absolid.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-absolid.c.o -MF CMakeFiles/srf-load.dir/srf-absolid.c.o.d -o CMakeFiles/srf-load.dir/srf-absolid.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/srf-absolid.c -[ 66%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-pair.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/csra-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/csra-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/csra-pair.c -[ 66%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-tag-lfr.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-tag-lfr.c.o -MF CMakeFiles/cg-load.dir/factory-tag-lfr.c.o.d -o CMakeFiles/cg-load.dir/factory-tag-lfr.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-tag-lfr.c +[ 60%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o -MF CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o.d -o CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-basecalls_cmn.c +[ 60%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/run.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/run.c.o -MF CMakeFiles/sra-sort-cg.dir/run.c.o.d -o CMakeFiles/sra-sort-cg.dir/run.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/run.c +[ 60%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader.c.o -MF CMakeFiles/helicos-load.dir/loader.c.o.d -o CMakeFiles/helicos-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c +[ 60%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o -MF CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o.d -o CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-evidence-intervals.c +[ 60%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-sequence.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-sequence.c.o -MF CMakeFiles/pacbio-load.dir/pl-sequence.c.o.d -o CMakeFiles/pacbio-load.dir/pl-sequence.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-sequence.c +[ 60%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf.c.o -MF CMakeFiles/srf-load.dir/srf.c.o.d -o CMakeFiles/srf-load.dir/srf.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/srf.c +[ 61%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-file.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader-file.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-file.c +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +[ 61%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-consensus.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-consensus.c.o -MF CMakeFiles/pacbio-load.dir/pl-consensus.c.o.d -o CMakeFiles/pacbio-load.dir/pl-consensus.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-consensus.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sff-load.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sff-load sff-load.3.0.9 +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/loader-imp.c:3453:44: warning: "/*" within comment [-Wcomment] + 3453 | int const logLevel = klogWarn; /*G.assembleWithSecondary ? klogWarn : klogErr; +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/loader-imp.c:4163:48: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 4163 | rc = KLoaderMeta_Write(node, progName, __DATE__, "BAM", KAppVersion()); + | ^~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sff-load.3.0.9 sff-load.3 +[ 61%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sff-load.3 sff-load +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-fmt.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 61%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sra-sort.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -MF CMakeFiles/sra-sort-cg.dir/sra-sort.c.o.d -o CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/sra-sort.c +[ 61%] Built target sff-load make -f tools/loaders/general-loader/test/CMakeFiles/test-gw-dumper.dir/build.make tools/loaders/general-loader/test/CMakeFiles/test-gw-dumper.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/test-gw-dumper.dir/DependInfo.cmake "--color=" -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c: In function 'CGMappings15_Read': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c:248:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] - 248 | if( tmp[0] < 33 || tmp[0] > 126 ) { - | ~~~^~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c:225:14: note: 'tmp' declared here - 225 | char tmp[2]; - | ^~~ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 66%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-tools.c.o make -f tools/loaders/general-loader/test/CMakeFiles/test-gw-dumper.dir/build.make tools/loaders/general-loader/test/CMakeFiles/test-gw-dumper.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-tools.c.o -MF CMakeFiles/pacbio-load.dir/pl-tools.c.o.d -o CMakeFiles/pacbio-load.dir/pl-tools.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-tools.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 66%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_3.c.o +[ 61%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/test-gw-dumper.dir/test-gw-dumper.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/test-gw-dumper.dir/test-gw-dumper.cpp.o -MF CMakeFiles/test-gw-dumper.dir/test-gw-dumper.cpp.o.d -o CMakeFiles/test-gw-dumper.dir/test-gw-dumper.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/test-gw-dumper.cpp +[ 62%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -MF CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o.d -o CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/xcheck-ref-align.c +[ 62%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-fmt.c.o -MF CMakeFiles/srf-load.dir/srf-fmt.c.o.d -o CMakeFiles/srf-load.dir/srf-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/srf-fmt.c +[ 62%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o -MF CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o.d -o CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/sra-writer.c +[ 63%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-454.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-454.c.o -MF CMakeFiles/fastq-load.dir/writer-454.c.o.d -o CMakeFiles/fastq-load.dir/writer-454.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/writer-454.c +[ 63%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-passes.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-passes.c.o -MF CMakeFiles/pacbio-load.dir/pl-passes.c.o.d -o CMakeFiles/pacbio-load.dir/pl-passes.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-passes.c +[ 63%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -MF CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o.d -o CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/csra-tbl.c +In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.cpp:36: +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ^ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +[ 63%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-illumina.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-illumina.c.o -MF CMakeFiles/srf-load.dir/writer-illumina.c.o.d -o CMakeFiles/srf-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/writer-illumina.c +[ 63%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c +[ 64%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-metrics.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-metrics.c.o -MF CMakeFiles/pacbio-load.dir/pl-metrics.c.o.d -o CMakeFiles/pacbio-load.dir/pl-metrics.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-metrics.c +[ 64%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o +[ 64%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/writer-absolid.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o -MF CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o.d -o CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/writer-ion-torrent.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/writer-absolid.c.o -MF CMakeFiles/abi-load.dir/writer-absolid.c.o.d -o CMakeFiles/abi-load.dir/writer-absolid.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/writer-absolid.c +[ 64%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-pair.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/csra-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/csra-pair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-sort/csra-pair.c +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +[ 64%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o -MF CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o.d -o CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-evidence-dnbs.c +[ 64%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-mappings.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-mappings.c.o -MF CMakeFiles/cg-load.dir/factory-mappings.c.o.d -o CMakeFiles/cg-load.dir/factory-mappings.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c +[ 64%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/fastq-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/fastq-fmt.c.o -MF CMakeFiles/fastq-load.dir/fastq-fmt.c.o.d -o CMakeFiles/fastq-load.dir/fastq-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/fastq-fmt.c make -f tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build.make tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/depend -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_3.c.o -MF CMakeFiles/cg-load.dir/f1_3.c.o.d -o CMakeFiles/cg-load.dir/f1_3.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/f1_3.c +[ 64%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/low-match-count.cpp.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/low-match-count.cpp.o -MF CMakeFiles/bam-load.dir/low-match-count.cpp.o.d -o CMakeFiles/bam-load.dir/low-match-count.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/low-match-count.cpp cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/DependInfo.cmake "--color=" -[ 66%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/test-gw-dumper.dir/test-gw-dumper.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/test-gw-dumper.dir/test-gw-dumper.cpp.o -MF CMakeFiles/test-gw-dumper.dir/test-gw-dumper.cpp.o.d -o CMakeFiles/test-gw-dumper.dir/test-gw-dumper.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/test-gw-dumper.cpp -[ 66%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_5.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_5.c.o -MF CMakeFiles/cg-load.dir/f1_5.c.o.d -o CMakeFiles/cg-load.dir/f1_5.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/f1_5.c +[ 64%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/service.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/service.cpp.o -MF CMakeFiles/sratools.dir/service.cpp.o.d -o CMakeFiles/sratools.dir/service.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/service.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build.make tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 66%] Linking CXX executable ../../../test-bin/Test_Drivertool_SDLResponse -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_SDLResponse.dir/link.txt --verbose=1 -[ 67%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/absolid-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 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tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-illumina.c.o -MF CMakeFiles/srf-load.dir/ztr-illumina.c.o.d -o CMakeFiles/srf-load.dir/ztr-illumina.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/ztr-illumina.c +[ 64%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/makeinputs.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-zmw.c.o -MF CMakeFiles/pacbio-load.dir/pl-zmw.c.o.d -o CMakeFiles/pacbio-load.dir/pl-zmw.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-zmw.c -[ 67%] Linking C executable ../../../bin/sra-sort -[ 67%] Linking C executable ../../../bin/fasterq-dump -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-sort.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/fasterq-dump.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f fastq-load.3.0.9 -[ 67%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/testsource.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/testsource.cpp.o -MF CMakeFiles/makeinputs.dir/testsource.cpp.o.d -o CMakeFiles/makeinputs.dir/testsource.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/testsource.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv fastq-load fastq-load.3.0.9 -[ 67%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o" -o ../../../test-bin/Test_Drivertool_SDLResponse -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 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"CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o" "CMakeFiles/fasterq-dump.dir/db_join.c.o" "CMakeFiles/fasterq-dump.dir/tbl_join.c.o" "CMakeFiles/fasterq-dump.dir/temp_registry.c.o" "CMakeFiles/fasterq-dump.dir/copy_machine.c.o" "CMakeFiles/fasterq-dump.dir/multi_writer.c.o" "CMakeFiles/fasterq-dump.dir/concatenator.c.o" "CMakeFiles/fasterq-dump.dir/ref_inventory.c.o" "CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o" -o ../../../bin/fasterq-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fastq-load.3 fastq-load -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -Wl,-z,relro -Wl,-z,now "CMakeFiles/sra-sort.dir/caps.c.o" "CMakeFiles/sra-sort.dir/mem.c.o" "CMakeFiles/sra-sort.dir/membank.c.o" "CMakeFiles/sra-sort.dir/paged-membank.c.o" "CMakeFiles/sra-sort.dir/paged-mmapbank.c.o" "CMakeFiles/sra-sort.dir/except.c.o" "CMakeFiles/sra-sort.dir/idx-mapping.c.o" "CMakeFiles/sra-sort.dir/map-file.c.o" "CMakeFiles/sra-sort.dir/col-pair.c.o" "CMakeFiles/sra-sort.dir/row-set.c.o" "CMakeFiles/sra-sort.dir/simple-row-set.c.o" "CMakeFiles/sra-sort.dir/mapping-row-set.c.o" "CMakeFiles/sra-sort.dir/sorting-row-set.c.o" "CMakeFiles/sra-sort.dir/meta-pair.c.o" "CMakeFiles/sra-sort.dir/dir-pair.c.o" "CMakeFiles/sra-sort.dir/tbl-pair.c.o" "CMakeFiles/sra-sort.dir/db-pair.c.o" "CMakeFiles/sra-sort.dir/glob-poslen.c.o" "CMakeFiles/sra-sort.dir/poslen-col-pair.c.o" "CMakeFiles/sra-sort.dir/ref-alignid-col.c.o" "CMakeFiles/sra-sort.dir/buff-writer.c.o" "CMakeFiles/sra-sort.dir/id-mapper-col.c.o" "CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o" "CMakeFiles/sra-sort.dir/run.c.o" "CMakeFiles/sra-sort.dir/sra-sort.c.o" "CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o" "CMakeFiles/sra-sort.dir/csra-tbl.c.o" "CMakeFiles/sra-sort.dir/csra-pair.c.o" -o ../../../bin/sra-sort /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lbz2 -llzma -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 67%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-sequence.c.o -[ 67%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/protocol-parser.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-sequence.c.o -MF CMakeFiles/pacbio-load.dir/pl-sequence.c.o.d -o CMakeFiles/pacbio-load.dir/pl-sequence.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-sequence.c +[ 64%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/protocol-parser.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/protocol-parser.cpp.o -MF CMakeFiles/general-loader.dir/protocol-parser.cpp.o.d -o CMakeFiles/general-loader.dir/protocol-parser.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/protocol-parser.cpp -make -f tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/depend -[ 67%] Built target fastq-load -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/DependInfo.cmake "--color=" -[ 67%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o.d -o CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/experiment-xml.c -[ 67%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-consensus.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-consensus.c.o -MF CMakeFiles/pacbio-load.dir/pl-consensus.c.o.d -o CMakeFiles/pacbio-load.dir/pl-consensus.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-consensus.c +[ 64%] Linking C executable ../../../bin/sra-sort-cg +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-sort-cg.dir/link.txt --verbose=1 +[ 64%] Linking CXX executable ../../../bin/sra-info +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-info.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -Wl,-z,relro -Wl,-z,now "CMakeFiles/sra-sort-cg.dir/caps.c.o" "CMakeFiles/sra-sort-cg.dir/mem.c.o" "CMakeFiles/sra-sort-cg.dir/membank.c.o" "CMakeFiles/sra-sort-cg.dir/paged-membank.c.o" "CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o" "CMakeFiles/sra-sort-cg.dir/except.c.o" "CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o" "CMakeFiles/sra-sort-cg.dir/map-file.c.o" "CMakeFiles/sra-sort-cg.dir/col-pair.c.o" "CMakeFiles/sra-sort-cg.dir/row-set.c.o" "CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/meta-pair.c.o" "CMakeFiles/sra-sort-cg.dir/dir-pair.c.o" "CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o" "CMakeFiles/sra-sort-cg.dir/db-pair.c.o" "CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o" "CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o" "CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o" "CMakeFiles/sra-sort-cg.dir/buff-writer.c.o" "CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o" "CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o" "CMakeFiles/sra-sort-cg.dir/run.c.o" "CMakeFiles/sra-sort-cg.dir/sra-sort.c.o" "CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o" "CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o" "CMakeFiles/sra-sort-cg.dir/csra-pair.c.o" -o ../../../bin/sra-sort-cg /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lbz2 -llzma +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/sra-info.dir/main.cpp.o" "CMakeFiles/sra-info.dir/sra-info.cpp.o" "CMakeFiles/sra-info.dir/formatter.cpp.o" -o ../../../bin/sra-info /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c: In function 'CGMappings15_Read': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c:248:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] + 248 | if( tmp[0] < 33 || tmp[0] > 126 ) { + | ~~~^~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c:225:14: note: 'tmp' declared here + 225 | char tmp[2]; + | ^~~ +[ 64%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-illumina.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-illumina.c.o -MF CMakeFiles/srf-load.dir/srf-illumina.c.o.d -o CMakeFiles/srf-load.dir/srf-illumina.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/srf-illumina.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-sort-cg.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sra-sort-cg sra-sort-cg.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-sort-cg.3.0.9 sra-sort-cg.3 +[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/absolid-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/absolid-fmt.c.o -MF CMakeFiles/abi-load.dir/absolid-fmt.c.o.d -o CMakeFiles/abi-load.dir/absolid-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/absolid-fmt.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-sort-cg.3 sra-sort-cg +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c: In function 'CGMappings22_Read': /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c:311:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] 311 | if( tmp[0] < 33 || tmp[0] > 126 ) { @@ -4627,225 +4507,273 @@ /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c:287:14: note: 'tmp' declared here 287 | char tmp[2]; | ^~~ -[ 67%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/writer-illumina.c.o -[ 67%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/run-xml.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/writer-illumina.c.o -MF CMakeFiles/illumina-load.dir/writer-illumina.c.o.d -o CMakeFiles/illumina-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/writer-illumina.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/run-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/run-xml.c.o.d -o CMakeFiles/pacbio-loadxml.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/run-xml.c +[ 65%] Built target sra-sort-cg +make -f tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/depend +[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/writer-helicos.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/writer-helicos.c.o -MF CMakeFiles/helicos-load.dir/writer-helicos.c.o.d -o CMakeFiles/helicos-load.dir/writer-helicos.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/writer-helicos.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/DependInfo.cmake "--color=" +[ 65%] Linking CXX executable ../../../../test-bin/test-gw-dumper +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-gw-dumper.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ -[ 68%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/illumina-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/illumina-fmt.c.o -MF CMakeFiles/illumina-load.dir/illumina-fmt.c.o.d -o CMakeFiles/illumina-load.dir/illumina-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/illumina-fmt.c -[ 68%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-passes.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-passes.c.o -MF CMakeFiles/pacbio-load.dir/pl-passes.c.o.d -o CMakeFiles/pacbio-load.dir/pl-passes.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-passes.c -[ 68%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-gw-dumper.dir/test-gw-dumper.cpp.o" -o ../../../../test-bin/test-gw-dumper ../../../../ilib/libgeneral-writer.a +[ 65%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o -MF CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o.d -o CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp -[ 69%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-metrics.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-metrics.c.o -MF CMakeFiles/pacbio-load.dir/pl-metrics.c.o.d -o CMakeFiles/pacbio-load.dir/pl-metrics.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-metrics.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-info.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sra-info sra-info.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-info.3.0.9 sra-info.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-info.3 sra-info +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 65%] Built target sra-info make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/depend -[ 69%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/database-loader.cpp.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 69%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_7.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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-D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/database-loader.cpp.o -MF CMakeFiles/general-loader.dir/database-loader.cpp.o.d -o CMakeFiles/general-loader.dir/database-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/database-loader.cpp -make -f tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build.make tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/vdb-lock /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-lock /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f fasterq-dump.3.0.9 -[ 70%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/main.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/main.cpp.o -MF CMakeFiles/general-loader.dir/main.cpp.o.d -o CMakeFiles/general-loader.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/main.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv fasterq-dump fasterq-dump.3.0.9 +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c: In function 'CGMappings25_Read': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c:382:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] + 382 | if( tmp[0] < 33 || tmp[0] > 126 ) { + | ~~~^~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c:358:14: note: 'tmp' declared here + 358 | char tmp[2]; + | ^~~ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build +[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/helicos-fmt.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fasterq-dump.3.0.9 fasterq-dump.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-sort.3.0.9 -make -f tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/build.make tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/depend -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fasterq-dump.3 fasterq-dump -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sra-sort sra-sort.3.0.9 -[ 71%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_0.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_0.c.o -MF CMakeFiles/cg-load.dir/f2_0.c.o.d -o CMakeFiles/cg-load.dir/f2_0.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/f2_0.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-sort.3.0.9 sra-sort.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.0.9 fasterq-dump-driver +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/helicos-fmt.c.o -MF CMakeFiles/helicos-load.dir/helicos-fmt.c.o.d -o CMakeFiles/helicos-load.dir/helicos-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/helicos-fmt.c +[ 65%] Linking C executable ../../../bin/fastq-load +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastq-load.dir/link.txt --verbose=1 +[ 65%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o -MF CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o.d -o CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/fastq-load.dir/pstring.c.o" "CMakeFiles/fastq-load.dir/common-xml.c.o" "CMakeFiles/fastq-load.dir/experiment-xml.c.o" "CMakeFiles/fastq-load.dir/run-xml.c.o" "CMakeFiles/fastq-load.dir/loader-file.c.o" "CMakeFiles/fastq-load.dir/loader-fmt.c.o" "CMakeFiles/fastq-load.dir/sra-writer.c.o" "CMakeFiles/fastq-load.dir/loader.c.o" "CMakeFiles/fastq-load.dir/writer-illumina.c.o" "CMakeFiles/fastq-load.dir/writer-454.c.o" "CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o" "CMakeFiles/fastq-load.dir/fastq-fmt.c.o" -o ../../../bin/fastq-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-absolid.c.o +[ 65%] Built target test-gw-dumper +[ 65%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-regions.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-absolid.c.o -MF CMakeFiles/srf-load.dir/writer-absolid.c.o.d -o CMakeFiles/srf-load.dir/writer-absolid.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/writer-absolid.c +make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/depend +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-regions.c.o -MF CMakeFiles/pacbio-load.dir/pl-regions.c.o.d -o CMakeFiles/pacbio-load.dir/pl-regions.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-regions.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/vdb-unlock /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-unlock 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-reads.c +make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 66%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o -MF CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o.d -o CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/idx-text/checklookup.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f fastq-load.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv fastq-load fastq-load.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fastq-load.3.0.9 fastq-load.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fastq-load.3 fastq-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build.make tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build +[ 66%] Linking C executable ../../../bin/helicos-load +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/helicos-load.dir/link.txt --verbose=1 +[ 66%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o +[ 66%] Built target fastq-load +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -MF CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o.d -o CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/pacbio-fmt.c +make -f tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build.make tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/vdb-lock /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-lock /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/DependInfo.cmake "--color=" +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/helicos-load.dir/pstring.c.o" "CMakeFiles/helicos-load.dir/common-xml.c.o" "CMakeFiles/helicos-load.dir/experiment-xml.c.o" "CMakeFiles/helicos-load.dir/run-xml.c.o" "CMakeFiles/helicos-load.dir/loader-file.c.o" "CMakeFiles/helicos-load.dir/loader-fmt.c.o" "CMakeFiles/helicos-load.dir/sra-writer.c.o" "CMakeFiles/helicos-load.dir/loader.c.o" "CMakeFiles/helicos-load.dir/writer-helicos.c.o" "CMakeFiles/helicos-load.dir/helicos-fmt.c.o" -o ../../../bin/helicos-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-sort.3 sra-sort +make -f tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build.make tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 71%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o +[ 66%] Building C object tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/vdb-lock.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-lock && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-lock\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/vdb-lock.c.o -MF CMakeFiles/vdb-lock.dir/vdb-lock.c.o.d -o CMakeFiles/vdb-lock.dir/vdb-lock.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/vdb-lock/vdb-lock.c +[ 66%] Linking C executable ../../../bin/abi-load +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/abi-load.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/abi-load.dir/pstring.c.o" "CMakeFiles/abi-load.dir/common-xml.c.o" "CMakeFiles/abi-load.dir/experiment-xml.c.o" "CMakeFiles/abi-load.dir/run-xml.c.o" "CMakeFiles/abi-load.dir/loader-file.c.o" "CMakeFiles/abi-load.dir/loader-fmt.c.o" "CMakeFiles/abi-load.dir/sra-writer.c.o" "CMakeFiles/abi-load.dir/loader.c.o" "CMakeFiles/abi-load.dir/writer-absolid.c.o" "CMakeFiles/abi-load.dir/absolid-fmt.c.o" -o ../../../bin/abi-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so +[ 66%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-absolid.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-absolid.c.o -MF CMakeFiles/srf-load.dir/ztr-absolid.c.o.d -o CMakeFiles/srf-load.dir/ztr-absolid.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/ztr-absolid.c +[ 66%] Linking C executable ../../../bin/pacbio-loadxml +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-loadxml.dir/link.txt --verbose=1 +[ 66%] Linking C executable ../../../bin/vdb-lock +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-lock && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-lock.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/pacbio-loadxml.dir/pstring.c.o" "CMakeFiles/pacbio-loadxml.dir/common-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/run-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/loader-file.c.o" "CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o" "CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o" "CMakeFiles/pacbio-loadxml.dir/loader.c.o" "CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o" -o ../../../bin/pacbio-loadxml ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so +[ 67%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-huffman.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-huffman.c.o -MF CMakeFiles/srf-load.dir/ztr-huffman.c.o.d -o CMakeFiles/srf-load.dir/ztr-huffman.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/ztr-huffman.c +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/vdb-lock.dir/vdb-lock.c.o" -o ../../../bin/vdb-lock /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +[ 67%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-tag-lfr.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-tag-lfr.c.o -MF CMakeFiles/cg-load.dir/factory-tag-lfr.c.o.d -o CMakeFiles/cg-load.dir/factory-tag-lfr.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-tag-lfr.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f helicos-load.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv helicos-load helicos-load.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s helicos-load.3.0.9 helicos-load.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s helicos-load.3 helicos-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o -MF CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o.d -o CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp +[ 67%] Built target helicos-load +make -f tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/build.make tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/vdb-unlock /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-unlock /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f abi-load.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv abi-load abi-load.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s abi-load.3.0.9 abi-load.3 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s abi-load.3 abi-load make -f tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/build.make tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/build -[ 71%] Built target Test_Drivertool_SDLResponse -[ 71%] Building C object tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/vdb-lock.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-lock && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-lock\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/vdb-lock.c.o -MF CMakeFiles/vdb-lock.dir/vdb-lock.c.o.d -o CMakeFiles/vdb-lock.dir/vdb-lock.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/vdb-lock/vdb-lock.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 67%] Building C object tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-unlock && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-unlock\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o -MF CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o.d -o CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/vdb-unlock/vdb-unlock.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-lock.3.0.9 +[ 67%] Built target abi-load make -f tools/internal/align-cache/CMakeFiles/align-cache.dir/build.make tools/internal/align-cache/CMakeFiles/align-cache.dir/depend -[ 71%] Built target fasterq-dump -[ 71%] Building C object tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-lock vdb-lock.3.0.9 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/align-cache /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/align-cache /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/align-cache/CMakeFiles/align-cache.dir/DependInfo.cmake "--color=" -[ 71%] Built target sra-sort -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-unlock && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-unlock\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o -MF CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o.d -o CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/vdb-unlock/vdb-unlock.c -[ 71%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_2.c.o -[ 71%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_4.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_2.c.o -MF CMakeFiles/cg-load.dir/f2_2.c.o.d -o CMakeFiles/cg-load.dir/f2_2.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/f2_2.c -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/database-loader.cpp:699:90: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 699 | rc = KLoaderMeta_WriteWithVersion ( node, m_programName.c_str(), __DATE__, KAppVersion(), m_softwareName.c_str(), m_softwareVersion ); - | ^~~~~~~~ -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_4.c.o -MF CMakeFiles/cg-load.dir/f2_4.c.o.d -o CMakeFiles/cg-load.dir/f2_4.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/f2_4.c -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c: In function 'CGMappings25_Read': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c:382:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] - 382 | if( tmp[0] < 33 || tmp[0] > 126 ) { - | ~~~^~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/factory-mappings.c:358:14: note: 'tmp' declared here - 358 | char tmp[2]; - | ^~~ -make -f tools/internal/ccextract/CMakeFiles/ccextract.dir/build.make tools/internal/ccextract/CMakeFiles/ccextract.dir/depend -[ 71%] Linking C executable ../../../bin/srf-load +[ 67%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-progress.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-progress.c.o -MF CMakeFiles/pacbio-load.dir/pl-progress.c.o.d -o CMakeFiles/pacbio-load.dir/pl-progress.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pl-progress.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-lock.3.0.9 vdb-lock.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-lock.3 vdb-lock +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/srf-load.dir/link.txt --verbose=1 make -f tools/internal/align-cache/CMakeFiles/align-cache.dir/build.make tools/internal/align-cache/CMakeFiles/align-cache.dir/build -[ 71%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_5.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/ccextract /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/ccextract /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/ccextract/CMakeFiles/ccextract.dir/DependInfo.cmake "--color=" -make -f tools/internal/copycat/CMakeFiles/copycat.dir/build.make tools/internal/copycat/CMakeFiles/copycat.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 71%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/file.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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-fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/file.c.o -MF CMakeFiles/cg-load.dir/file.c.o.d -o CMakeFiles/cg-load.dir/file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/file.c +[ 67%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/database-loader.cpp.o +[ 67%] Built target vdb-lock +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/database-loader.cpp.o -MF CMakeFiles/general-loader.dir/database-loader.cpp.o.d -o CMakeFiles/general-loader.dir/database-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/database-loader.cpp +make -f tools/internal/ccextract/CMakeFiles/ccextract.dir/build.make tools/internal/ccextract/CMakeFiles/ccextract.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat/CMakeFiles/copycat.dir/DependInfo.cmake "--color=" -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/srf-load.dir/pstring.c.o" "CMakeFiles/srf-load.dir/common-xml.c.o" "CMakeFiles/srf-load.dir/experiment-xml.c.o" "CMakeFiles/srf-load.dir/run-xml.c.o" "CMakeFiles/srf-load.dir/loader-file.c.o" "CMakeFiles/srf-load.dir/loader-fmt.c.o" "CMakeFiles/srf-load.dir/sra-writer.c.o" "CMakeFiles/srf-load.dir/loader.c.o" "CMakeFiles/srf-load.dir/srf.c.o" "CMakeFiles/srf-load.dir/srf-fmt.c.o" "CMakeFiles/srf-load.dir/writer-illumina.c.o" "CMakeFiles/srf-load.dir/ztr-illumina.c.o" "CMakeFiles/srf-load.dir/srf-illumina.c.o" "CMakeFiles/srf-load.dir/writer-absolid.c.o" "CMakeFiles/srf-load.dir/ztr-absolid.c.o" "CMakeFiles/srf-load.dir/ztr-huffman.c.o" "CMakeFiles/srf-load.dir/srf-absolid.c.o" -o ../../../bin/srf-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so -[ 71%] Building CXX object tools/internal/align-cache/CMakeFiles/align-cache.dir/align-cache.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/ccextract /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/ccextract /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/ccextract/CMakeFiles/ccextract.dir/DependInfo.cmake "--color=" +[ 67%] Building CXX object tools/internal/align-cache/CMakeFiles/align-cache.dir/align-cache.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/align-cache && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/align-cache\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/internal/align-cache/CMakeFiles/align-cache.dir/align-cache.cpp.o -MF CMakeFiles/align-cache.dir/align-cache.cpp.o.d -o CMakeFiles/align-cache.dir/align-cache.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/align-cache/align-cache.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/ccextract/CMakeFiles/ccextract.dir/build.make tools/internal/ccextract/CMakeFiles/ccextract.dir/build -[ 71%] Building CXX object tools/internal/align-cache/CMakeFiles/align-cache.dir/helper.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/align-cache && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/align-cache\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/internal/align-cache/CMakeFiles/align-cache.dir/helper.cpp.o -MF CMakeFiles/align-cache.dir/helper.cpp.o.d -o CMakeFiles/align-cache.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/align-cache/helper.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f pacbio-loadxml.3.0.9 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv pacbio-loadxml pacbio-loadxml.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-loadxml.3.0.9 pacbio-loadxml.3 +[ 67%] Building C object tools/internal/ccextract/CMakeFiles/ccextract.dir/ccextract.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-loadxml.3 pacbio-loadxml +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/ccextract && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ccextract\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/ccextract/CMakeFiles/ccextract.dir/ccextract.c.o -MF CMakeFiles/ccextract.dir/ccextract.c.o.d -o CMakeFiles/ccextract.dir/ccextract.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/ccextract/ccextract.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 67%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o +[ 67%] Linking C executable ../../../bin/vdb-unlock +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o -MF CMakeFiles/sratools.dir/json-parse.cpp.o.d -o CMakeFiles/sratools.dir/json-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/json-parse.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-unlock && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-unlock.dir/link.txt --verbose=1 +[ 67%] Built target pacbio-loadxml +make -f tools/internal/copycat/CMakeFiles/copycat.dir/build.make tools/internal/copycat/CMakeFiles/copycat.dir/depend +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o" -o ../../../bin/vdb-unlock /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat/CMakeFiles/copycat.dir/DependInfo.cmake "--color=" +[ 67%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o -MF CMakeFiles/sratools.dir/SDL-response.cpp.o.d -o CMakeFiles/sratools.dir/SDL-response.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/SDL-response.cpp +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/database-loader.cpp:699:90: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 699 | rc = KLoaderMeta_WriteWithVersion ( node, m_programName.c_str(), __DATE__, KAppVersion(), m_softwareName.c_str(), m_softwareVersion ); + | ^~~~~~~~ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/copycat/CMakeFiles/copycat.dir/build.make tools/internal/copycat/CMakeFiles/copycat.dir/build -[ 71%] Linking C executable ../../../bin/sra-sort-cg make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-sort-cg.dir/link.txt --verbose=1 +[ 67%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pacbio-load.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pacbio-load.c.o -MF CMakeFiles/pacbio-load.dir/pacbio-load.c.o.d -o CMakeFiles/pacbio-load.dir/pacbio-load.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pacbio-load.c +[ 67%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/copycat.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/copycat.c.o -MF CMakeFiles/copycat.dir/copycat.c.o.d -o CMakeFiles/copycat.dir/copycat.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/copycat.c +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp: In function 'void run(const char*, bool, const int32_t*, const int32_t*, const int8_t*, int)': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp:76:16: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] + 76 | delete gw; + | ^~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp:45:20: note: 'gw' was declared here + 45 | GeneralWriter *gw; + | ^~ +[ 67%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-absolid.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-absolid.c.o -MF CMakeFiles/srf-load.dir/srf-absolid.c.o.d -o CMakeFiles/srf-load.dir/srf-absolid.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/srf-absolid.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-unlock.3.0.9 +In file included from /usr/include/c++/14/ios:42, + from /usr/include/c++/14/ostream:40, + from /usr/include/c++/14/iostream:41, + from /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc/general-writer/general-writer.hpp:34, + from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:30: +In static member function 'static std::size_t std::char_traits::length(const char_type*)', + inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const _CharT*, const _Alloc&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:653:49, + inlined from 'void run(const char*, TestCaseType, const std::string*, int)' at /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:77:25: +/usr/include/c++/14/bits/char_traits.h:391:32: warning: 'db_schema' may be used uninitialized [-Wmaybe-uninitialized] + 391 | return __builtin_strlen(__s); + | ~~~~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp: In function 'void run(const char*, TestCaseType, const std::string*, int)': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:57:21: note: 'db_schema' was declared here + 57 | const char* db_schema; + | ^~~~~~~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:101:16: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] + 101 | delete gw; + | ^~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:54:20: note: 'gw' was declared here + 54 | GeneralWriter *gw; + | ^~ +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-unlock vdb-unlock.3.0.9 +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pacbio-load.c: In function 'pacbio_meta_entry': +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-unlock.3.0.9 vdb-unlock.3 +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pacbio-load.c:219:53: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 219 | rc = KLoaderMeta_Write( node, toolname, __DATE__, "PacBio HDF5", KAppVersion() ); + | ^~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-unlock.3 vdb-unlock +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 67%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_3.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_3.c.o -MF CMakeFiles/cg-load.dir/f1_3.c.o.d -o CMakeFiles/cg-load.dir/f1_3.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/f1_3.c +[ 67%] Built target vdb-unlock make -f tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/build.make tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/make-read-filter /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/make-read-filter /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/DependInfo.cmake "--color=" -[ 71%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/copycat.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/copycat.c.o -MF CMakeFiles/copycat.dir/copycat.c.o.d -o CMakeFiles/copycat.dir/copycat.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/copycat.c -[ 71%] Building C object tools/internal/ccextract/CMakeFiles/ccextract.dir/ccextract.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/ccextract && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ccextract\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/ccextract/CMakeFiles/ccextract.dir/ccextract.c.o -MF CMakeFiles/ccextract.dir/ccextract.c.o.d -o CMakeFiles/ccextract.dir/ccextract.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/ccextract/ccextract.c -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -Wl,-z,relro -Wl,-z,now "CMakeFiles/sra-sort-cg.dir/caps.c.o" "CMakeFiles/sra-sort-cg.dir/mem.c.o" "CMakeFiles/sra-sort-cg.dir/membank.c.o" "CMakeFiles/sra-sort-cg.dir/paged-membank.c.o" "CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o" "CMakeFiles/sra-sort-cg.dir/except.c.o" "CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o" "CMakeFiles/sra-sort-cg.dir/map-file.c.o" "CMakeFiles/sra-sort-cg.dir/col-pair.c.o" "CMakeFiles/sra-sort-cg.dir/row-set.c.o" "CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/meta-pair.c.o" "CMakeFiles/sra-sort-cg.dir/dir-pair.c.o" "CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o" "CMakeFiles/sra-sort-cg.dir/db-pair.c.o" "CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o" "CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o" "CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o" "CMakeFiles/sra-sort-cg.dir/buff-writer.c.o" "CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o" "CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o" "CMakeFiles/sra-sort-cg.dir/run.c.o" "CMakeFiles/sra-sort-cg.dir/sra-sort.c.o" "CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o" "CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o" "CMakeFiles/sra-sort-cg.dir/csra-pair.c.o" -o ../../../bin/sra-sort-cg /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lbz2 -llzma -[ 71%] Linking C executable ../../../bin/vdb-lock -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-lock && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-lock.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/build.make tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/build -[ 71%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccfileformat.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd 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CMakeFiles/copycat.dir/ccfileformat.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/ccfileformat.c -[ 72%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-file.c.o -[ 72%] Linking C executable ../../../bin/vdb-unlock -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time 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/usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -[ 72%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader-fmt.c -[ 72%] Building C object tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/make-read-filter.c.o +[ 67%] Building C object tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/make-read-filter.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/make-read-filter && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-unused-result -MD -MT tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/make-read-filter.c.o -MF CMakeFiles/make-read-filter.dir/make-read-filter.c.o.d -o CMakeFiles/make-read-filter.dir/make-read-filter.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/make-read-filter/make-read-filter.c -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o" -o ../../../bin/vdb-unlock /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -[ 72%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-regions.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/internal/align-cache/CMakeFiles/align-cache.dir/helper.cpp.o -MF CMakeFiles/align-cache.dir/helper.cpp.o.d -o CMakeFiles/align-cache.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/align-cache/helper.cpp +[ 67%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_5.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_5.c.o -MF CMakeFiles/cg-load.dir/f1_5.c.o.d -o CMakeFiles/cg-load.dir/f1_5.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/f1_5.c +[ 67%] Linking CXX executable ../../../../../test-bin/bio-end-makeinputs +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/bio-end-makeinputs.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o" -o ../../../../../test-bin/bio-end-makeinputs ../../../../../ilib/libgeneral-writer.a +[ 67%] Linking C executable ../../../bin/ccextract +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/ccextract && /usr/bin/cmake -E cmake_link_script CMakeFiles/ccextract.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/ccextract.dir/ccextract.c.o -o ../../../bin/ccextract /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libxml2.so +[ 67%] Linking C executable ../../../bin/pacbio-load +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-load.dir/link.txt --verbose=1 +[ 67%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_7.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_7.c.o -MF CMakeFiles/cg-load.dir/f1_7.c.o.d -o CMakeFiles/cg-load.dir/f1_7.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/f1_7.c +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o" "CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o" "CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o" "CMakeFiles/pacbio-load.dir/pl-context.c.o" "CMakeFiles/pacbio-load.dir/pl-tools.c.o" "CMakeFiles/pacbio-load.dir/pl-zmw.c.o" "CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o" "CMakeFiles/pacbio-load.dir/pl-sequence.c.o" "CMakeFiles/pacbio-load.dir/pl-consensus.c.o" "CMakeFiles/pacbio-load.dir/pl-passes.c.o" "CMakeFiles/pacbio-load.dir/pl-metrics.c.o" "CMakeFiles/pacbio-load.dir/pl-regions.c.o" "CMakeFiles/pacbio-load.dir/pl-progress.c.o" "CMakeFiles/pacbio-load.dir/pacbio-load.c.o" -o ../../../bin/pacbio-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +[ 67%] Linking C executable ../../../bin/srf-load +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/srf-load.dir/link.txt --verbose=1 +[ 67%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccfileformat.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccfileformat.c.o -MF CMakeFiles/copycat.dir/ccfileformat.c.o.d -o CMakeFiles/copycat.dir/ccfileformat.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/ccfileformat.c +[ 67%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/testsource.cpp.o +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/srf-load.dir/pstring.c.o" "CMakeFiles/srf-load.dir/common-xml.c.o" "CMakeFiles/srf-load.dir/experiment-xml.c.o" "CMakeFiles/srf-load.dir/run-xml.c.o" "CMakeFiles/srf-load.dir/loader-file.c.o" "CMakeFiles/srf-load.dir/loader-fmt.c.o" "CMakeFiles/srf-load.dir/sra-writer.c.o" "CMakeFiles/srf-load.dir/loader.c.o" "CMakeFiles/srf-load.dir/srf.c.o" "CMakeFiles/srf-load.dir/srf-fmt.c.o" "CMakeFiles/srf-load.dir/writer-illumina.c.o" "CMakeFiles/srf-load.dir/ztr-illumina.c.o" "CMakeFiles/srf-load.dir/srf-illumina.c.o" "CMakeFiles/srf-load.dir/writer-absolid.c.o" "CMakeFiles/srf-load.dir/ztr-absolid.c.o" "CMakeFiles/srf-load.dir/ztr-huffman.c.o" "CMakeFiles/srf-load.dir/srf-absolid.c.o" -o ../../../bin/srf-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/testsource.cpp.o -MF CMakeFiles/makeinputs.dir/testsource.cpp.o.d -o CMakeFiles/makeinputs.dir/testsource.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/testsource.cpp +[ 67%] Built target bio-end-makeinputs make -f tools/internal/md5cp/CMakeFiles/md5cp.dir/build.make tools/internal/md5cp/CMakeFiles/md5cp.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/md5cp /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/md5cp /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/md5cp/CMakeFiles/md5cp.dir/DependInfo.cmake "--color=" -[ 72%] Linking C executable ../../../bin/abi-load -[ 72%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-progress.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/abi-load.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time 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"CMakeFiles/abi-load.dir/run-xml.c.o" "CMakeFiles/abi-load.dir/loader-file.c.o" "CMakeFiles/abi-load.dir/loader-fmt.c.o" "CMakeFiles/abi-load.dir/sra-writer.c.o" "CMakeFiles/abi-load.dir/loader.c.o" "CMakeFiles/abi-load.dir/writer-absolid.c.o" "CMakeFiles/abi-load.dir/absolid-fmt.c.o" -o ../../../bin/abi-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so -[ 72%] Linking C executable ../../../bin/helicos-load -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/helicos-load.dir/link.txt --verbose=1 +[ 67%] Linking CXX executable ../../../../../test-bin/idx-text-makeinputs +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script 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-Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_0.c.o -MF CMakeFiles/cg-load.dir/f2_0.c.o.d -o CMakeFiles/cg-load.dir/f2_0.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/f2_0.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-lock.3.0.9 vdb-lock.3 -[ 72%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pacbio-load.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pacbio-load.c.o -MF CMakeFiles/pacbio-load.dir/pacbio-load.c.o.d -o CMakeFiles/pacbio-load.dir/pacbio-load.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/pacbio-load/pacbio-load.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f srf-load.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-lock.3 vdb-lock -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-sort-cg.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv srf-load srf-load.3.0.9 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o" -o ../../../../../test-bin/idx-text-makeinputs ../../../../../ilib/libgeneral-writer.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f ccextract.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv ccextract ccextract.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ccextract.3.0.9 ccextract.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ccextract.3 ccextract +[ 68%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o +[ 68%] Building C object tools/internal/md5cp/CMakeFiles/md5cp.dir/md5cp.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/md5cp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/md5cp/CMakeFiles/md5cp.dir/md5cp.c.o -MF CMakeFiles/md5cp.dir/md5cp.c.o.d -o CMakeFiles/md5cp.dir/md5cp.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/md5cp/md5cp.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o -MF CMakeFiles/sratools.dir/tool-args.cpp.o.d -o CMakeFiles/sratools.dir/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/tool-args.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sra-sort-cg sra-sort-cg.3.0.9 -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/helicos-load.dir/pstring.c.o" "CMakeFiles/helicos-load.dir/common-xml.c.o" "CMakeFiles/helicos-load.dir/experiment-xml.c.o" "CMakeFiles/helicos-load.dir/run-xml.c.o" "CMakeFiles/helicos-load.dir/loader-file.c.o" "CMakeFiles/helicos-load.dir/loader-fmt.c.o" "CMakeFiles/helicos-load.dir/sra-writer.c.o" "CMakeFiles/helicos-load.dir/loader.c.o" "CMakeFiles/helicos-load.dir/writer-helicos.c.o" "CMakeFiles/helicos-load.dir/helicos-fmt.c.o" -o ../../../bin/helicos-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so -[ 73%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cccat.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cccat.c.o -MF CMakeFiles/copycat.dir/cccat.c.o.d -o CMakeFiles/copycat.dir/cccat.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/cccat.c +[ 68%] Built target ccextract make -f tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/build.make tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/depend -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s srf-load.3.0.9 srf-load.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-sort-cg.3.0.9 sra-sort-cg.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-sort-cg.3 sra-sort-cg make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/meta-cmp /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-cmp /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s srf-load.3 srf-load -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-unlock.3.0.9 -[ 73%] Building C object tools/internal/md5cp/CMakeFiles/md5cp.dir/md5cp.