Diff of the two buildlogs: -- --- b1/build.log 2025-03-15 13:08:15.069756725 +0000 +++ b2/build.log 2025-03-15 13:33:07.590662028 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Apr 17 07:07:57 -12 2026 -I: pbuilder-time-stamp: 1776452877 +I: Current time: Sun Mar 16 03:08:17 +14 2025 +I: pbuilder-time-stamp: 1742044097 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying debian_seqan340 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2357/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/351269/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 15 13:08 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/351269/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/351269/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='774f939057a340388ac06c403d54702c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2357' - PS1='# ' - PS2='> ' + INVOCATION_ID=603d7dd1467e458996b1ee73fbd640c7 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=351269 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MDZ537T0/pbuilderrc_KLSc --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MDZ537T0/b1 --logfile b1/build.log seqan-raptor_3.0.1+ds-9.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MDZ537T0/pbuilderrc_cVr7 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MDZ537T0/b2 --logfile b2/build.log seqan-raptor_3.0.1+ds-9.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2357/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/351269/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -332,7 +364,7 @@ Get: 181 http://deb.debian.org/debian trixie/main amd64 texlive-pictures all 2024.20250114-1 [17.1 MB] Get: 182 http://deb.debian.org/debian trixie/main amd64 texlive-latex-extra all 2024.20250114-1 [24.7 MB] Get: 183 http://deb.debian.org/debian trixie/main amd64 texlive-plain-generic all 2024.20250114-1 [28.9 MB] -Fetched 279 MB in 1min 3s (4465 kB/s) +Fetched 279 MB in 8s (33.5 MB/s) Preconfiguring packages ... Selecting previously unselected package poppler-data. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19803 files and directories currently installed.) @@ -945,8 +977,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Apr 17 19:13:15 UTC 2026. -Universal Time is now: Fri Apr 17 19:13:15 UTC 2026. +Local time is now: Sat Mar 15 13:11:44 UTC 2025. +Universal Time is now: Sat Mar 15 13:11:44 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... @@ -1109,7 +1141,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/seqan-raptor-3.0.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan-raptor_3.0.1+ds-9_source.changes +I: user script /srv/workspace/pbuilder/351269/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/351269/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/seqan-raptor-3.0.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqan-raptor_3.0.1+ds-9_source.changes dpkg-buildpackage: info: source package seqan-raptor dpkg-buildpackage: info: source version 3.0.1+ds-9 dpkg-buildpackage: info: source distribution unstable @@ -1178,7 +1214,7 @@ -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'libxxhash' -- Found libxxhash, version 0.8.3 --- Configuring done (15.4s) +-- Configuring done (6.7s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -1233,8 +1269,8 @@ -- Checking for module 'libxxhash' -- Found libxxhash, version 0.8.3 -- Test dependency: Google Test 1.15.0 found. --- Configuring done (8.7s) --- Generating done (0.2s) +-- Configuring done (11.1s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -1290,7 +1326,7 @@ -- Checking for module 'libxxhash' -- Found libxxhash, version 0.8.3 -- Test dependency: Google Test 1.15.0 found. --- Configuring done (7.5s) +-- Configuring done (11.8s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -1322,7 +1358,7 @@ -- Could not find dot tool. Disabling dot support. -- Configuring doc. -- Add doc test. --- Configuring done (0.2s) +-- Configuring done (0.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -1341,7 +1377,7 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_build --arch - cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds -B/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -1350,35 +1386,32 @@ make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/depend make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend +make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake "--color=" -make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/depend -make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake "--color=" -make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake "--color=" -make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/prepare /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/prepare/CMakeFiles/raptor_prepare.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake "--color=" +make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend +make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend +make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/build -make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Nothing to be done for '_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build'. make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' @@ -1386,102 +1419,72 @@ make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build +make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build -[ 3%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -[ 3%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -[ 5%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o +make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -[ 7%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem 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src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde 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src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/bin_size_in_bits.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong 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+make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +[ 0%] Built target xxhash_project +[ 1%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o +[ 3%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o +make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/depend +[ 7%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem 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-Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp -[ 29%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -[ 29%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/compute_bin_size.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem 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-D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -MF CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o.d -o CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade/raptor_upgrade.cpp -[ 31%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem 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/usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/build_parsing.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -MF CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o.d -o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/pascal_row.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include 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CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/upgrade_parsing.cpp -[ 43%] Built target xxhash_project -[ 47%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -[ 47%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem 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src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o -make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/depend cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp -[ 60%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o +[ 27%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o +[ 29%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -MF CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o.d -o CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare/compute_minimiser.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_threshold.cpp -[ 62%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem 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CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_partitioned_ibf.cpp -[ 62%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 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src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o +[ 31%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects 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/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/upgrade_parsing.cpp +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/bin_size_in_bits.cpp +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_error_model.cpp +[ 35%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_partitioned_ibf.cpp +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_indirect_error_model.cpp make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -[ 66%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o +[ 37%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp +[ 39%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -std=gnu++23 -pedantic -Wall -Wextra -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -MF CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o.d -o CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper_layout.cpp +[ 41%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -MF CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o.d -o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/pascal_row.cpp +[ 43%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_correction.cpp +[ 45%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_threshold.cpp +[ 47%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/compute_kmers.