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/md5cp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/md5cp/CMakeFiles/md5cp.dir/md5cp.c.o -MF 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'/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 74%] Building C object tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/meta-cmp.c.o -make -f tools/internal/meta-copy/CMakeFiles/meta-copy.dir/build.make tools/internal/meta-copy/CMakeFiles/meta-copy.dir/build +[ 69%] Building C object tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/meta-cmp.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-cmp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/meta-cmp\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o -MF CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o.d -o CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/sra-writer.c -[ 74%] Built target vdb-unlock -make -f tools/internal/meta-repair/CMakeFiles/meta-repair.dir/build.make tools/internal/meta-repair/CMakeFiles/meta-repair.dir/depend -[ 74%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/file-version-factory.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/file-version-factory.c.o -MF CMakeFiles/cg-load.dir/file-version-factory.c.o.d -o CMakeFiles/cg-load.dir/file-version-factory.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/file-version-factory.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/meta-repair /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-repair /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-repair/CMakeFiles/meta-repair.dir/DependInfo.cmake "--color=" -[ 74%] Building C object tools/internal/meta-copy/CMakeFiles/meta-copy.dir/meta-copy.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/meta-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/meta-copy/CMakeFiles/meta-copy.dir/meta-copy.c.o -MF CMakeFiles/meta-copy.dir/meta-copy.c.o.d -o CMakeFiles/meta-copy.dir/meta-copy.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/meta-copy/meta-copy.c -[ 74%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/testsource.cpp: In constructor 'TestSource::Buffer::Buffer(const std::string&, uint32_t, uint32_t, bool)': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/testsource.cpp:52:13: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 8 equals destination size [-Wstringop-truncation] - 52 | strncpy ( m_header . dad . signature, p_signature . c_str(), sizeof m_header . dad . signature ); - | ^ +[ 69%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_2.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_2.c.o -MF CMakeFiles/cg-load.dir/f2_2.c.o.d -o CMakeFiles/cg-load.dir/f2_2.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/f2_2.c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/ccfileformat.c: In function 'CCFileFormatIsFastq': /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/ccfileformat.c:275:27: warning: 'seq_len' may be used uninitialized [-Wmaybe-uninitialized] 275 | if(quality_values_len != seq_len) @@ -4853,810 +4781,942 @@ /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/ccfileformat.c:193:12: note: 'seq_len' was declared here 193 | size_t seq_len,quality_values_len,seq_id_len; | ^~~~~~~ -[ 74%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/formats.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/formats.c.o -MF CMakeFiles/cg-load.dir/formats.c.o.d -o CMakeFiles/cg-load.dir/formats.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/formats.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f srf-load.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv srf-load srf-load.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s srf-load.3.0.9 srf-load.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s srf-load.3 srf-load +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f pacbio-load.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv pacbio-load pacbio-load.3.0.9 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-load.3.0.9 pacbio-load.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-load.3 pacbio-load +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 69%] Built target srf-load +make -f tools/internal/meta-copy/CMakeFiles/meta-copy.dir/build.make tools/internal/meta-copy/CMakeFiles/meta-copy.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/meta-copy /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-copy /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-copy/CMakeFiles/meta-copy.dir/DependInfo.cmake "--color=" +[ 69%] Built target pacbio-load +make -f tools/internal/meta-repair/CMakeFiles/meta-repair.dir/build.make tools/internal/meta-repair/CMakeFiles/meta-repair.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/meta-repair /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-repair /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-repair/CMakeFiles/meta-repair.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/internal/meta-copy/CMakeFiles/meta-copy.dir/build.make tools/internal/meta-copy/CMakeFiles/meta-copy.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/meta-repair/CMakeFiles/meta-repair.dir/build.make tools/internal/meta-repair/CMakeFiles/meta-repair.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 69%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_4.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_4.c.o -MF CMakeFiles/cg-load.dir/f2_4.c.o.d -o CMakeFiles/cg-load.dir/f2_4.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/f2_4.c +[ 69%] Building C object tools/internal/meta-copy/CMakeFiles/meta-copy.dir/meta-copy.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/meta-copy\" -Dx86_64 -I/usr/include/ncbi-vdb 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tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/depend -[ 74%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-algn.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-algn.c.o -MF CMakeFiles/cg-load.dir/writer-algn.c.o.d -o CMakeFiles/cg-load.dir/writer-algn.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/writer-algn.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/DependInfo.cmake "--color=" -[ 74%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -MF CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o.d -o CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/pacbio-fmt.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f abi-load.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv abi-load abi-load.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s abi-load.3.0.9 abi-load.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s abi-load.3 abi-load -make -f tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/depend -[ 74%] Building C object tools/internal/meta-repair/CMakeFiles/meta-repair.dir/meta-repair.c.o -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/DependInfo.cmake "--color=" +[ 69%] Building C object tools/internal/meta-repair/CMakeFiles/meta-repair.dir/meta-repair.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-repair && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/meta-repair\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/meta-repair/CMakeFiles/meta-repair.dir/meta-repair.c.o -MF CMakeFiles/meta-repair.dir/meta-repair.c.o.d -o CMakeFiles/meta-repair.dir/meta-repair.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/meta-repair/meta-repair.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f helicos-load.3.0.9 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv helicos-load helicos-load.3.0.9 +[ 70%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cccat.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/build +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cccat.c.o -MF CMakeFiles/copycat.dir/cccat.c.o.d -o CMakeFiles/copycat.dir/cccat.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/cccat.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s helicos-load.3.0.9 helicos-load.3 +[ 71%] Building C object tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/rd-filter-redact\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o -MF CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o.d -o CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/rd-filter-redact/test-read-write-cursor.c +[ 71%] Linking C executable ../../../bin/md5cp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/md5cp && /usr/bin/cmake -E cmake_link_script CMakeFiles/md5cp.dir/link.txt --verbose=1 +[ 71%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_5.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_5.c.o -MF CMakeFiles/cg-load.dir/f2_5.c.o.d -o CMakeFiles/cg-load.dir/f2_5.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/f2_5.c +[ 71%] Linking C executable ../../../bin/meta-cmp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-cmp && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-cmp.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/md5cp.dir/md5cp.c.o -o ../../../bin/md5cp /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/meta-cmp.dir/meta-cmp.c.o" -o ../../../bin/meta-cmp /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 71%] Linking C executable ../../../bin/make-read-filter +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/make-read-filter && /usr/bin/cmake -E cmake_link_script CMakeFiles/make-read-filter.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/make-read-filter.dir/make-read-filter.c.o" -o ../../../bin/make-read-filter /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f md5cp.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv md5cp md5cp.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s md5cp.3.0.9 md5cp.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s md5cp.3 md5cp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 71%] Linking C executable ../../../bin/meta-copy +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-copy && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-copy.dir/link.txt --verbose=1 +[ 71%] Built target md5cp +make -f tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f meta-cmp.3.0.9 +[ 71%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/file.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/file.c.o -MF CMakeFiles/cg-load.dir/file.c.o.d -o CMakeFiles/cg-load.dir/file.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/file.c +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/meta-copy.dir/meta-copy.c.o" -o ../../../bin/meta-copy /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv meta-cmp meta-cmp.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-cmp.3.0.9 meta-cmp.3 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s helicos-load.3 helicos-load make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-cmp.3 meta-cmp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 74%] Linking C executable ../../../bin/ccextract -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/ccextract && /usr/bin/cmake -E cmake_link_script CMakeFiles/ccextract.dir/link.txt --verbose=1 -[ 74%] Built target abi-load -[ 75%] Building C object tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/rd-filter-redact\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o -MF CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o.d -o CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/rd-filter-redact/test-read-write-cursor.c -[ 75%] Building C object tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f make-read-filter.3.0.9 +[ 72%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/main.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/main.cpp.o -MF CMakeFiles/general-loader.dir/main.cpp.o.d -o CMakeFiles/general-loader.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/main.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv make-read-filter make-read-filter.3.0.9 +[ 72%] Building C object tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/rd-filter-redact\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o -MF CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o.d -o CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/rd-filter-redact/read-filter-redact.c -[ 75%] Built target helicos-load -[ 75%] Linking CXX executable ../../../../test-bin/test-gw-dumper +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s make-read-filter.3.0.9 make-read-filter.3 +[ 72%] Built target meta-cmp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s make-read-filter.3 make-read-filter make -f tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/build.make tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/depend -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/ccextract.dir/ccextract.c.o -o ../../../bin/ccextract /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libxml2.so make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-gw-dumper.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-gw-dumper.dir/test-gw-dumper.cpp.o" -o ../../../../test-bin/test-gw-dumper ../../../../ilib/libgeneral-writer.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 72%] Built target make-read-filter make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/build.make tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/build +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f meta-copy.3.0.9 +[ 72%] Linking C executable ../../../bin/test-read-write-cursor make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 75%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctar.c.o -[ 75%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccsra.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cctar.c.o -MF CMakeFiles/copycat.dir/cctar.c.o.d -o CMakeFiles/copycat.dir/cctar.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/cctar.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccsra.c.o -MF CMakeFiles/copycat.dir/ccsra.c.o.d -o CMakeFiles/copycat.dir/ccsra.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/ccsra.c -[ 75%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccsubchunk.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 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-DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/context.c.o -MF CMakeFiles/vdb-copy.dir/context.c.o.d -o CMakeFiles/vdb-copy.dir/context.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/context.c -[ 75%] Linking C executable ../../../bin/meta-copy -cd 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccfile.c.o -MF CMakeFiles/copycat.dir/ccfile.c.o.d -o CMakeFiles/copycat.dir/ccfile.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/ccfile.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg 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/usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv meta-copy meta-copy.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-copy.3.0.9 meta-copy.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-copy.3 meta-copy +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o" -o ../../../bin/test-read-write-cursor /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +[ 72%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/context.c.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/context.c.o -MF CMakeFiles/vdb-copy.dir/context.c.o.d -o CMakeFiles/vdb-copy.dir/context.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/context.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/build.make tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 75%] Linking C executable ../../../bin/md5cp -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/meta-cmp.dir/meta-cmp.c.o" -o ../../../bin/meta-cmp /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/md5cp && /usr/bin/cmake -E cmake_link_script CMakeFiles/md5cp.dir/link.txt --verbose=1 -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp: In function 'void run(const char*, bool, const int32_t*, const int32_t*, const int8_t*, int)': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp:76:16: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] - 76 | delete gw; - | ^~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp:45:20: note: 'gw' was declared here - 45 | GeneralWriter *gw; - | ^~ -[ 75%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/namelist_tools.c.o +[ 72%] Built 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'/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/internal/check-redact/CMakeFiles/check-redact.dir/build.make tools/internal/check-redact/CMakeFiles/check-redact.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/rd-filter-redact/read-filter-redact.c: In function 'enter_date_name_vers': /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/rd-filter-redact/read-filter-redact.c:755:59: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 755 | rc = KMDataNodeWriteAttr ( node, "build", __DATE__ ); | ^~~~~~~~ -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/md5cp.dir/md5cp.c.o -o ../../../bin/md5cp /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 75%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/helper.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/helper.c.o -MF CMakeFiles/vdb-copy.dir/helper.c.o.d -o CMakeFiles/vdb-copy.dir/helper.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/helper.c -[ 75%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/fileformat.c.o -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/testsource.cpp: In constructor 'TestSource::Buffer::Buffer(const std::string&, uint32_t, uint32_t, bool)': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/testsource.cpp:52:13: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 8 equals destination size [-Wstringop-truncation] - 52 | strncpy ( m_header . dad . signature, p_signature . c_str(), sizeof m_header . dad . signature ); - | ^ -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/fileformat.c.o -MF CMakeFiles/copycat.dir/kff/fileformat.c.o.d -o CMakeFiles/copycat.dir/kff/fileformat.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/kff/fileformat.c -[ 75%] Linking C executable ../../../bin/illumina-load -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/illumina-load.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f meta-copy.3.0.9 -[ 75%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffext.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv meta-copy meta-copy.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffext.c.o -MF CMakeFiles/copycat.dir/kff/ffext.c.o.d -o CMakeFiles/copycat.dir/kff/ffext.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/kff/ffext.c -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/illumina-load.dir/pstring.c.o" "CMakeFiles/illumina-load.dir/common-xml.c.o" "CMakeFiles/illumina-load.dir/experiment-xml.c.o" "CMakeFiles/illumina-load.dir/run-xml.c.o" "CMakeFiles/illumina-load.dir/loader-file.c.o" "CMakeFiles/illumina-load.dir/loader-fmt.c.o" "CMakeFiles/illumina-load.dir/sra-writer.c.o" "CMakeFiles/illumina-load.dir/loader.c.o" "CMakeFiles/illumina-load.dir/writer-illumina.c.o" "CMakeFiles/illumina-load.dir/illumina-fmt.c.o" -o ../../../bin/illumina-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-copy.3.0.9 meta-copy.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f meta-cmp.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv meta-cmp meta-cmp.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-copy.3 meta-copy -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f ccextract.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-cmp.3.0.9 meta-cmp.3 -[ 76%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffkey.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv ccextract ccextract.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffkey.c.o -MF CMakeFiles/copycat.dir/kff/ffkey.c.o.d -o CMakeFiles/copycat.dir/kff/ffkey.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/kff/ffkey.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-cmp.3 meta-cmp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ccextract.3.0.9 ccextract.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ccextract.3 ccextract -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 76%] Linking C executable ../../../bin/test-read-write-cursor -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-read-write-cursor.dir/link.txt --verbose=1 -[ 76%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o -[ 76%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/coldefs.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 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-DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o -MF CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o.d -o CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/writer-evidence-dnbs.c -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o" -o ../../../bin/test-read-write-cursor /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -[ 76%] Built target meta-copy -[ 76%] Built target ccextract -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 77%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o -MF CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o.d -o CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/writer-evidence-intervals.c -[ 78%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -MF CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o.d -o CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-diff/vdb-diff-context.c -In file included from /usr/include/c++/14/ios:42, - from /usr/include/c++/14/ostream:40, - from /usr/include/c++/14/iostream:41, - from /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc/general-writer/general-writer.hpp:34, - from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:30: -In static member function 'static std::size_t std::char_traits::length(const char_type*)', - inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const _CharT*, const _Alloc&) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:653:49, - inlined from 'void run(const char*, TestCaseType, const std::string*, int)' at /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:77:25: -/usr/include/c++/14/bits/char_traits.h:391:32: warning: 'db_schema' may be used uninitialized [-Wmaybe-uninitialized] - 391 | return __builtin_strlen(__s); - | ~~~~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp: In function 'void run(const char*, TestCaseType, const std::string*, int)': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:57:21: note: 'db_schema' was declared here - 57 | const char* db_schema; - | ^~~~~~~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:101:16: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] - 101 | delete gw; - | ^~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:54:20: note: 'gw' was declared here - 54 | GeneralWriter *gw; - | ^~ -[ 78%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/cmn.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/cmn.c.o -MF CMakeFiles/vdb-diff.dir/cmn.c.o.d -o CMakeFiles/vdb-diff.dir/cmn.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-diff/cmn.c -[ 78%] Built target meta-cmp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f md5cp.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv md5cp md5cp.3.0.9 -[ 78%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/coldefs.c.o -[ 78%] Built target test-gw-dumper -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/coldefs.c.o -MF CMakeFiles/vdb-copy.dir/coldefs.c.o.d -o CMakeFiles/vdb-copy.dir/coldefs.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/coldefs.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f test-read-write-cursor.3.0.9 +[ 72%] Building C object tools/internal/check-redact/CMakeFiles/check-redact.dir/check-redact.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/check-redact && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/check-redact\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/check-redact/CMakeFiles/check-redact.dir/check-redact.c.o -MF CMakeFiles/check-redact.dir/check-redact.c.o.d -o CMakeFiles/check-redact.dir/check-redact.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/check-redact/check-redact.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv test-read-write-cursor test-read-write-cursor.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s md5cp.3.0.9 md5cp.3 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-read-write-cursor.3.0.9 test-read-write-cursor.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s md5cp.3 md5cp cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-read-write-cursor.3 test-read-write-cursor -[ 78%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/row_by_row.c.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/row_by_row.c.o -MF CMakeFiles/vdb-diff.dir/row_by_row.c.o.d -o CMakeFiles/vdb-diff.dir/row_by_row.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-diff/row_by_row.c -[ 78%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/col_by_col.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/col_by_col.c.o -MF CMakeFiles/vdb-diff.dir/col_by_col.c.o.d -o CMakeFiles/vdb-diff.dir/col_by_col.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-diff/col_by_col.c -[ 78%] Linking C executable ../../../bin/pacbio-load -[ 78%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffmagic.c.o -make -f tools/internal/check-redact/CMakeFiles/check-redact.dir/build.make tools/internal/check-redact/CMakeFiles/check-redact.dir/depend -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-load.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffmagic.c.o -MF CMakeFiles/copycat.dir/kff/ffmagic.c.o.d -o CMakeFiles/copycat.dir/kff/ffmagic.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/kff/ffmagic.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/check-redact /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/check-redact /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/check-redact/CMakeFiles/check-redact.dir/DependInfo.cmake "--color=" -[ 78%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff.c.o -MF CMakeFiles/vdb-diff.dir/vdb-diff.c.o.d -o CMakeFiles/vdb-diff.dir/vdb-diff.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-diff/vdb-diff.c -[ 78%] Built target test-read-write-cursor -[ 78%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-seq.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-seq.c.o -MF CMakeFiles/cg-load.dir/writer-seq.c.o.d -o CMakeFiles/cg-load.dir/writer-seq.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/writer-seq.c -[ 78%] Built target md5cp -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o" "CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o" "CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o" "CMakeFiles/pacbio-load.dir/pl-context.c.o" "CMakeFiles/pacbio-load.dir/pl-tools.c.o" "CMakeFiles/pacbio-load.dir/pl-zmw.c.o" "CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o" "CMakeFiles/pacbio-load.dir/pl-sequence.c.o" "CMakeFiles/pacbio-load.dir/pl-consensus.c.o" "CMakeFiles/pacbio-load.dir/pl-passes.c.o" "CMakeFiles/pacbio-load.dir/pl-metrics.c.o" "CMakeFiles/pacbio-load.dir/pl-regions.c.o" "CMakeFiles/pacbio-load.dir/pl-progress.c.o" "CMakeFiles/pacbio-load.dir/pacbio-load.c.o" -o ../../../bin/pacbio-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +[ 72%] Built target test-read-write-cursor make -f tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/build.make tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/depend -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/crc32sum /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/crc32sum /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/DependInfo.cmake "--color=" -make -f tools/internal/check-redact/CMakeFiles/check-redact.dir/build.make tools/internal/check-redact/CMakeFiles/check-redact.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 78%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/get_platform.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/get_platform.c.o -MF CMakeFiles/vdb-copy.dir/get_platform.c.o.d -o CMakeFiles/vdb-copy.dir/get_platform.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/get_platform.c -[ 78%] Linking CXX executable ../../../../../test-bin/bio-end-makeinputs -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/bio-end-makeinputs.dir/link.txt --verbose=1 -[ 78%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/copy_meta.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/build.make tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/build -[ 78%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/type_matcher.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/type_matcher.c.o -MF CMakeFiles/vdb-copy.dir/type_matcher.c.o.d -o CMakeFiles/vdb-copy.dir/type_matcher.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/type_matcher.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/copy_meta.c.o -MF CMakeFiles/vdb-copy.dir/copy_meta.c.o.d -o CMakeFiles/vdb-copy.dir/copy_meta.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/copy_meta.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f illumina-load.3.0.9 -[ 78%] Building C object tools/internal/check-redact/CMakeFiles/check-redact.dir/check-redact.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv illumina-load illumina-load.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/check-redact && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/check-redact\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/check-redact/CMakeFiles/check-redact.dir/check-redact.c.o -MF CMakeFiles/check-redact.dir/check-redact.c.o.d -o CMakeFiles/check-redact.dir/check-redact.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/check-redact/check-redact.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o" -o ../../../../../test-bin/bio-end-makeinputs ../../../../../ilib/libgeneral-writer.a +[ 72%] Building C object tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/crc32sum.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/crc32sum && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/file-version-factory.c.o -MF CMakeFiles/cg-load.dir/file-version-factory.c.o.d -o CMakeFiles/cg-load.dir/file-version-factory.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/file-version-factory.c +[ 72%] Linking CXX executable ../../../bin/align-cache +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/align-cache && /usr/bin/cmake -E cmake_link_script CMakeFiles/align-cache.dir/link.txt --verbose=1 +[ 72%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/coldefs.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/coldefs.c.o -MF CMakeFiles/vdb-diff.dir/coldefs.c.o.d -o CMakeFiles/vdb-diff.dir/coldefs.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-diff/coldefs.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/align-cache.dir/align-cache.cpp.o" "CMakeFiles/align-cache.dir/helper.cpp.o" -o ../../../bin/align-cache /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/testsource.cpp: In constructor 'TestSource::Buffer::Buffer(const std::string&, uint32_t, uint32_t, bool)': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/testsource.cpp:52:13: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 8 equals destination size [-Wstringop-truncation] + 52 | strncpy ( m_header . dad . signature, p_signature . c_str(), sizeof m_header . dad . signature ); + | ^ +[ 72%] Linking C executable ../../../bin/crc32sum +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/crc32sum && /usr/bin/cmake -E cmake_link_script CMakeFiles/crc32sum.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/crc32sum.dir/crc32sum.c.o -o ../../../bin/crc32sum /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 72%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/formats.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/formats.c.o -MF CMakeFiles/cg-load.dir/formats.c.o.d -o CMakeFiles/cg-load.dir/formats.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/formats.c +[ 72%] Linking C executable ../../../bin/check-redact +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/check-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/check-redact.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/check-redact.dir/check-redact.c.o" -o ../../../bin/check-redact /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 72%] Linking CXX executable ../../../../../test-bin/idx-text-checklookup +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/idx-text-checklookup.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o" -o ../../../../../test-bin/idx-text-checklookup /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 73%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -MF CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o.d -o CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-diff/vdb-diff-context.c +[ 73%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-algn.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f crc32sum.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-algn.c.o -MF CMakeFiles/cg-load.dir/writer-algn.c.o.d -o CMakeFiles/cg-load.dir/writer-algn.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/writer-algn.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv crc32sum crc32sum.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s crc32sum.3.0.9 crc32sum.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s crc32sum.3 crc32sum +[ 73%] Linking C executable ../../../bin/meta-repair +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-repair && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-repair.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 73%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctree.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cctree.c.o -MF CMakeFiles/copycat.dir/cctree.c.o.d -o CMakeFiles/copycat.dir/cctree.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/cctree.c +[ 73%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o -MF CMakeFiles/sratools.dir/build-version.cpp.o.d -o CMakeFiles/sratools.dir/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/build-version.cpp +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/meta-repair.dir/meta-repair.c.o" -o ../../../bin/meta-repair /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 73%] Built target crc32sum make -f tools/test-tools/test-download/CMakeFiles/test-download.dir/build.make tools/test-tools/test-download/CMakeFiles/test-download.dir/depend -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s illumina-load.3.0.9 illumina-load.3 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/test-download /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/test-download /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/test-download/CMakeFiles/test-download.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s illumina-load.3 illumina-load +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f check-redact.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv check-redact check-redact.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s check-redact.3.0.9 check-redact.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s check-redact.3 check-redact +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/test-tools/test-download/CMakeFiles/test-download.dir/build.make tools/test-tools/test-download/CMakeFiles/test-download.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 73%] Built target check-redact make -f tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/build.make tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/kdb-index /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/kdb-index /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/DependInfo.cmake "--color=" +[ 73%] Building C object tools/test-tools/test-download/CMakeFiles/test-download.dir/test-download.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/test-download && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/test-download/CMakeFiles/test-download.dir/test-download.c.o -MF CMakeFiles/test-download.dir/test-download.c.o.d -o CMakeFiles/test-download.dir/test-download.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/test-download/test-download.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 78%] Building C object tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/crc32sum.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/crc32sum && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/crc32sum.c.o -MF CMakeFiles/crc32sum.dir/crc32sum.c.o.d -o CMakeFiles/crc32sum.dir/crc32sum.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/crc32sum/crc32sum.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/build.make tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f meta-repair.3.0.9 +[ 73%] Built target idx-text-checklookup +[ 73%] Linking C executable ../../../bin/read-filter-redact +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/read-filter-redact.dir/link.txt --verbose=1 make -f tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/build.make tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/pacbio-correct /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pacbio-correct /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f align-cache.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv meta-repair meta-repair.3.0.9 +[ 73%] Building C object tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/kdb-index.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv align-cache align-cache.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/kdb-index && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/kdb-index.c.o -MF CMakeFiles/kdb-index.dir/kdb-index.c.o.d -o CMakeFiles/kdb-index.dir/kdb-index.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/kdb-index/kdb-index.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-repair.3.0.9 meta-repair.3 +[ 73%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/cmn.c.o +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o" -o ../../../bin/read-filter-redact /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/cmn.c.o -MF CMakeFiles/vdb-diff.dir/cmn.c.o.d -o CMakeFiles/vdb-diff.dir/cmn.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-diff/cmn.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s align-cache.3.0.9 align-cache.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-repair.3 meta-repair +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s align-cache.3 align-cache +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/build.make tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/build +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 73%] Building C object tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o +[ 73%] Built target align-cache +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pacbio-correct && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o -MF CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o.d -o CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/pacbio-correct/pacbio-correct.c make -f tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/build.make tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/depend -[ 79%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/redactval.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/redactval.c.o -MF CMakeFiles/vdb-copy.dir/redactval.c.o.d -o CMakeFiles/vdb-copy.dir/redactval.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/redactval.c +[ 73%] Built target meta-repair make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/schema-replace /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/schema-replace /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/DependInfo.cmake "--color=" -[ 79%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/config_values.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/config_values.c.o -MF CMakeFiles/vdb-copy.dir/config_values.c.o.d -o CMakeFiles/vdb-copy.dir/config_values.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/config_values.c +[ 74%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o -MF CMakeFiles/sratools.dir/file-path.posix.cpp.o.d -o CMakeFiles/sratools.dir/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/file-path.posix.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/test-tools/test-download/CMakeFiles/test-download.dir/build.make tools/test-tools/test-download/CMakeFiles/test-download.dir/build +make -f tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/build.make tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f read-filter-redact.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv read-filter-redact read-filter-redact.3.0.9 +[ 74%] Building C object tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/schema-replace.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s read-filter-redact.3.0.9 read-filter-redact.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/schema-replace && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/schema-replace.c.o -MF CMakeFiles/schema-replace.dir/schema-replace.c.o.d -o CMakeFiles/schema-replace.dir/schema-replace.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/schema-replace/schema-replace.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s read-filter-redact.3 read-filter-redact make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/build.make tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/build -[ 79%] Built target illumina-load -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/build.make tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/copy_meta.c: In function 'enter_date_name_vers': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/copy_meta.c:301:59: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 301 | rc = KMDataNodeWriteAttr ( node, "build", __DATE__ ); - | ^~~~~~~~ +[ 74%] Built target read-filter-redact +make -f tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build.make tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/build.make tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/build -[ 79%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/vdb-copy.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/sortreadtest /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sortreadtest /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/DependInfo.cmake "--color=" +[ 74%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/row_by_row.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/row_by_row.c.o -MF CMakeFiles/vdb-diff.dir/row_by_row.c.o.d -o CMakeFiles/vdb-diff.dir/row_by_row.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-diff/row_by_row.c +[ 74%] Linking C executable ../../../bin/pacbio-correct +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build.make tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pacbio-correct && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-correct.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/vdb-copy.c.o -MF CMakeFiles/vdb-copy.dir/vdb-copy.c.o.d -o CMakeFiles/vdb-copy.dir/vdb-copy.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/vdb-copy.c -make -f tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build.make tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/depend +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o" -o ../../../bin/pacbio-correct /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +[ 74%] Building C object tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/sortreadtest.c.o +[ 74%] Linking C executable ../../../bin/kdb-index +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sortreadtest && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/sortreadtest.c.o -MF CMakeFiles/sortreadtest.dir/sortreadtest.c.o.d -o CMakeFiles/sortreadtest.dir/sortreadtest.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/sortreadtest/sortreadtest.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/kdb-index && /usr/bin/cmake -E cmake_link_script CMakeFiles/kdb-index.dir/link.txt --verbose=1 +[ 74%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctree-dump.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cctree-dump.c.o -MF CMakeFiles/copycat.dir/cctree-dump.c.o.d -o CMakeFiles/copycat.dir/cctree-dump.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/cctree-dump.c +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/kdb-index.dir/kdb-index.c.o" -o ../../../bin/kdb-index /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 74%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/coldefs.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/coldefs.c.o -MF CMakeFiles/vdb-copy.dir/coldefs.c.o.d -o CMakeFiles/vdb-copy.dir/coldefs.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/coldefs.c +[ 74%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o -MF CMakeFiles/sratools.dir/proc.posix.cpp.o.d -o CMakeFiles/sratools.dir/proc.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/proc.posix.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f pacbio-correct.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv pacbio-correct pacbio-correct.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-correct.3.0.9 pacbio-correct.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-correct.3 pacbio-correct +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 74%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/col_by_col.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/col_by_col.c.o -MF CMakeFiles/vdb-diff.dir/col_by_col.c.o.d -o CMakeFiles/vdb-diff.dir/col_by_col.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-diff/col_by_col.c +[ 74%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctar.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cctar.c.o -MF CMakeFiles/copycat.dir/cctar.c.o.d -o CMakeFiles/copycat.dir/cctar.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/cctar.c +[ 74%] Built target pacbio-correct make -f tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/build.make tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/rowwritetest /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rowwritetest /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f kdb-index.3.0.9 +[ 74%] Linking C executable ../../../bin/schema-replace +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/schema-replace && /usr/bin/cmake -E cmake_link_script CMakeFiles/schema-replace.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv kdb-index kdb-index.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kdb-index.3.0.9 kdb-index.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kdb-index.3 kdb-index +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/schema-replace.dir/schema-replace.c.o" -o ../../../bin/schema-replace /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +make -f tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/build.make tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/build +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/sortreadtest /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sortreadtest /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 74%] Linking C executable ../../../bin/test-download +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/test-download && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-download.dir/link.txt --verbose=1 +[ 74%] Building C object tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/rowwritetest.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rowwritetest && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/rowwritetest.c.o -MF CMakeFiles/rowwritetest.dir/rowwritetest.c.o.d -o CMakeFiles/rowwritetest.dir/rowwritetest.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/rowwritetest/rowwritetest.c +[ 74%] Built target kdb-index make -f tools/test-tools/samview-util/CMakeFiles/samview-util.dir/build.make tools/test-tools/samview-util/CMakeFiles/samview-util.dir/depend -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/rowwritetest /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rowwritetest /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/DependInfo.cmake "--color=" -make -f tools/test-tools/testld/CMakeFiles/testld.dir/build.make tools/test-tools/testld/CMakeFiles/testld.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/samview-util /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/samview-util /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/samview-util/CMakeFiles/samview-util.dir/DependInfo.cmake "--color=" -[ 79%] Building C object tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/kdb-index.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/kdb-index && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/kdb-index.c.o -MF CMakeFiles/kdb-index.dir/kdb-index.c.o.d -o CMakeFiles/kdb-index.dir/kdb-index.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/kdb-index/kdb-index.c -[ 79%] Building C object tools/test-tools/test-download/CMakeFiles/test-download.dir/test-download.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/test-download && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/test-download/CMakeFiles/test-download.dir/test-download.c.o -MF CMakeFiles/test-download.dir/test-download.c.o.d -o CMakeFiles/test-download.dir/test-download.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/test-download/test-download.c -make -f tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/build.make tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/depend +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-download.dir/test-download.c.o" -o ../../../bin/test-download /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 74%] Linking C executable ../../../bin/sortreadtest +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sortreadtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/sortreadtest.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/test-tools/samview-util/CMakeFiles/samview-util.dir/build.make tools/test-tools/samview-util/CMakeFiles/samview-util.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/sortreadtest.dir/sortreadtest.c.o -o ../../../bin/sortreadtest /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +[ 75%] Building C object tools/test-tools/samview-util/CMakeFiles/samview-util.dir/samview.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/samview-util && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/samview-util/CMakeFiles/samview-util.dir/samview.c.o -MF CMakeFiles/samview-util.dir/samview.c.o.d -o CMakeFiles/samview-util.dir/samview.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/samview-util/samview.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f schema-replace.3.0.9 +[ 75%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o -MF CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o.d -o CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/writer-evidence-dnbs.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv schema-replace schema-replace.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s schema-replace.3.0.9 schema-replace.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s schema-replace.3 schema-replace +[ 75%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff.c.o -MF CMakeFiles/vdb-diff.dir/vdb-diff.c.o.d -o CMakeFiles/vdb-diff.dir/vdb-diff.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-diff/vdb-diff.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f test-download.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv test-download test-download.3.0.9 +[ 75%] Built target schema-replace +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-download.3.0.9 test-download.3 +make -f tools/test-tools/testld/CMakeFiles/testld.dir/build.make tools/test-tools/testld/CMakeFiles/testld.dir/depend +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-download.3 test-download make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/testld /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/testld /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/testld/CMakeFiles/testld.dir/DependInfo.cmake "--color=" -make -f tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build.make tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/depend +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sortreadtest.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sortreadtest sortreadtest.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sortreadtest.3.0.9 sortreadtest.3 +[ 75%] Built target test-download +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/test-tools/testld/CMakeFiles/testld.dir/build.make tools/test-tools/testld/CMakeFiles/testld.dir/build +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sortreadtest.3 sortreadtest +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/build.make 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/usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/testld/CMakeFiles/testld.dir/testld.c.o -MF CMakeFiles/testld.dir/testld.c.o.d -o CMakeFiles/testld.dir/testld.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/testld/testld.c +[ 75%] Linking C executable ../../../bin/samview-util +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/samview-util && /usr/bin/cmake -E cmake_link_script CMakeFiles/samview-util.dir/link.txt --verbose=1 +[ 75%] Built target sortreadtest +make -f tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build.make tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/sam-factory /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-factory /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/build.make tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/build +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/samview-util.dir/samview.c.o" -o ../../../bin/samview-util /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/make-read-filter && /usr/bin/cmake -E cmake_link_script CMakeFiles/make-read-filter.dir/link.txt --verbose=1 +make -f tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build.make tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 76%] Building C object tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/txt2kdb.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/txt2kdb && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/txt2kdb.c.o -MF CMakeFiles/txt2kdb.dir/txt2kdb.c.o.d -o CMakeFiles/txt2kdb.dir/txt2kdb.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/txt2kdb/txt2kdb.c +[ 76%] Building CXX object tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/sam-factory.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-factory && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/sam-factory.cpp.o -MF CMakeFiles/sam-factory.dir/sam-factory.cpp.o.d -o CMakeFiles/sam-factory.dir/sam-factory.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/sam-factory/sam-factory.cpp +[ 76%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/get_platform.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/get_platform.c.o -MF CMakeFiles/vdb-copy.dir/get_platform.c.o.d -o CMakeFiles/vdb-copy.dir/get_platform.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/get_platform.c +[ 77%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o -MF CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o.d -o CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/writer-evidence-intervals.c +[ 77%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccsra.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccsra.c.o -MF CMakeFiles/copycat.dir/ccsra.c.o.d -o CMakeFiles/copycat.dir/ccsra.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/ccsra.c +[ 77%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccsubchunk.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccsubchunk.c.o -MF CMakeFiles/copycat.dir/ccsubchunk.c.o.d -o CMakeFiles/copycat.dir/ccsubchunk.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/ccsubchunk.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f samview-util.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv samview-util samview-util.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s samview-util.3.0.9 samview-util.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s samview-util.3 samview-util make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/test-tools/samview-util/CMakeFiles/samview-util.dir/build.make tools/test-tools/samview-util/CMakeFiles/samview-util.dir/build +[ 77%] Linking C executable ../../../bin/vdb-diff +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-diff.dir/link.txt --verbose=1 +[ 77%] Built target samview-util +make -f tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/build.make tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 79%] Building C object tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/schema-replace.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/schema-replace && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/schema-replace.c.o -MF CMakeFiles/schema-replace.dir/schema-replace.c.o.d -o CMakeFiles/schema-replace.dir/schema-replace.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/schema-replace/schema-replace.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/sam-analyze /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-analyze /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/DependInfo.cmake "--color=" +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/vdb-diff.dir/namelist_tools.c.o" "CMakeFiles/vdb-diff.dir/coldefs.c.o" "CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o" "CMakeFiles/vdb-diff.dir/cmn.c.o" "CMakeFiles/vdb-diff.dir/row_by_row.c.o" "CMakeFiles/vdb-diff.dir/col_by_col.c.o" "CMakeFiles/vdb-diff.dir/vdb-diff.c.o" -o ../../../bin/vdb-diff /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 78%] Linking C executable ../../../bin/rowwritetest +[ 78%] Linking C executable ../../../bin/testld +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/testld && /usr/bin/cmake -E cmake_link_script CMakeFiles/testld.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rowwritetest && /usr/bin/cmake -E cmake_link_script CMakeFiles/rowwritetest.dir/link.txt --verbose=1 +[ 78%] Linking CXX executable ../../../../test-bin/makeinputs +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/makeinputs.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/build.make tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/build +make -f tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/build.make tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/testld.dir/testld.c.o -o ../../../bin/testld /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/rowwritetest.dir/rowwritetest.c.o -o ../../../bin/rowwritetest /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/makeinputs.dir/makeinputs.cpp.o CMakeFiles/makeinputs.dir/testsource.cpp.o -o ../../../../test-bin/makeinputs ../../../../ilib/libgeneral-writer.a -lncbi-vdb +[ 78%] Building CXX object tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/main.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/main.cpp.o -MF CMakeFiles/sam-analyze.dir/main.cpp.o.d -o CMakeFiles/sam-analyze.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/sam-analyze/main.cpp +[ 78%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/copy_meta.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/copy_meta.c.o -MF CMakeFiles/vdb-copy.dir/copy_meta.c.o.d -o CMakeFiles/vdb-copy.dir/copy_meta.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/copy_meta.c +[ 78%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccfile.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccfile.c.o -MF CMakeFiles/copycat.dir/ccfile.c.o.d -o CMakeFiles/copycat.dir/ccfile.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/ccfile.c +[ 78%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-seq.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-seq.c.o -MF CMakeFiles/cg-load.dir/writer-seq.c.o.d -o CMakeFiles/cg-load.dir/writer-seq.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/cg-load/writer-seq.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f testld.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-diff.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv testld testld.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-diff vdb-diff.3.0.9 +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/copy_meta.c: In function 'enter_date_name_vers': +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-diff.3.0.9 vdb-diff.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s testld.3.0.9 testld.3 +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/copy_meta.c:301:59: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 301 | rc = KMDataNodeWriteAttr ( node, "build", __DATE__ ); + | ^~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s testld.3 testld +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-diff.3 vdb-diff +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f rowwritetest.3.0.9 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/make-read-filter.dir/make-read-filter.c.o" -o ../../../bin/make-read-filter /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv rowwritetest rowwritetest.3.0.9 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s rowwritetest.3.0.9 rowwritetest.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s rowwritetest.3 rowwritetest +[ 78%] Linking CXX executable ../../../bin/general-loader +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/general-loader.dir/link.txt --verbose=1 +[ 78%] Built target testld +make -f tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/build.make tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/depend make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/build.make tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build.make tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build -[ 80%] Building C object tools/test-tools/samview-util/CMakeFiles/samview-util.dir/samview.c.o +[ 78%] Built target vdb-diff +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/DependInfo.cmake "--color=" +[ 78%] Linking C executable ../../../bin/txt2kdb make -f test/vdb/CMakeFiles/test-vdb.dir/build.make test/vdb/CMakeFiles/test-vdb.dir/depend +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/txt2kdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/txt2kdb.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/samview-util/samview.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 78%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/fileformat.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/vdb /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/vdb /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/vdb/CMakeFiles/test-vdb.dir/DependInfo.cmake "--color=" -make -f tools/test-tools/testld/CMakeFiles/testld.dir/build.make tools/test-tools/testld/CMakeFiles/testld.dir/build -make -f tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/build.make tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/build -[ 80%] Linking C executable ../../../bin/cg-load +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/fileformat.c.o -MF CMakeFiles/copycat.dir/kff/fileformat.c.o.d -o CMakeFiles/copycat.dir/kff/fileformat.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/kff/fileformat.c +[ 78%] Built target rowwritetest +make -f test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/build.make test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/depend +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/general-loader.dir/general-loader.cpp.o" "CMakeFiles/general-loader.dir/protocol-parser.cpp.o" "CMakeFiles/general-loader.dir/database-loader.cpp.o" "CMakeFiles/general-loader.dir/main.cpp.o" -o ../../../bin/general-loader ../../../ilib/libgeneral-writer.a ../../../ilib/libloader.a -lkapp ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/cg-load.dir/link.txt --verbose=1 +make -f tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/build.make tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/build +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/ngs-java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/DependInfo.cmake "--color=" +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/txt2kdb.dir/txt2kdb.c.o -o ../../../bin/txt2kdb /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 81%] Building C object tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/txt2kdb.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/txt2kdb && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/txt2kdb.c.o -MF CMakeFiles/txt2kdb.dir/txt2kdb.c.o.d -o CMakeFiles/txt2kdb.dir/txt2kdb.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/txt2kdb/txt2kdb.c -[ 81%] Building C object tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/rowwritetest.c.o -[ 81%] Building C object tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/sortreadtest.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f test/vdb/CMakeFiles/test-vdb.dir/build.make test/vdb/CMakeFiles/test-vdb.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rowwritetest && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/rowwritetest.c.o -MF CMakeFiles/rowwritetest.dir/rowwritetest.c.o.d -o CMakeFiles/rowwritetest.dir/rowwritetest.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/rowwritetest/rowwritetest.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sortreadtest && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/sortreadtest.c.o -MF CMakeFiles/sortreadtest.dir/sortreadtest.c.o.d -o CMakeFiles/sortreadtest.dir/sortreadtest.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/sortreadtest/sortreadtest.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/cg-load.dir/cg-load.c.o" "CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o" "CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o" "CMakeFiles/cg-load.dir/factory-mappings.c.o" "CMakeFiles/cg-load.dir/factory-reads.c.o" "CMakeFiles/cg-load.dir/factory-tag-lfr.c.o" "CMakeFiles/cg-load.dir/f1_3.c.o" "CMakeFiles/cg-load.dir/f1_5.c.o" "CMakeFiles/cg-load.dir/f1_7.c.o" "CMakeFiles/cg-load.dir/f2_0.c.o" "CMakeFiles/cg-load.dir/f2_2.c.o" "CMakeFiles/cg-load.dir/f2_4.c.o" "CMakeFiles/cg-load.dir/f2_5.c.o" "CMakeFiles/cg-load.dir/file.c.o" "CMakeFiles/cg-load.dir/file-version-factory.c.o" "CMakeFiles/cg-load.dir/formats.c.o" "CMakeFiles/cg-load.dir/writer-algn.c.o" "CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o" "CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o" "CMakeFiles/cg-load.dir/writer-seq.c.o" -o ../../../bin/cg-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -[ 81%] Building CXX object tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/sam-factory.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-factory && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/sam-factory.cpp.o -MF CMakeFiles/sam-factory.dir/sam-factory.cpp.o.d -o CMakeFiles/sam-factory.dir/sam-factory.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/sam-factory/sam-factory.cpp -[ 81%] Linking C executable ../../../bin/vdb-diff make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 81%] Building CXX object tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/main.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-diff.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/main.cpp.o -MF CMakeFiles/sam-analyze.dir/main.cpp.o.d -o CMakeFiles/sam-analyze.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/sam-analyze/main.cpp -[ 81%] Building C object tools/test-tools/testld/CMakeFiles/testld.dir/testld.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/testld && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/testld/CMakeFiles/testld.dir/testld.c.o -MF CMakeFiles/testld.dir/testld.c.o.d -o CMakeFiles/testld.dir/testld.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/testld/testld.c -[ 81%] Building CXX object test/vdb/CMakeFiles/test-vdb.dir/test-vdb.cpp.o -[ 81%] Built target bio-end-makeinputs -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/vdb/CMakeFiles/test-vdb.dir/test-vdb.cpp.o -MF CMakeFiles/test-vdb.dir/test-vdb.cpp.o.d -o CMakeFiles/test-vdb.dir/test-vdb.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/vdb/test-vdb.cpp -make -f test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/build.make test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/depend +[ 78%] Building CXX object tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/main.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/main.cpp.o -MF CMakeFiles/qa-stats.dir/main.cpp.o.d -o CMakeFiles/qa-stats.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/qa-stats/main.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/build.make test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/build +[ 78%] Building CXX object test/vdb/CMakeFiles/test-vdb.dir/test-vdb.cpp.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/ngs-java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/DependInfo.cmake "--color=" +In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/loader-imp.c:113: +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/hashing.hpp:214:7: warning: 'sha1_filter' has a base 'sha_filter' which has internal linkage [-Wsubobject-linkage] + 214 | class sha1_filter : public sha_filter + | ^~~~~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/vdb/CMakeFiles/test-vdb.dir/test-vdb.cpp.o -MF CMakeFiles/test-vdb.dir/test-vdb.cpp.o.d -o CMakeFiles/test-vdb.dir/test-vdb.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/vdb/test-vdb.cpp +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/hashing.hpp:218:7: warning: 'sha224_filter' has a base 'sha_filter' which has internal linkage [-Wsubobject-linkage] + 218 | class sha224_filter : public sha_filter + | ^~~~~~~~~~~~~ +[ 78%] Built target makeinputs +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/hashing.hpp:222:7: warning: 'sha256_filter' has a base 'sha_filter' which has internal linkage [-Wsubobject-linkage] + 222 | class sha256_filter : public sha_filter + | ^~~~~~~~~~~~~ make -f test/external/align-info/CMakeFiles/Build-align-info.dir/build.make test/external/align-info/CMakeFiles/Build-align-info.dir/depend -[ 81%] Linking C executable ../../../bin/read-filter-redact -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/vdb-diff.dir/namelist_tools.c.o" "CMakeFiles/vdb-diff.dir/coldefs.c.o" "CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o" "CMakeFiles/vdb-diff.dir/cmn.c.o" "CMakeFiles/vdb-diff.dir/row_by_row.c.o" "CMakeFiles/vdb-diff.dir/col_by_col.c.o" "CMakeFiles/vdb-diff.dir/vdb-diff.c.o" -o ../../../bin/vdb-diff /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/read-filter-redact.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/align-info /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/align-info /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/align-info/CMakeFiles/Build-align-info.dir/DependInfo.cmake "--color=" +[ 78%] Linking C executable ../../../bin/cg-load +[ 78%] Building Java objects for test-ngs-java.jar +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/cg-load.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.30/Modules/UseJava/ClearClassFiles.cmake +[ 78%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffext.c.o +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/cg-load.dir/cg-load.c.o" "CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o" "CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o" "CMakeFiles/cg-load.dir/factory-mappings.c.o" "CMakeFiles/cg-load.dir/factory-reads.c.o" "CMakeFiles/cg-load.dir/factory-tag-lfr.c.o" "CMakeFiles/cg-load.dir/f1_3.c.o" "CMakeFiles/cg-load.dir/f1_5.c.o" "CMakeFiles/cg-load.dir/f1_7.c.o" "CMakeFiles/cg-load.dir/f2_0.c.o" "CMakeFiles/cg-load.dir/f2_2.c.o" "CMakeFiles/cg-load.dir/f2_4.c.o" "CMakeFiles/cg-load.dir/f2_5.c.o" "CMakeFiles/cg-load.dir/file.c.o" "CMakeFiles/cg-load.dir/file-version-factory.c.o" "CMakeFiles/cg-load.dir/formats.c.o" "CMakeFiles/cg-load.dir/writer-algn.c.o" "CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o" "CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o" "CMakeFiles/cg-load.dir/writer-seq.c.o" -o ../../../bin/cg-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffext.c.o -MF CMakeFiles/copycat.dir/kff/ffext.c.o.d -o CMakeFiles/copycat.dir/kff/ffext.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/kff/ffext.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/external/align-info/CMakeFiles/Build-align-info.dir/build.make test/external/align-info/CMakeFiles/Build-align-info.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'test/external/align-info/CMakeFiles/Build-align-info.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/ngs-java && /usr/bin/javac -classpath :/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib/ngs-java.jar:/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/ngs-java/junit-4.11.jar:/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/ngs-java:/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib:/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib/ngs-java.jar:/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/ngs-java/junit-4.11.jar -d /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir @/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/java_sources +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f txt2kdb.3.0.9 +[ 78%] Built target Build-align-info +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv txt2kdb txt2kdb.3.0.9 +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/depend +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s txt2kdb.3.0.9 txt2kdb.3 +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s txt2kdb.3 txt2kdb +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 79%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffkey.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffmagic.c.o -MF CMakeFiles/copycat.dir/kff/ffmagic.c.o.d -o CMakeFiles/copycat.dir/kff/ffmagic.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/kff/ffmagic.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/DependInfo.cmake "--color=" +[ 79%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/type_matcher.c.o +[ 79%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/type_matcher.c.o -MF CMakeFiles/vdb-copy.dir/type_matcher.c.o.d -o CMakeFiles/vdb-copy.dir/type_matcher.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/type_matcher.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o -MF CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/test-build-version.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f general-loader.3.0.9 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/build.make test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f make-read-filter.3.0.9 +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/build +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f cg-load.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv general-loader general-loader.3.0.9 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o" -o ../../../bin/read-filter-redact /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -[ 81%] Building C object tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/sqlite3.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/sqlite3.c.o -MF CMakeFiles/sam-analyze.dir/sqlite3.c.o.d -o CMakeFiles/sam-analyze.dir/sqlite3.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/sam-analyze/sqlite3.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv make-read-filter make-read-filter.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv cg-load cg-load.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s general-loader.3.0.9 general-loader.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s cg-load.3.0.9 cg-load.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s general-loader.3 general-loader +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s cg-load.3 cg-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/external/align-info/CMakeFiles/Build-align-info.dir/build.make test/external/align-info/CMakeFiles/Build-align-info.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s make-read-filter.3.0.9 make-read-filter.3 -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/build +[ 79%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o -MF CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o.d -o CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/test-filepath.cpp +[ 79%] Built target general-loader +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/depend +[ 79%] Built target cg-load make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/external/align-info/CMakeFiles/Build-align-info.dir/build'. +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/DependInfo.cmake "--color=" +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 80%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/redactval.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o -MF CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o.d -o CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/test-command-line.cpp +[ 81%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/test-json-parse.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 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/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/test-json-parse.cpp +[ 81%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/config_values.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/config_values.c.o -MF CMakeFiles/vdb-copy.dir/config_values.c.o.d -o CMakeFiles/vdb-copy.dir/config_values.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/config_values.c [ 81%] Linking C executable ../../../bin/copycat -[ 81%] Linking C executable ../../../bin/crc32sum cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cmake -E cmake_link_script CMakeFiles/copycat.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/crc32sum && /usr/bin/cmake -E cmake_link_script CMakeFiles/crc32sum.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s make-read-filter.3 make-read-filter -[ 81%] Built target Build-align-info -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/depend -[ 81%] Building Java objects for test-ngs-java.jar -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.30/Modules/UseJava/ClearClassFiles.cmake +[ 81%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/vdb-copy.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/vdb-copy.c.o -MF CMakeFiles/vdb-copy.dir/vdb-copy.c.o.d -o CMakeFiles/vdb-copy.dir/vdb-copy.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/vdb-copy.c +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/copycat.dir/copycat.c.o CMakeFiles/copycat.dir/ccfileformat.c.o CMakeFiles/copycat.dir/cccat.c.o CMakeFiles/copycat.dir/cctree.c.o "CMakeFiles/copycat.dir/cctree-dump.c.o" CMakeFiles/copycat.dir/cctar.c.o CMakeFiles/copycat.dir/ccsra.c.o CMakeFiles/copycat.dir/ccsubchunk.c.o CMakeFiles/copycat.dir/ccfile.c.o CMakeFiles/copycat.dir/kff/fileformat.c.o CMakeFiles/copycat.dir/kff/ffext.c.o CMakeFiles/copycat.dir/kff/ffkey.c.o CMakeFiles/copycat.dir/kff/ffmagic.c.o -o ../../../bin/copycat /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libmagic.so +[ 81%] Building C object tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/sqlite3.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/sqlite3.c.o -MF CMakeFiles/sam-analyze.dir/sqlite3.c.o.d -o CMakeFiles/sam-analyze.dir/sqlite3.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/sam-analyze/sqlite3.c +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f copycat.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv copycat copycat.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s copycat.3.0.9 copycat.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s copycat.3 copycat +In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/fmt.h:24, + from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/loader-imp.c:100: +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v8::detail::value fmt::v8::detail::make_arg(const T&) [with bool IS_PACKED = true; Context = fmt::v8::basic_format_context; type = fmt::v8::detail::type::string_type; T = fmt::v8::basic_string_view; typename std::enable_if::type = 0]': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:1694:64: required from 'constexpr fmt::v8::format_arg_store::format_arg_store(const Args& ...) [with Context = fmt::v8::basic_format_context; Args = {fmt::v8::basic_string_view, char [3]}]' + 1692 | data_{detail::make_arg< + | ~~~~~~~~~~~~~~~~~ + 1693 | is_packed, Context, + | ~~~~~~~~~~~~~~~~~~~ + 1694 | detail::mapped_type_constant::value>(args)...} { + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:1710:18: required from 'OutputIt fmt::v8::format_to(OutputIt, format_string, T&& ...) [with OutputIt = appender; T = {basic_string_view&, const char (&)[3]}; typename std::enable_if::value, int>::type = 0; format_string = basic_format_string&, const char (&)[3]>]' + 1710 | return {args...}; + | ^ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/format-inl.h:74:14: required from here + 74 | format_to(it, FMT_STRING("{}{}"), message, SEP); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:2915:52: in 'constexpr' expansion of 'fmt::v8::make_format_args<>(((const fmt::v8::basic_string_view&)args#0), args#1)' +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:1566:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 1566 | const auto& arg = arg_mapper().map(val); + | ^~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:1566:46: note: the temporary was destroyed at the end of the full expression 'fmt::v8::detail::arg_mapper >().fmt::v8::detail::arg_mapper >::map >((* & val))' + 1566 | const auto& arg = arg_mapper().map(val); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/crc32sum.dir/crc32sum.c.o -o ../../../bin/crc32sum /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f pacbio-load.3.0.9 -[ 81%] Linking CXX executable ../../../../../test-bin/idx-text-makeinputs -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/idx-text-makeinputs.dir/link.txt --verbose=1 -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/depend -[ 81%] Linking C executable ../../../bin/meta-repair make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-repair && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-repair.dir/link.txt --verbose=1 -[ 81%] Linking C executable ../../../bin/pacbio-correct -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv pacbio-load pacbio-load.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pacbio-correct && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-correct.dir/link.txt --verbose=1 -[ 81%] Linking C executable ../../../bin/samview-util -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/samview-util && /usr/bin/cmake -E cmake_link_script CMakeFiles/samview-util.dir/link.txt --verbose=1 -[ 81%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o -[ 81%] Built target make-read-filter -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o -MF CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o.d -o CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/test-filepath.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-load.3.0.9 pacbio-load.3 +[ 81%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o +[ 81%] Building CXX object tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/input.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o -MF CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o.d -o CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/test-sdl-response.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/input.cpp.o -MF CMakeFiles/qa-stats.dir/input.cpp.o.d -o CMakeFiles/qa-stats.dir/input.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/qa-stats/input.cpp +[ 81%] Built target copycat +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f cg-load.3.0.9 -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/copycat.dir/copycat.c.o CMakeFiles/copycat.dir/ccfileformat.c.o CMakeFiles/copycat.dir/cccat.c.o CMakeFiles/copycat.dir/cctree.c.o "CMakeFiles/copycat.dir/cctree-dump.c.o" CMakeFiles/copycat.dir/cctar.c.o CMakeFiles/copycat.dir/ccsra.c.o CMakeFiles/copycat.dir/ccsubchunk.c.o CMakeFiles/copycat.dir/ccfile.c.o CMakeFiles/copycat.dir/kff/fileformat.c.o CMakeFiles/copycat.dir/kff/ffext.c.o CMakeFiles/copycat.dir/kff/ffkey.c.o CMakeFiles/copycat.dir/kff/ffmagic.c.o -o ../../../bin/copycat /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libmagic.so -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv cg-load cg-load.3.0.9 -make -f test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build.make test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/depend +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-load.3 pacbio-load +[ 81%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o -MF CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o.d -o CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/test-accession.cpp +[ 81%] Building CXX object tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/output.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/output.cpp.o -MF CMakeFiles/qa-stats.dir/output.cpp.o.d -o CMakeFiles/qa-stats.dir/output.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/qa-stats/output.cpp +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o" -o ../../../../../test-bin/idx-text-makeinputs ../../../../../ilib/libgeneral-writer.a -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/kdbmeta /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/kdbmeta /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s cg-load.3.0.9 cg-load.3 -[ 81%] Linking C executable ../../../bin/kdb-index -make -f test/external/prefetch/CMakeFiles/SlowTest_Prefetch.dir/build.make test/external/prefetch/CMakeFiles/SlowTest_Prefetch.dir/depend +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 81%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o -MF CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o.d -o CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/test-uuid.cpp +[ 81%] Linking C executable ../../../bin/vdb-copy +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-copy.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/vdb-copy.dir/context.c.o" "CMakeFiles/vdb-copy.dir/helper.c.o" "CMakeFiles/vdb-copy.dir/coldefs.c.o" "CMakeFiles/vdb-copy.dir/get_platform.c.o" "CMakeFiles/vdb-copy.dir/copy_meta.c.o" "CMakeFiles/vdb-copy.dir/type_matcher.c.o" "CMakeFiles/vdb-copy.dir/redactval.c.o" "CMakeFiles/vdb-copy.dir/config_values.c.o" "CMakeFiles/vdb-copy.dir/vdb-copy.c.o" -o ../../../bin/vdb-copy /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-copy.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-copy vdb-copy.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-copy.3.0.9 vdb-copy.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-copy.3 vdb-copy +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cmake -E copy /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/vdb-copy.kfg /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/ncbi/vdb-copy.kfg make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/samview-util.dir/samview.c.o" -o ../../../bin/samview-util /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/kdb-index && /usr/bin/cmake -E cmake_link_script CMakeFiles/kdb-index.dir/link.txt --verbose=1 +[ 81%] Built target vdb-copy +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/prefetch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/prefetch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/prefetch/CMakeFiles/SlowTest_Prefetch.dir/DependInfo.cmake "--color=" -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/ngs-java && /usr/bin/javac -classpath :/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib/ngs-java.jar:/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/ngs-java/junit-4.11.jar:/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/ngs-java:/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib:/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib/ngs-java.jar:/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/ngs-java/junit-4.11.jar -d /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir @/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/java_sources +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/meta-repair.dir/meta-repair.c.o" -o ../../../bin/meta-repair /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s cg-load.3 cg-load -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-diff.3.0.9 [ 81%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/test-run-source.cpp -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o" -o ../../../bin/pacbio-correct /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -make -f test/external/srapath/CMakeFiles/Build-srapath.dir/build.make test/external/srapath/CMakeFiles/Build-srapath.dir/depend +In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.cpp:36, + from /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/test-accession.cpp:39: +/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ^ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +[ 81%] Linking CXX executable ../../../test-bin/Test_Drivertool_BuildVersion +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_BuildVersion.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o" -o ../../../test-bin/Test_Drivertool_BuildVersion make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 81%] Built target Test_Drivertool_BuildVersion +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/srapath /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/srapath /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/srapath/CMakeFiles/Build-srapath.dir/DependInfo.cmake "--color=" -[ 81%] Built target pacbio-load -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-diff vdb-diff.3.0.9 -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/kdb-index.dir/kdb-index.c.o" -o ../../../bin/kdb-index /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 81%] Linking CXX executable ../../../bin/align-cache [ 81%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/test-tool-args.cpp +Note: ngs_test_lib_load.java uses unchecked or unsafe operations. +Note: Recompile with -Xlint:unchecked for details. +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/java_compiled_test-ngs-java +[ 81%] Generating CMakeFiles/test-ngs-java.dir/java_class_filelist +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.30/Modules/UseJava/ClassFilelist.cmake +[ 82%] Creating Java archive test-ngs-java.jar +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib/test-ngs-java.jar @java_class_filelist +[ 82%] Linking CXX executable ../../../test-bin/Test_Drivertool_CommandLine +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_CommandLine.dir/link.txt --verbose=1 +[ 82%] Linking CXX executable ../../../test-bin/Test_Drivertool_Accession +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_Accession.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o" -o ../../../test-bin/Test_Drivertool_CommandLine +In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/sratools.hpp:31, + from /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/run-source.hpp:39, + from /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/test-run-source.cpp:38: +/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ^ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o" -o ../../../test-bin/Test_Drivertool_Accession +[ 83%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/tool-args.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=test-ngs-java.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.30/Modules/UseJava/Symlinks.cmake make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build.make test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-diff.3.0.9 vdb-diff.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/align-cache && /usr/bin/cmake -E cmake_link_script CMakeFiles/align-cache.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-diff.3 vdb-diff +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 83%] Built target Test_Drivertool_CommandLine +make -f test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build.make test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/kdbmeta /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/kdbmeta /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 83%] Built target test-ngs-java +make -f test/external/prefetch/CMakeFiles/SlowTest_Prefetch.dir/build.make test/external/prefetch/CMakeFiles/SlowTest_Prefetch.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/prefetch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/prefetch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/prefetch/CMakeFiles/SlowTest_Prefetch.dir/DependInfo.cmake "--color=" +[ 83%] Built target Test_Drivertool_Accession +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build.make test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f read-filter-redact.3.0.9 -[ 82%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/tool-args.cpp make -f test/external/prefetch/CMakeFiles/SlowTest_Prefetch.dir/build.make test/external/prefetch/CMakeFiles/SlowTest_Prefetch.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 82%] Linking C executable ../../../bin/check-redact -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/check-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/check-redact.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv read-filter-redact read-filter-redact.3.0.9 -[ 82%] Built target cg-load -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s read-filter-redact.3.0.9 read-filter-redact.3 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/align-cache.dir/align-cache.cpp.o" "CMakeFiles/align-cache.dir/helper.cpp.o" -o ../../../bin/align-cache /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -[ 82%] Linking C executable ../../../bin/testld -[ 82%] Linking C executable ../../../bin/schema-replace -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/testld && /usr/bin/cmake -E cmake_link_script CMakeFiles/testld.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s read-filter-redact.3 read-filter-redact -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/schema-replace && /usr/bin/cmake -E cmake_link_script CMakeFiles/schema-replace.dir/link.txt --verbose=1 -[ 82%] Built target Build-kdbmeta -make -f test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build.make test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/depend -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/check-redact.dir/check-redact.c.o" -o ../../../bin/check-redact /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 83%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o +[ 83%] Built target Build-kdbmeta +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/run-source.cpp +make -f test/external/srapath/CMakeFiles/Build-srapath.dir/build.make test/external/srapath/CMakeFiles/Build-srapath.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sra-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 82%] Linking C executable ../../../bin/sortreadtest -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sortreadtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/sortreadtest.dir/link.txt --verbose=1 -[ 82%] Building CXX object test/external/prefetch/CMakeFiles/SlowTest_Prefetch.dir/test-quality.cpp.o -[ 82%] Built target vdb-diff -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 82%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/srapath /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/srapath /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/srapath/CMakeFiles/Build-srapath.dir/DependInfo.cmake "--color=" +[ 83%] Building CXX object test/external/prefetch/CMakeFiles/SlowTest_Prefetch.dir/test-quality.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/prefetch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/prefetch\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/prefetch/CMakeFiles/SlowTest_Prefetch.dir/test-quality.cpp.o -MF CMakeFiles/SlowTest_Prefetch.dir/test-quality.cpp.o.d -o CMakeFiles/SlowTest_Prefetch.dir/test-quality.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/prefetch/test-quality.cpp -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/testld.dir/testld.c.o -o ../../../bin/testld /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/command-line.cpp -[ 82%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f test/external/srapath/CMakeFiles/Build-srapath.dir/build.make test/external/srapath/CMakeFiles/Build-srapath.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'test/external/srapath/CMakeFiles/Build-srapath.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f crc32sum.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/run-source.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv crc32sum crc32sum.3.0.9 -[ 82%] Built target read-filter-redact +[ 83%] Built target Build-srapath +make -f test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build.make test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sra-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build.make test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f meta-repair.3.0.9 -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/schema-replace.dir/schema-replace.c.o" -o ../../../bin/schema-replace /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/sortreadtest.dir/sortreadtest.c.o -o ../../../bin/sortreadtest /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv meta-repair meta-repair.3.0.9 -[ 82%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -[ 82%] Linking C executable ../../../bin/pacbio-loadxml -[ 82%] Built target Build-srapath -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/command-line.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-loadxml.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-repair.3.0.9 meta-repair.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s crc32sum.3.0.9 crc32sum.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-repair.3 meta-repair -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s crc32sum.3 crc32sum -[ 82%] Built target Build-sra-pileup -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f copycat.3.0.9 -[ 82%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/pacbio-loadxml.dir/pstring.c.o" "CMakeFiles/pacbio-loadxml.dir/common-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/run-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/loader-file.c.o" "CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o" "CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o" "CMakeFiles/pacbio-loadxml.dir/loader.c.o" "CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o" -o ../../../bin/pacbio-loadxml ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv copycat copycat.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f kdb-index.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/build-version.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv kdb-index kdb-index.3.0.9 -[ 82%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s copycat.3.0.9 copycat.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f pacbio-correct.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/file-path.posix.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kdb-index.3.0.9 kdb-index.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s copycat.3 copycat -[ 82%] Built target meta-repair -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kdb-index.3 kdb-index -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv pacbio-correct pacbio-correct.3.0.9 -[ 82%] Built target crc32sum +[ 83%] Built target Build-sra-pileup make -f test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build.make test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/depend -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-correct.3.0.9 pacbio-correct.3 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sra-stat /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/DependInfo.cmake "--color=" -[ 82%] Linking C executable ../../../bin/txt2kdb -[ 83%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/txt2kdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/txt2kdb.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/SDL-response.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-correct.3 pacbio-correct -[ 83%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f samview-util.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/file-path.posix.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv samview-util samview-util.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s samview-util.3.0.9 samview-util.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s samview-util.3 samview-util -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 83%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f testld.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/json-parse.cpp -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/txt2kdb.dir/txt2kdb.c.o -o ../../../bin/txt2kdb /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build.make test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 83%] Built target copycat -[ 83%] Linking CXX executable ../../../bin/sra-info -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f check-redact.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-info.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv testld testld.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv check-redact check-redact.3.0.9 -[ 83%] Built target kdb-index -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s check-redact.3.0.9 check-redact.3 -[ 83%] Built target samview-util -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s testld.3.0.9 testld.3 -make -f test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build.make test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/depend [ 83%] Built target Build-sra-stat -make -f test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build.make test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/depend +make -f test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build.make test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sra-stat /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s check-redact.3 check-redact -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s testld.3 testld +[ 84%] Linking CXX executable ../../../test-bin/SlowTest_Prefetch +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/prefetch && /usr/bin/cmake -E cmake_link_script CMakeFiles/SlowTest_Prefetch.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build.make test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/SlowTest_Prefetch.dir/test-quality.cpp.o" -o ../../../test-bin/SlowTest_Prefetch /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 84%] Building CXX object test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/sra-stat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -MF CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o.d -o CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sra-stat/testAssemblyStatistics.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 84%] Built target SlowTest_Prefetch +make -f test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build.make test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/vdb-config /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f schema-replace.3.0.9 -[ 83%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -[ 83%] Built target pacbio-correct +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build.make test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 84%] Building CXX object test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o -MF CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o.d -o CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/vdb-config/test-vdb-config-model.cpp +[ 84%] Linking CXX executable ../../../test-bin/Test_Drivertool_UUID +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_UUID.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o" -o ../../../test-bin/Test_Drivertool_UUID +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 84%] Built target Test_Drivertool_UUID make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/depend -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/build-version.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv schema-replace schema-replace.3.0.9 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/sra-info.dir/main.cpp.o" "CMakeFiles/sra-info.dir/sra-info.cpp.o" "CMakeFiles/sra-info.dir/formatter.cpp.o" -o ../../../bin/sra-info /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s schema-replace.3.0.9 schema-replace.3 -[ 83%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 84%] Building CXX object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/vdb-dump/test-view-spec.cpp +In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/sratools.hpp:31, + from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/run-source.hpp:39, + from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/run-source.cpp:51: +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ^ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +[ 84%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/command-line.cpp +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v8::detail::value fmt::v8::detail::make_arg(const T&) [with bool IS_PACKED = true; Context = fmt::v8::basic_format_context; type = fmt::v8::detail::type::string_type; T = std::__cxx11::basic_string; typename std::enable_if::type = 0]': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:1694:64: required from 'constexpr fmt::v8::format_arg_store::format_arg_store(const Args& ...) [with Context = fmt::v8::basic_format_context; Args = {std::__cxx11::basic_string, std::allocator >, spdlog::stopwatch, long unsigned int}]' + 1692 | data_{detail::make_arg< + | ~~~~~~~~~~~~~~~~~ + 1693 | is_packed, Context, + | ~~~~~~~~~~~~~~~~~~~ + 1694 | detail::mapped_type_constant::value>(args)...} { + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:1710:18: required from 'void spdlog::logger::log_(spdlog::source_loc, spdlog::level::level_enum, spdlog::string_view_t, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int}; spdlog::string_view_t = fmt::v8::basic_string_view]' + 1710 | return {args...}; + | ^ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/logger.h:90:13: required from 'void spdlog::logger::log(spdlog::source_loc, spdlog::level::level_enum, fmt::v8::format_string, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int}; fmt::v8::format_string = fmt::v8::basic_format_string, std::allocator >&, spdlog::stopwatch&, long unsigned int>]' + 90 | log_(loc, lvl, fmt, std::forward(args)...); + | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/logger.h:96:12: required from 'void spdlog::logger::log(spdlog::level::level_enum, fmt::v8::format_string, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int}; fmt::v8::format_string = fmt::v8::basic_format_string, std::allocator >&, spdlog::stopwatch&, long unsigned int>]' + 96 | log(source_loc{}, lvl, fmt, std::forward(args)...); + | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/logger.h:158:12: required from 'void spdlog::logger::info(fmt::v8::format_string, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int}; fmt::v8::format_string = fmt::v8::basic_format_string, std::allocator >&, spdlog::stopwatch&, long unsigned int>]' + 158 | log(level::info, fmt, std::forward(args)...); + | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/spdlog.h:157:31: required from 'void spdlog::info(fmt::v8::format_string, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, stopwatch&, long unsigned int}; fmt::v8::format_string = fmt::v8::basic_format_string, std::allocator >&, stopwatch&, long unsigned int>]' + 157 | default_logger_raw()->info(fmt, std::forward(args)...); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/spot_assembly.hpp:386:21: required from here + 386 | spdlog::info("{} Batch insert: {:.3}, {:L} reads", batch_idx, sw, new_batch.m_spot_map->size()); + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/logger.h:370:68: in 'constexpr' expansion of 'fmt::v8::make_format_args<>(args#0, ((const spdlog::stopwatch&)args#1), ((const long unsigned int&)args#2))' +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:1566:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 1566 | const auto& arg = arg_mapper().map(val); + | ^~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:1566:46: note: the temporary was destroyed at the end of the full expression 'fmt::v8::detail::arg_mapper >().fmt::v8::detail::arg_mapper >::map >((* & val))' + 1566 | const auto& arg = arg_mapper().map(val); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ +[ 84%] Linking CXX executable ../../../test-bin/testAssemblyStatistics +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAssemblyStatistics.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -o ../../../test-bin/testAssemblyStatistics /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/tool-args.cpp -[ 83%] Built target idx-text-makeinputs -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s schema-replace.3 schema-replace -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 83%] Linking C executable ../../../bin/test-download -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/test-download && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-download.dir/link.txt --verbose=1 +[ 84%] Built target testAssemblyStatistics make -f test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build.make test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/depend -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sortreadtest.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sortreadtest sortreadtest.3.0.9 -make -f test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build.make test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/DependInfo.cmake "--color=" -[ 83%] Built target testld +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build.make test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 84%] Building CXX object test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -MF CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o.d -o CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/vdb-dump/makedb.cpp +[ 84%] Linking CXX executable ../../../test-bin/Test_Drivertool_JsonParsing +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_JsonParsing.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_JsonParsing.dir/test-json-parse.cpp.o" -o ../../../test-bin/Test_Drivertool_JsonParsing +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 84%] Linking CXX executable ../../../bin/sratools +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/sratools.dir/link.txt --verbose=1 +[ 84%] Built target Test_Drivertool_JsonParsing make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/DependInfo.cmake "--color=" -[ 83%] Built target check-redact -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sortreadtest.3.0.9 sortreadtest.3 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/sratools.dir/sratools.cpp.o CMakeFiles/sratools.dir/config.cpp.o "CMakeFiles/sratools.dir/command-line.cpp.o" "CMakeFiles/sratools.dir/run-source.cpp.o" CMakeFiles/sratools.dir/proc.cpp.o CMakeFiles/sratools.dir/uuid.cpp.o CMakeFiles/sratools.dir/accession.cpp.o CMakeFiles/sratools.dir/service.cpp.o "CMakeFiles/sratools.dir/json-parse.cpp.o" "CMakeFiles/sratools.dir/SDL-response.cpp.o" "CMakeFiles/sratools.dir/tool-args.cpp.o" "CMakeFiles/sratools.dir/build-version.cpp.o" "CMakeFiles/sratools.dir/file-path.posix.cpp.o" CMakeFiles/sratools.dir/proc.posix.cpp.o -o ../../../bin/sratools /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 84%] Linking C executable ../../../bin/rowwritetest -[ 84%] Built target schema-replace -make -f test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build.make test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rowwritetest && /usr/bin/cmake -E cmake_link_script CMakeFiles/rowwritetest.dir/link.txt --verbose=1 +make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 84%] Building CXX object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -MF CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o.d -o CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/vdb-dump/test-view-alias.cpp +[ 84%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/build-version.cpp +[ 84%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/file-path.posix.cpp +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sratools.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sratools sratools.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.0.9 sratools.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3 sratools +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 84%] Built target sratools make -f test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/build.make test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build.make test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/depend -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sortreadtest.3 sortreadtest -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sra-info /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-info /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/vdb-validate /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-validate /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-download.dir/test-download.c.o" -o ../../../bin/test-download /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 85%] Linking CXX executable ../../../test-bin/SlowTest_Prefetch -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/prefetch && /usr/bin/cmake -E cmake_link_script CMakeFiles/SlowTest_Prefetch.dir/link.txt --verbose=1 -make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f txt2kdb.3.0.9 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build.make test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 85%] Building CXX object test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv txt2kdb txt2kdb.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/sra-stat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -MF CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o.d -o CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sra-stat/testAssemblyStatistics.cpp -[ 85%] Building CXX object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/vdb-dump/test-view-spec.cpp +[ 84%] Linking CXX executable ../../../test-bin/vdb-dump-makedb +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-dump-makedb.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/build.make test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f align-cache.3.0.9 -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/rowwritetest.dir/rowwritetest.c.o -o ../../../bin/rowwritetest /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -[ 85%] Built target sortreadtest -[ 85%] Building CXX object test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s txt2kdb.3.0.9 txt2kdb.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv align-cache align-cache.3.0.9 -[ 85%] Building CXX object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o -MF CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o.d -o CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/vdb-config/test-vdb-config-model.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -MF CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o.d -o CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/vdb-dump/test-view-alias.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s txt2kdb.3 txt2kdb -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build.make test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/SlowTest_Prefetch.dir/test-quality.cpp.o" -o ../../../test-bin/SlowTest_Prefetch /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s align-cache.3.0.9 align-cache.3 -[ 85%] Building CXX object test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -MF CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o.d -o CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/vdb-dump/makedb.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s align-cache.3 align-cache -[ 85%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -[ 85%] Building CXX object test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-view-spec.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o" -o ../../../test-bin/vdb-dump-makedb /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +[ 84%] Building CXX object test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-validate && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-validate -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o -MF CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o.d -o CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/vdb-validate/test-vdb-validate.cpp -[ 86%] Building CXX object test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-info && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/sra-info\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-info -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o -MF CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o.d -o CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sra-info/test-sra-info.cpp -[ 86%] Built target txt2kdb -make -f test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build.make test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/DependInfo.cmake "--color=" -[ 86%] Built target align-cache -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f rowwritetest.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv rowwritetest rowwritetest.3.0.9 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build.make test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s rowwritetest.3.0.9 rowwritetest.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s rowwritetest.3 rowwritetest -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f test-download.3.0.9 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 86%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-helper.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f pacbio-loadxml.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv test-download test-download.3.0.9 -[ 86%] Linking C executable ../../../bin/vdb-copy -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv pacbio-loadxml pacbio-loadxml.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-copy.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-download.3.0.9 test-download.3 -[ 86%] Built target Build-latf-load -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-loadxml.3.0.9 pacbio-loadxml.3 -make -f test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build.make test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/depend -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-loadxml.3 pacbio-loadxml -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-download.3 test-download +[ 84%] Built target vdb-dump-makedb +make -f test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build.make test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/DependInfo.cmake "--color=" -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/vdb-copy.dir/context.c.o" "CMakeFiles/vdb-copy.dir/helper.c.o" "CMakeFiles/vdb-copy.dir/coldefs.c.o" "CMakeFiles/vdb-copy.dir/get_platform.c.o" "CMakeFiles/vdb-copy.dir/copy_meta.c.o" "CMakeFiles/vdb-copy.dir/type_matcher.c.o" "CMakeFiles/vdb-copy.dir/redactval.c.o" "CMakeFiles/vdb-copy.dir/config_values.c.o" "CMakeFiles/vdb-copy.dir/vdb-copy.c.o" -o ../../../bin/vdb-copy /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 86%] Built target rowwritetest -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-info.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sra-info sra-info.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-info.3.0.9 sra-info.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-info.3 sra-info -[ 86%] Built target test-download -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sra-info /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-info /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build.make test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build +make -f test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build.make test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 87%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -[ 87%] Built target pacbio-loadxml -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-context.c -make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/depend -[ 87%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o +[ 85%] Building CXX object test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-info && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/sra-info\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-info -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o -MF CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o.d -o CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sra-info/test-sra-info.cpp +make -f test/external/sra-info/CMakeFiles/Build-sra-info.dir/build.make test/external/sra-info/CMakeFiles/Build-sra-info.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-coldefs.c -[ 87%] Building CXX object test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -MF CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o.d -o CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/test-id2name.cpp -[ 87%] Built target sra-info +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sra-info /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-info /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-info/CMakeFiles/Build-sra-info.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build -make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/external/sra-info/CMakeFiles/Build-sra-info.dir/build.make test/external/sra-info/CMakeFiles/Build-sra-info.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 87%] Linking CXX executable ../../../../test-bin/makeinputs -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/makeinputs.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-copy.3.0.9 -[ 87%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-copy vdb-copy.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-copy.3.0.9 vdb-copy.3 +make[3]: Nothing to be done for 'test/external/sra-info/CMakeFiles/Build-sra-info.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/wb-test-fastq.cpp -make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build -[ 87%] Built target SlowTest_Prefetch -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-copy.3 vdb-copy -make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/depend -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/makeinputs.dir/makeinputs.cpp.o CMakeFiles/makeinputs.dir/testsource.cpp.o -o ../../../../test-bin/makeinputs ../../../../ilib/libgeneral-writer.a -lncbi-vdb +[ 85%] Built target Build-sra-info +make -f test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build.make test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cmake -E copy /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-copy/vdb-copy.kfg /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/ncbi/vdb-copy.kfg -[ 87%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-str.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build +make -f test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build.make test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 88%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o +[ 85%] Building CXX object test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/bam-load && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o -MF CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o.d -o CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/bam-load/sam-platform.cpp +[ 85%] Linking CXX executable ../../../test-bin/Test_Vdb_dump_view-alias +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Vdb_dump_view-alias.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o" -o ../../../test-bin/Test_Vdb_dump_view-alias /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 85%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/command-line.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/wb-test-fastq-parse.cpp -[ 88%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/test-fastq-loader.cpp -[ 88%] Built target vdb-copy +[ 85%] Built target Test_Vdb_dump_view-alias make -f test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/build.make test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/build.make test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 88%] Building C object test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o +[ 85%] Building C object test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/loaders/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o -MF CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o.d -o CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/loader/qfiletest.c +[ 85%] Linking CXX executable ../../../test-bin/Test_BamLoader_platform +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/bam-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_BamLoader_platform.dir/link.txt --verbose=1 +[ 85%] Linking C executable ../../../test-bin/Test_KAPP_qfile +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_KAPP_qfile.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o" -o ../../../test-bin/Test_BamLoader_platform +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o -o ../../../test-bin/Test_KAPP_qfile ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 85%] Linking CXX executable ../../../test-bin/Test_Drivertool_ToolArgs +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_ToolArgs.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o" -o ../../../test-bin/Test_Drivertool_ToolArgs /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 88%] Built target makeinputs +[ 85%] Built target Test_KAPP_qfile make -f test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/depend -make -f test/loaders/loader/CMakeFiles/Test_LOADER.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADER.dir/depend +[ 85%] Linking CXX executable ../../../bin/sam-factory +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-factory && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-factory.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader/CMakeFiles/Test_LOADER.dir/DependInfo.cmake "--color=" -[ 88%] Linking CXX executable ../../../bin/sratools -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/sratools.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/sam-factory.dir/sam-factory.cpp.o" -o ../../../bin/sam-factory /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 85%] Building CXX object test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/loaders/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o -MF CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o.d -o CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/loader/test-loaderfile.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 85%] Built target Test_BamLoader_platform +make -f test/loaders/loader/CMakeFiles/Test_LOADER.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADER.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader/CMakeFiles/Test_LOADER.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f test/loaders/loader/CMakeFiles/Test_LOADER.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADER.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 88%] Building CXX object test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/loaders/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o -MF CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o.d -o CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/loader/test-loaderfile.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/sratools.dir/sratools.cpp.o CMakeFiles/sratools.dir/config.cpp.o "CMakeFiles/sratools.dir/command-line.cpp.o" "CMakeFiles/sratools.dir/run-source.cpp.o" CMakeFiles/sratools.dir/proc.cpp.o CMakeFiles/sratools.dir/uuid.cpp.o CMakeFiles/sratools.dir/accession.cpp.o CMakeFiles/sratools.dir/service.cpp.o "CMakeFiles/sratools.dir/json-parse.cpp.o" "CMakeFiles/sratools.dir/SDL-response.cpp.o" "CMakeFiles/sratools.dir/tool-args.cpp.o" "CMakeFiles/sratools.dir/build-version.cpp.o" "CMakeFiles/sratools.dir/file-path.posix.cpp.o" CMakeFiles/sratools.dir/proc.posix.cpp.o -o ../../../bin/sratools /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 88%] Building CXX object test/loaders/loader/CMakeFiles/Test_LOADER.dir/loadertest.cpp.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 85%] Building CXX object test/loaders/loader/CMakeFiles/Test_LOADER.dir/loadertest.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/loaders/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/loaders/loader/CMakeFiles/Test_LOADER.dir/loadertest.cpp.o -MF CMakeFiles/Test_LOADER.dir/loadertest.cpp.o.d -o CMakeFiles/Test_LOADER.dir/loadertest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/loader/loadertest.cpp -In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/sratools.hpp:31, - from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/run-source.hpp:39, - from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/run-source.cpp:51: -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ^ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +[ 85%] Built target Test_Drivertool_ToolArgs make -f test/internal/align/CMakeFiles/Test_Align_samextract.dir/build.make test/internal/align/CMakeFiles/Test_Align_samextract.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/align /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/align /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/align/CMakeFiles/Test_Align_samextract.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f test/internal/align/CMakeFiles/Test_Align_samextract.dir/build.make test/internal/align/CMakeFiles/Test_Align_samextract.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 88%] Building CXX object test/internal/align/CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o +[ 85%] Building CXX object test/internal/align/CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/align && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/align\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/../ncbi-vdb/interfaces/ext -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/internal/align/CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o -MF CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o.d -o CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/align/test-samextract.cpp -[ 88%] Linking C executable ../../../test-bin/Test_KAPP_qfile -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_KAPP_qfile.dir/link.txt --verbose=1 -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o -o ../../../test-bin/Test_KAPP_qfile ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 85%] Built target sam-factory +make -f test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build.make test/internal/align-cache/CMakeFiles/Build-align-cache.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/align-cache /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/align-cache /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/align-cache/CMakeFiles/Build-align-cache.dir/DependInfo.cmake "--color=" /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/loader/loadertest.cpp:307:117: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 307 | REQUIRE_RC ( KLoaderMeta_Write ( node, LoaderName.c_str(), __DATE__, FormatterName.c_str(), KAppVersion() ) ); | ^ @@ -5669,851 +5729,844 @@ /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/loader/loadertest.cpp:364:80: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 364 | REQUIRE_EQ ( string ( __DATE__), GetMetadata ( "SOFTWARE/loader", "date" ) ); | ^ -In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/sratools.hpp:31, - from /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/run-source.hpp:39, - from /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/test-run-source.cpp:38: -/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ^ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -make -f test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build.make test/internal/align-cache/CMakeFiles/Build-align-cache.dir/depend +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build.make test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/align-cache /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/align-cache /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/align-cache/CMakeFiles/Build-align-cache.dir/DependInfo.cmake "--color=" +make[3]: Nothing to be done for 'test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 85%] Built target Build-align-cache make -f test/internal/copycat/CMakeFiles/Build-copycat.dir/build.make test/internal/copycat/CMakeFiles/Build-copycat.dir/depend -[ 88%] Built target Test_KAPP_qfile make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/copycat /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/copycat /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/copycat/CMakeFiles/Build-copycat.dir/DependInfo.cmake "--color=" +[ 85%] Linking CXX executable ../../../bin/qa-stats +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qa-stats.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build.make test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build +make -f test/internal/copycat/CMakeFiles/Build-copycat.dir/build.make test/internal/copycat/CMakeFiles/Build-copycat.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build'. +make[3]: Nothing to be done for 'test/internal/copycat/CMakeFiles/Build-copycat.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/qa-stats.dir/main.cpp.o" "CMakeFiles/qa-stats.dir/input.cpp.o" "CMakeFiles/qa-stats.dir/output.cpp.o" -o ../../../bin/qa-stats +[ 85%] Built target Build-copycat make -f test/internal/copycat/CMakeFiles/Test_KFF.dir/build.make test/internal/copycat/CMakeFiles/Test_KFF.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/copycat /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/copycat /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/copycat/CMakeFiles/Test_KFF.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/internal/copycat/CMakeFiles/Test_KFF.dir/build.make test/internal/copycat/CMakeFiles/Test_KFF.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 85%] Building CXX object test/internal/copycat/CMakeFiles/Test_KFF.dir/kfftest.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/kfftest.cpp.o -MF CMakeFiles/Test_KFF.dir/kfftest.cpp.o.d -o CMakeFiles/Test_KFF.dir/kfftest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/copycat/kfftest.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 85%] Built target qa-stats make -f test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build.make test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/make-read-filter /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/make-read-filter /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/DependInfo.cmake "--color=" -[ 88%] Built target Build-align-cache make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/internal/copycat/CMakeFiles/Build-copycat.dir/build.make test/internal/copycat/CMakeFiles/Build-copycat.dir/build -In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/loader-imp.c:113: -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/hashing.hpp:214:7: warning: 'sha1_filter' has a base 'sha_filter' which has internal linkage [-Wsubobject-linkage] - 214 | class sha1_filter : public sha_filter - | ^~~~~~~~~~~ -make -f test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build.make test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/depend -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/hashing.hpp:218:7: warning: 'sha224_filter' has a base 'sha_filter' which has internal linkage [-Wsubobject-linkage] - 218 | class sha224_filter : public sha_filter - | ^~~~~~~~~~~~~ -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build.make test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/internal/copycat/CMakeFiles/Build-copycat.dir/build'. +make[3]: Nothing to be done for 'test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/hashing.hpp:222:7: warning: 'sha256_filter' has a base 'sha_filter' which has internal linkage [-Wsubobject-linkage] - 222 | class sha256_filter : public sha_filter - | ^~~~~~~~~~~~~ +[ 85%] Built target Build-make-read-filter +make -f test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build.make test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/read-filter-redact /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/read-filter-redact /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sratools.3.0.9 -[ 88%] Linking CXX executable ../../../test-bin/vdb-dump-makedb -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-dump-makedb.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sratools sratools.3.0.9 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/internal/copycat/CMakeFiles/Test_KFF.dir/build.make test/internal/copycat/CMakeFiles/Test_KFF.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 88%] Built target Build-copycat -make -f test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build.make test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.0.9 sratools.3 -make -f test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build.make test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build.make test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build'. +make[3]: Nothing to be done for 'test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build.make test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3 sratools +[ 85%] Built target Build-read-filter-redact +make -f test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build.make test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/vdb-copy /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/vdb-copy /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build'. +make -f test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build.make test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 85%] Built target Build-vdb-copy make -f test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build.make test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/vdb-diff /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/vdb-diff /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o" -o ../../../test-bin/vdb-dump-makedb /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -[ 88%] Built target sratools +[ 85%] Linking CXX executable ../../../test-bin/Test_Drivertool_SDLResponse +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_SDLResponse.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o" -o ../../../test-bin/Test_Drivertool_SDLResponse +make -f test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build.make test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 85%] Built target Build-vdb-diff make -f ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build.make ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 86%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-c++ /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++ /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/SDL-response.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build.make test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build +make -f ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build.make ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build'. +[ 86%] Building CXX object ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-c++\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o -MF CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o.d -o CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-c++/NCBI-NGS.cpp +[ 86%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/file-path.posix.cpp +[ 86%] Linking CXX executable ../../../test-bin/Test_Drivertool_FilePath +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_FilePath.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o" -o ../../../test-bin/Test_Drivertool_FilePath /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 88%] Built target Build-make-read-filter -[ 88%] Building CXX object test/internal/copycat/CMakeFiles/Test_KFF.dir/kfftest.cpp.o +[ 86%] Linking CXX executable ../../../test-bin/Test_VdbValidate_Unit +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-validate && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_VdbValidate_Unit.dir/link.txt --verbose=1 +[ 86%] Built target Test_Drivertool_SDLResponse make -f ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/depend -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/kfftest.cpp.o -MF CMakeFiles/Test_KFF.dir/kfftest.cpp.o.d -o CMakeFiles/Test_KFF.dir/kfftest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/copycat/kfftest.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/DependInfo.cmake "--color=" -[ 88%] Built target Build-read-filter-redact -make -f ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/depend -[ 88%] Built target Build-vdb-copy +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o" -o ../../../test-bin/Test_VdbValidate_Unit /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build.make test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/build.make ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/depend +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc && bash -c /usr/bin/jar\ -cf\ /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib/ngs-doc.jar\ . make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build.make ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/examples /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/DependInfo.cmake "--color=" +[ 86%] Built target Test_Drivertool_FilePath +make -f ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/DependInfo.cmake "--color=" +[ 86%] Built target Test_VdbValidate_Unit +make -f ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/build.make ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/examples /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/build -[ 88%] Built target Build-vdb-diff -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f libs/general-writer/CMakeFiles/gw-dumper.dir/build.make libs/general-writer/CMakeFiles/gw-dumper.dir/depend -[ 88%] Building CXX object ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java && bash -c /usr/bin/jar\ -cf\ /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib/ngs-src.jar\ \ ngs/ErrorMsg.java\ ngs/Statistics.java\ ngs/Fragment.java\ ngs/FragmentIterator.java\ ngs/Read.java\ ngs/ReadIterator.java\ ngs/ReadGroup.java\ ngs/ReadGroupIterator.java\ ngs/Alignment.java\ ngs/AlignmentIterator.java\ ngs/PileupEvent.java\ ngs/PileupEventIterator.java\ ngs/Pileup.java\ ngs/PileupIterator.java\ ngs/Reference.java\ ngs/ReferenceIterator.java\ ngs/ReadCollection.java\ ngs/Package.java\ ngs/itf/Refcount.java\ ngs/itf/StatisticsItf.java\ ngs/itf/FragmentItf.java\ ngs/itf/FragmentIteratorItf.java\ ngs/itf/ReadItf.java\ ngs/itf/ReadIteratorItf.java\ ngs/itf/ReadGroupItf.java\ ngs/itf/ReadGroupIteratorItf.java\ ngs/itf/AlignmentItf.java\ ngs/itf/AlignmentIteratorItf.java\ ngs/itf/PileupEventItf.java\ ngs/itf/PileupEventIteratorItf.java\ ngs/itf/PileupItf.java\ ngs/itf/PileupIteratorItf.java\ ngs/itf/ReferenceItf.java\ ngs/itf/ReferenceIteratorItf.java\ ngs/itf/ReadCollectionItf.java\ gov/nih/nlm/ncbi/ngs/DownloadManager.java\ gov/nih/nlm/ncbi/ngs/FileCreator.java\ gov/nih/nlm/ncbi/ngs/HttpManager.java\ gov/nih/nlm/ncbi/ngs/LibDependencies.java\ gov/nih/nlm/ncbi/ngs/LibManager.java\ gov/nih/nlm/ncbi/ngs/LibPathIterator.java\ gov/nih/nlm/ncbi/ngs/LibVersionChecker.java\ gov/nih/nlm/ncbi/ngs/LMProperties.java\ gov/nih/nlm/ncbi/ngs/Logger.java\ gov/nih/nlm/ncbi/ngs/Manager.java\ gov/nih/nlm/ncbi/ngs/NGS.java\ gov/nih/nlm/ncbi/ngs/Version.java\ gov/nih/nlm/ncbi/ngs/error/LibraryLoadError.java\ gov/nih/nlm/ncbi/ngs/error/LibraryNotFoundError.java\ gov/nih/nlm/ncbi/ngs/error/LibraryIncompatibleVersionError.java\ gov/nih/nlm/ncbi/ngs/error/cause/ConnectionProblemCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/DownloadDisabledCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/InvalidLibraryCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/JvmErrorCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/LibraryLoadCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/OutdatedJarCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/PrereleaseReqLibCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/UnsupportedArchCause.java -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-c++\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o -MF CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o.d -o CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs-c++/NCBI-NGS.cpp -make -f ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/general-writer /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer/CMakeFiles/gw-dumper.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/build.make ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc && bash -c /usr/bin/jar\ -cf\ /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib/ngs-doc.jar\ . +[ 87%] Building Java objects for ngs-examples.jar +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/examples && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.30/Modules/UseJava/ClearClassFiles.cmake +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/examples && /usr/bin/javac -classpath :/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/examples:/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib:/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib/ngs-java.jar -d /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir @/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/java_sources +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 87%] Linking CXX static library ../../../lib/libncbi-ngs-c++.a +[ 87%] Built target ngs-doc-jar +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/cmake -P CMakeFiles/ncbi-ngs-c++.dir/cmake_clean_target.cmake +make -f libs/general-writer/CMakeFiles/gw-dumper.dir/build.make libs/general-writer/CMakeFiles/gw-dumper.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/general-writer /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer/CMakeFiles/gw-dumper.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs-c++.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f libs/general-writer/CMakeFiles/gw-dumper.dir/build.make libs/general-writer/CMakeFiles/gw-dumper.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 89%] Building Java objects for ngs-examples.jar -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/examples && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.30/Modules/UseJava/ClearClassFiles.cmake -[ 89%] Building CXX object libs/general-writer/CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o +/usr/bin/ar qc ../../../lib/libncbi-ngs-c++.a "CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" +[ 87%] Building CXX object libs/general-writer/CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o +/usr/bin/ranlib ../../../lib/libncbi-ngs-c++.a cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/general-writer/CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o -MF CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o.d -o CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/general-writer/gw-dumper.cpp -[ 89%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/kff/ffext.c -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/examples && /usr/bin/javac -classpath :/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/examples:/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib:/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib/ngs-java.jar -d /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir @/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/java_sources -[ 89%] Linking CXX executable ../../../test-bin/Test_Vdb_dump_view-alias -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Vdb_dump_view-alias.dir/link.txt --verbose=1 -[ 89%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/kff/ffkey.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && rm -f libncbi-ngs-c++.a.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && mv libncbi-ngs-c++.a libncbi-ngs-c++.a.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a.3.0.9 libncbi-ngs-c++.a.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a.3 libncbi-ngs-c++.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a libncbi-ngs-c++-static.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o" -o ../../../test-bin/Test_Vdb_dump_view-alias /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 89%] Built target vdb-dump-makedb +[ 87%] Built target ncbi-ngs-c++ make -f libs/general-writer/test/CMakeFiles/test-general-writer.dir/build.make libs/general-writer/test/CMakeFiles/test-general-writer.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/general-writer/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer/test/CMakeFiles/test-general-writer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f libs/general-writer/test/CMakeFiles/test-general-writer.dir/build.make libs/general-writer/test/CMakeFiles/test-general-writer.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 89%] Building CXX object libs/general-writer/test/CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 87%] Building CXX object libs/general-writer/test/CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/general-writer/test/CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o -MF CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o.d -o CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/general-writer/test/test-general-writer.cpp +[ 87%] Built target ngs-src-jar make -f tools/external/prefetch/CMakeFiles/prefetch.dir/build.make tools/external/prefetch/CMakeFiles/prefetch.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/prefetch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch/CMakeFiles/prefetch.dir/DependInfo.cmake "--color=" -make -f tools/external/vdb-config/CMakeFiles/vdb-config.dir/build.make tools/external/vdb-config/CMakeFiles/vdb-config.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/CMakeFiles/vdb-config.dir/DependInfo.cmake "--color=" -In file included from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/fmt.h:24, - from /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/loader-imp.c:100: -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v8::detail::value fmt::v8::detail::make_arg(const T&) [with bool IS_PACKED = true; Context = fmt::v8::basic_format_context; type = fmt::v8::detail::type::string_type; T = fmt::v8::basic_string_view; typename std::enable_if::type = 0]': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:1694:64: required from 'constexpr fmt::v8::format_arg_store::format_arg_store(const Args& ...) [with Context = fmt::v8::basic_format_context; Args = {fmt::v8::basic_string_view, char [3]}]' - 1692 | data_{detail::make_arg< - | ~~~~~~~~~~~~~~~~~ - 1693 | is_packed, Context, - | ~~~~~~~~~~~~~~~~~~~ - 1694 | detail::mapped_type_constant::value>(args)...} { - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:1710:18: required from 'OutputIt fmt::v8::format_to(OutputIt, format_string, T&& ...) [with OutputIt = appender; T = {basic_string_view&, const char (&)[3]}; typename std::enable_if::value, int>::type = 0; format_string = basic_format_string&, const char (&)[3]>]' - 1710 | return {args...}; - | ^ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/format-inl.h:74:14: required from here - 74 | format_to(it, FMT_STRING("{}{}"), message, SEP); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:2915:52: in 'constexpr' expansion of 'fmt::v8::make_format_args<>(((const fmt::v8::basic_string_view&)args#0), args#1)' -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:1566:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 1566 | const auto& arg = arg_mapper().map(val); - | ^~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:1566:46: note: the temporary was destroyed at the end of the full expression 'fmt::v8::detail::arg_mapper >().fmt::v8::detail::arg_mapper >::map >((* & val))' - 1566 | const auto& arg = arg_mapper().map(val); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/external/prefetch/CMakeFiles/prefetch.dir/build.make tools/external/prefetch/CMakeFiles/prefetch.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/vdb-config/CMakeFiles/vdb-config.dir/build.make tools/external/vdb-config/CMakeFiles/vdb-config.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 89%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/kfile-no-q.c.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 87%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/kfile-no-q.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/prefetch\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/kfile-no-q.c.o -MF CMakeFiles/prefetch.dir/kfile-no-q.c.o.d -o CMakeFiles/prefetch.dir/kfile-no-q.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/prefetch/kfile-no-q.c -[ 89%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/configure.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/configure.cpp.o -MF CMakeFiles/vdb-config.dir/configure.cpp.o.d -o CMakeFiles/vdb-config.dir/configure.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/configure.cpp -[ 89%] Built target Test_Vdb_dump_view-alias -[ 90%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o +[ 88%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfMain.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/prefetch\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfMain.c.o -MF CMakeFiles/prefetch.dir/PrfMain.c.o.d -o CMakeFiles/prefetch.dir/PrfMain.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/prefetch/PrfMain.c +[ 88%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/kff/ffext.c +[ 88%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-view-spec.c +[ 88%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/kff/ffkey.c +[ 88%] Linking CXX executable ../../../test-bin/Test_LOADERFILE +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_LOADERFILE.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o" -o ../../../test-bin/Test_LOADERFILE ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 88%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o +cd 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CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-helper.c +[ 88%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/json-parse.cpp +[ 89%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/kff/fileformat.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 89%] Built target Test_LOADERFILE +make -f tools/external/vdb-config/CMakeFiles/vdb-config.dir/build.make tools/external/vdb-config/CMakeFiles/vdb-config.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/CMakeFiles/vdb-config.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 90%] Built target ngs-src-jar -[ 90%] Built target ngs-doc-jar -make -f test/external/sra-info/CMakeFiles/Build-sra-info.dir/build.make test/external/sra-info/CMakeFiles/Build-sra-info.dir/depend +make -f tools/external/vdb-config/CMakeFiles/vdb-config.dir/build.make tools/external/vdb-config/CMakeFiles/vdb-config.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sra-info /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-info 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/configure.cpp.o -MF CMakeFiles/vdb-config.dir/configure.cpp.o.d -o CMakeFiles/vdb-config.dir/configure.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/configure.cpp +[ 89%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/prefetch\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o -MF CMakeFiles/prefetch.dir/prefetch.c.o.d -o CMakeFiles/prefetch.dir/prefetch.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/prefetch/prefetch.c +[ 89%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o +[ 89%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/copycat/kff/ffmagic.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/general-loader.dir/general-loader.cpp.o" "CMakeFiles/general-loader.dir/protocol-parser.cpp.o" "CMakeFiles/general-loader.dir/database-loader.cpp.o" "CMakeFiles/general-loader.dir/main.cpp.o" -o ../../../bin/general-loader ../../../ilib/libgeneral-writer.a ../../../ilib/libloader.a -lkapp ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/build-version.cpp +[ 89%] Linking CXX executable ../../test-bin/test-vdb +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vdb.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-vdb.dir/test-vdb.cpp.o" -o ../../test-bin/test-vdb -lkapp /usr/lib/x86_64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 89%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/driver-tool/tool-args.cpp +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/general-writer/test/test-general-writer.cpp: In function 'void ncbi::runTest(int, const char**, const char*, const char*)': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/general-writer/test/test-general-writer.cpp:271:20: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] + 271 | delete gw; + | ^~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/general-writer/test/test-general-writer.cpp:217:24: note: 'gw' was declared here + 217 | GeneralWriter *gw; + | ^~ +[ 89%] Linking CXX executable ../../../test-bin/Test_KFF +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_KFF.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/Test_KFF.dir/kfftest.cpp.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o -o ../../../test-bin/Test_KFF /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmagic +[ 90%] Linking CXX executable ../../../test-bin/test-vdb-config-model +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vdb-config-model.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o" -o ../../../test-bin/test-vdb-config-model /usr/lib/x86_64-linux-gnu/libkapp.a 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tools/external/vdb-config/CMakeFiles/vdb-config.dir/util.cpp.o -MF CMakeFiles/vdb-config.dir/util.cpp.o.d -o CMakeFiles/vdb-config.dir/util.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/util.cpp -[ 91%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfMain.c.o -[ 91%] Built target Build-sra-info -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/prefetch\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config.c.o -MF CMakeFiles/vdb-config.dir/vdb-config.c.o.d -o CMakeFiles/vdb-config.dir/vdb-config.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/vdb-config.c -[ 91%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/prefetch\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o -MF CMakeFiles/prefetch.dir/prefetch.c.o.d -o CMakeFiles/prefetch.dir/prefetch.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/prefetch/prefetch.c -[ 92%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o -MF CMakeFiles/vdb-config.dir/interactive2.cpp.o.d -o CMakeFiles/vdb-config.dir/interactive2.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/interactive2.cpp -[ 92%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfRetrier.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/prefetch\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfRetrier.c.o -MF CMakeFiles/prefetch.dir/PrfRetrier.c.o.d -o CMakeFiles/prefetch.dir/PrfRetrier.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/prefetch/PrfRetrier.c -[ 92%] Linking CXX static library ../../../lib/libncbi-ngs-c++.a -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/cmake -P CMakeFiles/ncbi-ngs-c++.dir/cmake_clean_target.cmake -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs-c++.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f general-loader.3.0.9 -/usr/bin/ar qc ../../../lib/libncbi-ngs-c++.a "CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv general-loader general-loader.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s general-loader.3.0.9 general-loader.3 -/usr/bin/ranlib ../../../lib/libncbi-ngs-c++.a -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s general-loader.3 general-loader -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && rm -f libncbi-ngs-c++.a.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && mv libncbi-ngs-c++.a libncbi-ngs-c++.a.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a.3.0.9 libncbi-ngs-c++.a.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a.3 libncbi-ngs-c++.a -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a libncbi-ngs-c++-static.a -[ 92%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfOutFile.c.o -[ 92%] Built target general-loader +make -f tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/build.make tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 90%] Generating CMakeFiles/ngs-examples.dir/java_class_filelist +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/examples && /usr/bin/cmake 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-context.c +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/spot-assembler.c.o -MF CMakeFiles/latf-load.dir/spot-assembler.c.o.d -o CMakeFiles/latf-load.dir/spot-assembler.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/spot-assembler.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd 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"../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" +[ 91%] Linking CXX executable ../../../test-bin/test-general-writer +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-general-writer.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o" -o ../../../test-bin/test-general-writer ../../../ilib/libgeneral-writer.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 91%] Linking CXX executable ../../../test-bin/Test_LOADER +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_LOADER.dir/link.txt --verbose=1 +[ 91%] Built target test-vdb-config-model +make -f ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/depend +/usr/bin/ranlib ../../lib/libngs-c++.a +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/Test_LOADER.dir/loadertest.cpp.o -o ../../../test-bin/Test_LOADER ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/DependInfo.cmake "--color=" +[ 91%] Linking CXX shared library ../../lib/libngs-c++.so +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-c++-shared.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && rm -f libngs-c++.a.3.0.9 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/build -/usr/bin/ranlib ../../lib/libngs-c++.a -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 92%] Linking CXX static library ../../lib/libncbi-ngs.a -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -P CMakeFiles/ncbi-ngs.dir/cmake_clean_target.cmake -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && rm -f libngs-c++.a.3.0.9 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && mv libngs-c++.a libngs-c++.a.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libngs-c++.so.3 -o ../../lib/libngs-c++.so.3.0.9 "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" "../ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o" ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libngs-c++.a.3.0.9 libngs-c++.a.3 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libngs-c++.a.3 libngs-c++.a cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libngs-c++.a libngs-c++-static.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/usr/bin/ar qc ../../lib/libncbi-ngs.a "dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" 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../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_symlink_library ../../lib/libngs-c++.so.3.0.9 ../../lib/libngs-c++.so.3 ../../lib/libngs-c++.so -[ 92%] Built target ngs-c++ +[ 91%] Linking CXX static library ../../lib/libncbi-ngs.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -P CMakeFiles/ncbi-ngs.dir/cmake_clean_target.cmake +[ 91%] Built target ngs-c++ make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=ngs-examples.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.30/Modules/UseJava/Symlinks.cmake +/usr/bin/ar qc ../../lib/libncbi-ngs.a "dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" 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"language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/build.make tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/depend +make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ngs-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 92%] Linking CXX shared library ../../lib/libncbi-ngs.so +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs-shared.dir/link.txt --verbose=1 +[ 92%] Built target test-general-writer +make -f tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/build.make tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/depend +[ 92%] Built target ngs-examples make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 92%] Built target ngs-c++-shared +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ngs-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/DependInfo.cmake "--color=" make -f test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -fPIC -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libncbi-ngs.so.3 -o ../../lib/libncbi-ngs.so.3.0.9 "dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" 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"../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" /usr/lib/x86_64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/build.make tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 93%] Linking CXX shared library ../../lib/libncbi-ngs.so -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs-shared.dir/link.txt --verbose=1 -/usr/bin/ranlib ../../lib/libncbi-ngs.a -[ 93%] Building CXX object tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ngs-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o -MF CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o.d -o CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ngs-pileup/ngs-pileup.cpp make -f test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/build -/usr/bin/c++ -fPIC -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libncbi-ngs.so.3 -o ../../lib/libncbi-ngs.so.3.0.9 "dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o" "../ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o" ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" /usr/lib/x86_64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 93%] Building CXX object test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o -MF CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o.d -o CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs-pileup/test-ngs-pileup.cpp +[ 92%] Built target Test_LOADER make -f test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build.make test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/depend +[ 92%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-writer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-writer.c.o -MF CMakeFiles/latf-load.dir/common-writer.c.o.d -o CMakeFiles/latf-load.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/common-writer.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/align /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/align /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/DependInfo.cmake "--color=" +[ 92%] Building CXX object tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ngs-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o -MF CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o.d -o CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ngs-pileup/ngs-pileup.cpp +[ 92%] Building CXX object test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o -MF CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o.d -o CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs-pileup/test-ngs-pileup.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build.make test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build -[ 93%] Linking CXX executable ../../../test-bin/Test_KFF make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_KFF.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/Test_KFF.dir/kfftest.cpp.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o 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-I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/usr/include/ncbi-vdb/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/../ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -MF CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o.d -o CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/align/pileup_estimator.cpp -[ 93%] Linking CXX executable ../../../test-bin/testAssemblyStatistics -cd 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/usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-coldefs.c cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && rm -f libncbi-ngs.a.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_symlink_library ../../lib/libngs-c++.so.3.0.9 ../../lib/libngs-c++.so.3 ../../lib/libngs-c++.so cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && mv libncbi-ngs.a libncbi-ngs.a.3.0.9 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_symlink_library ../../lib/libncbi-ngs.so.3.0.9 ../../lib/libncbi-ngs.so.3 ../../lib/libncbi-ngs.so cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs.a.3.0.9 libncbi-ngs.a.3 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs.a.3 libncbi-ngs.a cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs.a libncbi-ngs-static.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target Test_KFF -[ 93%] Built target ncbi-ngs make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 92%] Built target ncbi-ngs +[ 92%] Built target ngs-c++-shared make -f ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/depend -make -f ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/DependInfo.cmake "--color=" +[ 92%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/util.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/util.cpp.o -MF CMakeFiles/vdb-config.dir/util.cpp.o.d -o CMakeFiles/vdb-config.dir/util.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/util.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_symlink_library ../../lib/libncbi-ngs.so.3.0.9 ../../lib/libncbi-ngs.so.3 ../../lib/libncbi-ngs.so +[ 92%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/FragTest.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/FragTest.cpp.o -MF CMakeFiles/FragTest.dir/FragTest.cpp.o.d -o CMakeFiles/FragTest.dir/FragTest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples/FragTest.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 92%] Built target ncbi-ngs-shared +make -f ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target testAssemblyStatistics +make -f ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 92%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/AlignTest.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/AlignTest.cpp.o -MF CMakeFiles/AlignTest.dir/AlignTest.cpp.o.d -o CMakeFiles/AlignTest.dir/AlignTest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples/AlignTest.cpp +[ 92%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-dump/vdb-dump-str.c +[ 93%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/sequence-writer.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/sequence-writer.c.o -MF CMakeFiles/latf-load.dir/sequence-writer.c.o.d -o CMakeFiles/latf-load.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/sequence-writer.c [ 93%] Building CXX object tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/main.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ngs-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/main.cpp.o -MF CMakeFiles/ngs-pileup.dir/main.cpp.o.d -o CMakeFiles/ngs-pileup.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ngs-pileup/main.cpp +[ 93%] Linking CXX executable ../../../test-bin/Test_Vdb_dump_view-spec +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Vdb_dump_view-spec.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o" -o ../../../test-bin/Test_Vdb_dump_view-spec /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +[ 93%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-reader.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-reader.c.o -MF CMakeFiles/latf-load.dir/common-reader.c.o.d -o CMakeFiles/latf-load.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/common-reader.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 93%] Built target Test_Vdb_dump_view-spec make -f ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 93%] Linking CXX executable ../../../test-bin/FragTest cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragTest.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/FragTest.dir/FragTest.cpp.o -o ../../../test-bin/FragTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 93%] Linking CXX executable ../../../test-bin/AlignTest +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignTest.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/build +make -f ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 93%] Linking CXX executable ../../../test-bin/Test_Align_samextract +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Align_samextract.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/AlignTest.dir/AlignTest.cpp.o -o ../../../test-bin/AlignTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 93%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -MF CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o.d -o CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples/AlignSliceTest.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o" -o ../../../test-bin/Test_Align_samextract -lsam-extract /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 93%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-reader.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-reader.c.o -MF CMakeFiles/latf-load.dir/fastq-reader.c.o.d -o CMakeFiles/latf-load.dir/fastq-reader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/fastq-reader.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target ncbi-ngs-shared +[ 93%] Built target FragTest make -f ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 93%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/AlignTest.cpp.o -[ 93%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/FragTest.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/FragTest.cpp.o -MF CMakeFiles/FragTest.dir/FragTest.cpp.o.d -o CMakeFiles/FragTest.dir/FragTest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples/FragTest.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/AlignTest.cpp.o -MF CMakeFiles/AlignTest.dir/AlignTest.cpp.o.d -o CMakeFiles/AlignTest.dir/AlignTest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples/AlignTest.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/build +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 93%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -Note: ngs_test_lib_load.java uses unchecked or unsafe operations. -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -MF CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o.d -o CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples/AlignSliceTest.cpp -Note: Recompile with -Xlint:unchecked for details. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 93%] Built target Test_Align_samextract [ 94%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/PileupTest.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/PileupTest.cpp.o -MF CMakeFiles/PileupTest.dir/PileupTest.cpp.o.d -o CMakeFiles/PileupTest.dir/PileupTest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples/PileupTest.cpp -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/general-writer/test/test-general-writer.cpp: In function 'void ncbi::runTest(int, const char**, const char*, const char*)': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/general-writer/test/test-general-writer.cpp:271:20: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] - 271 | delete gw; - | ^~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/general-writer/test/test-general-writer.cpp:217:24: note: 'gw' was declared here - 217 | GeneralWriter *gw; - | ^~ -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/java_compiled_test-ngs-java -[ 94%] Linking CXX executable ../../../test-bin/Test_Drivertool_ToolArgs -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_ToolArgs.dir/link.txt --verbose=1 -[ 94%] Generating CMakeFiles/test-ngs-java.dir/java_class_filelist -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o" -o ../../../test-bin/Test_Drivertool_ToolArgs /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.30/Modules/UseJava/ClassFilelist.cmake make -f ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/depend +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/PileupTest.cpp.o -MF CMakeFiles/PileupTest.dir/PileupTest.cpp.o.d -o CMakeFiles/PileupTest.dir/PileupTest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples/PileupTest.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 94%] Built target AlignTest make -f ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/DependInfo.cmake "--color=" -[ 95%] Creating Java archive test-ngs-java.jar -[ 95%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/RefTest.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/RefTest.cpp.o -MF CMakeFiles/RefTest.dir/RefTest.cpp.o.d -o CMakeFiles/RefTest.dir/RefTest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples/RefTest.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib/test-ngs-java.jar @java_class_filelist +[ 94%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/testsource.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/testsource.cpp.o -MF CMakeFiles/test-general-loader.dir/testsource.cpp.o.d -o CMakeFiles/test-general-loader.dir/testsource.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/testsource.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 95%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/build +[ 94%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o -MF CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o.d -o CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/zz_fastq-grammar.c +[ 94%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -MF CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o.d -o CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples/DumpReferenceFASTA.cpp -[ 95%] Linking CXX executable ../../../test-bin/Test_LOADERFILE -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_LOADERFILE.dir/link.txt --verbose=1 -[ 95%] Linking CXX executable ../../../test-bin/test-general-writer -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-general-writer.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o" -o ../../../test-bin/Test_LOADERFILE ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c: In function 'sqlite3SelectNew': +[ 94%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/RefTest.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/RefTest.cpp.o -MF CMakeFiles/RefTest.dir/RefTest.cpp.o.d -o CMakeFiles/RefTest.dir/RefTest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk/examples/RefTest.cpp +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:115649:10: warning: function may return address of local variable [-Wreturn-local-addr] +115649 | return pNew; + | ^~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:115609:10: note: declared here +115609 | Select standin; + | ^~~~~~~ +[ 94%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfRetrier.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/prefetch\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfRetrier.c.o -MF CMakeFiles/prefetch.dir/PrfRetrier.c.o.d -o CMakeFiles/prefetch.dir/PrfRetrier.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/prefetch/PrfRetrier.c +[ 94%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfOutFile.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/prefetch\" -Dx86_64 -I/usr/include/ncbi-vdb 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/usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config.c.o -MF CMakeFiles/vdb-config.dir/vdb-config.c.o.d -o CMakeFiles/vdb-config.dir/vdb-config.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/vdb-config.c +[ 94%] Linking CXX executable ../../../bin/ngs-pileup +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-pileup.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o" "CMakeFiles/ngs-pileup.dir/main.cpp.o" -o ../../../bin/ngs-pileup ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a ../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +[ 94%] Linking CXX executable ../../../test-bin/AlignSliceTest +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignSliceTest.dir/link.txt --verbose=1 +[ 94%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-lex.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-misleading-indentation -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-lex.c.o -MF CMakeFiles/latf-load.dir/zz_fastq-lex.c.o.d -o CMakeFiles/latf-load.dir/zz_fastq-lex.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/zz_fastq-lex.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -o ../../../test-bin/AlignSliceTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 94%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/id2name.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/id2name.c.o -MF CMakeFiles/latf-load.dir/id2name.c.o.d -o CMakeFiles/latf-load.dir/id2name.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/id2name.c +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/testsource.cpp: In constructor 'TestSource::Buffer::Buffer(const std::string&, uint32_t, uint32_t, bool)': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/testsource.cpp:52:13: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 8 equals destination size [-Wstringop-truncation] + 52 | strncpy ( m_header . dad . signature, p_signature . c_str(), sizeof m_header . dad . signature ); + | ^ +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f ngs-pileup.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv ngs-pileup ngs-pileup.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ngs-pileup.3.0.9 ngs-pileup.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ngs-pileup.3 ngs-pileup make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 95%] Linking CXX executable ../../../test-bin/Test_VdbValidate_Unit -[ 95%] Linking CXX executable ../../../test-bin/Test_LOADER -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o" -o ../../../test-bin/test-general-writer ../../../ilib/libgeneral-writer.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_LOADER.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-validate && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_VdbValidate_Unit.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o" -o ../../../test-bin/Test_VdbValidate_Unit /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/Test_LOADER.dir/loadertest.cpp.o -o ../../../test-bin/Test_LOADER ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -[ 95%] Built target Test_Drivertool_ToolArgs +[ 94%] Linking CXX executable ../../../test-bin/RefTest +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/RefTest.dir/link.txt --verbose=1 +[ 94%] Built target ngs-pileup make -f libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/depend +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/RefTest.dir/RefTest.cpp.o -o ../../../test-bin/RefTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/DependInfo.cmake "--color=" +[ 94%] Linking CXX executable ../../../test-bin/DumpReferenceFASTA +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/DumpReferenceFASTA.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 95%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/ngstest.cpp.o +[ 94%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-loader.c.o +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -o ../../../test-bin/DumpReferenceFASTA ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-loader.c.o -MF CMakeFiles/latf-load.dir/fastq-loader.c.o.d -o CMakeFiles/latf-load.dir/fastq-loader.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/fastq-loader.c +[ 94%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/ngstest.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/ngstest.cpp.o -MF CMakeFiles/test-ngs.dir/ngstest.cpp.o.d -o CMakeFiles/test-ngs.dir/ngstest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target Test_LOADERFILE +[ 94%] Built target AlignSliceTest make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target Test_LOADER -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target Test_VdbValidate_Unit +[ 94%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o -MF CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o.d -o CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_sra.cpp +[ 94%] Linking CXX executable ../../../test-bin/PileupTest +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/PileupTest.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/PileupTest.dir/PileupTest.cpp.o -o ../../../test-bin/PileupTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 94%] Built target DumpReferenceFASTA make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/depend -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/DependInfo.cmake "--color=" +[ 94%] Built target RefTest +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/DependInfo.cmake "--color=" -[ 95%] Built target test-general-writer -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/depend make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/build -[ 95%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o -MF CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o.d -o CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_sra.cpp -[ 95%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 94%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o -MF CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o.d -o CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_sradb.cpp -[ 95%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/build +[ 94%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o -MF CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o.d -o CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 94%] Linking C executable ../../../bin/prefetch +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cmake -E cmake_link_script CMakeFiles/prefetch.dir/link.txt --verbose=1 +[ 94%] Built target PileupTest +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/DependInfo.cmake "--color=" +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/prefetch.dir/kfile-no-q.c.o" CMakeFiles/prefetch.dir/PrfMain.c.o CMakeFiles/prefetch.dir/prefetch.c.o CMakeFiles/prefetch.dir/PrfRetrier.c.o CMakeFiles/prefetch.dir/PrfOutFile.c.o -o ../../../bin/prefetch ../../../ilib/libascp.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 95%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o +[ 94%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/loader-imp.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/loader-imp.c.o -MF CMakeFiles/latf-load.dir/loader-imp.c.o.d -o CMakeFiles/latf-load.dir/loader-imp.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/loader-imp.c +[ 94%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o -MF CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o.d -o CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_readcollection.cpp +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/loader-imp.c: In function 'WriteLoaderSignature': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/fastq-loader/loader-imp.c:180:48: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 180 | rc = KLoaderMeta_Write(node, progName, __DATE__, "FASTQ", KAppVersion()); + | ^~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f prefetch.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv prefetch prefetch.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s prefetch.3.0.9 prefetch.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s prefetch.3 prefetch +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.0.9 prefetch-driver +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 94%] Built target prefetch make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 95%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o +[ 94%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o -MF CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o.d -o CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/examples && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/java_compiled_ngs-examples -[ 95%] Generating CMakeFiles/ngs-examples.dir/java_class_filelist -[ 95%] Linking CXX executable ../../../test-bin/AlignSliceTest -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignSliceTest.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-java/examples && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.30/Modules/UseJava/ClassFilelist.cmake -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -o ../../../test-bin/AlignSliceTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 95%] Creating Java archive ngs-examples.jar -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib/ngs-examples.jar @java_class_filelist -[ 95%] Linking CXX executable ../../../test-bin/SlowTest_FastqLoader_id2name -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/SlowTest_FastqLoader_id2name.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o" -o ../../../test-bin/SlowTest_FastqLoader_id2name ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=test-ngs-java.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.30/Modules/UseJava/Symlinks.cmake -[ 95%] Linking CXX executable ../../../test-bin/AlignTest -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignTest.dir/link.txt --verbose=1 +[ 95%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o -MF CMakeFiles/vdb-config.dir/interactive2.cpp.o.d -o CMakeFiles/vdb-config.dir/interactive2.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/interactive2.cpp +[ 95%] Linking C executable ../../../bin/latf-load +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/latf-load.dir/link.txt --verbose=1 +/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/latf-load.dir/spot-assembler.c.o" "CMakeFiles/latf-load.dir/common-writer.c.o" "CMakeFiles/latf-load.dir/sequence-writer.c.o" "CMakeFiles/latf-load.dir/common-reader.c.o" "CMakeFiles/latf-load.dir/fastq-reader.c.o" "CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o" "CMakeFiles/latf-load.dir/zz_fastq-lex.c.o" "CMakeFiles/latf-load.dir/id2name.c.o" "CMakeFiles/latf-load.dir/fastq-loader.c.o" "CMakeFiles/latf-load.dir/loader-imp.c.o" -o ../../../bin/latf-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +[ 95%] Linking CXX executable ../../../test-bin/test-ngs +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs.dir/ngstest.cpp.o" -o ../../../test-bin/test-ngs -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f latf-load.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv latf-load latf-load.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s latf-load.3.0.9 latf-load.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s latf-load.3 latf-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/AlignTest.dir/AlignTest.cpp.o -o ../../../test-bin/AlignTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 95%] Linking CXX executable ../../../test-bin/FragTest -[ 95%] Linking C executable ../../../bin/prefetch -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragTest.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cmake -E cmake_link_script CMakeFiles/prefetch.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/FragTest.dir/FragTest.cpp.o -o ../../../test-bin/FragTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -/usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/prefetch.dir/kfile-no-q.c.o" CMakeFiles/prefetch.dir/PrfMain.c.o CMakeFiles/prefetch.dir/prefetch.c.o CMakeFiles/prefetch.dir/PrfRetrier.c.o CMakeFiles/prefetch.dir/PrfOutFile.c.o -o ../../../bin/prefetch ../../../ilib/libascp.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 95%] Built target test-ngs-java +[ 95%] Built target latf-load make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/DependInfo.cmake "--color=" +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/depend make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/DependInfo.cmake "--color=" make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f prefetch.3.0.9 +[ 95%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -MF CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o.d -o CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/vdb-config/vdb-config-model.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv prefetch prefetch.3.0.9 +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' [ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o -MF CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o.d -o CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_pileup.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s prefetch.3.0.9 prefetch.3 -[ 96%] Linking CXX executable ../../../test-bin/RefTest -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s prefetch.3 prefetch -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/RefTest.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.0.9 prefetch-driver -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/depend make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/DependInfo.cmake "--color=" -[ 96%] Built target SlowTest_FastqLoader_id2name -[ 96%] Linking CXX executable ../../../test-bin/DumpReferenceFASTA +[ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o -MF CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o.d -o CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_reference.cpp +[ 96%] Built target test-ngs make -f libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/depend -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/DumpReferenceFASTA.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/RefTest.dir/RefTest.cpp.o -o ../../../test-bin/RefTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/build -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -o ../../../test-bin/DumpReferenceFASTA ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 96%] Linking CXX executable ../../../test-bin/PileupTest -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/PileupTest.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' [ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o -[ 96%] Built target AlignSliceTest -make -f libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/depend cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o -MF CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o.d -o CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_fragmentblob.cpp +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function 'void CSRA1_NGS_ReferenceWindow_Slice_Filtered::Instance::test_method()': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:591:196: note: '#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.' + 591 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) + | ^ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function 'void CSRA1_NGS_ReferenceGetFilteredAlignmentSlice_Wraparound::Instance::test_method()': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:669:196: note: '#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.' + 669 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) + | ^ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function 'void CSRA1_NGS_ReferenceGetFilteredAlignmentSlice_Wraparound_StartInWindow::Instance::test_method()': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:696:196: note: '#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.' + 696 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) + | ^ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function 'void CSRA1_NGS_ReferenceGetFilteredAlignmentSlice_NoWraparound::Instance::test_method()': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:719:196: note: '#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.' + 719 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) + | ^ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function 'void CSRA1_NGS_ReferenceGetFilteredAlignmentSlice_NoWraparound_StartInWindow::Instance::test_method()': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:740:196: note: '#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.' + 740 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) + | ^ +[ 96%] Linking CXX executable ../../bin/gw-dumper +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/cmake -E cmake_link_script CMakeFiles/gw-dumper.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o" -o ../../bin/gw-dumper ../../ilib/libgeneral-writer.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target gw-dumper +make -f libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/PileupTest.dir/PileupTest.cpp.o -o ../../../test-bin/PileupTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o -MF CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o.d -o CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_reference.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 96%] Linking CXX executable ../../../bin/ngs-pileup make -f libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/build -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-pileup.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o" "CMakeFiles/ngs-pileup.dir/main.cpp.o" -o ../../../bin/ngs-pileup ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a ../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -[ 96%] Built target prefetch -make -f libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/depend [ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o -MF CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o.d -o CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_referenceblob.cpp +[ 96%] Linking CXX executable ../../../test-bin/Test_Ngs_Pileup +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Ngs_Pileup.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o" -o ../../../test-bin/Test_Ngs_Pileup ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a ../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 96%] Linking CXX executable ../../../../test-bin/test-general-loader +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-general-loader.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o" "CMakeFiles/test-general-loader.dir/testsource.cpp.o" -o ../../../../test-bin/test-general-loader ../../../../ilib/libgeneral-writer.a -lkapp -lktst ../../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +[ 96%] Built target Test_Ngs_Pileup +make -f libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 96%] Linking CXX executable ../../../test-bin/test-ngs [ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o -MF CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o.d -o CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_byteblob.cpp -[ 96%] Built target AlignTest make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/DependInfo.cmake "--color=" -[ 96%] Built target FragTest -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/depend -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs.dir/ngstest.cpp.o" -o ../../../test-bin/test-ngs -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target test-general-loader [ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o -MF CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o.d -o CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/SRAtest.cpp +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' [ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o -MF CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o.d -o CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/SRADBtest.cpp +[ 96%] Linking CXX executable ../../../test-bin/SlowTest_Align_estimator +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/SlowTest_Align_estimator.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -o ../../../test-bin/SlowTest_Align_estimator ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm ../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target SlowTest_Align_estimator make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/DependInfo.cmake "--color=" -[ 96%] Built target DumpReferenceFASTA +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o -MF CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o.d -o CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/CSRA1test.cpp make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/DependInfo.cmake "--color=" -[ 96%] Built target RefTest -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/build +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o -MF CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o.d -o CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/CSRA1PileupTest.cpp +[ 96%] Linking CXX executable ../../../bin/vdb-config +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-config.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/vdb-config.dir/configure.cpp.o" "CMakeFiles/vdb-config.dir/util.cpp.o" "CMakeFiles/vdb-config.dir/vdb-config.c.o" "CMakeFiles/vdb-config.dir/interactive2.cpp.o" "CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o" -o ../../../bin/vdb-config ../../../ilib/libtui_cpp.a ../../../ilib/libtui.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-config.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-config vdb-config.3.0.9 +[ 96%] Linking CXX executable ../../../test-bin/Test_Drivertool_RunSource +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_RunSource.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-config.3.0.9 vdb-config.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-config.3 vdb-config +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/cmake -E copy /usr/include/ncbi-vdb/kfg/ncbi/default.kfg /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/ncbi/default.kfg +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o" -o ../../../test-bin/Test_Drivertool_RunSource /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=ngs-examples.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.30/Modules/UseJava/Symlinks.cmake -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/build +[ 96%] Built target vdb-config +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o -MF CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o.d -o CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/CSRA1test.cpp make -f libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o -MF CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o.d -o CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/CSRA1PileupTest.cpp [ 96%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o -MF CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o.d -o CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/test-ngs-vdb.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f ngs-pileup.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv ngs-pileup ngs-pileup.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ngs-pileup.3.0.9 ngs-pileup.3 -[ 96%] Built target test-ngs -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ngs-pileup.3 ngs-pileup +[ 96%] Built target Test_Drivertool_RunSource make -f tools/external/ref-variation/CMakeFiles/ref-variation.dir/build.make tools/external/ref-variation/CMakeFiles/ref-variation.dir/depend -[ 96%] Built target ngs-examples -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ref-variation /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation/CMakeFiles/ref-variation.dir/DependInfo.cmake "--color=" -make -f tools/external/ref-variation/CMakeFiles/var-expand.dir/build.make tools/external/ref-variation/CMakeFiles/var-expand.dir/depend -[ 96%] Built target PileupTest -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function 'void CSRA1_NGS_ReferenceWindow_Slice_Filtered::Instance::test_method()': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:591:196: note: '#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.' - 591 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) - | ^ -make -f tools/external/sra-search/CMakeFiles/sra-search.dir/build.make tools/external/sra-search/CMakeFiles/sra-search.dir/depend +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/ref-variation/CMakeFiles/ref-variation.dir/build.make tools/external/ref-variation/CMakeFiles/ref-variation.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/CMakeFiles/sra-search.dir/DependInfo.cmake "--color=" +[ 96%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/common.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ref-variation\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/common.cpp.o -MF CMakeFiles/ref-variation.dir/common.cpp.o.d -o CMakeFiles/ref-variation.dir/common.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ref-variation/common.cpp +[ 96%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/helper.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ref-variation\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/helper.cpp.o -MF CMakeFiles/ref-variation.dir/helper.cpp.o.d -o CMakeFiles/ref-variation.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ref-variation/helper.cpp +[ 96%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ref-variation\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o -MF CMakeFiles/ref-variation.dir/ref-variation.cpp.o.d -o CMakeFiles/ref-variation.dir/ref-variation.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ref-variation/ref-variation.cpp +[ 96%] Linking CXX executable ../../../test-bin/test-fragmentblob +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fragmentblob.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o" -o ../../../test-bin/test-fragmentblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c: In function 'sqlite3VdbeExpandSql': +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:77729:10: warning: function may return address of local variable [-Wreturn-local-addr] +77729 | return sqlite3StrAccumFinish(&out); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here +77625 | char zBase[100]; /* Initial working space */ + | ^~~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:77729:10: warning: function may return address of local variable [-Wreturn-local-addr] +77729 | return sqlite3StrAccumFinish(&out); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here +77625 | char zBase[100]; /* Initial working space */ + | ^~~~~ +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here +/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here +[ 96%] Linking CXX executable ../../../test-bin/test-byteblob +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-byteblob.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o" -o ../../../test-bin/test-byteblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target test-fragmentblob +make -f tools/external/ref-variation/CMakeFiles/var-expand.dir/build.make tools/external/ref-variation/CMakeFiles/var-expand.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ref-variation /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation/CMakeFiles/var-expand.dir/DependInfo.cmake "--color=" -[ 96%] Built target ngs-pileup make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/ref-variation/CMakeFiles/ref-variation.dir/build.make tools/external/ref-variation/CMakeFiles/ref-variation.dir/build -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function 'void CSRA1_NGS_ReferenceGetFilteredAlignmentSlice_Wraparound::Instance::test_method()': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:669:196: note: '#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.' - 669 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) - | ^ -make -f tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/build.make tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/depend +make -f tools/external/ref-variation/CMakeFiles/var-expand.dir/build.make tools/external/ref-variation/CMakeFiles/var-expand.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 96%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/common.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/var-expand\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/common.cpp.o -MF CMakeFiles/var-expand.dir/common.cpp.o.d -o CMakeFiles/var-expand.dir/common.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ref-variation/common.cpp +[ 96%] Linking CXX executable ../../../test-bin/Test_SraInfo_Unit +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraInfo_Unit.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o" -o ../../../test-bin/Test_SraInfo_Unit /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target test-byteblob +make -f tools/external/sra-search/CMakeFiles/sra-search.dir/build.make tools/external/sra-search/CMakeFiles/sra-search.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/DependInfo.cmake "--color=" -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function 'void CSRA1_NGS_ReferenceGetFilteredAlignmentSlice_Wraparound_StartInWindow::Instance::test_method()': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:696:196: note: '#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.' - 696 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) - | ^ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function 'void CSRA1_NGS_ReferenceGetFilteredAlignmentSlice_NoWraparound::Instance::test_method()': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:719:196: note: '#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.' - 719 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) - | ^ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function 'void CSRA1_NGS_ReferenceGetFilteredAlignmentSlice_NoWraparound_StartInWindow::Instance::test_method()': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:740:196: note: '#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.' - 740 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) - | ^ +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/CMakeFiles/sra-search.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/external/sra-search/CMakeFiles/sra-search.dir/build.make tools/external/sra-search/CMakeFiles/sra-search.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 96%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/main.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/main.cpp.o -MF CMakeFiles/sra-search.dir/main.cpp.o.d -o CMakeFiles/sra-search.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/main.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/ref-variation/CMakeFiles/var-expand.dir/build.make tools/external/ref-variation/CMakeFiles/var-expand.dir/build +[ 96%] Built target Test_SraInfo_Unit +make -f tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/build.make tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 96%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/common.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ref-variation\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/common.cpp.o -MF CMakeFiles/ref-variation.dir/common.cpp.o.d -o CMakeFiles/ref-variation.dir/common.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ref-variation/common.cpp -[ 96%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/main.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/build.make tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/main.cpp.o -MF CMakeFiles/sra-search.dir/main.cpp.o.d -o CMakeFiles/sra-search.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/main.cpp [ 96%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/test-sra-search.cpp.o -[ 96%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/common.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/test-sra-search.cpp.o -MF CMakeFiles/test-sra-search.dir/test-sra-search.cpp.o.d -o CMakeFiles/test-sra-search.dir/test-sra-search.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/test-sra-search.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/var-expand\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/common.cpp.o -MF CMakeFiles/var-expand.dir/common.cpp.o.d -o CMakeFiles/var-expand.dir/common.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ref-variation/common.cpp -[ 96%] Linking CXX executable ../../../test-bin/Test_Align_samextract -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Align_samextract.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o" -o ../../../test-bin/Test_Align_samextract -lsam-extract /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 96%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o -MF CMakeFiles/sra-search.dir/searchblock.cpp.o.d -o CMakeFiles/sra-search.dir/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/searchblock.cpp -[ 96%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/helper.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ref-variation\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/helper.cpp.o -MF CMakeFiles/ref-variation.dir/helper.cpp.o.d -o CMakeFiles/ref-variation.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ref-variation/helper.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' [ 96%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/helper.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/var-expand\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/helper.cpp.o -MF CMakeFiles/var-expand.dir/helper.cpp.o.d -o CMakeFiles/var-expand.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ref-variation/helper.cpp -[ 96%] Built target Test_Align_samextract +[ 96%] Linking CXX executable ../../../bin/ref-variation +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/cmake -E cmake_link_script CMakeFiles/ref-variation.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/ref-variation.dir/common.cpp.o" "CMakeFiles/ref-variation.dir/helper.cpp.o" "CMakeFiles/ref-variation.dir/ref-variation.cpp.o" -o ../../../bin/ref-variation ../../../ilib/libtk-version.a -lkapp ../../../ilib/libngs-vdb.a ../../../lib/libncbi-ngs.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +[ 96%] Linking CXX executable ../../../test-bin/test-ngs_csra1pileup++ +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1pileup++.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o" -o ../../../test-bin/test-ngs_csra1pileup++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a [ 96%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/var-expand.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/var-expand\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/var-expand.cpp.o -MF CMakeFiles/var-expand.dir/var-expand.cpp.o.d -o CMakeFiles/var-expand.dir/var-expand.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ref-variation/var-expand.cpp -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v8::detail::value fmt::v8::detail::make_arg(const T&) [with bool IS_PACKED = true; Context = fmt::v8::basic_format_context; type = fmt::v8::detail::type::string_type; T = std::__cxx11::basic_string; typename std::enable_if::type = 0]': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:1694:64: required from 'constexpr fmt::v8::format_arg_store::format_arg_store(const Args& ...) [with Context = fmt::v8::basic_format_context; Args = {std::__cxx11::basic_string, std::allocator >, spdlog::stopwatch, long unsigned int}]' - 1692 | data_{detail::make_arg< - | ~~~~~~~~~~~~~~~~~ - 1693 | is_packed, Context, - | ~~~~~~~~~~~~~~~~~~~ - 1694 | detail::mapped_type_constant::value>(args)...} { - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:1710:18: required from 'void spdlog::logger::log_(spdlog::source_loc, spdlog::level::level_enum, spdlog::string_view_t, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int}; spdlog::string_view_t = fmt::v8::basic_string_view]' - 1710 | return {args...}; - | ^ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/logger.h:90:13: required from 'void spdlog::logger::log(spdlog::source_loc, spdlog::level::level_enum, fmt::v8::format_string, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int}; fmt::v8::format_string = fmt::v8::basic_format_string, std::allocator >&, spdlog::stopwatch&, long unsigned int>]' - 90 | log_(loc, lvl, fmt, std::forward(args)...); - | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/logger.h:96:12: required from 'void spdlog::logger::log(spdlog::level::level_enum, fmt::v8::format_string, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int}; fmt::v8::format_string = fmt::v8::basic_format_string, std::allocator >&, spdlog::stopwatch&, long unsigned int>]' - 96 | log(source_loc{}, lvl, fmt, std::forward(args)...); - | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/logger.h:158:12: required from 'void spdlog::logger::info(fmt::v8::format_string, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, spdlog::stopwatch&, long unsigned int}; fmt::v8::format_string = fmt::v8::basic_format_string, std::allocator >&, spdlog::stopwatch&, long unsigned int>]' - 158 | log(level::info, fmt, std::forward(args)...); - | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/spdlog.h:157:31: required from 'void spdlog::info(fmt::v8::format_string, Args&& ...) [with Args = {const std::__cxx11::basic_string, std::allocator >&, stopwatch&, long unsigned int}; fmt::v8::format_string = fmt::v8::basic_format_string, std::allocator >&, stopwatch&, long unsigned int>]' - 157 | default_logger_raw()->info(fmt, std::forward(args)...); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/spot_assembly.hpp:386:21: required from here - 386 | spdlog::info("{} Batch insert: {:.3}, {:L} reads", batch_idx, sw, new_batch.m_spot_map->size()); - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/logger.h:370:68: in 'constexpr' expansion of 'fmt::v8::make_format_args<>(args#0, ((const spdlog::stopwatch&)args#1), ((const long unsigned int&)args#2))' -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:1566:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 1566 | const auto& arg = arg_mapper().map(val); - | ^~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/bam-loader/./spdlog/fmt/bundled/core.h:1566:46: note: the temporary was destroyed at the end of the full expression 'fmt::v8::detail::arg_mapper >().fmt::v8::detail::arg_mapper >::map >((* & val))' - 1566 | const auto& arg = arg_mapper().map(val); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ -[ 96%] Linking CXX executable ../../../test-bin/Test_Vdb_dump_view-spec -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Vdb_dump_view-spec.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o" -o ../../../test-bin/Test_Vdb_dump_view-spec /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f ref-variation.3.0.9 +[ 96%] Linking CXX executable ../../../test-bin/test-ngs_csra1_pileup +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_pileup.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv ref-variation ref-variation.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ref-variation.3.0.9 ref-variation.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ref-variation.3 ref-variation +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o" -o ../../../test-bin/test-ngs_csra1_pileup -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target ref-variation make -f tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/build.make tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/depend +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/DependInfo.cmake "--color=" +[ 96%] Built target test-ngs_csra1pileup++ +make -f tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/build.make tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/depend make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/DependInfo.cmake "--color=" make -f tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/build.make tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/build.make tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/build [ 96%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/test-sra-search-slow.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/test-sra-search-slow.cpp.o -MF CMakeFiles/test-sra-search-slow.dir/test-sra-search-slow.cpp.o.d -o CMakeFiles/test-sra-search-slow.dir/test-sra-search-slow.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/test-sra-search-slow.cpp -[ 96%] Built target Test_Vdb_dump_view-spec -[ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/vdb-search.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/vdb-search.cpp.o -MF CMakeFiles/test-sra-search-slow.dir/__/vdb-search.cpp.o.d -o CMakeFiles/test-sra-search-slow.dir/__/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/vdb-search.cpp -[ 97%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastqLoader -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/link.txt --verbose=1 -[ 97%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastqParse -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastqParse.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastqParse ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastqLoader ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -make -f tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/build.make tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/DependInfo.cmake "--color=" -[ 97%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ref-variation\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o -MF CMakeFiles/ref-variation.dir/ref-variation.cpp.o.d -o CMakeFiles/ref-variation.dir/ref-variation.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ref-variation/ref-variation.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/build.make tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 97%] Linking CXX executable ../../../bin/vdb-config -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-config.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/vdb-config.dir/configure.cpp.o" "CMakeFiles/vdb-config.dir/util.cpp.o" "CMakeFiles/vdb-config.dir/vdb-config.c.o" "CMakeFiles/vdb-config.dir/interactive2.cpp.o" "CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o" -o ../../../bin/vdb-config ../../../ilib/libtui_cpp.a ../../../ilib/libtui.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/test-searchblock.cpp.o +[ 96%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/test-searchblock.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/test-searchblock.cpp.o -MF CMakeFiles/test-searchblock.dir/test-searchblock.cpp.o.d -o CMakeFiles/test-searchblock.dir/test-searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/test-searchblock.cpp -[ 97%] Linking CXX executable ../../bin/gw-dumper -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/cmake -E cmake_link_script CMakeFiles/gw-dumper.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o" -o ../../bin/gw-dumper ../../ilib/libgeneral-writer.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target Test_FastqLoader_WbFastqLoader -[ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/vdb-search.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/vdb-search.cpp.o -MF CMakeFiles/test-sra-search.dir/__/vdb-search.cpp.o.d -o CMakeFiles/test-sra-search.dir/__/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/vdb-search.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-config.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-config vdb-config.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-config.3.0.9 vdb-config.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-config.3 vdb-config -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/cmake -E copy /usr/include/ncbi-vdb/kfg/ncbi/default.kfg /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/ncbi/default.kfg +[ 96%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o -MF CMakeFiles/sra-search.dir/searchblock.cpp.o.d -o CMakeFiles/sra-search.dir/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/searchblock.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target test-ngs_csra1_pileup make -f tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/build.make tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/pileup-stats /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pileup-stats /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target vdb-config -[ 97%] Built target Test_FastqLoader_WbFastqParse -[ 97%] Built target gw-dumper -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/build.make tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/__/searchblock.cpp.o -[ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/searchblock.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/__/searchblock.cpp.o -MF CMakeFiles/test-searchblock.dir/__/searchblock.cpp.o.d -o CMakeFiles/test-searchblock.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/searchblock.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/searchblock.cpp.o -MF CMakeFiles/test-sra-search.dir/__/searchblock.cpp.o.d -o CMakeFiles/test-sra-search.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/searchblock.cpp -[ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/searchblock.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/searchblock.cpp.o -MF CMakeFiles/test-sra-search-slow.dir/__/searchblock.cpp.o.d -o CMakeFiles/test-sra-search-slow.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/searchblock.cpp -[ 97%] Building CXX object tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o +[ 96%] Building CXX object tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pileup-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o -MF CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o.d -o CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/test-tools/pileup-stats/pileup-stats.cpp -[ 97%] Linking CXX executable ../../../test-bin/Test_Drivertool_FilePath -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_FilePath.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o" -o ../../../test-bin/Test_Drivertool_FilePath /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 97%] Linking CXX executable ../../../bin/var-expand +[ 96%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o -MF CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp +[ 96%] Linking CXX executable ../../../bin/var-expand cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/cmake -E cmake_link_script CMakeFiles/var-expand.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/var-expand.dir/common.cpp.o" "CMakeFiles/var-expand.dir/helper.cpp.o" "CMakeFiles/var-expand.dir/var-expand.cpp.o" -o ../../../bin/var-expand ../../../ilib/libtk-version.a -lkapp ../../../ilib/libngs-vdb.a ../../../lib/libncbi-ngs.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f var-expand.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv var-expand var-expand.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s var-expand.3.0.9 var-expand.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s var-expand.3 var-expand make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 97%] Linking CXX executable ../../../test-bin/Test_Ngs_Pileup -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Ngs_Pileup.dir/link.txt --verbose=1 -[ 97%] Built target Test_Drivertool_FilePath +[ 96%] Built target var-expand make -f test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/build.make test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/testy-the-bear /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/testy-the-bear /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o" -o ../../../test-bin/Test_Ngs_Pileup ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a ../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/build.make test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 97%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o -[ 97%] Linking CXX executable ../../../test-bin/SlowTest_Align_estimator -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/internal/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/SlowTest_Align_estimator.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o -MF CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp -[ 97%] Building CXX object test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o +[ 96%] Building CXX object test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/testy-the-bear && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/ngs/testy-the-bear\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.0.9+dfsg -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o -MF CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o.d -o CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs/testy-the-bear/testy-the-bear.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -o ../../../test-bin/SlowTest_Align_estimator ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm ../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/blobmatchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/blobmatchiterator.cpp.o -MF CMakeFiles/test-sra-search-slow.dir/__/blobmatchiterator.cpp.o.d -o CMakeFiles/test-sra-search-slow.dir/__/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/blobmatchiterator.cpp -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f var-expand.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv var-expand var-expand.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s var-expand.3.0.9 var-expand.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s var-expand.3 var-expand -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 97%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o +[ 96%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o -MF CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/blobmatchiterator.cpp -[ 97%] Built target var-expand -[ 97%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o +[ 96%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/__/searchblock.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-searchblock.dir/__/searchblock.cpp.o -MF CMakeFiles/test-searchblock.dir/__/searchblock.cpp.o.d -o CMakeFiles/test-searchblock.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/searchblock.cpp +[ 96%] Linking CXX executable ../../../../test-bin/testy-the-bear +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/testy-the-bear && /usr/bin/cmake -E cmake_link_script CMakeFiles/testy-the-bear.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o" -o ../../../../test-bin/testy-the-bear /usr/lib/x86_64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a ../../../../lib/libncbi-ngs-c++.a ../../../../lib/libncbi-ngs.a ../../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 96%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o -MF CMakeFiles/sra-search.dir/referencematchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/referencematchiterator.cpp -[ 97%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o -MF CMakeFiles/sra-search.dir/vdb-search.cpp.o.d -o CMakeFiles/sra-search.dir/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/vdb-search.cpp -[ 97%] Built target Test_Ngs_Pileup -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 97%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/fragmentmatchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/fragmentmatchiterator.cpp.o -MF CMakeFiles/test-sra-search-slow.dir/__/fragmentmatchiterator.cpp.o.d -o CMakeFiles/test-sra-search-slow.dir/__/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp -[ 97%] Built target SlowTest_Align_estimator +[ 96%] Built target testy-the-bear make -f test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/DependInfo.cmake "--color=" -[ 98%] Linking CXX executable ../../../test-bin/test-vdb-config-model -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vdb-config-model.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o" -o ../../../test-bin/test-vdb-config-model /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 96%] Linking CXX executable ../../../test-bin/test-ngs_csra1_refwin +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_refwin.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o" -o ../../../test-bin/test-ngs_csra1_refwin -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Nothing to be done for 'test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target Build-ngs-pileup +[ 96%] Built target Build-ngs-pileup make -f test/external/prefetch/CMakeFiles/Build-prefetch.dir/build.make test/external/prefetch/CMakeFiles/Build-prefetch.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/prefetch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/prefetch /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/prefetch/CMakeFiles/Build-prefetch.dir/DependInfo.cmake "--color=" @@ -6522,192 +6575,181 @@ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'test/external/prefetch/CMakeFiles/Build-prefetch.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target Build-prefetch make -f test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build.make test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/vdb-config /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/DependInfo.cmake "--color=" -[ 98%] Built target Build-prefetch +[ 96%] Linking CXX executable ../../../bin/pileup-stats +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pileup-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pileup-stats.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build.make test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o" -o ../../../bin/pileup-stats ../../../ilib/libgeneral-writer.a ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/blobmatchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/blobmatchiterator.cpp.o -MF CMakeFiles/test-sra-search.dir/__/blobmatchiterator.cpp.o.d -o CMakeFiles/test-sra-search.dir/__/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/blobmatchiterator.cpp -[ 98%] Linking CXX executable ../../../bin/sam-factory -[ 98%] Built target Build-vdb-config -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-factory && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-factory.dir/link.txt --verbose=1 +[ 96%] Built target Build-vdb-config make -f test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build.make test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/vdb-validate /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-validate /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/DependInfo.cmake "--color=" -[ 98%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/referencematchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/referencematchiterator.cpp.o -MF CMakeFiles/test-sra-search-slow.dir/__/referencematchiterator.cpp.o.d -o CMakeFiles/test-sra-search-slow.dir/__/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/referencematchiterator.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build.make test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/sam-factory.dir/sam-factory.cpp.o" -o ../../../bin/sam-factory /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target Build-vdb-validate +make -f test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build.make test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target Build-vdb-validate -[ 98%] Built target test-vdb-config-model -[ 98%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/fragmentmatchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/fragmentmatchiterator.cpp.o -MF CMakeFiles/test-sra-search.dir/__/fragmentmatchiterator.cpp.o.d -o CMakeFiles/test-sra-search.dir/__/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp -[ 98%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/referencematchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/referencematchiterator.cpp.o -MF CMakeFiles/test-sra-search.dir/__/referencematchiterator.cpp.o.d -o CMakeFiles/test-sra-search.dir/__/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/referencematchiterator.cpp +make -f test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build.make test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target sam-factory -make -f test/loaders/kar/CMakeFiles/Build-kar.dir/build.make test/loaders/kar/CMakeFiles/Build-kar.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/kar /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/kar /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/kar/CMakeFiles/Build-kar.dir/DependInfo.cmake "--color=" +make[3]: Nothing to be done for 'test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/loaders/kar/CMakeFiles/Build-kar.dir/build.make test/loaders/kar/CMakeFiles/Build-kar.dir/build +[ 96%] Built target test-ngs_csra1_refwin +make -f test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build.make test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/depend +[ 96%] Built target Build-latf-load make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/loaders/kar/CMakeFiles/Build-kar.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Linking CXX executable ../../../../test-bin/testy-the-bear -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/ngs/testy-the-bear && /usr/bin/cmake -E cmake_link_script CMakeFiles/testy-the-bear.dir/link.txt --verbose=1 -[ 98%] Built target Build-kar -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o" -o ../../../../test-bin/testy-the-bear /usr/lib/x86_64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a ../../../../lib/libncbi-ngs-c++.a ../../../../lib/libncbi-ngs.a ../../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -[ 98%] Linking CXX executable ../../../test-bin/Test_Drivertool_RunSource -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_RunSource.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o" -o ../../../test-bin/Test_Drivertool_RunSource /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target testy-the-bear +make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/depend +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/DependInfo.cmake "--color=" +[ 96%] Linking CXX executable ../../../../test-bin/test-searchblock +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-searchblock.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Linking CXX executable ../../../test-bin/test-byteblob -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-byteblob.dir/link.txt --verbose=1 -[ 98%] Built target Test_Drivertool_RunSource -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o" -o ../../../test-bin/test-byteblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -[ 98%] Linking CXX executable ../../../bin/pileup-stats -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pileup-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pileup-stats.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o" -o ../../../bin/pileup-stats ../../../ilib/libgeneral-writer.a ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-searchblock.dir/test-searchblock.cpp.o" "CMakeFiles/test-searchblock.dir/__/searchblock.cpp.o" -o ../../../../test-bin/test-searchblock ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a +make -f test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build.make test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target test-byteblob +make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 96%] Building CXX object test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -MF CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o.d -o CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/test-id2name.cpp +[ 96%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/wb-test-fastq.cpp cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f pileup-stats.3.0.9 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv pileup-stats pileup-stats.3.0.9 -[ 98%] Linking CXX executable ../../../../test-bin/test-searchblock -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-searchblock.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pileup-stats.3.0.9 pileup-stats.3 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pileup-stats.3 pileup-stats make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-searchblock.dir/test-searchblock.cpp.o" "CMakeFiles/test-searchblock.dir/__/searchblock.cpp.o" -o ../../../../test-bin/test-searchblock ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a -[ 98%] Built target pileup-stats -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target test-searchblock -[ 98%] Linking CXX executable ../../../bin/sra-search -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-search.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/sra-search.dir/main.cpp.o" "CMakeFiles/sra-search.dir/searchblock.cpp.o" "CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o" "CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o" "CMakeFiles/sra-search.dir/referencematchiterator.cpp.o" "CMakeFiles/sra-search.dir/vdb-search.cpp.o" -o ../../../bin/sra-search ../../../ilib/libngs-vdb.a ../../../lib/libncbi-ngs.a ../../../ilib/libtk-version.a -Wl,-Bstatic -lkapp -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -[ 98%] Linking CXX executable ../../test-bin/test-vdb -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vdb.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-vdb.dir/test-vdb.cpp.o" -o ../../test-bin/test-vdb -lkapp /usr/lib/x86_64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-search.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sra-search sra-search.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-search.3.0.9 sra-search.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-search.3 sra-search -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target sra-search -make -f tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build.make tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/depend +[ 96%] Built target pileup-stats +make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build.make tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build +make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target Build-sra-search -[ 98%] Linking CXX executable ../../../bin/ref-variation -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/cmake -E cmake_link_script CMakeFiles/ref-variation.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/ref-variation.dir/common.cpp.o" "CMakeFiles/ref-variation.dir/helper.cpp.o" "CMakeFiles/ref-variation.dir/ref-variation.cpp.o" -o ../../../bin/ref-variation ../../../ilib/libtk-version.a -lkapp ../../../ilib/libngs-vdb.a ../../../lib/libncbi-ngs.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target test-vdb -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f ref-variation.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv ref-variation ref-variation.3.0.9 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ref-variation.3.0.9 ref-variation.3 -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ref-variation.3 ref-variation -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target ref-variation -[ 98%] Linking CXX executable ../../../test-bin/test-ngs_csra1pileup++ -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1pileup++.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o" -o ../../../test-bin/test-ngs_csra1pileup++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -[ 98%] Linking CXX executable ../../../../test-bin/test-sra-search -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-sra-search.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-sra-search.dir/test-sra-search.cpp.o" "CMakeFiles/test-sra-search.dir/__/vdb-search.cpp.o" "CMakeFiles/test-sra-search.dir/__/searchblock.cpp.o" "CMakeFiles/test-sra-search.dir/__/blobmatchiterator.cpp.o" "CMakeFiles/test-sra-search.dir/__/fragmentmatchiterator.cpp.o" "CMakeFiles/test-sra-search.dir/__/referencematchiterator.cpp.o" -o ../../../../test-bin/test-sra-search ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target test-ngs_csra1pileup++ -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Linking CXX executable ../../../test-bin/test-fragmentblob -[ 98%] Built target test-sra-search -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fragmentblob.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o" -o ../../../test-bin/test-fragmentblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +[ 97%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/wb-test-fastq-parse.cpp +[ 98%] Linking CXX executable ../../../test-bin/test-ngs_reference +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_reference.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target test-fragmentblob -[ 98%] Linking CXX executable ../../../test-bin/test-ngs_csra1_pileup -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_pileup.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o" -o ../../../test-bin/test-ngs_csra1_pileup -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -[ 98%] Linking CXX executable ../../../test-bin/test-ngs_csra1_refwin -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_refwin.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o" -o ../../../test-bin/test-ngs_csra1_refwin -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o" -o ../../../test-bin/test-ngs_reference -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +[ 98%] Built target test-searchblock +make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Linking CXX executable ../../../../test-bin/test-sra-search-slow -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-sra-search-slow.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-sra-search-slow.dir/test-sra-search-slow.cpp.o" "CMakeFiles/test-sra-search-slow.dir/__/vdb-search.cpp.o" "CMakeFiles/test-sra-search-slow.dir/__/searchblock.cpp.o" "CMakeFiles/test-sra-search-slow.dir/__/blobmatchiterator.cpp.o" "CMakeFiles/test-sra-search-slow.dir/__/fragmentmatchiterator.cpp.o" "CMakeFiles/test-sra-search-slow.dir/__/referencematchiterator.cpp.o" -o ../../../../test-bin/test-sra-search-slow ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a -[ 98%] Built target test-ngs_csra1_pileup +make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 98%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/test-fastq-loader.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target test-ngs_csra1_refwin -[ 98%] Linking CXX executable ../../../test-bin/test-ngs-vdb -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs-vdb.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o" -o ../../../test-bin/test-ngs-vdb ../../../ilib/libtk-version.a ../../../ilib/libngs-vdb.a -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +[ 98%] Built target test-ngs_reference +make -f test/loaders/kar/CMakeFiles/Build-kar.dir/build.make test/loaders/kar/CMakeFiles/Build-kar.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/kar /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/kar /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/kar/CMakeFiles/Build-kar.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target test-sra-search-slow +make -f test/loaders/kar/CMakeFiles/Build-kar.dir/build.make test/loaders/kar/CMakeFiles/Build-kar.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'test/loaders/kar/CMakeFiles/Build-kar.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target test-ngs-vdb -[ 98%] Linking CXX executable ../../../test-bin/test-ngs_sra_c++ +[ 98%] Built target Build-kar +[ 99%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/vdb-search.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/vdb-search.cpp.o -MF CMakeFiles/test-sra-search-slow.dir/__/vdb-search.cpp.o.d -o CMakeFiles/test-sra-search-slow.dir/__/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/vdb-search.cpp +[ 99%] Linking CXX executable ../../../test-bin/test-ngs_sra_c++ cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sra_c++.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o" -o ../../../test-bin/test-ngs_sra_c++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +[ 99%] Linking CXX executable ../../../test-bin/test-ngs-vdb +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs-vdb.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o" -o ../../../test-bin/test-ngs-vdb ../../../ilib/libtk-version.a ../../../ilib/libngs-vdb.a -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target test-ngs_sra_c++ -[ 98%] Linking CXX executable ../../../test-bin/test-referenceblob +[ 99%] Built target test-ngs_sra_c++ +[ 99%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/vdb-search.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/vdb-search.cpp.o -MF CMakeFiles/test-sra-search.dir/__/vdb-search.cpp.o.d -o CMakeFiles/test-sra-search.dir/__/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/vdb-search.cpp +[ 99%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o -MF CMakeFiles/sra-search.dir/vdb-search.cpp.o.d -o CMakeFiles/sra-search.dir/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/vdb-search.cpp +[ 99%] Linking CXX executable ../../../test-bin/test-referenceblob cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-referenceblob.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o" -o ../../../test-bin/test-referenceblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target test-referenceblob -[ 98%] Linking CXX executable ../../../test-bin/test-ngs_sradb_c++ -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sradb_c++.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o" -o ../../../test-bin/test-ngs_sradb_c++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -[ 98%] Linking CXX executable ../../../test-bin/Test_SraInfo_Unit -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sra-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraInfo_Unit.dir/link.txt --verbose=1 -[ 99%] Linking CXX executable ../../../test-bin/test-ngs_reference -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_reference.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o" -o ../../../test-bin/Test_SraInfo_Unit /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o" -o ../../../test-bin/test-ngs_reference -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +[ 99%] Built target test-ngs-vdb +[ 99%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/searchblock.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/searchblock.cpp.o -MF CMakeFiles/test-sra-search-slow.dir/__/searchblock.cpp.o.d -o CMakeFiles/test-sra-search-slow.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/searchblock.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 99%] Built target test-ngs_sradb_c++ +[ 99%] Built target test-referenceblob +[ 99%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/blobmatchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/blobmatchiterator.cpp.o -MF CMakeFiles/test-sra-search-slow.dir/__/blobmatchiterator.cpp.o.d -o CMakeFiles/test-sra-search-slow.dir/__/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/blobmatchiterator.cpp +[ 99%] Linking CXX executable ../../../test-bin/test-ngs_sradb +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sradb.dir/link.txt --verbose=1 +[ 99%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/fragmentmatchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/fragmentmatchiterator.cpp.o -MF CMakeFiles/test-sra-search-slow.dir/__/fragmentmatchiterator.cpp.o.d -o CMakeFiles/test-sra-search-slow.dir/__/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o" -o ../../../test-bin/test-ngs_sradb -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +[ 99%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/searchblock.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/searchblock.cpp.o -MF CMakeFiles/test-sra-search.dir/__/searchblock.cpp.o.d -o CMakeFiles/test-sra-search.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/searchblock.cpp +[ 99%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/referencematchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search-slow.dir/__/referencematchiterator.cpp.o -MF CMakeFiles/test-sra-search-slow.dir/__/referencematchiterator.cpp.o.d -o CMakeFiles/test-sra-search-slow.dir/__/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/referencematchiterator.cpp +[ 99%] Linking CXX executable ../../../test-bin/SlowTest_FastqLoader_id2name +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/SlowTest_FastqLoader_id2name.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o" -o ../../../test-bin/SlowTest_FastqLoader_id2name ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 99%] Built target Test_SraInfo_Unit +[ 99%] Built target test-ngs_sradb +[ 99%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/blobmatchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/blobmatchiterator.cpp.o -MF CMakeFiles/test-sra-search.dir/__/blobmatchiterator.cpp.o.d -o CMakeFiles/test-sra-search.dir/__/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/blobmatchiterator.cpp +[ 99%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/fragmentmatchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/fragmentmatchiterator.cpp.o -MF CMakeFiles/test-sra-search.dir/__/fragmentmatchiterator.cpp.o.d -o CMakeFiles/test-sra-search.dir/__/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 99%] Built target test-ngs_reference +[ 99%] Built target SlowTest_FastqLoader_id2name +[ 99%] Building CXX object tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/referencematchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++11 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/test-sra-search.dir/__/referencematchiterator.cpp.o -MF CMakeFiles/test-sra-search.dir/__/referencematchiterator.cpp.o.d -o CMakeFiles/test-sra-search.dir/__/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/referencematchiterator.cpp [ 99%] Linking CXX executable ../../../test-bin/test-ngs_csra1_readcollection cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_readcollection.dir/link.txt --verbose=1 +[ 99%] Linking CXX executable ../../../test-bin/test-ngs_sradb_c++ +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sradb_c++.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o" -o ../../../test-bin/test-ngs_csra1_readcollection -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o" -o ../../../test-bin/test-ngs_sradb_c++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' [ 99%] Built target test-ngs_csra1_readcollection -[ 99%] Linking CXX executable ../../../test-bin/test-ngs_sradb -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sradb.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o" -o ../../../test-bin/test-ngs_sradb -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 99%] Built target test-ngs_sradb -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c: In function 'sqlite3SelectNew': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:115649:10: warning: function may return address of local variable [-Wreturn-local-addr] -115649 | return pNew; - | ^~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:115609:10: note: declared here -115609 | Select standin; - | ^~~~~~~ -[ 99%] Linking CXX executable ../../../../test-bin/test-general-loader -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-general-loader.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o" "CMakeFiles/test-general-loader.dir/testsource.cpp.o" -o ../../../../test-bin/test-general-loader ../../../../ilib/libgeneral-writer.a -lkapp -lktst ../../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm +[ 99%] Built target test-ngs_sradb_c++ +[ 99%] Linking CXX executable ../../../bin/sra-search +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-search.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/sra-search.dir/main.cpp.o" "CMakeFiles/sra-search.dir/searchblock.cpp.o" "CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o" "CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o" "CMakeFiles/sra-search.dir/referencematchiterator.cpp.o" "CMakeFiles/sra-search.dir/vdb-search.cpp.o" -o ../../../bin/sra-search ../../../ilib/libngs-vdb.a ../../../lib/libncbi-ngs.a ../../../ilib/libtk-version.a -Wl,-Bstatic -lkapp -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-search.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv sra-search sra-search.3.0.9 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-search.3.0.9 sra-search.3 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-search.3 sra-search +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 99%] Built target sra-search +make -f tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build.make tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 99%] Built target test-general-loader +make -f tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build.make tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 99%] Built target Build-sra-search +[ 99%] Linking CXX executable ../../../../test-bin/test-sra-search-slow +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-sra-search-slow.dir/link.txt --verbose=1 +[ 99%] Linking CXX executable ../../../../test-bin/test-sra-search +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-sra-search.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-sra-search-slow.dir/test-sra-search-slow.cpp.o" "CMakeFiles/test-sra-search-slow.dir/__/vdb-search.cpp.o" "CMakeFiles/test-sra-search-slow.dir/__/searchblock.cpp.o" "CMakeFiles/test-sra-search-slow.dir/__/blobmatchiterator.cpp.o" "CMakeFiles/test-sra-search-slow.dir/__/fragmentmatchiterator.cpp.o" "CMakeFiles/test-sra-search-slow.dir/__/referencematchiterator.cpp.o" -o ../../../../test-bin/test-sra-search-slow ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-sra-search.dir/test-sra-search.cpp.o" "CMakeFiles/test-sra-search.dir/__/vdb-search.cpp.o" "CMakeFiles/test-sra-search.dir/__/searchblock.cpp.o" "CMakeFiles/test-sra-search.dir/__/blobmatchiterator.cpp.o" "CMakeFiles/test-sra-search.dir/__/fragmentmatchiterator.cpp.o" "CMakeFiles/test-sra-search.dir/__/referencematchiterator.cpp.o" -o ../../../../test-bin/test-sra-search ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 99%] Built target test-sra-search-slow +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[ 99%] Built target test-sra-search [ 99%] Linking CXX executable ../../../test-bin/test-ngs_csra1 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o" -o ../../../test-bin/test-ngs_csra1 -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a @@ -6718,32 +6760,16 @@ /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o" -o ../../../test-bin/test-ngs_sra -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' [ 99%] Built target test-ngs_sra -[ 99%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastq_dflt -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastq_dflt ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 99%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastqParse +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastqParse.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastqParse ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +[ 99%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastqLoader +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastqLoader ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 99%] Built target Test_FastqLoader_WbFastq_dflt -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c: In function 'sqlite3VdbeExpandSql': -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:77729:10: warning: function may return address of local variable [-Wreturn-local-addr] -77729 | return sqlite3StrAccumFinish(&out); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here -77625 | char zBase[100]; /* Initial working space */ - | ^~~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:77729:10: warning: function may return address of local variable [-Wreturn-local-addr] -77729 | return sqlite3StrAccumFinish(&out); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here -77625 | char zBase[100]; /* Initial working space */ - | ^~~~~ -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here -/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here -[ 99%] Linking CXX executable ../../../test-bin/test-ngs_csra1_c++ -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_c++.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o" -o ../../../test-bin/test-ngs_csra1_c++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +[ 99%] Built target Test_FastqLoader_WbFastqParse make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 99%] Built target test-ngs_csra1_c++ +[ 99%] Built target Test_FastqLoader_WbFastqLoader [ 99%] Linking C static library ../../ilib/libvdb-sqlite.a cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/vdb-sqlite && /usr/bin/cmake -P CMakeFiles/vdb-sqlite.dir/cmake_clean_target.cmake cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/vdb-sqlite && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-sqlite.dir/link.txt --verbose=1 @@ -6752,25 +6778,30 @@ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' [ 99%] Built target vdb-sqlite make -f tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/build.make tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/depend -make -f tools/internal/vdb-sql/CMakeFiles/fastconv.dir/build.make tools/internal/vdb-sql/CMakeFiles/fastconv.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-sql /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-sql /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/DependInfo.cmake "--color=" +make -f tools/internal/vdb-sql/CMakeFiles/fastconv.dir/build.make tools/internal/vdb-sql/CMakeFiles/fastconv.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-sql /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-sql /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-sql/CMakeFiles/fastconv.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f tools/internal/vdb-sql/CMakeFiles/fastconv.dir/build.make tools/internal/vdb-sql/CMakeFiles/fastconv.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/build.make tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[ 99%] Building C object tools/internal/vdb-sql/CMakeFiles/fastconv.dir/fastconv.c.o -cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-sql && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-sql\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-sql/CMakeFiles/fastconv.dir/fastconv.c.o -MF CMakeFiles/fastconv.dir/fastconv.c.o.d -o CMakeFiles/fastconv.dir/fastconv.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-sql/fastconv.c +make -f tools/internal/vdb-sql/CMakeFiles/fastconv.dir/build.make tools/internal/vdb-sql/CMakeFiles/fastconv.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' [ 99%] Building C object tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/vdb_shell.c.o cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-sql && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-sql\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-sql/CMakeFiles/vdb-sql.dir/vdb_shell.c.o -MF CMakeFiles/vdb-sql.dir/vdb_shell.c.o.d -o CMakeFiles/vdb-sql.dir/vdb_shell.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-sql/vdb_shell.c +[ 99%] Linking CXX executable ../../../test-bin/test-ngs_csra1_c++ +[ 99%] Building C object tools/internal/vdb-sql/CMakeFiles/fastconv.dir/fastconv.c.o +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_c++.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-sql && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-sql\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.0.9+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-sql/CMakeFiles/fastconv.dir/fastconv.c.o -MF CMakeFiles/fastconv.dir/fastconv.c.o.d -o CMakeFiles/fastconv.dir/fastconv.c.o -c /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/internal/vdb-sql/fastconv.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o" -o ../../../test-bin/test-ngs_csra1_c++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a [ 99%] Linking C executable ../../../bin/fastconv cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-sql && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastconv.dir/link.txt --verbose=1 /usr/bin/cc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now CMakeFiles/fastconv.dir/fastconv.c.o -o ../../../bin/fastconv /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libvdb-sqlite.a ../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && rm -f fastconv.3.0.9 +[ 99%] Built target test-ngs_csra1_c++ cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && mv fastconv fastconv.3.0.9 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fastconv.3.0.9 fastconv.3 cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fastconv.3 fastconv @@ -6785,6 +6816,11 @@ cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-sql.3 vdb-sql make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' [100%] Built target vdb-sql +[100%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastq_dflt +cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastq_dflt ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +[100%] Built target Test_FastqLoader_WbFastq_dflt [100%] Linking CXX executable ../../../bin/bam-load cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam-load.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.0.9+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now "CMakeFiles/bam-load.dir/bam-loader.c.o" "CMakeFiles/bam-load.dir/bam.c.o" "CMakeFiles/bam-load.dir/sam.c.o" "CMakeFiles/bam-load.dir/alignment-writer.c.o" "CMakeFiles/bam-load.dir/reference-writer.c.o" "CMakeFiles/bam-load.dir/sequence-writer.c.o" "CMakeFiles/bam-load.dir/loader-imp.c.o" "CMakeFiles/bam-load.dir/mem-bank.cpp.o" "CMakeFiles/bam-load.dir/low-match-count.cpp.o" -o ../../../bin/bam-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lz @@ -6795,40 +6831,40 @@ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' [100%] Built target bam-load make -f test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build.make test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/depend -make -f test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build.make test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/depend -make -f test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build.make test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/depend -make -f test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build.make test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/fasterq-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/fasterq-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/DependInfo.cmake "--color=" +make -f test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build.make test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build.make test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/depend cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sam-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sam-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build.make test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/depend cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.0.9+dfsg /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/sra-sort /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/sra-sort /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build.make test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build.make test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make -f test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build.make test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build -make -f test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build.make test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build -make -f test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build.make test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build.make test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build'. +make[3]: Nothing to be done for 'test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build.make test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' +make -f test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build.make test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' -[100%] Built target Build-bam-load -[100%] Built target Build-sam-dump [100%] Built target Build-fasterq-dump +[100%] Built target Build-sam-dump +[100%] Built target Build-bam-load [100%] Built target Build-sra-sort [100%] Linking CXX executable ../../../bin/sam-analyze cd /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-analyze.dir/link.txt --verbose=1 @@ -6891,7 +6927,7 @@ 9: build/bdist.linux-x86_64/egg/ngs/LibManager.py:123: SyntaxWarning: invalid escape sequence '\.' 9: arr = re.split('\.\s*|\-\s*|\s+', version_str) 9: zip_safe flag not set; analyzing archive contents... - 1/187 Test #9: Test_NGS_Python_install ........................... Passed 0.34 sec + 1/187 Test #9: Test_NGS_Python_install ........................... Passed 0.83 sec test 15 Start 15: Ngs_MakeDB @@ -6902,7 +6938,7 @@ 15: SparseFragmentBlobs (0 s) 15: 15: *** No errors detected (0 s total) - 2/187 Test #15: Ngs_MakeDB ........................................ Passed 0.04 sec + 2/187 Test #15: Ngs_MakeDB ........................................ Passed 0.12 sec test 16 Start 16: Test_Ngs @@ -6911,7 +6947,7 @@ 16: Test timeout computed to be: 1500 16: 16: *** No errors detected (0 s total) - 3/187 Test #16: Test_Ngs .......................................... Passed 0.00 sec + 3/187 Test #16: Test_Ngs .......................................... Passed 0.04 sec test 32 Start 32: GeneralWriterTest @@ -6943,25 +6979,25 @@ 32: addTable correctly failed 32: endStream Success 32: --------------------------------- - 4/187 Test #32: GeneralWriterTest ................................. Passed 0.00 sec + 4/187 Test #32: GeneralWriterTest ................................. Passed 0.02 sec test 33 Start 33: Ref-Variation-1.0 33: Test command: /usr/bin/sh "./have-access.sh" "/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin" "ref-variation" 33: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ref-variation/test 33: Test timeout computed to be: 1500 -33: ./have-access.sh: 6: vdb-config: not found +33: ./have-access.sh: line 6: vdb-config: command not found 33: no access to repository, skipping ref-variation test... - 5/187 Test #33: Ref-Variation-1.0 ................................. Passed 0.00 sec + 5/187 Test #33: Ref-Variation-1.0 ................................. Passed 0.02 sec test 34 Start 34: Var-Expand-1.0 34: Test command: /usr/bin/sh "./have-access.sh" "/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin" "var-expand" 34: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/ref-variation/test 34: Test timeout computed to be: 1500 -34: ./have-access.sh: 6: vdb-config: not found +34: ./have-access.sh: line 6: vdb-config: command not found 34: no access to repository, skipping var-expand test... - 6/187 Test #34: Var-Expand-1.0 .................................... Passed 0.00 sec + 6/187 Test #34: Var-Expand-1.0 .................................... Passed 0.01 sec test 35 Start 35: SearchBlockWhiteBox @@ -6979,7 +7015,7 @@ 35: SearchSmithWaterman_Coords_NotSupported (0 s) 35: 35: *** No errors detected (0 s total) - 7/187 Test #35: SearchBlockWhiteBox ............................... Passed 0.00 sec + 7/187 Test #35: SearchBlockWhiteBox ............................... Passed 0.01 sec test 38 Start 38: SraSearch-1.0-h @@ -6987,7 +7023,7 @@ 38: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 38: Test timeout computed to be: 1500 38: running test case 1.0-h... passed - 8/187 Test #38: SraSearch-1.0-h ................................... Passed 0.01 sec + 8/187 Test #38: SraSearch-1.0-h ................................... Passed 0.11 sec test 39 Start 39: SraSearch-1.1-help @@ -6995,7 +7031,7 @@ 39: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 39: Test timeout computed to be: 1500 39: running test case 1.1-help... passed - 9/187 Test #39: SraSearch-1.1-help ................................ Passed 0.01 sec + 9/187 Test #39: SraSearch-1.1-help ................................ Passed 0.14 sec test 40 Start 40: SraSearch-1.2-V @@ -7003,7 +7039,7 @@ 40: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 40: Test timeout computed to be: 1500 40: sra-search : 3.0.9 - 10/187 Test #40: SraSearch-1.2-V ................................... Passed 0.01 sec + 10/187 Test #40: SraSearch-1.2-V ................................... Passed 0.06 sec test 41 Start 41: SraSearch-1.3-version @@ -7011,7 +7047,7 @@ 41: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 41: Test timeout computed to be: 1500 41: sra-search : 3.0.9 - 11/187 Test #41: SraSearch-1.3-version ............................. Passed 0.01 sec + 11/187 Test #41: SraSearch-1.3-version ............................. Passed 0.05 sec test 42 Start 42: SraSearch-2.0-no-args @@ -7019,7 +7055,7 @@ 42: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 42: Test timeout computed to be: 1500 42: running test case 2.0-no-args... passed - 12/187 Test #42: SraSearch-2.0-no-args ............................. Passed 0.02 sec + 12/187 Test #42: SraSearch-2.0-no-args ............................. Passed 0.23 sec test 43 Start 43: SraSearch-2.1-no-run @@ -7027,7 +7063,7 @@ 43: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 43: Test timeout computed to be: 1500 43: running test case 2.1-no-run... passed - 13/187 Test #43: SraSearch-2.1-no-run .............................. Passed 0.02 sec + 13/187 Test #43: SraSearch-2.1-no-run .............................. Passed 0.23 sec test 44 Start 44: SraSearch-2.2-missing-algorithm @@ -7035,7 +7071,7 @@ 44: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 44: Test timeout computed to be: 1500 44: running test case 2.2-missing-algorithm... passed - 14/187 Test #44: SraSearch-2.2-missing-algorithm ................... Passed 0.02 sec + 14/187 Test #44: SraSearch-2.2-missing-algorithm ................... Passed 0.24 sec test 45 Start 45: SraSearch-2.3-bad-algorithm @@ -7043,7 +7079,7 @@ 45: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 45: Test timeout computed to be: 1500 45: running test case 2.3-bad-algorithm... passed - 15/187 Test #45: SraSearch-2.3-bad-algorithm ....................... Passed 0.02 sec + 15/187 Test #45: SraSearch-2.3-bad-algorithm ....................... Passed 0.22 sec test 61 Start 61: SraSearch-5.1-run-not-nucstrstr-with-expression @@ -7051,7 +7087,7 @@ 61: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 61: Test timeout computed to be: 1500 61: running test case 5.1-run-not-nucstrstr-with-expression... passed - 16/187 Test #61: SraSearch-5.1-run-not-nucstrstr-with-expression ... Passed 0.02 sec + 16/187 Test #61: SraSearch-5.1-run-not-nucstrstr-with-expression ... Passed 0.22 sec test 62 Start 62: SraSearch-6.0.1-imperfect-match-no-arg @@ -7059,7 +7095,7 @@ 62: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 62: Test timeout computed to be: 1500 62: running test case 6.0.1-imperfect-match-no-arg... passed - 17/187 Test #62: SraSearch-6.0.1-imperfect-match-no-arg ............ Passed 0.01 sec + 17/187 Test #62: SraSearch-6.0.1-imperfect-match-no-arg ............ Passed 0.14 sec test 63 Start 63: SraSearch-6.0.2-imperfect-match-bad-arg @@ -7067,7 +7103,7 @@ 63: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 63: Test timeout computed to be: 1500 63: running test case 6.0.2-imperfect-match-bad-arg... passed - 18/187 Test #63: SraSearch-6.0.2-imperfect-match-bad-arg ........... Passed 0.01 sec + 18/187 Test #63: SraSearch-6.0.2-imperfect-match-bad-arg ........... Passed 0.14 sec test 64 Start 64: SraSearch-6.0.3-imperfect-match-default @@ -7075,7 +7111,7 @@ 64: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 64: Test timeout computed to be: 1500 64: running test case 6.0.3-imperfect-match-default... passed - 19/187 Test #64: SraSearch-6.0.3-imperfect-match-default ........... Passed 0.01 sec + 19/187 Test #64: SraSearch-6.0.3-imperfect-match-default ........... Passed 0.15 sec test 65 Start 65: SraSearch-6.1-imperfect-match-fgrep-standard @@ -7083,7 +7119,7 @@ 65: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 65: Test timeout computed to be: 1500 65: running test case 6.1-imperfect-match-fgrep-standard... passed - 20/187 Test #65: SraSearch-6.1-imperfect-match-fgrep-standard ...... Passed 0.01 sec + 20/187 Test #65: SraSearch-6.1-imperfect-match-fgrep-standard ...... Passed 0.15 sec test 66 Start 66: SraSearch-6.2-imperfect-match-fgrep-boyer-moore @@ -7091,7 +7127,7 @@ 66: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 66: Test timeout computed to be: 1500 66: running test case 6.2-imperfect-match-fgrep-boyer-moore... passed - 21/187 Test #66: SraSearch-6.2-imperfect-match-fgrep-boyer-moore ... Passed 0.01 sec + 21/187 Test #66: SraSearch-6.2-imperfect-match-fgrep-boyer-moore ... Passed 0.15 sec test 67 Start 67: SraSearch-6.3-imperfect-match-fgrep-aho @@ -7099,7 +7135,7 @@ 67: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 67: Test timeout computed to be: 1500 67: running test case 6.3-imperfect-match-fgrep-aho... passed - 22/187 Test #67: SraSearch-6.3-imperfect-match-fgrep-aho ........... Passed 0.01 sec + 22/187 Test #67: SraSearch-6.3-imperfect-match-fgrep-aho ........... Passed 0.15 sec test 72 Start 72: SraSearch-6.8-imperfect-match-nucstrstr @@ -7107,7 +7143,7 @@ 72: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 72: Test timeout computed to be: 1500 72: running test case 6.8-imperfect-match-nucstrstr... passed - 23/187 Test #72: SraSearch-6.8-imperfect-match-nucstrstr ........... Passed 0.01 sec + 23/187 Test #72: SraSearch-6.8-imperfect-match-nucstrstr ........... Passed 0.16 sec test 74 Start 74: SraSearch-7.0.1-threads-no-arg @@ -7115,7 +7151,7 @@ 74: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 74: Test timeout computed to be: 1500 74: running test case 7.0.1-threads-no-arg... passed - 24/187 Test #74: SraSearch-7.0.1-threads-no-arg .................... Passed 0.02 sec + 24/187 Test #74: SraSearch-7.0.1-threads-no-arg .................... Passed 0.24 sec test 75 Start 75: SraSearch-7.0.2-threads-bad-arg @@ -7123,7 +7159,7 @@ 75: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 75: Test timeout computed to be: 1500 75: running test case 7.0.2-threads-bad-arg... passed - 25/187 Test #75: SraSearch-7.0.2-threads-bad-arg ................... Passed 0.02 sec + 25/187 Test #75: SraSearch-7.0.2-threads-bad-arg ................... Passed 0.23 sec test 80 Start 80: SlowTest_SraSearch-8.0-nothing-found @@ -7131,7 +7167,7 @@ 80: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 80: Test timeout computed to be: 1500 80: running test case 8.0-nothing-found... passed - 26/187 Test #80: SlowTest_SraSearch-8.0-nothing-found .............. Passed 1.05 sec + 26/187 Test #80: SlowTest_SraSearch-8.0-nothing-found .............. Passed 1.23 sec test 84 Start 84: SraSearch-9.3-reference-expression @@ -7139,7 +7175,7 @@ 84: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/external/sra-search/test 84: Test timeout computed to be: 1500 84: running test case 9.3-reference-expression... passed - 27/187 Test #84: SraSearch-9.3-reference-expression ................ Passed 0.02 sec + 27/187 Test #84: SraSearch-9.3-reference-expression ................ Passed 0.23 sec test 86 Start 86: GeneralLoaderWhiteBox @@ -7210,7 +7246,7 @@ 86: ProgressMessage (0 s) 86: TargetOverride (0 s) 86: -86: *** No errors detected (0 s total) +86: *** No errors detected (1 s total) 86: Packed protocol: Running 62 test cases... 86: EmptyInput (0 s) 86: ShortInput (0 s) @@ -7276,21 +7312,21 @@ 86: TargetOverride (0 s) 86: 86: *** No errors detected (0 s total) - 28/187 Test #86: GeneralLoaderWhiteBox ............................. Passed 0.29 sec + 28/187 Test #86: GeneralLoaderWhiteBox ............................. Passed 2.03 sec test 87 Start 87: GWDumper 87: Test command: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test-bin/test-gw-dumper 87: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test 87: Test timeout computed to be: 1500 - 29/187 Test #87: GWDumper .......................................... Passed 0.00 sec + 29/187 Test #87: GWDumper .......................................... Passed 0.01 sec test 88 Start 88: makeinputs 88: Test command: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test-bin/makeinputs 88: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test 88: Test timeout computed to be: 1500 - 30/187 Test #88: makeinputs ........................................ Passed 0.00 sec + 30/187 Test #88: makeinputs ........................................ Passed 0.01 sec test 89 Start 89: GeneralLoader-1.0-Basic-Unpacked @@ -7302,7 +7338,7 @@ 89: cat input/1.gl | /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/general-loader -I/usr/include/ncbi-vdb 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1/load.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1/load.stderr 89: Load succeeded, dumping and matching stdout 89: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1/db 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1/dump.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1/dump.stderr - 31/187 Test #89: GeneralLoader-1.0-Basic-Unpacked .................. Passed 0.29 sec + 31/187 Test #89: GeneralLoader-1.0-Basic-Unpacked .................. Passed 1.07 sec test 90 Start 90: GeneralLoader-1.1-Basic-Packed @@ -7314,7 +7350,7 @@ 90: cat input/1packed.gl | /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/general-loader -I/usr/include/ncbi-vdb 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1packed/load.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1packed/load.stderr 90: Load succeeded, dumping and matching stdout 90: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1packed/db 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1packed/dump.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1packed/dump.stderr - 32/187 Test #90: GeneralLoader-1.1-Basic-Packed .................... Passed 0.29 sec + 32/187 Test #90: GeneralLoader-1.1-Basic-Packed .................... Passed 1.43 sec test 91 Start 91: GeneralLoader-1.2-TargetDbOverride @@ -7326,7 +7362,7 @@ 91: cat input/1override.gl | /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/general-loader -I/usr/include/ncbi-vdb --target actual/1override/db 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1override/load.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1override/load.stderr 91: Load succeeded, dumping and matching stdout 91: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1override/db 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1override/dump.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1override/dump.stderr - 33/187 Test #91: GeneralLoader-1.2-TargetDbOverride ................ Passed 0.30 sec + 33/187 Test #91: GeneralLoader-1.2-TargetDbOverride ................ Passed 1.24 sec test 92 Start 92: GeneralLoader-1.3-TargetDbOverrideShorthand @@ -7338,7 +7374,7 @@ 92: cat input/1override.gl | /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/general-loader -I/usr/include/ncbi-vdb -T actual/1override/db 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1override/load.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1override/load.stderr 92: Load succeeded, dumping and matching stdout 92: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1override/db 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1override/dump.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/1override/dump.stderr - 34/187 Test #92: GeneralLoader-1.3-TargetDbOverrideShorthand ....... Passed 0.30 sec + 34/187 Test #92: GeneralLoader-1.3-TargetDbOverrideShorthand ....... Passed 1.34 sec test 93 Start 93: GeneralLoader-2.0-ErrorMessageEvent-Unpacked @@ -7349,7 +7385,7 @@ 93: running test case 2 93: cat input/2.gl | /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/general-loader -I/usr/include/ncbi-vdb -L=err 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/2/load.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/2/load.stderr 93: Load failed as expected, matching stderr - 35/187 Test #93: GeneralLoader-2.0-ErrorMessageEvent-Unpacked ...... Passed 0.15 sec + 35/187 Test #93: GeneralLoader-2.0-ErrorMessageEvent-Unpacked ...... Passed 0.74 sec test 94 Start 94: GeneralLoader-2.1-ErrorMessageEvent-Packed @@ -7360,7 +7396,7 @@ 94: running test case 2packed 94: cat input/2packed.gl | /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/general-loader -I/usr/include/ncbi-vdb -L=err 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/2packed/load.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/2packed/load.stderr 94: Load failed as expected, matching stderr - 36/187 Test #94: GeneralLoader-2.1-ErrorMessageEvent-Packed ........ Passed 0.15 sec + 36/187 Test #94: GeneralLoader-2.1-ErrorMessageEvent-Packed ........ Passed 0.78 sec test 95 Start 95: GeneralLoader-3.0-EmptyDefaultValues-Unpacked @@ -7372,7 +7408,7 @@ 95: cat input/3.gl | /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/general-loader -I/usr/include/ncbi-vdb 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/3/load.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/3/load.stderr 95: Load succeeded, dumping and matching stdout 95: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/3/db 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/3/dump.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/3/dump.stderr - 37/187 Test #95: GeneralLoader-3.0-EmptyDefaultValues-Unpacked ..... Passed 0.29 sec + 37/187 Test #95: GeneralLoader-3.0-EmptyDefaultValues-Unpacked ..... Passed 1.46 sec test 96 Start 96: GeneralLoader-3.1-EmptyDefaultValues-Packed @@ -7384,7 +7420,7 @@ 96: cat input/3.gl | /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/general-loader -I/usr/include/ncbi-vdb 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/3/load.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/3/load.stderr 96: Load succeeded, dumping and matching stdout 96: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/3/db 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/3/dump.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/3/dump.stderr - 38/187 Test #96: GeneralLoader-3.1-EmptyDefaultValues-Packed ....... Passed 0.29 sec + 38/187 Test #96: GeneralLoader-3.1-EmptyDefaultValues-Packed ....... Passed 1.24 sec test 97 Start 97: GeneralLoader-4.0-MoveAheadEvent-Unpacked @@ -7396,7 +7432,7 @@ 97: cat input/4.gl | /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/general-loader -I/usr/include/ncbi-vdb 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/4/load.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/4/load.stderr 97: Load succeeded, dumping and matching stdout 97: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/4/db 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/4/dump.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/4/dump.stderr - 39/187 Test #97: GeneralLoader-4.0-MoveAheadEvent-Unpacked ......... Passed 0.30 sec + 39/187 Test #97: GeneralLoader-4.0-MoveAheadEvent-Unpacked ......... Passed 1.45 sec test 98 Start 98: GeneralLoader-4.1-MoveAheadEvent-Packed @@ -7408,7 +7444,7 @@ 98: cat input/4packed.gl | /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/general-loader -I/usr/include/ncbi-vdb 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/4packed/load.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/4packed/load.stderr 98: Load succeeded, dumping and matching stdout 98: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/4packed/db 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/4packed/dump.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/4packed/dump.stderr - 40/187 Test #98: GeneralLoader-4.1-MoveAheadEvent-Packed ........... Passed 0.29 sec + 40/187 Test #98: GeneralLoader-4.1-MoveAheadEvent-Packed ........... Passed 1.18 sec test 99 Start 99: GeneralLoader-5.0-IntegerConversion @@ -7420,7 +7456,7 @@ 99: cat input/5packed.gl | /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/general-loader -I/usr/include/ncbi-vdb 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/5packed/load.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/5packed/load.stderr 99: Load succeeded, dumping and matching stdout 99: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/5packed/db 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/5packed/dump.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/5packed/dump.stderr - 41/187 Test #99: GeneralLoader-5.0-IntegerConversion ............... Passed 0.30 sec + 41/187 Test #99: GeneralLoader-5.0-IntegerConversion ............... Passed 0.68 sec test 100 Start 100: GeneralLoader-6.0-SoftwareName-Unpacked @@ -7432,7 +7468,7 @@ 100: cat input/6.gl | /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/general-loader -L=info -I/usr/include/ncbi-vdb 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/6/load.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/6/load.stderr 100: Load succeeded, dumping and matching stdout 100: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/kdbmeta /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/6/db SOFTWARE/formatter 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/6/dump.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/6/dump.stderr - 42/187 Test #100: GeneralLoader-6.0-SoftwareName-Unpacked ........... Passed 0.17 sec + 42/187 Test #100: GeneralLoader-6.0-SoftwareName-Unpacked ........... Passed 0.66 sec test 101 Start 101: GeneralLoader-6.1-SoftwareName-Packed @@ -7444,14 +7480,14 @@ 101: cat input/6packed.gl | /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/general-loader -L=info -I/usr/include/ncbi-vdb 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/6packed/load.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/6packed/load.stderr 101: Load succeeded, dumping and matching stdout 101: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/kdbmeta /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/6packed/db SOFTWARE/formatter 1>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/6packed/dump.stdout 2>/build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/actual/6packed/dump.stderr - 43/187 Test #101: GeneralLoader-6.1-SoftwareName-Packed ............. Passed 0.19 sec + 43/187 Test #101: GeneralLoader-6.1-SoftwareName-Packed ............. Passed 0.45 sec test 102 Start 102: bio-end-makeinputs 102: Test command: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test-bin/bio-end-makeinputs 102: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema 102: Test timeout computed to be: 1500 - 44/187 Test #102: bio-end-makeinputs ................................ Passed 0.00 sec + 44/187 Test #102: bio-end-makeinputs ................................ Passed 0.02 sec test 103 Start 103: BioEnd-Excl-1 @@ -7459,7 +7495,7 @@ 103: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema 103: Test timeout computed to be: 1500 103: running test bio-end:excl-1 - 45/187 Test #103: BioEnd-Excl-1 ..................................... Passed 0.15 sec + 45/187 Test #103: BioEnd-Excl-1 ..................................... Passed 0.60 sec test 104 Start 104: BioEnd-Excl-2 @@ -7467,7 +7503,7 @@ 104: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema 104: Test timeout computed to be: 1500 104: running test bio-end:excl-2 - 46/187 Test #104: BioEnd-Excl-2 ..................................... Passed 0.14 sec + 46/187 Test #104: BioEnd-Excl-2 ..................................... Passed 0.35 sec test 105 Start 105: BioEnd-Excl-3 @@ -7475,7 +7511,7 @@ 105: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema 105: Test timeout computed to be: 1500 105: running test bio-end:excl-3 - 47/187 Test #105: BioEnd-Excl-3 ..................................... Passed 0.14 sec + 47/187 Test #105: BioEnd-Excl-3 ..................................... Passed 0.42 sec test 106 Start 106: BioEnd-Excl-4 @@ -7483,7 +7519,7 @@ 106: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema 106: Test timeout computed to be: 1500 106: running test bio-end:excl-4 - 48/187 Test #106: BioEnd-Excl-4 ..................................... Passed 0.14 sec + 48/187 Test #106: BioEnd-Excl-4 ..................................... Passed 0.65 sec test 107 Start 107: BioEnd-Incl-1 @@ -7491,7 +7527,7 @@ 107: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema 107: Test timeout computed to be: 1500 107: running test bio-end:incl-1 - 49/187 Test #107: BioEnd-Incl-1 ..................................... Passed 0.14 sec + 49/187 Test #107: BioEnd-Incl-1 ..................................... Passed 0.52 sec test 108 Start 108: IdxText-CI-1 @@ -7499,14 +7535,14 @@ 108: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema 108: Test timeout computed to be: 1500 108: running test bio-end:excl-1 - 50/187 Test #108: IdxText-CI-1 ...................................... Passed 0.14 sec + 50/187 Test #108: IdxText-CI-1 ...................................... Passed 0.53 sec test 109 Start 109: idx-text-makeinputs 109: Test command: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test-bin/idx-text-makeinputs 109: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema 109: Test timeout computed to be: 1500 - 51/187 Test #109: idx-text-makeinputs ............................... Passed 0.00 sec + 51/187 Test #109: idx-text-makeinputs ............................... Passed 0.02 sec test 110 Start 110: IdxText-ci-1 @@ -7514,7 +7550,7 @@ 110: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema 110: Test timeout computed to be: 1500 110: running test idx-text:ci-1 - 52/187 Test #110: IdxText-ci-1 ...................................... Passed 0.14 sec + 52/187 Test #110: IdxText-ci-1 ...................................... Passed 0.65 sec test 111 Start 111: IdxText-ci-2 @@ -7522,7 +7558,7 @@ 111: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema 111: Test timeout computed to be: 1500 111: running test idx-text:ci-2 - 53/187 Test #111: IdxText-ci-2 ...................................... Passed 0.14 sec + 53/187 Test #111: IdxText-ci-2 ...................................... Passed 0.70 sec test 112 Start 112: IdxText-ci-3 @@ -7530,7 +7566,7 @@ 112: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema 112: Test timeout computed to be: 1500 112: running test idx-text:ci-3 - 54/187 Test #112: IdxText-ci-3 ...................................... Passed 0.14 sec + 54/187 Test #112: IdxText-ci-3 ...................................... Passed 0.78 sec test 113 Start 113: IdxText-ci-4 @@ -7538,7 +7574,7 @@ 113: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema 113: Test timeout computed to be: 1500 113: running test idx-text:ci-4 - 55/187 Test #113: IdxText-ci-4 ...................................... Passed 0.14 sec + 55/187 Test #113: IdxText-ci-4 ...................................... Passed 0.71 sec test 114 Start 114: IdxText-ci-5 @@ -7546,7 +7582,7 @@ 114: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema 114: Test timeout computed to be: 1500 114: running test idx-text:ci-5 - 56/187 Test #114: IdxText-ci-5 ...................................... Passed 0.10 sec + 56/187 Test #114: IdxText-ci-5 ...................................... Passed 0.59 sec test 115 Start 115: IdxText-cs-1 @@ -7554,7 +7590,7 @@ 115: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema 115: Test timeout computed to be: 1500 115: running test idx-text:cs-1 - 57/187 Test #115: IdxText-cs-1 ...................................... Passed 0.14 sec + 57/187 Test #115: IdxText-cs-1 ...................................... Passed 0.65 sec test 116 Start 116: IdxText-cs-2 @@ -7562,7 +7598,7 @@ 116: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema 116: Test timeout computed to be: 1500 116: running test idx-text:cs-2 - 58/187 Test #116: IdxText-cs-2 ...................................... Passed 0.14 sec + 58/187 Test #116: IdxText-cs-2 ...................................... Passed 0.74 sec test 117 Start 117: IdxText-cs-3 @@ -7570,7 +7606,7 @@ 117: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/tools/loaders/general-loader/test/vschema 117: Test timeout computed to be: 1500 117: running test idx-text:cs-3 - 59/187 Test #117: IdxText-cs-3 ...................................... Passed 0.10 sec + 59/187 Test #117: IdxText-cs-3 ...................................... Passed 0.39 sec test 118 Start 118: PileupStats-Version @@ -7578,14 +7614,14 @@ grep --quiet `head -n 1 /build/reproducible-path/sra-sdk-3.0.9+dfsg/shared/toolkit.vers`" 118: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pileup-stats/test 118: Test timeout computed to be: 1500 - 60/187 Test #118: PileupStats-Version ............................... Passed 0.01 sec + 60/187 Test #118: PileupStats-Version ............................... Passed 0.06 sec test 119 Start 119: PileupStats-Help 119: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/pileup-stats -h | grep --quiet Usage" 119: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pileup-stats/test 119: Test timeout computed to be: 1500 - 61/187 Test #119: PileupStats-Help .................................. Passed 0.01 sec + 61/187 Test #119: PileupStats-Help .................................. Passed 0.04 sec test 120 Start 120: PileupStats-NoArgs @@ -7616,8 +7652,7 @@ 120: 120: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/pileup-stats : 3.0.9 120: -120: /usr/bin/sh: 1: [: 3: unexpected operator - 62/187 Test #120: PileupStats-NoArgs ................................ Passed 0.01 sec + 62/187 Test #120: PileupStats-NoArgs ................................ Passed 0.05 sec test 121 Start 121: PileupStats-IgnoreArgs-L @@ -7648,8 +7683,7 @@ 121: 121: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/pileup-stats : 3.0.9 121: -121: /usr/bin/sh: 1: [: 3: unexpected operator - 63/187 Test #121: PileupStats-IgnoreArgs-L .......................... Passed 0.00 sec + 63/187 Test #121: PileupStats-IgnoreArgs-L .......................... Passed 0.04 sec test 122 Start 122: PileupStats-IgnoreArgs-z @@ -7680,8 +7714,7 @@ 122: 122: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/pileup-stats : 3.0.9 122: -122: /usr/bin/sh: 1: [: 3: unexpected operator - 64/187 Test #122: PileupStats-IgnoreArgs-z .......................... Passed 0.00 sec + 64/187 Test #122: PileupStats-IgnoreArgs-z .......................... Passed 0.05 sec test 123 Start 123: PileupStats-IgnoreArgs-loglevel @@ -7712,8 +7745,7 @@ 123: 123: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/pileup-stats : 3.0.9 123: -123: /usr/bin/sh: 1: [: 3: unexpected operator - 65/187 Test #123: PileupStats-IgnoreArgs-loglevel ................... Passed 0.01 sec + 65/187 Test #123: PileupStats-IgnoreArgs-loglevel ................... Passed 0.04 sec test 124 Start 124: PileupStats-IgnoreArgs-xmllog @@ -7744,8 +7776,7 @@ 124: 124: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/pileup-stats : 3.0.9 124: -124: /usr/bin/sh: 1: [: 3: unexpected operator - 66/187 Test #124: PileupStats-IgnoreArgs-xmllog ..................... Passed 0.00 sec + 66/187 Test #124: PileupStats-IgnoreArgs-xmllog ..................... Passed 0.04 sec test 125 Start 125: PileupStats-IgnoreArgs-xmllogfd @@ -7776,8 +7807,7 @@ 125: 125: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/pileup-stats : 3.0.9 125: -125: /usr/bin/sh: 1: [: 3: unexpected operator - 67/187 Test #125: PileupStats-IgnoreArgs-xmllogfd ................... Passed 0.00 sec + 67/187 Test #125: PileupStats-IgnoreArgs-xmllogfd ................... Passed 0.05 sec test 126 Start 126: test-vdb @@ -7830,8 +7860,8 @@ 126: RawData_value_badCast (0 s) 126: RawData_value (0 s) 126: -126: *** No errors detected (2 s total) - 68/187 Test #126: test-vdb .......................................... Passed 2.10 sec +126: *** No errors detected (4 s total) + 68/187 Test #126: test-vdb .......................................... Passed 4.72 sec test 127 Start 127: Test_NgsJava_lib_load @@ -7840,11 +7870,11 @@ 127: Test timeout computed to be: 1500 127: JUnit version 4.11 127: ......... -127: Time: 0.051 +127: Time: 0.156 127: 127: OK (9 tests) 127: - 69/187 Test #127: Test_NgsJava_lib_load ............................. Passed 0.20 sec + 69/187 Test #127: Test_NgsJava_lib_load ............................. Passed 0.83 sec test 131 Start 131: Test_Align_Info @@ -7884,7 +7914,7 @@ 131: 131: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/align-info : 3.0.9 131: - 70/187 Test #131: Test_Align_Info ................................... Passed 0.00 sec + 70/187 Test #131: Test_Align_Info ................................... Passed 0.03 sec test 132 Start 132: Test_Drivertool_BuildVersion @@ -7892,7 +7922,7 @@ 132: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool 132: Test timeout computed to be: 1500 132: Test_Version passed. - 71/187 Test #132: Test_Drivertool_BuildVersion ...................... Passed 0.00 sec + 71/187 Test #132: Test_Drivertool_BuildVersion ...................... Passed 0.02 sec test 133 Start 133: Test_Drivertool_FilePath @@ -7929,7 +7959,7 @@ 133: Executable_Yes (0 s) 133: 133: *** No errors detected (0 s total) - 72/187 Test #133: Test_Drivertool_FilePath .......................... Passed 0.00 sec + 72/187 Test #133: Test_Drivertool_FilePath .......................... Passed 0.03 sec test 134 Start 134: Test_Drivertool_CommandLine @@ -7937,35 +7967,35 @@ 134: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool 134: Test timeout computed to be: 1500 134: Test_CommandLine passed. - 73/187 Test #134: Test_Drivertool_CommandLine ....................... Passed 0.00 sec + 73/187 Test #134: Test_Drivertool_CommandLine ....................... Passed 0.02 sec test 135 Start 135: Test_Drivertool_JsonParsing 135: Test command: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test-bin/Test_Drivertool_JsonParsing 135: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool 135: Test timeout computed to be: 1500 - 74/187 Test #135: Test_Drivertool_JsonParsing ....................... Passed 0.01 sec + 74/187 Test #135: Test_Drivertool_JsonParsing ....................... Passed 0.05 sec test 136 Start 136: Test_Drivertool_SDLResponse 136: Test command: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test-bin/Test_Drivertool_SDLResponse 136: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool 136: Test timeout computed to be: 1500 - 75/187 Test #136: Test_Drivertool_SDLResponse ....................... Passed 0.00 sec + 75/187 Test #136: Test_Drivertool_SDLResponse ....................... Passed 0.01 sec test 137 Start 137: Test_Drivertool_Accession 137: Test command: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test-bin/Test_Drivertool_Accession 137: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool 137: Test timeout computed to be: 1500 - 76/187 Test #137: Test_Drivertool_Accession ......................... Passed 0.00 sec + 76/187 Test #137: Test_Drivertool_Accession ......................... Passed 0.01 sec test 138 Start 138: Test_Drivertool_UUID 138: Test command: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test-bin/Test_Drivertool_UUID 138: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/driver-tool 138: Test timeout computed to be: 1500 - 77/187 Test #138: Test_Drivertool_UUID .............................. Passed 0.41 sec + 77/187 Test #138: Test_Drivertool_UUID .............................. Passed 1.31 sec test 139 Start 139: Test_Drivertool_RunSource @@ -8002,7 +8032,7 @@ 139: ConstructSDL_Encrypted_NoNGC_Skipped (0 s) 139: 139: *** No errors detected (0 s total) - 78/187 Test #139: Test_Drivertool_RunSource ......................... Passed 0.01 sec + 78/187 Test #139: Test_Drivertool_RunSource ......................... Passed 0.02 sec test 140 Start 140: Test_Drivertool_ToolArgs @@ -8013,7 +8043,7 @@ 140: ParseArgs (0 s) 140: 140: *** No errors detected (0 s total) - 79/187 Test #140: Test_Drivertool_ToolArgs .......................... Passed 0.00 sec + 79/187 Test #140: Test_Drivertool_ToolArgs .......................... Passed 0.03 sec test 141 Start 141: Test_FasterqDump_Help @@ -8090,7 +8120,7 @@ 141: 141: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/fasterq-dump : 3.0.9 141: - 80/187 Test #141: Test_FasterqDump_Help ............................. Passed 0.00 sec + 80/187 Test #141: Test_FasterqDump_Help ............................. Passed 0.03 sec test 142 Start 142: Test_FasterqDump_NotZeroWithoutParameters @@ -8167,7 +8197,7 @@ 142: 142: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/fasterq-dump : 3.0.9 142: - 81/187 Test #142: Test_FasterqDump_NotZeroWithoutParameters ......... Passed 0.00 sec + 81/187 Test #142: Test_FasterqDump_NotZeroWithoutParameters ......... Passed 0.03 sec test 143 Start 143: Test_FasterDump_Fasta_unsorted_flat_tbl_read_id @@ -8180,7 +8210,7 @@ 143: READ_ID1: 10 143: READ_ID2: 10 143: success testing read-id for --fasta-unsorted mode on flat table - 82/187 Test #143: Test_FasterDump_Fasta_unsorted_flat_tbl_read_id ... Passed 0.18 sec + 82/187 Test #143: Test_FasterDump_Fasta_unsorted_flat_tbl_read_id ... Passed 0.90 sec test 144 Start 144: Test_FasterDump_Fasta_unsorted_cSRA_read_id @@ -8193,7 +8223,7 @@ 144: READ_ID1: 10 144: READ_ID2: 10 144: success testing read-id for --fasta-unsorted mode on cSRA table - 83/187 Test #144: Test_FasterDump_Fasta_unsorted_cSRA_read_id ....... Passed 0.48 sec + 83/187 Test #144: Test_FasterDump_Fasta_unsorted_cSRA_read_id ....... Passed 1.44 sec test 145 Start 145: Test_Tiny_cSRA @@ -8205,7 +8235,7 @@ 145: spots read : 3 145: reads read : 3 145: reads written : 3 - 84/187 Test #145: Test_Tiny_cSRA .................................... Passed 0.76 sec + 84/187 Test #145: Test_Tiny_cSRA .................................... Passed 3.32 sec test 159 Start 159: SamDumpTestSetup @@ -8213,21 +8243,21 @@ /LIBS/GUID="8test002-6ab7-41b2-bfd0-sam-dump-test"' > tmp.kfg" 159: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sam-dump 159: Test timeout computed to be: 1500 - 85/187 Test #159: SamDumpTestSetup .................................. Passed 0.00 sec + 85/187 Test #159: SamDumpTestSetup .................................. Passed 0.02 sec test 160 Start 160: Test_sam_dump_verify_omit 160: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sam-dump" "./verify_omit_qual.sh" "/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin" 160: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sam-dump 160: Test timeout computed to be: 1500 - 86/187 Test #160: Test_sam_dump_verify_omit ......................... Passed 1.08 sec + 86/187 Test #160: Test_sam_dump_verify_omit ......................... Passed 4.62 sec test 161 Start 161: Test_sam_dump_star_quality 161: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sam-dump" "./print_star_on_missing_qual.sh" "/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin" 161: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/sam-dump 161: Test timeout computed to be: 1500 - 87/187 Test #161: Test_sam_dump_star_quality ........................ Passed 0.71 sec + 87/187 Test #161: Test_sam_dump_star_quality ........................ Passed 2.99 sec test 162 Start 162: Test_Srapath_Check_exit_code @@ -8235,7 +8265,7 @@ 162: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/external/srapath 162: Test timeout computed to be: 1500 162: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/srapath] - 88/187 Test #162: Test_Srapath_Check_exit_code ...................... Passed 0.05 sec + 88/187 Test #162: Test_Srapath_Check_exit_code ...................... Passed 0.26 sec test 164 Start 164: Test_SraPileup_Check_exit_code @@ -8244,7 +8274,7 @@ 164: Test timeout computed to be: 1500 164: WARNING[TEST1] help message is in 'STDOUT' 164: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/sra-pileup] - 89/187 Test #164: Test_SraPileup_Check_exit_code .................... Passed 0.09 sec + 89/187 Test #164: Test_SraPileup_Check_exit_code .................... Passed 0.43 sec test 168 Start 168: Test_VDB_Config_model @@ -8268,7 +8298,7 @@ 168: 168: *** 1 failure detected in test suite "VdbConfStridesModelTestSuite" 168: VDB Copy model test is finished - 90/187 Test #168: Test_VDB_Config_model ............................. Passed 0.05 sec + 90/187 Test #168: Test_VDB_Config_model ............................. Passed 0.23 sec test 169 Start 169: Test_VDB_Config @@ -8277,7 +8307,7 @@ 169: Test timeout computed to be: 1500 169: Testing /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/vdb-config... 169: VDB config test is finished - 91/187 Test #169: Test_VDB_Config ................................... Passed 0.04 sec + 91/187 Test #169: Test_VDB_Config ................................... Passed 0.24 sec test 170 Start 170: Test_Vdb_dump_Check_exit_code @@ -8286,7 +8316,7 @@ 170: Test timeout computed to be: 1500 170: WARNING[TEST1] help message is in 'STDOUT' 170: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump] - 92/187 Test #170: Test_Vdb_dump_Check_exit_code ..................... Passed 0.09 sec + 92/187 Test #170: Test_Vdb_dump_Check_exit_code ..................... Passed 0.46 sec test 171 Start 171: Test_Vdb_dump_view-spec @@ -8317,7 +8347,7 @@ 171: NestedView (0 s) 171: 171: *** No errors detected (0 s total) - 93/187 Test #171: Test_Vdb_dump_view-spec ........................... Passed 0.05 sec + 93/187 Test #171: Test_Vdb_dump_view-spec ........................... Passed 0.41 sec test 174 Start 174: Test_VdbValidate_Unit @@ -8330,7 +8360,7 @@ 174: is_sorted_unsorted (0 s) 174: 174: *** No errors detected (0 s total) - 94/187 Test #174: Test_VdbValidate_Unit ............................. Passed 0.00 sec + 94/187 Test #174: Test_VdbValidate_Unit ............................. Passed 0.03 sec test 178 Start 178: Test_Sra_Info_Help @@ -8377,7 +8407,7 @@ 178: 178: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/sra-info : 3.0.9 178: - 95/187 Test #178: Test_Sra_Info_Help ................................ Passed 0.00 sec + 95/187 Test #178: Test_Sra_Info_Help ................................ Passed 0.03 sec test 179 Start 179: Test_Sra_Info_NoParam @@ -8391,7 +8421,7 @@ 179: 179: Use option --help for more information. 179: - 96/187 Test #179: Test_Sra_Info_NoParam ............................. Passed 0.04 sec + 96/187 Test #179: Test_Sra_Info_NoParam ............................. Passed 0.18 sec test 180 Start 180: Test_Sra_Info_MultipleParams @@ -8405,7 +8435,7 @@ 180: 180: Use option --help for more information. 180: - 97/187 Test #180: Test_Sra_Info_MultipleParams ...................... Passed 0.04 sec + 97/187 Test #180: Test_Sra_Info_MultipleParams ...................... Passed 0.18 sec test 181 Start 181: Test_Sra_Info_Limit_Negative @@ -8415,7 +8445,7 @@ 181: 181: 181: invalid value for --limit(not a positive number) - 98/187 Test #181: Test_Sra_Info_Limit_Negative ...................... Passed 0.04 sec + 98/187 Test #181: Test_Sra_Info_Limit_Negative ...................... Passed 0.17 sec test 182 Start 182: Test_Sra_Info_Limit_Zero @@ -8425,7 +8455,7 @@ 182: 182: 182: invalid value for --limit(not a positive number) - 99/187 Test #182: Test_Sra_Info_Limit_Zero .......................... Passed 0.04 sec + 99/187 Test #182: Test_Sra_Info_Limit_Zero .......................... Passed 0.19 sec test 188 Start 188: Test_Sra_Info_Platform_Format_CSV @@ -8434,7 +8464,7 @@ 188: Test timeout computed to be: 1500 188: running 4.1 188: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f csv 1>./actual/4.1/stdout 2>./actual/4.1/stderr -100/187 Test #188: Test_Sra_Info_Platform_Format_CSV ................. Passed 0.16 sec +100/187 Test #188: Test_Sra_Info_Platform_Format_CSV ................. Passed 0.76 sec test 189 Start 189: Test_Sra_Info_Platform_Format_XML @@ -8443,7 +8473,7 @@ 189: Test timeout computed to be: 1500 189: running 4.2 189: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f xml 1>./actual/4.2/stdout 2>./actual/4.2/stderr -101/187 Test #189: Test_Sra_Info_Platform_Format_XML ................. Passed 0.16 sec +101/187 Test #189: Test_Sra_Info_Platform_Format_XML ................. Passed 0.78 sec test 190 Start 190: Test_Sra_Info_Platform_Format_Json @@ -8452,7 +8482,7 @@ 190: Test timeout computed to be: 1500 190: running 4.3 190: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f json 1>./actual/4.3/stdout 2>./actual/4.3/stderr -102/187 Test #190: Test_Sra_Info_Platform_Format_Json ................ Passed 0.16 sec +102/187 Test #190: Test_Sra_Info_Platform_Format_Json ................ Passed 0.78 sec test 191 Start 191: Test_Sra_Info_Platform_Format_Tab @@ -8461,7 +8491,7 @@ 191: Test timeout computed to be: 1500 191: running 4.4 191: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f tab 1>./actual/4.4/stdout 2>./actual/4.4/stderr -103/187 Test #191: Test_Sra_Info_Platform_Format_Tab ................. Passed 0.16 sec +103/187 Test #191: Test_Sra_Info_Platform_Format_Tab ................. Passed 0.51 sec test 192 Start 192: Test_Sra_Info_IsAligned_No @@ -8470,7 +8500,7 @@ 192: Test timeout computed to be: 1500 192: running 5.1 192: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/sra-info -A SRR000123 1>./actual/5.1/stdout 2>./actual/5.1/stderr -104/187 Test #192: Test_Sra_Info_IsAligned_No ........................ Passed 1.05 sec +104/187 Test #192: Test_Sra_Info_IsAligned_No ........................ Passed 1.21 sec test 194 Start 194: Test_Sra_Info_Quality_Physical @@ -8479,7 +8509,7 @@ 194: Test timeout computed to be: 1500 194: running 6.1 194: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/sra-info --quality ./input/MultiPlatform.sra 1>./actual/6.1/stdout 2>./actual/6.1/stderr -105/187 Test #194: Test_Sra_Info_Quality_Physical .................... Passed 0.16 sec +105/187 Test #194: Test_Sra_Info_Quality_Physical .................... Passed 0.44 sec test 208 Start 208: Test_Sra_Info_Schema_Default @@ -8488,7 +8518,7 @@ 208: Test timeout computed to be: 1500 208: running 9.0 208: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/sra-info --schema input/MultiPlatform.sra 1>./actual/9.0/stdout 2>./actual/9.0/stderr -106/187 Test #208: Test_Sra_Info_Schema_Default ...................... Passed 0.14 sec +106/187 Test #208: Test_Sra_Info_Schema_Default ...................... Passed 0.38 sec test 209 Start 209: Test_Sra_Info_Schema_Json @@ -8497,7 +8527,7 @@ 209: Test timeout computed to be: 1500 209: running 9.1 209: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/sra-info --schema input/MultiPlatform.sra -fjson 1>./actual/9.1/stdout 2>./actual/9.1/stderr -107/187 Test #209: Test_Sra_Info_Schema_Json ......................... Passed 0.14 sec +107/187 Test #209: Test_Sra_Info_Schema_Json ......................... Passed 0.64 sec test 210 Start 210: Test_Sra_Info_Schema_Xml @@ -8506,7 +8536,7 @@ 210: Test timeout computed to be: 1500 210: running 9.2 210: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/sra-info --schema input/MultiPlatform.sra -fxml 1>./actual/9.2/stdout 2>./actual/9.2/stderr -108/187 Test #210: Test_Sra_Info_Schema_Xml .......................... Passed 0.14 sec +108/187 Test #210: Test_Sra_Info_Schema_Xml .......................... Passed 0.64 sec test 211 Start 211: Test_Sra_Info_ACPQS_Default @@ -8515,7 +8545,7 @@ 211: Test timeout computed to be: 1500 211: running 10.0 211: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/sra-info input/MultiPlatform.sra -ACPQS 1>./actual/10.0/stdout 2>./actual/10.0/stderr -109/187 Test #211: Test_Sra_Info_ACPQS_Default ....................... Passed 0.39 sec +109/187 Test #211: Test_Sra_Info_ACPQS_Default ....................... Passed 1.20 sec test 212 Start 212: Test_Sra_Info_ACPQS_Json @@ -8524,7 +8554,7 @@ 212: Test timeout computed to be: 1500 212: running 10.1 212: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/sra-info input/MultiPlatform.sra -ACPQS -fjson 1>./actual/10.1/stdout 2>./actual/10.1/stderr -110/187 Test #212: Test_Sra_Info_ACPQS_Json .......................... Passed 0.41 sec +110/187 Test #212: Test_Sra_Info_ACPQS_Json .......................... Passed 0.90 sec test 213 Start 213: Test_Sra_Info_ACPQS_Xml @@ -8533,7 +8563,7 @@ 213: Test timeout computed to be: 1500 213: running 10.2 213: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/sra-info input/MultiPlatform.sra -ACPQS -fxml 1>./actual/10.2/stdout 2>./actual/10.2/stderr -111/187 Test #213: Test_Sra_Info_ACPQS_Xml ........................... Passed 0.42 sec +111/187 Test #213: Test_Sra_Info_ACPQS_Xml ........................... Passed 1.49 sec test 214 Start 214: BamTestSetup @@ -8541,21 +8571,21 @@ /LIBS/GUID="8test002-6ab7-41b2-bfd0-bamfload"' > tmp.kfg" 214: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/bam-load 214: Test timeout computed to be: 1500 -112/187 Test #214: BamTestSetup ...................................... Passed 0.00 sec +112/187 Test #214: BamTestSetup ...................................... Passed 0.02 sec test 215 Start 215: Test_BamLoader_1 215: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/bam-load" "bash" "-c" "/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/bam-load -o out.sra test.sam" 215: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/bam-load 215: Test timeout computed to be: 1500 -113/187 Test #215: Test_BamLoader_1 .................................. Passed 0.25 sec +113/187 Test #215: Test_BamLoader_1 .................................. Passed 0.80 sec test 216 Start 216: Test_BamLoader_MinBatchSize 216: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/bam-load" "bash" "-c" "/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/bam-load -o out.sra --min-batch-size 999999 test.sam" 216: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/bam-load 216: Test timeout computed to be: 1500 -114/187 Test #216: Test_BamLoader_MinBatchSize ....................... Passed 0.27 sec +114/187 Test #216: Test_BamLoader_MinBatchSize ....................... Passed 1.24 sec test 217 Start 217: Test_BamLoader_MinBatchSize_Bad @@ -8575,15 +8605,15 @@ 217: 217: Use option --help for more information. 217: -217: 2026-01-20T10:25:43 bam-load.3.0.9 err: param incorrect while accessing argument list within application support module - load failed -115/187 Test #217: Test_BamLoader_MinBatchSize_Bad ................... Passed 0.03 sec +217: 2024-12-18T04:16:22 bam-load.3.0.9 err: param incorrect while accessing argument list within application support module - load failed +115/187 Test #217: Test_BamLoader_MinBatchSize_Bad ................... Passed 0.18 sec test 218 Start 218: Test_BamLoader_platform 218: Test command: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test-bin/Test_BamLoader_platform 218: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/bam-load 218: Test timeout computed to be: 1500 -116/187 Test #218: Test_BamLoader_platform ........................... Passed 0.00 sec +116/187 Test #218: Test_BamLoader_platform ........................... Passed 0.02 sec test 219 Start 219: LatfTestSetup @@ -8591,7 +8621,7 @@ /LIBS/GUID="8test002-6ab7-41b2-bfd0-latfload"' > tmp.kfg" 219: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader 219: Test timeout computed to be: 1500 -117/187 Test #219: LatfTestSetup ..................................... Passed 0.00 sec +117/187 Test #219: LatfTestSetup ..................................... Passed 0.01 sec test 220 Start 220: SlowTest_FastqLoader_id2name @@ -8613,7 +8643,7 @@ 220: AddRealloc (0 s) 220: 220: *** No errors detected (0 s total) -118/187 Test #220: SlowTest_FastqLoader_id2name ...................... Passed 0.01 sec +118/187 Test #220: SlowTest_FastqLoader_id2name ...................... Passed 0.05 sec test 221 Start 221: Test_FastqLoader_WbFastq_dflt @@ -8725,8 +8755,8 @@ 221: FastqMultiLineSequenceFasta (0 s) 221: FastqMultiLineSequenceFastq (0 s) 221: -221: *** No errors detected (0 s total) -119/187 Test #221: Test_FastqLoader_WbFastq_dflt ..................... Passed 0.20 sec +221: *** No errors detected (1 s total) +119/187 Test #221: Test_FastqLoader_WbFastq_dflt ..................... Passed 1.62 sec test 222 Start 222: Test_FastqLoader_WbFastqParse @@ -8753,7 +8783,7 @@ 222: Aviti (0 s) 222: 222: *** No errors detected (0 s total) -120/187 Test #222: Test_FastqLoader_WbFastqParse ..................... Passed 0.01 sec +120/187 Test #222: Test_FastqLoader_WbFastqParse ..................... Passed 0.04 sec test 223 Start 223: Test_FastqLoader_WbFastqLoader @@ -8765,18 +8795,18 @@ 223: Test timeout computed to be: 1500 223: Running 14 test cases... 223: CommonWriterOneFile (0 s) -223: 2026-01-20T10:25:43 Test_FastqLoader_WbFastqLoader.1.0.0 err: data inconsistent while reading file within application support module - Duplicate read name 'HWUSI-EAS499:1:3:9:1822' +223: 2024-12-18T04:16:25 Test_FastqLoader_WbFastqLoader.1.0.0 err: data inconsistent while reading file within application support module - Duplicate read name 'HWUSI-EAS499:1:3:9:1822' 223: CommonWriterDuplicateReadnames_Error (0 s) -223: 2026-01-20T10:25:43 Test_FastqLoader_WbFastqLoader.1.0.0 warn: Spot 'HWUSI-EAS499:1:3:9:1822' has already been assigned a spot id +223: 2024-12-18T04:16:25 Test_FastqLoader_WbFastqLoader.1.0.0 warn: Spot 'HWUSI-EAS499:1:3:9:1822' has already been assigned a spot id 223: CommonWriterDuplicateReadnames_Allowed (0 s) -223: 2026-01-20T10:25:43 Test_FastqLoader_WbFastqLoader.1.0.0 err: data inconsistent while reading file within application support module - Duplicate read name 'HWUSI-EAS499:1:3:9:1822' +223: 2024-12-18T04:16:26 Test_FastqLoader_WbFastqLoader.1.0.0 err: data inconsistent while reading file within application support module - Duplicate read name 'HWUSI-EAS499:1:3:9:1822' 223: CommonWriterDuplicateReadnames_SameFragment (0 s) 223: CommonWriterDuplicateReadnames_DiffFragment (0 s) -223: 2026-01-20T10:25:43 Test_FastqLoader_WbFastqLoader.1.0.0 warn: data inconsistent while reading file within application support module - Spot 'HWUSI-EAS499:1:3:9:1822', which was first seen with mate info, now has no mate info -223: 2026-01-20T10:25:43 Test_FastqLoader_WbFastqLoader.1.0.0 err: data invalid while closing table - Too many bad records: records: 2, bad records: 1, bad records percentage: 0.50, allowed percentage: 0.00 +223: 2024-12-18T04:16:26 Test_FastqLoader_WbFastqLoader.1.0.0 warn: data inconsistent while reading file within application support module - Spot 'HWUSI-EAS499:1:3:9:1822', which was first seen with mate info, now has no mate info +223: 2024-12-18T04:16:26 Test_FastqLoader_WbFastqLoader.1.0.0 err: data invalid while closing table - Too many bad records: records: 2, bad records: 1, bad records percentage: 0.50, allowed percentage: 0.00 223: CommonWriterDuplicateReadnames_MatedThenUnmated (0 s) -223: 2026-01-20T10:25:44 Test_FastqLoader_WbFastqLoader.1.0.0 warn: data inconsistent while reading file within application support module - Spot 'HWUSI-EAS499:1:3:9:1822', which was first seen without mate info, now has mate info -223: 2026-01-20T10:25:44 Test_FastqLoader_WbFastqLoader.1.0.0 err: data invalid while closing table - Too many bad records: records: 2, bad records: 1, bad records percentage: 0.50, allowed percentage: 0.00 +223: 2024-12-18T04:16:26 Test_FastqLoader_WbFastqLoader.1.0.0 warn: data inconsistent while reading file within application support module - Spot 'HWUSI-EAS499:1:3:9:1822', which was first seen without mate info, now has mate info +223: 2024-12-18T04:16:26 Test_FastqLoader_WbFastqLoader.1.0.0 err: data invalid while closing table - Too many bad records: records: 2, bad records: 1, bad records percentage: 0.50, allowed percentage: 0.00 223: CommonWriterDuplicateReadnames_UnmatedThenMated (0 s) 223: NoSpotAssemply (0 s) 223: NoSpotAssemply_case2 (0 s) @@ -8786,8 +8816,8 @@ 223: Interleaved_1_longer (0 s) 223: Interleaved_2_longer (0 s) 223: -223: *** No errors detected (1 s total) -121/187 Test #223: Test_FastqLoader_WbFastqLoader .................... Passed 1.59 sec +223: *** No errors detected (5 s total) +121/187 Test #223: Test_FastqLoader_WbFastqLoader .................... Passed 5.78 sec test 224 Start 224: Test_FastqLoader_1.1 @@ -8796,7 +8826,7 @@ 224: Test timeout computed to be: 1500 224: running 1.1 224: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/1.1.fastq --quality PHRED_33 -o ./actual/1.1/obj 1>./actual/1.1/load.stdout 2>./actual/1.1/load.stderr -122/187 Test #224: Test_FastqLoader_1.1 .............................. Passed 0.36 sec +122/187 Test #224: Test_FastqLoader_1.1 .............................. Passed 1.43 sec test 225 Start 225: Test_FastqLoader_1.2 @@ -8805,7 +8835,7 @@ 225: Test timeout computed to be: 1500 225: running 1.2 225: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/1.2.fastq --quality PHRED_64 -o ./actual/1.2/obj 1>./actual/1.2/load.stdout 2>./actual/1.2/load.stderr -123/187 Test #225: Test_FastqLoader_1.2 .............................. Passed 0.36 sec +123/187 Test #225: Test_FastqLoader_1.2 .............................. Passed 1.74 sec test 226 Start 226: Test_FastqLoader_1.3 @@ -8814,7 +8844,7 @@ 226: Test timeout computed to be: 1500 226: running 1.3 226: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/1.3.fastq --quality PHRED_33 -o ./actual/1.3/obj 1>./actual/1.3/load.stdout 2>./actual/1.3/load.stderr -124/187 Test #226: Test_FastqLoader_1.3 .............................. Passed 0.17 sec +124/187 Test #226: Test_FastqLoader_1.3 .............................. Passed 0.93 sec test 227 Start 227: Test_FastqLoader_1.4 @@ -8823,7 +8853,7 @@ 227: Test timeout computed to be: 1500 227: running 1.4 227: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/1.4.fastq --quality LOGODDS -o ./actual/1.4/obj 1>./actual/1.4/load.stdout 2>./actual/1.4/load.stderr -125/187 Test #227: Test_FastqLoader_1.4 .............................. Passed 0.36 sec +125/187 Test #227: Test_FastqLoader_1.4 .............................. Passed 1.74 sec test 228 Start 228: Test_FastqLoader_2.1 @@ -8832,7 +8862,7 @@ 228: Test timeout computed to be: 1500 228: running 2.1 228: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/2.1.fastq --quality PHRED_33 -o ./actual/2.1/obj 1>./actual/2.1/load.stdout 2>./actual/2.1/load.stderr -126/187 Test #228: Test_FastqLoader_2.1 .............................. Passed 0.35 sec +126/187 Test #228: Test_FastqLoader_2.1 .............................. Passed 1.67 sec test 229 Start 229: Test_FastqLoader_2.5 @@ -8841,7 +8871,7 @@ 229: Test timeout computed to be: 1500 229: running 2.5 229: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/2.5.fastq --quality PHRED_33 -o ./actual/2.5/obj 1>./actual/2.5/load.stdout 2>./actual/2.5/load.stderr -127/187 Test #229: Test_FastqLoader_2.5 .............................. Passed 0.36 sec +127/187 Test #229: Test_FastqLoader_2.5 .............................. Passed 1.49 sec test 230 Start 230: Test_FastqLoader_2.6 @@ -8850,7 +8880,7 @@ 230: Test timeout computed to be: 1500 230: running 2.6 230: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/2.6.fastq --quality PHRED_33 -o ./actual/2.6/obj 1>./actual/2.6/load.stdout 2>./actual/2.6/load.stderr -128/187 Test #230: Test_FastqLoader_2.6 .............................. Passed 0.36 sec +128/187 Test #230: Test_FastqLoader_2.6 .............................. Passed 1.49 sec test 231 Start 231: Test_FastqLoader_2.7 @@ -8859,7 +8889,7 @@ 231: Test timeout computed to be: 1500 231: running 2.7 231: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/2.7.fastq --quality PHRED_33 -o ./actual/2.7/obj 1>./actual/2.7/load.stdout 2>./actual/2.7/load.stderr -129/187 Test #231: Test_FastqLoader_2.7 .............................. Passed 0.18 sec +129/187 Test #231: Test_FastqLoader_2.7 .............................. Passed 0.74 sec test 232 Start 232: Test_FastqLoader_2.7.1 @@ -8868,7 +8898,7 @@ 232: Test timeout computed to be: 1500 232: running 2.7.1 232: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/2.7.fastq --quality PHRED_33 --allow_duplicates -o ./actual/2.7.1/obj 1>./actual/2.7.1/load.stdout 2>./actual/2.7.1/load.stderr -130/187 Test #232: Test_FastqLoader_2.7.1 ............................ Passed 0.36 sec +130/187 Test #232: Test_FastqLoader_2.7.1 ............................ Passed 1.67 sec test 233 Start 233: Test_FastqLoader_2.8.1 @@ -8877,7 +8907,7 @@ 233: Test timeout computed to be: 1500 233: running 2.8.1 233: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/2.8.1.fastq --quality PHRED_33 -o ./actual/2.8.1/obj 1>./actual/2.8.1/load.stdout 2>./actual/2.8.1/load.stderr -131/187 Test #233: Test_FastqLoader_2.8.1 ............................ Passed 0.36 sec +131/187 Test #233: Test_FastqLoader_2.8.1 ............................ Passed 1.38 sec test 234 Start 234: Test_FastqLoader_2.9 @@ -8886,7 +8916,7 @@ 234: Test timeout computed to be: 1500 234: running 2.9 234: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/2.9.fastq --quality PHRED_33 -o ./actual/2.9/obj 1>./actual/2.9/load.stdout 2>./actual/2.9/load.stderr -132/187 Test #234: Test_FastqLoader_2.9 .............................. Passed 0.17 sec +132/187 Test #234: Test_FastqLoader_2.9 .............................. Passed 0.88 sec test 235 Start 235: Test_FastqLoader_2.9.1 @@ -8895,7 +8925,7 @@ 235: Test timeout computed to be: 1500 235: running 2.9.1 235: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/2.9.1.fastq --quality PHRED_33 -o ./actual/2.9.1/obj 1>./actual/2.9.1/load.stdout 2>./actual/2.9.1/load.stderr -133/187 Test #235: Test_FastqLoader_2.9.1 ............................ Passed 0.17 sec +133/187 Test #235: Test_FastqLoader_2.9.1 ............................ Passed 0.97 sec test 236 Start 236: Test_FastqLoader_3.1 @@ -8904,15 +8934,15 @@ 236: Test timeout computed to be: 1500 236: running 3.1 236: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/3.1a.fastq input/3.1b.fastq --quality PHRED_33 -o ./actual/3.1/obj 1>./actual/3.1/load.stdout 2>./actual/3.1/load.stderr -134/187 Test #236: Test_FastqLoader_3.1 .............................. Passed 0.36 sec +134/187 Test #236: Test_FastqLoader_3.1 .............................. Passed 1.66 sec test 237 Start 237: Test_FastqLoader_4.1 237: Test command: /usr/bin/cmake "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader" "bash" "-c" "/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load ./input/4.fastq --tmpfs ./actual -v -o actual/4.1.obj --quality PHRED_33 2>&1 | grep "Path for scratch files: ./actual/key2id"" 237: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader 237: Test timeout computed to be: 1500 -237: 2026-01-20T10:25:49 latf-load.3.0.9: Path for scratch files: ./actual/key2id.3148611.1 -135/187 Test #237: Test_FastqLoader_4.1 .............................. Passed 0.18 sec +237: 2024-12-18T04:16:48 latf-load.3.0.9: Path for scratch files: ./actual/key2id.2770043.1 +135/187 Test #237: Test_FastqLoader_4.1 .............................. Passed 0.88 sec test 238 Start 238: Test_FastqLoader_4.2 @@ -8921,7 +8951,7 @@ 238: Test timeout computed to be: 1500 238: running 4.2 238: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/4.fastq --qual-quant 1:10,10:20,20:30,30:- --quality PHRED_33 -o ./actual/4.2/obj 1>./actual/4.2/load.stdout 2>./actual/4.2/load.stderr -136/187 Test #238: Test_FastqLoader_4.2 .............................. Passed 0.35 sec +136/187 Test #238: Test_FastqLoader_4.2 .............................. Passed 1.77 sec test 239 Start 239: Test_FastqLoader_4.3.1 @@ -8930,7 +8960,7 @@ 239: Test timeout computed to be: 1500 239: running 4.3.1 239: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/4.fastq --cache-size BIG --quality PHRED_33 -o ./actual/4.3.1/obj 1>./actual/4.3.1/load.stdout 2>./actual/4.3.1/load.stderr -137/187 Test #239: Test_FastqLoader_4.3.1 ............................ Passed 0.05 sec +137/187 Test #239: Test_FastqLoader_4.3.1 ............................ Passed 0.21 sec test 240 Start 240: Test_FastqLoader_4.5 @@ -8939,7 +8969,7 @@ 240: Test timeout computed to be: 1500 240: running 4.5 240: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/4.5.fastq --max-err-count 2 --quality PHRED_33 -o ./actual/4.5/obj 1>./actual/4.5/load.stdout 2>./actual/4.5/load.stderr -138/187 Test #240: Test_FastqLoader_4.5 .............................. Passed 0.17 sec +138/187 Test #240: Test_FastqLoader_4.5 .............................. Passed 0.94 sec test 241 Start 241: Test_FastqLoader_4.5.2 @@ -8948,7 +8978,7 @@ 241: Test timeout computed to be: 1500 241: running 4.5.2 241: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/4.5.2.fastq --platform ILLUMINA --quality PHRED_33 --max-err-count 2 -o ./actual/4.5.2/obj 1>./actual/4.5.2/load.stdout 2>./actual/4.5.2/load.stderr -139/187 Test #241: Test_FastqLoader_4.5.2 ............................ Passed 0.17 sec +139/187 Test #241: Test_FastqLoader_4.5.2 ............................ Passed 0.85 sec test 242 Start 242: Test_FastqLoader_4.6 @@ -8957,7 +8987,7 @@ 242: Test timeout computed to be: 1500 242: running 4.6 242: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/4.fastq -p LS454 --quality PHRED_33 -o ./actual/4.6/obj 1>./actual/4.6/load.stdout 2>./actual/4.6/load.stderr -140/187 Test #242: Test_FastqLoader_4.6 .............................. Passed 0.35 sec +140/187 Test #242: Test_FastqLoader_4.6 .............................. Passed 1.44 sec test 243 Start 243: Test_FastqLoader_4.6.1 @@ -8966,7 +8996,7 @@ 243: Test timeout computed to be: 1500 243: running 4.6.1 243: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/4.fastq -p SOMETHINGELSE --quality PHRED_33 -o ./actual/4.6.1/obj 1>./actual/4.6.1/load.stdout 2>./actual/4.6.1/load.stderr -141/187 Test #243: Test_FastqLoader_4.6.1 ............................ Passed 0.05 sec +141/187 Test #243: Test_FastqLoader_4.6.1 ............................ Passed 0.29 sec test 244 Start 244: Test_FastqLoader_4.7 @@ -8975,7 +9005,7 @@ 244: Test timeout computed to be: 1500 244: running 4.7 244: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/not_there --quality PHRED_33 -o ./actual/4.7/obj 1>./actual/4.7/load.stdout 2>./actual/4.7/load.stderr -142/187 Test #244: Test_FastqLoader_4.7 .............................. Passed 0.17 sec +142/187 Test #244: Test_FastqLoader_4.7 .............................. Passed 0.74 sec test 245 Start 245: Test_FastqLoader_4.8 @@ -8984,7 +9014,7 @@ 245: Test timeout computed to be: 1500 245: running 4.8 245: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/4.8.fastq --quality PHRED_33 --no-readnames -o ./actual/4.8/obj 1>./actual/4.8/load.stdout 2>./actual/4.8/load.stderr -143/187 Test #245: Test_FastqLoader_4.8 .............................. Passed 0.35 sec +143/187 Test #245: Test_FastqLoader_4.8 .............................. Passed 1.21 sec test 246 Start 246: Test_FastqLoader_5.0 @@ -8993,7 +9023,7 @@ 246: Test timeout computed to be: 1500 246: running 5.0 246: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/5.0.fastq.gz --quality PHRED_33 -o ./actual/5.0/obj 1>./actual/5.0/load.stdout 2>./actual/5.0/load.stderr -144/187 Test #246: Test_FastqLoader_5.0 .............................. Passed 0.35 sec +144/187 Test #246: Test_FastqLoader_5.0 .............................. Passed 1.21 sec test 247 Start 247: Test_FastqLoader_6.0 @@ -9002,7 +9032,7 @@ 247: Test timeout computed to be: 1500 247: running 6.0 247: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/6.0.fastq --quality PHRED_33 -o ./actual/6.0/obj 1>./actual/6.0/load.stdout 2>./actual/6.0/load.stderr -145/187 Test #247: Test_FastqLoader_6.0 .............................. Passed 0.36 sec +145/187 Test #247: Test_FastqLoader_6.0 .............................. Passed 1.31 sec test 248 Start 248: Test_FastqLoader_7.1 @@ -9011,7 +9041,7 @@ 248: Test timeout computed to be: 1500 248: running 7.1 248: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/7.1.fastq --platform=PACBIO --quality PHRED_33 -o ./actual/7.1/obj 1>./actual/7.1/load.stdout 2>./actual/7.1/load.stderr -146/187 Test #248: Test_FastqLoader_7.1 .............................. Passed 0.35 sec +146/187 Test #248: Test_FastqLoader_7.1 .............................. Passed 1.79 sec test 249 Start 249: Test_FastqLoader_7.2 @@ -9020,7 +9050,7 @@ 249: Test timeout computed to be: 1500 249: running 7.2 249: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/7.2.fastq --platform=PACBIO --quality PHRED_33 -o ./actual/7.2/obj 1>./actual/7.2/load.stdout 2>./actual/7.2/load.stderr -147/187 Test #249: Test_FastqLoader_7.2 .............................. Passed 0.40 sec +147/187 Test #249: Test_FastqLoader_7.2 .............................. Passed 1.83 sec test 250 Start 250: Test_FastqLoader_7.3 @@ -9029,7 +9059,7 @@ 250: Test timeout computed to be: 1500 250: running 7.3 250: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/7.3.fastq --platform=PACBIO --quality PHRED_33 -o ./actual/7.3/obj 1>./actual/7.3/load.stdout 2>./actual/7.3/load.stderr -148/187 Test #250: Test_FastqLoader_7.3 .............................. Passed 0.36 sec +148/187 Test #250: Test_FastqLoader_7.3 .............................. Passed 1.71 sec test 251 Start 251: Test_FastqLoader_8.0 @@ -9038,7 +9068,7 @@ 251: Test timeout computed to be: 1500 251: running 8.0 251: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/8.0.fastq --quality PHRED_33 -o ./actual/8.0/obj 1>./actual/8.0/load.stdout 2>./actual/8.0/load.stderr -149/187 Test #251: Test_FastqLoader_8.0 .............................. Passed 0.35 sec +149/187 Test #251: Test_FastqLoader_8.0 .............................. Passed 1.61 sec test 252 Start 252: Test_FastqLoader_8.1 @@ -9047,7 +9077,7 @@ 252: Test timeout computed to be: 1500 252: running 8.1 252: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/8.1.fastq --quality PHRED_33 -o ./actual/8.1/obj 1>./actual/8.1/load.stdout 2>./actual/8.1/load.stderr -150/187 Test #252: Test_FastqLoader_8.1 .............................. Passed 0.18 sec +150/187 Test #252: Test_FastqLoader_8.1 .............................. Passed 1.01 sec test 253 Start 253: Test_FastqLoader_9.0 @@ -9056,7 +9086,7 @@ 253: Test timeout computed to be: 1500 253: running 9.0 253: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/9.0.fastq --quality PHRED_33 -o ./actual/9.0/obj 1>./actual/9.0/load.stdout 2>./actual/9.0/load.stderr -151/187 Test #253: Test_FastqLoader_9.0 .............................. Passed 0.35 sec +151/187 Test #253: Test_FastqLoader_9.0 .............................. Passed 1.39 sec test 254 Start 254: Test_FastqLoader_10.0 @@ -9065,7 +9095,7 @@ 254: Test timeout computed to be: 1500 254: running 10.0 254: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/10.0.fastq --quality PHRED_33 -o ./actual/10.0/obj 1>./actual/10.0/load.stdout 2>./actual/10.0/load.stderr -152/187 Test #254: Test_FastqLoader_10.0 ............................. Passed 0.35 sec +152/187 Test #254: Test_FastqLoader_10.0 ............................. Passed 0.97 sec test 255 Start 255: Test_FastqLoader_11.0 @@ -9074,7 +9104,7 @@ 255: Test timeout computed to be: 1500 255: running 11.0 255: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/11.0.1.fasta input/11.0.2.fasta --quality PHRED_33 -o ./actual/11.0/obj 1>./actual/11.0/load.stdout 2>./actual/11.0/load.stderr -153/187 Test #255: Test_FastqLoader_11.0 ............................. Passed 0.35 sec +153/187 Test #255: Test_FastqLoader_11.0 ............................. Passed 1.53 sec test 256 Start 256: Test_FastqLoader_11.1 @@ -9083,7 +9113,7 @@ 256: Test timeout computed to be: 1500 256: running 11.1 256: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/11.1.1.fastq input/11.1.2.fastq --quality PHRED_33 -o ./actual/11.1/obj 1>./actual/11.1/load.stdout 2>./actual/11.1/load.stderr -154/187 Test #256: Test_FastqLoader_11.1 ............................. Passed 0.35 sec +154/187 Test #256: Test_FastqLoader_11.1 ............................. Passed 1.75 sec test 257 Start 257: Test_FastqLoader_12.0 @@ -9092,7 +9122,7 @@ 257: Test timeout computed to be: 1500 257: running 12.0 257: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/12.0.fastq --quality PHRED_33 --ignore-illumina-tags -o ./actual/12.0/obj 1>./actual/12.0/load.stdout 2>./actual/12.0/load.stderr -155/187 Test #257: Test_FastqLoader_12.0 ............................. Passed 0.35 sec +155/187 Test #257: Test_FastqLoader_12.0 ............................. Passed 1.60 sec test 258 Start 258: Test_FastqLoader_12.1 @@ -9101,7 +9131,7 @@ 258: Test timeout computed to be: 1500 258: running 12.1 258: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/12.1.fastq --quality PHRED_33 -o ./actual/12.1/obj 1>./actual/12.1/load.stdout 2>./actual/12.1/load.stderr -156/187 Test #258: Test_FastqLoader_12.1 ............................. Passed 0.36 sec +156/187 Test #258: Test_FastqLoader_12.1 ............................. Passed 1.45 sec test 259 Start 259: Test_FastqLoader_12.2 @@ -9110,7 +9140,7 @@ 259: Test timeout computed to be: 1500 259: running 12.2 259: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/12.2.fastq --quality PHRED_33 -o ./actual/12.2/obj 1>./actual/12.2/load.stdout 2>./actual/12.2/load.stderr -157/187 Test #259: Test_FastqLoader_12.2 ............................. Passed 0.34 sec +157/187 Test #259: Test_FastqLoader_12.2 ............................. Passed 1.35 sec test 260 Start 260: Test_FastqLoader_13.0 @@ -9119,7 +9149,7 @@ 260: Test timeout computed to be: 1500 260: running 13.0 260: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/13.0.fastq --quality PHRED_33 -o ./actual/13.0/obj 1>./actual/13.0/load.stdout 2>./actual/13.0/load.stderr -158/187 Test #260: Test_FastqLoader_13.0 ............................. Passed 0.35 sec +158/187 Test #260: Test_FastqLoader_13.0 ............................. Passed 1.44 sec test 261 Start 261: Test_FastqLoader_13.1 @@ -9128,7 +9158,7 @@ 261: Test timeout computed to be: 1500 261: running 13.1 261: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/13.1.fastq --quality PHRED_33 -o ./actual/13.1/obj 1>./actual/13.1/load.stdout 2>./actual/13.1/load.stderr -159/187 Test #261: Test_FastqLoader_13.1 ............................. Passed 0.36 sec +159/187 Test #261: Test_FastqLoader_13.1 ............................. Passed 1.63 sec test 262 Start 262: Test_FastqLoader_14.0 @@ -9137,7 +9167,7 @@ 262: Test timeout computed to be: 1500 262: running 14.0 262: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/14.0.fasta --quality PHRED_33 -o ./actual/14.0/obj 1>./actual/14.0/load.stdout 2>./actual/14.0/load.stderr -160/187 Test #262: Test_FastqLoader_14.0 ............................. Passed 0.35 sec +160/187 Test #262: Test_FastqLoader_14.0 ............................. Passed 1.77 sec test 263 Start 263: Test_FastqLoader_15.0 @@ -9146,7 +9176,7 @@ 263: Test timeout computed to be: 1500 263: running 15.0 263: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load ./input/15.0.fastq --quality PHRED_33 -o ./actual/15.0/obj 1>./actual/15.0/load.stdout 2>./actual/15.0/load.stderr -161/187 Test #263: Test_FastqLoader_15.0 ............................. Passed 0.41 sec +161/187 Test #263: Test_FastqLoader_15.0 ............................. Passed 1.83 sec test 264 Start 264: Test_FastqLoader_16.0 @@ -9155,7 +9185,7 @@ 264: Test timeout computed to be: 1500 264: running 16.0 264: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/16.0.fasta --quality PHRED_33 --platform=PACBIO -o ./actual/16.0/obj 1>./actual/16.0/load.stdout 2>./actual/16.0/load.stderr -162/187 Test #264: Test_FastqLoader_16.0 ............................. Passed 0.38 sec +162/187 Test #264: Test_FastqLoader_16.0 ............................. Passed 1.63 sec test 265 Start 265: Test_FastqLoader_16.1 @@ -9164,7 +9194,7 @@ 265: Test timeout computed to be: 1500 265: running 16.1 265: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/16.1.fastq --quality PHRED_33 --platform=PACBIO -o ./actual/16.1/obj 1>./actual/16.1/load.stdout 2>./actual/16.1/load.stderr -163/187 Test #265: Test_FastqLoader_16.1 ............................. Passed 0.36 sec +163/187 Test #265: Test_FastqLoader_16.1 ............................. Passed 1.60 sec test 266 Start 266: Test_FastqLoader_17.0 @@ -9173,7 +9203,7 @@ 266: Test timeout computed to be: 1500 266: running 17.0 266: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/17.0.fastq --quality PHRED_33 -o ./actual/17.0/obj 1>./actual/17.0/load.stdout 2>./actual/17.0/load.stderr -164/187 Test #266: Test_FastqLoader_17.0 ............................. Passed 0.17 sec +164/187 Test #266: Test_FastqLoader_17.0 ............................. Passed 0.53 sec test 267 Start 267: Test_FastqLoader_18.0 @@ -9182,7 +9212,7 @@ 267: Test timeout computed to be: 1500 267: running 18.0 267: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/fastq-loader/input/18.0.fastq --quality PHRED_33 -o ./actual/18.0/obj 1>./actual/18.0/load.stdout 2>./actual/18.0/load.stderr -165/187 Test #267: Test_FastqLoader_18.0 ............................. Passed 0.17 sec +165/187 Test #267: Test_FastqLoader_18.0 ............................. Passed 0.56 sec test 269 Start 269: Test_KAPP_qfile @@ -9193,7 +9223,7 @@ 269: queue-size : 1024 269: block-size : 0 269: chunk-size : 1024 -166/187 Test #269: Test_KAPP_qfile ................................... Passed 0.00 sec +166/187 Test #269: Test_KAPP_qfile ................................... Passed 0.01 sec test 270 Start 270: Test_LOADERFILE @@ -9208,7 +9238,7 @@ 270: KLoaderFile_noEolBeforeEof (0 s) 270: 270: *** No errors detected (7 s total) -167/187 Test #270: Test_LOADERFILE ................................... Passed 7.01 sec +167/187 Test #270: Test_LOADERFILE ................................... Passed 7.11 sec test 271 Start 271: Test_LOADER @@ -9220,7 +9250,7 @@ 271: LoaderMeta_WriteWithVersion (0 s) 271: 271: *** No errors detected (0 s total) -168/187 Test #271: Test_LOADER ....................................... Passed 0.04 sec +168/187 Test #271: Test_LOADER ....................................... Passed 0.20 sec test 272 Start 272: Test_sra_sort_meta_copy @@ -9228,7 +9258,7 @@ 272: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/loaders/sra-sort 272: Test timeout computed to be: 1500 272: Files before.xml and after.xml are identical -169/187 Test #272: Test_sra_sort_meta_copy ........................... Passed 4.43 sec +169/187 Test #272: Test_sra_sort_meta_copy ........................... Passed 9.81 sec test 273 Start 273: Test_Align_samextract @@ -9319,8 +9349,8 @@ 273: 273: Fuzz_Hangs (0 s) 273: -273: *** No errors detected (0 s total) -170/187 Test #273: Test_Align_samextract ............................. Passed 0.40 sec +273: *** No errors detected (1 s total) +170/187 Test #273: Test_Align_samextract ............................. Passed 1.11 sec test 275 Start 275: Test_Align_Cache @@ -9328,7 +9358,7 @@ 275: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/align-cache 275: Test timeout computed to be: 1500 275: testing align-cache -171/187 Test #275: Test_Align_Cache .................................. Passed 0.29 sec +171/187 Test #275: Test_Align_Cache .................................. Passed 1.47 sec test 276 Start 276: Test_KFF @@ -9340,7 +9370,7 @@ 276: MagicFileFormat (0 s) 276: 276: *** No errors detected (0 s total) -172/187 Test #276: Test_KFF .......................................... Passed 0.00 sec +172/187 Test #276: Test_KFF .......................................... Passed 0.04 sec test 277 Start 277: Test_Copycat_Help @@ -9469,7 +9499,7 @@ 277: 277: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/copycat : 3.0.9 277: -173/187 Test #277: Test_Copycat_Help ................................. Passed 0.00 sec +173/187 Test #277: Test_Copycat_Help ................................. Passed 0.02 sec test 278 Start 278: Test_Copycat_Bad_Name @@ -9478,7 +9508,7 @@ 278: Test timeout computed to be: 1500 278: testing copycat expected output for file name with % 278: copycat test file name with % succeeded -174/187 Test #278: Test_Copycat_Bad_Name ............................. Passed 0.05 sec +174/187 Test #278: Test_Copycat_Bad_Name ............................. Passed 0.12 sec test 279 Start 279: Test_Copycat_IdenticalCopy @@ -9487,7 +9517,7 @@ 279: Test timeout computed to be: 1500 279: testing copycat copy 279: copycat copy succeeded -175/187 Test #279: Test_Copycat_IdenticalCopy ........................ Passed 0.05 sec +175/187 Test #279: Test_Copycat_IdenticalCopy ........................ Passed 0.11 sec test 280 Start 280: Test_Copycat_FastqParser @@ -9496,7 +9526,7 @@ 280: Test timeout computed to be: 1500 280: testing copycat fastq parser 280: copycat fastq parser succeeded -176/187 Test #280: Test_Copycat_FastqParser .......................... Passed 0.12 sec +176/187 Test #280: Test_Copycat_FastqParser .......................... Passed 0.30 sec test 281 Start 281: Test_MakeReadFilter @@ -9504,7 +9534,7 @@ 281: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/make-read-filter 281: Test timeout computed to be: 1500 281: /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin /usr/lib/x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/test-bin/tmp -177/187 Test #281: Test_MakeReadFilter ............................... Passed 0.41 sec +177/187 Test #281: Test_MakeReadFilter ............................... Passed 1.63 sec test 282 Start 282: Test_Read_filter_redact_Check_exit_code @@ -9512,7 +9542,7 @@ 282: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/read-filter-redact 282: Test timeout computed to be: 1500 282: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/read-filter-redact] -178/187 Test #282: Test_Read_filter_redact_Check_exit_code ........... Passed 0.04 sec +178/187 Test #282: Test_Read_filter_redact_Check_exit_code ........... Passed 0.19 sec test 283 Start 283: Test_Read_filter_redact @@ -9520,7 +9550,7 @@ 283: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/read-filter-redact 283: Test timeout computed to be: 1500 283: Testing read-filter-redact from /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin -179/187 Test #283: Test_Read_filter_redact ........................... Passed 0.35 sec +179/187 Test #283: Test_Read_filter_redact ........................... Passed 1.26 sec test 284 Start 284: Test_VDB_Copy_Check_exit_code @@ -9528,16 +9558,16 @@ 284: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/vdb-copy 284: Test timeout computed to be: 1500 284: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/vdb-copy] -180/187 Test #284: Test_VDB_Copy_Check_exit_code ..................... Passed 0.04 sec +180/187 Test #284: Test_VDB_Copy_Check_exit_code ..................... Passed 0.21 sec test 286 Start 286: Test_VDB_Copy_Should_Fail_On_Invalid_Accession 286: Test command: /usr/bin/bash "-c" "./return_code_on_error.sh /build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin" 286: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/internal/vdb-copy 286: Test timeout computed to be: 1500 -286: 2026-01-20T10:26:11 vdb-copy.3.0.9 int: item not found while copying within virtual database module - the path 'NOT_EXISTING_DIR' cannot be opened as vdb-database or vdb-table +286: 2024-12-18T04:17:52 vdb-copy.3.0.9 int: item not found while copying within virtual database module - the path 'NOT_EXISTING_DIR' cannot be opened as vdb-database or vdb-table 286: SUCCESS: vdb-copy returned 3 if ask to copy a none-existing object. -181/187 Test #286: Test_VDB_Copy_Should_Fail_On_Invalid_Accession .... Passed 0.04 sec +181/187 Test #286: Test_VDB_Copy_Should_Fail_On_Invalid_Accession .... Passed 0.20 sec test 288 Start 288: Test_VDB_Diff_Check_exit_code @@ -9546,7 +9576,7 @@ 288: Test timeout computed to be: 1500 288: WARNING[TEST1] help message is in 'STDOUT' 288: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu/bin/vdb-diff] -182/187 Test #288: Test_VDB_Diff_Check_exit_code ..................... Passed 0.04 sec +182/187 Test #288: Test_VDB_Diff_Check_exit_code ..................... Passed 0.21 sec test 291 Start 291: Test_qa-stat @@ -9559,39 +9589,39 @@ 291: Testing with two biological read. 291: Testing with one biological and one technical read. 291: Testing with multiple layouts. -183/187 Test #291: Test_qa-stat ...................................... Passed 1.06 sec +183/187 Test #291: Test_qa-stat ...................................... Passed 4.95 sec test 292 Start 292: Test_Scripts_prepare-sra-names 292: Test command: /usr/bin/perl "test-prepare-sra-names.pl" 292: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/scripts 292: Test timeout computed to be: 1500 -184/187 Test #292: Test_Scripts_prepare-sra-names .................... Passed 0.11 sec +184/187 Test #292: Test_Scripts_prepare-sra-names .................... Passed 1.21 sec test 293 Start 293: Test_Scripts_fix-sra-names 293: Test command: /usr/bin/perl "test-fix-sra-names.pl" 293: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/scripts 293: Test timeout computed to be: 1500 -185/187 Test #293: Test_Scripts_fix-sra-names ........................ Passed 0.05 sec +185/187 Test #293: Test_Scripts_fix-sra-names ........................ Passed 0.60 sec test 294 Start 294: Test_Scripts_prepare-sra-names-py 294: Test command: /usr/bin/perl "test-prepare-sra-names-py.pl" 294: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/scripts 294: Test timeout computed to be: 1500 -186/187 Test #294: Test_Scripts_prepare-sra-names-py ................. Passed 0.42 sec +186/187 Test #294: Test_Scripts_prepare-sra-names-py ................. Passed 2.53 sec test 295 Start 295: Test_Scripts_fix-sra-names-py 295: Test command: /usr/bin/perl "test-fix-sra-names-py.pl" 295: Working Directory: /build/reproducible-path/sra-sdk-3.0.9+dfsg/test/scripts 295: Test timeout computed to be: 1500 -187/187 Test #295: Test_Scripts_fix-sra-names-py ..................... Passed 0.24 sec +187/187 Test #295: Test_Scripts_fix-sra-names-py ..................... Passed 1.09 sec 100% tests passed, 0 tests failed out of 187 -Total Test time (real) = 48.06 sec +Total Test time (real) = 165.04 sec make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake @@ -9602,7 +9632,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg' dh_auto_install - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/sra-sdk-3.0.9\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/sra-sdk-3.0.9\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/sra-sdk-3.0.9+dfsg -B/build/reproducible-path/sra-sdk-3.0.9+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -9647,105 +9677,105 @@ -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-ngs.so.3 -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-ngs.so -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/Read.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/PileupEventIterator.hpp -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/ReferenceSequence.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/ReferenceIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/PileupEvent.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/PileupIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/Statistics.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/StringItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/ReadCollectionItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/defs.h --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/ReferenceSequenceItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/StatisticsItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/FragmentItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/PileupEventItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/ReadItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/ErrorMsg.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/ReferenceItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/PileupItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/ReadGroupItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/AlignmentItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/Refcount.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/Package.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/win --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/win/atomic32.h --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/win/stdbool.h --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/ReadCollection.hpp -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/Reference.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/StringRef.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/FragmentIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/AlignmentIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/ReadGroup.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/Alignment.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/Fragment.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/ErrorMsg.hpp -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/Read.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/PileupEventIterator.hpp -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/ReferenceSequence.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/ReferenceIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/PileupEvent.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/PileupIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/Statistics.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/Package.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/ReadCollection.hpp -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/Reference.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/StringRef.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/FragmentIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/AlignmentIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/ReadGroup.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/Package.hpp -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/Alignment.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/Fragment.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/ReadIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/PileupEventIterator.hpp -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/Pileup.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/StringRef.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/Fragment.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/Read.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/PileupIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/ReadGroup.hpp -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/ReadGroupIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/ReferenceIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/FragmentIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/Statistics.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/ReadIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/PileupEvent.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/AlignmentIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/inl/ReadCollection.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/Package.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/Alignment.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/Pileup.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/StringRef.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/Fragment.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/Read.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/ErrorMsg.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/PileupIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/ReadGroup.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/ReadGroupIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/ReferenceIterator.hpp -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/Refcount.h --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/StringItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/AlignmentItf.h --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReferenceItf.h --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReadCollectionItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/FragmentItf.h +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReferenceSequenceItf.h +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReferenceSequenceItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/AlignmentItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReferenceItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/defs.h +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/FragmentItf.h +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReadItf.h -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/StringItf.h --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/PileupItf.h --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReferenceSequenceItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/StatisticsItf.h -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/VTable.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/PackageItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/StatisticsItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReferenceSequenceItf.h --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/PileupEventItf.h --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/FragmentItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/VTable.h --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/PileupEventItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ErrBlock.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReadItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReadGroupItf.h -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReadCollectionItf.h +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ErrBlock.h +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReadItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/PackageItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ErrorMsg.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReadItf.h --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReadGroupItf.h --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReferenceItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/PileupItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReadGroupItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/AlignmentItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ErrBlock.h -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/Refcount.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/StringItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/VTable.h +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ErrBlock.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReadCollectionItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/PileupItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/AlignmentItf.h +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/StatisticsItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/StatisticsItf.h +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/FragmentItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/PileupItf.h +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/PileupEventItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/ReferenceItf.h +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/itf/PileupEventItf.h +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/FragmentIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/Statistics.hpp -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/ReadIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/PileupEvent.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/ReferenceSequenceItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/AlignmentItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/ReferenceItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/defs.h +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/ReadItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/ErrorMsg.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/ReadGroupItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/Refcount.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/StringItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/ReadCollectionItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/PileupItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/StatisticsItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/FragmentItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/adapter/PileupEventItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/unix --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/unix/i386 --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/unix/i386/atomic32.h -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/unix/fat86 -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/unix/fat86/atomic32.h -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/unix/x86_64 -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/unix/x86_64/atomic32.h -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/unix/arm64 -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/unix/arm64/atomic32.h --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/PileupEventIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/Pileup.hpp --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/ReadGroupIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/unix/i386 +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/unix/i386/atomic32.h +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/win +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/win/atomic32.h +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/win/stdbool.h +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/AlignmentIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/include/ngs/ReadCollection.hpp -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/jar/ngs-java.jar -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/examples-java/examples/AlignTest.java -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/examples-java/examples/AlignSliceTest.java @@ -9759,70 +9789,70 @@ -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/examples-java/expected.txt -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/jar/ngs-examples.jar -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script-dir --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script-dir/jquery-ui.min.js --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script-dir/jquery-3.7.1.min.js --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script-dir/jquery-ui.min.css --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/tag-search-index.js --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/search.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script.js --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/constant-values.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/copy.svg --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/search.js --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/serialized-form.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov/nih --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov/nih/nlm --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov/nih/nlm/ncbi --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/NGS.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/LibDependencies.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-summary.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-tree.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/index.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/package-search-index.js --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/module-search-index.js --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/element-list --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/stylesheet.css +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/resources +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/resources/glass.png +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/resources/x.png -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/allpackages-index.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/element-list +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/help-doc.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/search-page.js -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReadCollection.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/Fragment.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/package-tree.html -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ErrorMsg.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReferenceSequence.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/PileupIterator.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/Fragment.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/Reference.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReadGroupIterator.html -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/AlignmentIterator.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/package-summary.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/PileupEventIterator.html -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/PileupEvent.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReferenceIterator.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/package-summary.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/Statistics.html -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/Alignment.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/PileupIterator.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/PileupEventIterator.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReadIterator.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReferenceSequence.html -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/Package.html -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/Pileup.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/Reference.html -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/Read.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/package-tree.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReadGroupIterator.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/FragmentIterator.html -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReadGroup.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/Statistics.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReadIterator.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/member-search-index.js --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/search-page.js --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/overview-tree.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/help-doc.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/type-search-index.js +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/FragmentIterator.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReferenceIterator.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReadCollection.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/package-search-index.js +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/constant-values.html -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/allclasses-index.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/overview-summary.html --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/resources --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/resources/x.png --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/resources/glass.png --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/link.svg -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/legal --- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/legal/ASSEMBLY_EXCEPTION -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/legal/jquery.md -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/legal/jqueryUI.md +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/legal/ASSEMBLY_EXCEPTION +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/search.js +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/type-search-index.js +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/serialized-form.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script.js +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/tag-search-index.js +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/link.svg +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov/nih +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov/nih/nlm +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov/nih/nlm/ncbi +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-tree.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/NGS.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/LibDependencies.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-summary.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/overview-summary.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/member-search-index.js +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/copy.svg -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/index-all.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script-dir +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script-dir/jquery-ui.min.css +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script-dir/jquery-ui.min.js +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script-dir/jquery-3.7.1.min.js +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/module-search-index.js +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/stylesheet.css +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/search.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/overview-tree.html +-- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/index.html -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/jar/ngs-doc.jar -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/jar/ngs-src.jar -- Installing: /build/reproducible-path/sra-sdk-3.0.9+dfsg/debian/tmp/usr/share/examples-python/AlignTest.py @@ -10122,235 +10152,235 @@ done ls -l debian/tmp/usr/bin total 66484 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 abi-dump -> abi-dump.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 abi-dump.3 -> abi-dump.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 269416 Jan 19 22:23 abi-dump.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 abi-load -> abi-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 abi-load.3 -> abi-load.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 641128 Jan 19 22:23 abi-load.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 19 22:26 align-cache -> align-cache.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Jan 19 22:26 align-cache.3 -> align-cache.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 249136 Jan 19 22:23 align-cache.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 19 22:26 align-info -> align-info.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 19 22:26 align-info.3 -> align-info.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 97336 Jan 19 22:23 align-info.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 bam-load -> bam-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 bam-load.3 -> bam-load.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 12839712 Jan 19 22:25 bam-load.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Jan 19 22:26 cache-mgr -> cache-mgr.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 19 22:26 cache-mgr.3 -> cache-mgr.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 124680 Jan 19 22:23 cache-mgr.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Jan 19 22:26 ccextract -> ccextract.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 19 22:26 ccextract.3 -> ccextract.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 272968 Jan 19 22:23 ccextract.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Jan 19 22:26 cg-load -> cg-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 19 22:26 cg-load.3 -> cg-load.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 657864 Jan 19 22:23 cg-load.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 19 22:26 check-corrupt -> check-corrupt.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 Jan 19 22:26 check-corrupt.3 -> check-corrupt.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 240184 Jan 19 22:23 check-corrupt.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 check-redact -> check-redact.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Jan 19 22:26 check-redact.3 -> check-redact.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 97824 Jan 19 22:23 check-redact.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Jan 19 22:26 copycat -> copycat.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 19 22:26 copycat.3 -> copycat.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 484080 Jan 19 22:23 copycat.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 crc32sum -> crc32sum.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 crc32sum.3 -> crc32sum.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 79384 Jan 19 22:23 crc32sum.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 22 Jan 19 22:26 dump-blob-boundaries -> dump-blob-boundaries.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 26 Jan 19 22:26 dump-blob-boundaries.3 -> dump-blob-boundaries.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 31552 Jan 19 22:23 dump-blob-boundaries.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 fastconv -> fastconv.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 fastconv.3 -> fastconv.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 5034112 Jan 19 22:24 fastconv.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 fasterq-dump -> fasterq-dump.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 907712 Jan 19 22:23 fasterq-dump-orig.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Jan 19 22:26 fasterq-dump.3 -> fasterq-dump.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 fasterq-dump.3.0.9 -> sratools.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 19 22:26 fastq-dump -> fastq-dump.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 349584 Jan 19 22:23 fastq-dump-orig.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 19 22:26 fastq-dump.3 -> fastq-dump.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 fastq-dump.3.0.9 -> sratools.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 19 22:26 fastq-load -> fastq-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 19 22:26 fastq-load.3 -> fastq-load.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 701176 Jan 19 22:23 fastq-load.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 19 22:26 general-loader -> general-loader.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 Jan 19 22:26 general-loader.3 -> general-loader.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 1362776 Jan 19 22:23 general-loader.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 helicos-load -> helicos-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Jan 19 22:26 helicos-load.3 -> helicos-load.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 607320 Jan 19 22:23 helicos-load.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 19 22:26 illumina-dump -> illumina-dump.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 Jan 19 22:26 illumina-dump.3 -> illumina-dump.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 255528 Jan 19 22:23 illumina-dump.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 19 22:26 illumina-load -> illumina-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 Jan 19 22:26 illumina-load.3 -> illumina-load.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 657584 Jan 19 22:23 illumina-load.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 5 Jan 19 22:26 kar -> kar.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 6 Jan 19 22:26 kar+ -> kar+.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 kar+.3 -> kar+.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 237952 Jan 19 22:23 kar+.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 kar+meta -> kar+meta.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 kar+meta.3 -> kar+meta.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 159056 Jan 19 22:23 kar+meta.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Jan 19 22:26 kar.3 -> kar.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 191112 Jan 19 22:23 kar.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Jan 19 22:26 kdb-index -> kdb-index.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 19 22:26 kdb-index.3 -> kdb-index.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 78400 Jan 19 22:23 kdb-index.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Jan 19 22:26 kdbmeta -> kdbmeta.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 19 22:26 kdbmeta.3 -> kdbmeta.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 124344 Jan 19 22:23 kdbmeta.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Jan 19 22:26 latf-load -> latf-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 19 22:26 latf-load.3 -> latf-load.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 508096 Jan 19 22:23 latf-load.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Jan 19 22:26 make-read-filter -> make-read-filter.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 22 Jan 19 22:26 make-read-filter.3 -> make-read-filter.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 158736 Jan 19 22:23 make-read-filter.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 7 Jan 19 22:26 md5cp -> md5cp.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Jan 19 22:26 md5cp.3 -> md5cp.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 89664 Jan 19 22:23 md5cp.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 meta-cmp -> meta-cmp.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 meta-cmp.3 -> meta-cmp.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 82024 Jan 19 22:23 meta-cmp.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Jan 19 22:26 meta-copy -> meta-copy.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 19 22:26 meta-copy.3 -> meta-copy.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 81952 Jan 19 22:23 meta-copy.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 19 22:26 meta-repair -> meta-repair.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Jan 19 22:26 meta-repair.3 -> meta-repair.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 135992 Jan 19 22:23 meta-repair.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 19 22:26 ngs-pileup -> ngs-pileup.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 19 22:26 ngs-pileup.3 -> ngs-pileup.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 2547992 Jan 19 22:24 ngs-pileup.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 19 22:26 pacbio-correct -> pacbio-correct.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 Jan 19 22:26 pacbio-correct.3 -> pacbio-correct.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 76024 Jan 19 22:23 pacbio-correct.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 19 22:26 pacbio-load -> pacbio-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Jan 19 22:26 pacbio-load.3 -> pacbio-load.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 476864 Jan 19 22:23 pacbio-load.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 19 22:26 pacbio-loadxml -> pacbio-loadxml.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 Jan 19 22:26 pacbio-loadxml.3 -> pacbio-loadxml.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 590968 Jan 19 22:23 pacbio-loadxml.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 pileup-stats -> pileup-stats.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Jan 19 22:26 pileup-stats.3 -> pileup-stats.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 2779880 Jan 19 22:24 pileup-stats.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 prefetch -> prefetch.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 466784 Jan 19 22:24 prefetch-orig.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 prefetch.3 -> prefetch.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 prefetch.3.0.9 -> sratools.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Jan 19 22:26 rcexplain -> rcexplain.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 19 22:26 rcexplain.3 -> rcexplain.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 67456 Jan 19 22:23 rcexplain.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 Jan 19 22:26 read-filter-redact -> read-filter-redact.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 24 Jan 19 22:26 read-filter-redact.3 -> read-filter-redact.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 111192 Jan 19 22:23 read-filter-redact.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 19 22:26 ref-variation -> ref-variation.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 Jan 19 22:26 ref-variation.3 -> ref-variation.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 2921088 Jan 19 22:24 ref-variation.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 rowwritetest -> rowwritetest.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Jan 19 22:26 rowwritetest.3 -> rowwritetest.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 88584 Jan 19 22:23 rowwritetest.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 sam-dump -> sam-dump.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 834504 Jan 19 22:23 sam-dump-orig.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 sam-dump.3 -> sam-dump.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 sam-dump.3.0.9 -> sratools.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Jan 19 22:26 samview -> samview.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 samview-util -> samview-util.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Jan 19 22:26 samview-util.3 -> samview-util.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 64128 Jan 19 22:23 samview-util.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 19 22:26 samview.3 -> samview.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 305680 Jan 19 22:23 samview.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 19 22:26 schema-replace -> schema-replace.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 Jan 19 22:26 schema-replace.3 -> schema-replace.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 82928 Jan 19 22:23 schema-replace.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 sff-dump -> sff-dump.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 sff-dump.3 -> sff-dump.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 234424 Jan 19 22:23 sff-dump.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 sff-load -> sff-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 sff-load.3 -> sff-load.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 652080 Jan 19 22:23 sff-load.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 sortreadtest -> sortreadtest.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Jan 19 22:26 sortreadtest.3 -> sortreadtest.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 79784 Jan 19 22:23 sortreadtest.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 sra-info -> sra-info.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 sra-info.3 -> sra-info.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 2263624 Jan 19 22:23 sra-info.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 19 22:26 sra-pileup -> sra-pileup.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 443728 Jan 19 22:23 sra-pileup-orig.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 19 22:26 sra-pileup.3 -> sra-pileup.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 sra-pileup.3.0.9 -> sratools.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 19 22:26 sra-search -> sra-search.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 19 22:26 sra-search.3 -> sra-search.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 3981768 Jan 19 22:24 sra-search.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 sra-sort -> sra-sort.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 19 22:26 sra-sort-cg -> sra-sort-cg.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Jan 19 22:26 sra-sort-cg.3 -> sra-sort-cg.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 808808 Jan 19 22:23 sra-sort-cg.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 sra-sort.3 -> sra-sort.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 808840 Jan 19 22:23 sra-sort.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 sra-stat -> sra-stat.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 sra-stat.3 -> sra-stat.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 338192 Jan 19 22:23 sra-stat.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Jan 19 22:26 srapath -> srapath.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 256120 Jan 19 22:23 srapath-orig.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 19 22:26 srapath.3 -> srapath.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 srapath.3.0.9 -> sratools.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 sratools -> sratools.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 sratools.3 -> sratools.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 5131504 Jan 19 22:23 sratools.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 srf-load -> srf-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 srf-load.3 -> srf-load.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 833144 Jan 19 22:23 srf-load.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 19 22:26 test-download -> test-download.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 Jan 19 22:26 test-download.3 -> test-download.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 93648 Jan 19 22:23 test-download.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 24 Jan 19 22:26 test-read-write-cursor -> test-read-write-cursor.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 28 Jan 19 22:26 test-read-write-cursor.3 -> test-read-write-cursor.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 75488 Jan 19 22:23 test-read-write-cursor.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 test-sra -> test-sra.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 test-sra.3 -> test-sra.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 343504 Jan 19 22:23 test-sra.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 8 Jan 19 22:26 testld -> testld.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 19 22:26 testld.3 -> testld.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 76472 Jan 19 22:23 testld.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Jan 19 22:26 txt2kdb -> txt2kdb.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 19 22:26 txt2kdb.3 -> txt2kdb.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 83256 Jan 19 22:23 txt2kdb.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 19 22:26 var-expand -> var-expand.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 19 22:26 var-expand.3 -> var-expand.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 1994376 Jan 19 22:24 var-expand.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 19 22:26 vdb-config -> vdb-config.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 19 22:26 vdb-config.3 -> vdb-config.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 2899248 Jan 19 22:24 vdb-config.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 vdb-copy -> vdb-copy.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 vdb-copy.3 -> vdb-copy.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 329672 Jan 19 22:23 vdb-copy.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 19 22:26 vdb-decrypt -> vdb-decrypt.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Jan 19 22:26 vdb-decrypt.3 -> vdb-decrypt.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 121584 Jan 19 22:23 vdb-decrypt.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 vdb-diff -> vdb-diff.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 vdb-diff.3 -> vdb-diff.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 155224 Jan 19 22:23 vdb-diff.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 vdb-dump -> vdb-dump.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 897936 Jan 19 22:23 vdb-dump-orig.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 vdb-dump.3 -> vdb-dump.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 vdb-dump.3.0.9 -> sratools.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 19 22:26 vdb-encrypt -> vdb-encrypt.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Jan 19 22:26 vdb-encrypt.3 -> vdb-encrypt.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 119952 Jan 19 22:23 vdb-encrypt.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 19 22:26 vdb-lock -> vdb-lock.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 vdb-lock.3 -> vdb-lock.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 68336 Jan 19 22:23 vdb-lock.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Jan 19 22:26 vdb-sql -> vdb-sql.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 19 22:26 vdb-sql.3 -> vdb-sql.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 5287424 Jan 19 22:25 vdb-sql.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 19 22:26 vdb-unlock -> vdb-unlock.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 19 22:26 vdb-unlock.3 -> vdb-unlock.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 68344 Jan 19 22:23 vdb-unlock.3.0.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 19 22:26 vdb-validate -> vdb-validate.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Jan 19 22:26 vdb-validate.3 -> vdb-validate.3.0.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 259912 Jan 19 22:23 vdb-validate.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 abi-dump -> abi-dump.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 abi-dump.3 -> abi-dump.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 269416 Dec 18 18:11 abi-dump.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 abi-load -> abi-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 abi-load.3 -> abi-load.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 641128 Dec 18 18:11 abi-load.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Dec 18 18:18 align-cache -> align-cache.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Dec 18 18:18 align-cache.3 -> align-cache.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 249136 Dec 18 18:11 align-cache.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Dec 18 18:18 align-info -> align-info.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Dec 18 18:18 align-info.3 -> align-info.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 97336 Dec 18 18:11 align-info.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 bam-load -> bam-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 bam-load.3 -> bam-load.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 12839712 Dec 18 18:14 bam-load.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Dec 18 18:18 cache-mgr -> cache-mgr.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Dec 18 18:18 cache-mgr.3 -> cache-mgr.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 124680 Dec 18 18:11 cache-mgr.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Dec 18 18:18 ccextract -> ccextract.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Dec 18 18:18 ccextract.3 -> ccextract.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 272968 Dec 18 18:11 ccextract.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Dec 18 18:18 cg-load -> cg-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Dec 18 18:18 cg-load.3 -> cg-load.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 657864 Dec 18 18:11 cg-load.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Dec 18 18:18 check-corrupt -> check-corrupt.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Dec 18 18:18 check-corrupt.3 -> check-corrupt.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 240184 Dec 18 18:11 check-corrupt.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 check-redact -> check-redact.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Dec 18 18:18 check-redact.3 -> check-redact.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 97824 Dec 18 18:11 check-redact.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Dec 18 18:18 copycat -> copycat.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Dec 18 18:18 copycat.3 -> copycat.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 484080 Dec 18 18:11 copycat.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 crc32sum -> crc32sum.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 crc32sum.3 -> crc32sum.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 79384 Dec 18 18:11 crc32sum.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 22 Dec 18 18:18 dump-blob-boundaries -> dump-blob-boundaries.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 26 Dec 18 18:18 dump-blob-boundaries.3 -> dump-blob-boundaries.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 31552 Dec 18 18:11 dump-blob-boundaries.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 fastconv -> fastconv.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 fastconv.3 -> fastconv.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 5034112 Dec 18 18:14 fastconv.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 fasterq-dump -> fasterq-dump.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 907712 Dec 18 18:11 fasterq-dump-orig.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Dec 18 18:18 fasterq-dump.3 -> fasterq-dump.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 fasterq-dump.3.0.9 -> sratools.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Dec 18 18:18 fastq-dump -> fastq-dump.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 349584 Dec 18 18:11 fastq-dump-orig.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Dec 18 18:18 fastq-dump.3 -> fastq-dump.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 fastq-dump.3.0.9 -> sratools.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Dec 18 18:18 fastq-load -> fastq-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Dec 18 18:18 fastq-load.3 -> fastq-load.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 701176 Dec 18 18:11 fastq-load.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Dec 18 18:18 general-loader -> general-loader.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Dec 18 18:18 general-loader.3 -> general-loader.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 1362776 Dec 18 18:11 general-loader.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 helicos-load -> helicos-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Dec 18 18:18 helicos-load.3 -> helicos-load.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 607320 Dec 18 18:11 helicos-load.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Dec 18 18:18 illumina-dump -> illumina-dump.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Dec 18 18:18 illumina-dump.3 -> illumina-dump.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 255528 Dec 18 18:11 illumina-dump.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Dec 18 18:18 illumina-load -> illumina-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Dec 18 18:18 illumina-load.3 -> illumina-load.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 657584 Dec 18 18:11 illumina-load.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 5 Dec 18 18:18 kar -> kar.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 6 Dec 18 18:18 kar+ -> kar+.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 kar+.3 -> kar+.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 237952 Dec 18 18:11 kar+.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 kar+meta -> kar+meta.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 kar+meta.3 -> kar+meta.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 159056 Dec 18 18:11 kar+meta.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Dec 18 18:18 kar.3 -> kar.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 191112 Dec 18 18:11 kar.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Dec 18 18:18 kdb-index -> kdb-index.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Dec 18 18:18 kdb-index.3 -> kdb-index.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 78400 Dec 18 18:11 kdb-index.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Dec 18 18:18 kdbmeta -> kdbmeta.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Dec 18 18:18 kdbmeta.3 -> kdbmeta.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 124344 Dec 18 18:11 kdbmeta.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Dec 18 18:18 latf-load -> latf-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Dec 18 18:18 latf-load.3 -> latf-load.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 508096 Dec 18 18:12 latf-load.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Dec 18 18:18 make-read-filter -> make-read-filter.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 22 Dec 18 18:18 make-read-filter.3 -> make-read-filter.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 158736 Dec 18 18:11 make-read-filter.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 7 Dec 18 18:18 md5cp -> md5cp.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Dec 18 18:18 md5cp.3 -> md5cp.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 89664 Dec 18 18:11 md5cp.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 meta-cmp -> meta-cmp.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 meta-cmp.3 -> meta-cmp.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 82024 Dec 18 18:11 meta-cmp.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Dec 18 18:18 meta-copy -> meta-copy.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Dec 18 18:18 meta-copy.3 -> meta-copy.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 81952 Dec 18 18:11 meta-copy.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Dec 18 18:18 meta-repair -> meta-repair.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Dec 18 18:18 meta-repair.3 -> meta-repair.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 135992 Dec 18 18:11 meta-repair.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Dec 18 18:18 ngs-pileup -> ngs-pileup.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Dec 18 18:18 ngs-pileup.3 -> ngs-pileup.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2547992 Dec 18 18:12 ngs-pileup.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Dec 18 18:18 pacbio-correct -> pacbio-correct.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Dec 18 18:18 pacbio-correct.3 -> pacbio-correct.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 76024 Dec 18 18:11 pacbio-correct.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Dec 18 18:18 pacbio-load -> pacbio-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Dec 18 18:18 pacbio-load.3 -> pacbio-load.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 476864 Dec 18 18:11 pacbio-load.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Dec 18 18:18 pacbio-loadxml -> pacbio-loadxml.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Dec 18 18:18 pacbio-loadxml.3 -> pacbio-loadxml.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 590968 Dec 18 18:11 pacbio-loadxml.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 pileup-stats -> pileup-stats.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Dec 18 18:18 pileup-stats.3 -> pileup-stats.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2779880 Dec 18 18:13 pileup-stats.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 prefetch -> prefetch.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 466784 Dec 18 18:12 prefetch-orig.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 prefetch.3 -> prefetch.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 prefetch.3.0.9 -> sratools.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Dec 18 18:18 rcexplain -> rcexplain.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Dec 18 18:18 rcexplain.3 -> rcexplain.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 67456 Dec 18 18:11 rcexplain.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Dec 18 18:18 read-filter-redact -> read-filter-redact.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 24 Dec 18 18:18 read-filter-redact.3 -> read-filter-redact.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 111192 Dec 18 18:11 read-filter-redact.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Dec 18 18:18 ref-variation -> ref-variation.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Dec 18 18:18 ref-variation.3 -> ref-variation.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2921088 Dec 18 18:13 ref-variation.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 rowwritetest -> rowwritetest.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Dec 18 18:18 rowwritetest.3 -> rowwritetest.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 88584 Dec 18 18:11 rowwritetest.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 sam-dump -> sam-dump.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 834504 Dec 18 18:11 sam-dump-orig.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 sam-dump.3 -> sam-dump.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 sam-dump.3.0.9 -> sratools.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Dec 18 18:18 samview -> samview.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 samview-util -> samview-util.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Dec 18 18:18 samview-util.3 -> samview-util.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 64128 Dec 18 18:11 samview-util.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Dec 18 18:18 samview.3 -> samview.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 305680 Dec 18 18:11 samview.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Dec 18 18:18 schema-replace -> schema-replace.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Dec 18 18:18 schema-replace.3 -> schema-replace.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 82928 Dec 18 18:11 schema-replace.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 sff-dump -> sff-dump.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 sff-dump.3 -> sff-dump.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 234424 Dec 18 18:11 sff-dump.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 sff-load -> sff-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 sff-load.3 -> sff-load.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 652080 Dec 18 18:11 sff-load.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 sortreadtest -> sortreadtest.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Dec 18 18:18 sortreadtest.3 -> sortreadtest.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 79784 Dec 18 18:11 sortreadtest.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 sra-info -> sra-info.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 sra-info.3 -> sra-info.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2263624 Dec 18 18:11 sra-info.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Dec 18 18:18 sra-pileup -> sra-pileup.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 443728 Dec 18 18:11 sra-pileup-orig.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Dec 18 18:18 sra-pileup.3 -> sra-pileup.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 sra-pileup.3.0.9 -> sratools.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Dec 18 18:18 sra-search -> sra-search.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Dec 18 18:18 sra-search.3 -> sra-search.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 3981768 Dec 18 18:13 sra-search.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 sra-sort -> sra-sort.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Dec 18 18:18 sra-sort-cg -> sra-sort-cg.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Dec 18 18:18 sra-sort-cg.3 -> sra-sort-cg.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 808808 Dec 18 18:11 sra-sort-cg.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 sra-sort.3 -> sra-sort.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 808840 Dec 18 18:11 sra-sort.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 sra-stat -> sra-stat.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 sra-stat.3 -> sra-stat.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 338192 Dec 18 18:11 sra-stat.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Dec 18 18:18 srapath -> srapath.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 256120 Dec 18 18:11 srapath-orig.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Dec 18 18:18 srapath.3 -> srapath.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 srapath.3.0.9 -> sratools.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 sratools -> sratools.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 sratools.3 -> sratools.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 5131504 Dec 18 18:12 sratools.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 srf-load -> srf-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 srf-load.3 -> srf-load.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 833144 Dec 18 18:11 srf-load.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Dec 18 18:18 test-download -> test-download.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Dec 18 18:18 test-download.3 -> test-download.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 93648 Dec 18 18:11 test-download.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 24 Dec 18 18:18 test-read-write-cursor -> test-read-write-cursor.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 28 Dec 18 18:18 test-read-write-cursor.3 -> test-read-write-cursor.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 75488 Dec 18 18:11 test-read-write-cursor.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 test-sra -> test-sra.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 test-sra.3 -> test-sra.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 343504 Dec 18 18:11 test-sra.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 8 Dec 18 18:18 testld -> testld.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Dec 18 18:18 testld.3 -> testld.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 76472 Dec 18 18:11 testld.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Dec 18 18:18 txt2kdb -> txt2kdb.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Dec 18 18:18 txt2kdb.3 -> txt2kdb.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 83256 Dec 18 18:11 txt2kdb.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Dec 18 18:18 var-expand -> var-expand.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Dec 18 18:18 var-expand.3 -> var-expand.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 1994376 Dec 18 18:13 var-expand.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Dec 18 18:18 vdb-config -> vdb-config.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Dec 18 18:18 vdb-config.3 -> vdb-config.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2899248 Dec 18 18:12 vdb-config.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 vdb-copy -> vdb-copy.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 vdb-copy.3 -> vdb-copy.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 329672 Dec 18 18:11 vdb-copy.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Dec 18 18:18 vdb-decrypt -> vdb-decrypt.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Dec 18 18:18 vdb-decrypt.3 -> vdb-decrypt.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 121584 Dec 18 18:11 vdb-decrypt.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 vdb-diff -> vdb-diff.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 vdb-diff.3 -> vdb-diff.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 155224 Dec 18 18:11 vdb-diff.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 vdb-dump -> vdb-dump.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 897936 Dec 18 18:11 vdb-dump-orig.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 vdb-dump.3 -> vdb-dump.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 vdb-dump.3.0.9 -> sratools.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Dec 18 18:18 vdb-encrypt -> vdb-encrypt.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Dec 18 18:18 vdb-encrypt.3 -> vdb-encrypt.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 119952 Dec 18 18:11 vdb-encrypt.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Dec 18 18:18 vdb-lock -> vdb-lock.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 vdb-lock.3 -> vdb-lock.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 68336 Dec 18 18:11 vdb-lock.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Dec 18 18:18 vdb-sql -> vdb-sql.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Dec 18 18:18 vdb-sql.3 -> vdb-sql.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 5287424 Dec 18 18:14 vdb-sql.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Dec 18 18:18 vdb-unlock -> vdb-unlock.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Dec 18 18:18 vdb-unlock.3 -> vdb-unlock.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 68344 Dec 18 18:11 vdb-unlock.3.0.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Dec 18 18:18 vdb-validate -> vdb-validate.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Dec 18 18:18 vdb-validate.3 -> vdb-validate.3.0.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 259912 Dec 18 18:11 vdb-validate.3.0.9 cd debian/tmp/usr/bin && \ for bin in *-orig.* ; do \ base=${bin%-orig.*} && \ @@ -10615,16 +10645,16 @@ dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake -dpkg-shlibdeps: warning: symbol KMDataNodeReadAttr used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries -dpkg-shlibdeps: warning: symbol xcParamNull used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries -dpkg-shlibdeps: warning: symbol xcWrongReference used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries -dpkg-shlibdeps: warning: symbol VDatabaseAddRef used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries -dpkg-shlibdeps: warning: symbol VCursorIdRange used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries -dpkg-shlibdeps: warning: symbol KMetadataOpenNodeRead used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries -dpkg-shlibdeps: warning: symbol string_printf used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries -dpkg-shlibdeps: warning: symbol xcStringEmpty used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries -dpkg-shlibdeps: warning: symbol VCursorRelease used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries -dpkg-shlibdeps: warning: symbol KRsrcGlobalWhack used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries +dpkg-shlibdeps: warning: symbol KMDataNodeRead used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries +dpkg-shlibdeps: warning: symbol KClientHttpResultGetInputStream used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries +dpkg-shlibdeps: warning: symbol VTableRelease used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries +dpkg-shlibdeps: warning: symbol xcColumnEmpty used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries +dpkg-shlibdeps: warning: symbol KRsrcGlobalInit used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries +dpkg-shlibdeps: warning: symbol KRefcountDrop used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries +dpkg-shlibdeps: warning: symbol ctx_what used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries +dpkg-shlibdeps: warning: symbol DLListPopHead used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries +dpkg-shlibdeps: warning: symbol xcIntegerOutOfBounds used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries +dpkg-shlibdeps: warning: symbol KClientHttpResultStatus used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.0.9 found in none of the libraries dpkg-shlibdeps: warning: 133 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake @@ -10633,14 +10663,14 @@ dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'sra-toolkit-dbgsym' in '../sra-toolkit-dbgsym_3.0.9+dfsg-7_amd64.deb'. -dpkg-deb: building package 'sra-toolkit' in '../sra-toolkit_3.0.9+dfsg-7_amd64.deb'. +dpkg-deb: building package 'libngs-c++-dev' in '../libngs-c++-dev_3.0.9+dfsg-7_amd64.deb'. dpkg-deb: building package 'libngs-c++3' in '../libngs-c++3_3.0.9+dfsg-7_amd64.deb'. +dpkg-deb: building package 'sra-toolkit' in '../sra-toolkit_3.0.9+dfsg-7_amd64.deb'. dpkg-deb: building package 'libngs-c++3-dbgsym' in '../libngs-c++3-dbgsym_3.0.9+dfsg-7_amd64.deb'. -dpkg-deb: building package 'libngs-c++-dev' in '../libngs-c++-dev_3.0.9+dfsg-7_amd64.deb'. -dpkg-deb: building package 'libncbi-ngs3' in '../libncbi-ngs3_3.0.9+dfsg-7_amd64.deb'. dpkg-deb: building package 'libncbi-ngs3-dbgsym' in '../libncbi-ngs3-dbgsym_3.0.9+dfsg-7_amd64.deb'. -dpkg-deb: building package 'libncbi-ngs-dev' in '../libncbi-ngs-dev_3.0.9+dfsg-7_amd64.deb'. dpkg-deb: building package 'libngs-java' in '../libngs-java_3.0.9+dfsg-7_amd64.deb'. +dpkg-deb: building package 'libncbi-ngs-dev' in '../libncbi-ngs-dev_3.0.9+dfsg-7_amd64.deb'. +dpkg-deb: building package 'libncbi-ngs3' in '../libncbi-ngs3_3.0.9+dfsg-7_amd64.deb'. dpkg-deb: building package 'libngs-jni' in '../libngs-jni_3.0.9+dfsg-7_amd64.deb'. dpkg-deb: building package 'libngs-java-doc' in '../libngs-java-doc_3.0.9+dfsg-7_all.deb'. dpkg-deb: building package 'python3-ngs' in '../python3-ngs_3.0.9+dfsg-7_all.deb'. @@ -10651,12 +10681,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2728569/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2728569/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3088200 and its subdirectories -I: Current time: Mon Jan 19 22:26:45 -12 2026 -I: pbuilder-time-stamp: 1768904805 +I: removing directory /srv/workspace/pbuilder/2728569 and its subdirectories +I: Current time: Wed Dec 18 18:20:21 +14 2024 +I: pbuilder-time-stamp: 1734495621