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator<std::input_iterator_tag, T> { - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/vector:62, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator<std::input_iterator_tag, T> { | ^~~~~~~~ @@ -1492,9 +1495,27 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /usr/include/simde/x86/mmx.h:30, + from /usr/include/simde/x86/sse.h:33, + from /usr/include/simde/x86/avx.h:28, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:21, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/layout/hibf_statistics.hpp:15, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper_layout.cpp:9: +/usr/include/simde/x86/../simde-common.h:610:30: warning: ISO C++ does not support ‘__int128’ for ‘simde_poly128’ [-Wpedantic] + 610 | # define SIMDE_POLY128_TYPE __int128 + | ^~~~~~~~ +/usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ + 616 | typedef SIMDE_POLY128_TYPE simde_poly128; + | ^~~~~~~~~~~~~~~~~~ +[ 49%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp +[ 50%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp +[ 52%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator<std::input_iterator_tag, T> { | ^~~~~~~~ @@ -1505,9 +1526,29 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +[ 54%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/insert_into_ibf.cpp +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:16: +/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] + 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags +/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define +/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes +/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ +/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] + 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 56%] Linking CXX static library ../../lib/libraptor_threshold.a +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o +/usr/bin/ranlib ../../lib/libraptor_threshold.a +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator<std::input_iterator_tag, T> { | ^~~~~~~~ @@ -1518,9 +1559,12 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +[ 56%] Built target raptor_threshold +[ 58%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator<std::input_iterator_tag, T> { | ^~~~~~~~ @@ -1544,45 +1588,8 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:17: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator<std::input_iterator_tag, T> { - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/algorithm:60, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:13: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator<std::input_iterator_tag, T> { - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/vector:62, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /usr/include/simde/x86/mmx.h:30, - from /usr/include/simde/x86/sse.h:33, - from /usr/include/simde/x86/avx.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:21, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/layout/hibf_statistics.hpp:15, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper_layout.cpp:9: -/usr/include/simde/x86/../simde-common.h:610:30: warning: ISO C++ does not support ‘__int128’ for ‘simde_poly128’ [-Wpedantic] - 610 | # define SIMDE_POLY128_TYPE __int128 - | ^~~~~~~~ -/usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ - 616 | typedef SIMDE_POLY128_TYPE simde_poly128; - | ^~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1593,8 +1600,8 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_user_bins.hpp:15, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:15: +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1605,8 +1612,8 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/hierarchical_build.hpp:18, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:17: +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1617,8 +1624,8 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:16: +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/hierarchical_build.hpp:18, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1629,6 +1636,73 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 60%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:17: +/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] + 20 | : public T, public std::iterator<std::input_iterator_tag, T> { + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/algorithm:60, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:13: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +[ 62%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp +[ 64%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp +[ 66%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_parent_kmers.cpp +[ 68%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp +[ 70%] Linking CXX static library ../../lib/libraptor_prepare.a +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/prepare && /usr/bin/cmake -P CMakeFiles/raptor_prepare.dir/cmake_clean_target.cmake +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/prepare && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_prepare.dir/link.txt --verbose=1 +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:13: +/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] + 20 | : public T, public std::iterator<std::input_iterator_tag, T> { + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/vector:62, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/usr/bin/ar qc ../../lib/libraptor_prepare.a CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o +/usr/bin/ranlib ../../lib/libraptor_prepare.a +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +[ 70%] Built target raptor_prepare +make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +[ 72%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -MF CMakeFiles/raptor_build.dir/build_ibf.cpp.o.d -o CMakeFiles/raptor_build.dir/build_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/build_ibf.cpp +[ 74%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -MF CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o.d -o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/max_count_per_partition.cpp +[ 76%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/raptor_build.cpp +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:13: +/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] + 20 | : public T, public std::iterator<std::input_iterator_tag, T> { + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/vector:62, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/read_chopper_pack_file.hpp:17, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] @@ -1641,27 +1715,11 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 68%] Linking CXX static library ../../lib/libraptor_threshold.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1 -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:16: -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -/usr/bin/ranlib ../../lib/libraptor_threshold.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -[ 68%] Built target raptor_threshold -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:16: +[ 78%] Linking CXX static library ../../../lib/libchopper_layout_lib.a +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1 +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_user_bins.hpp:15, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:15: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1672,65 +1730,40 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 70%] Linking CXX static library ../../lib/libraptor_prepare.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/prepare && /usr/bin/cmake -P CMakeFiles/raptor_prepare.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/prepare && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_prepare.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_prepare.a CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -/usr/bin/ranlib ../../lib/libraptor_prepare.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -[ 70%] Built target raptor_prepare -make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -[ 72%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/raptor_build.cpp -[ 74%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -MF CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o.d -o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/max_count_per_partition.cpp -[ 76%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -MF CMakeFiles/raptor_build.dir/build_ibf.cpp.o.d -o CMakeFiles/raptor_build.dir/build_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/build_ibf.cpp -[ 78%] Linking CXX static library ../../../lib/libraptor_build_hibf.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -/usr/bin/ranlib ../../../lib/libraptor_build_hibf.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -[ 78%] Built target raptor_build_hibf -[ 80%] Linking CXX static library ../../../lib/libchopper_layout_lib.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1 -[ 82%] Linking CXX static library ../../lib/libraptor_search.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libchopper_layout_lib.a CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o /usr/bin/ranlib ../../../lib/libchopper_layout_lib.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -[ 82%] Built target chopper_layout_lib +[ 78%] Built target chopper_layout_lib make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/depend -make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/depend cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/layout /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/layout/CMakeFiles/raptor_layout.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -[ 84%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o -[ 86%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/layout && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -MF CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o.d -o CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout/raptor_layout.cpp +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +[ 80%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -std=gnu++23 -pedantic -Wall -Wextra -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o -MF CMakeFiles/chopper.dir/chopper.cpp.o.d -o CMakeFiles/chopper.dir/chopper.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper.cpp +[ 82%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/layout && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -MF CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o.d -o CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout/raptor_layout.cpp +[ 84%] Linking CXX static library ../../lib/libraptor_search.a +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1 +[ 86%] Linking CXX static library ../../../lib/libraptor_build_hibf.a +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_search.a CMakeFiles/raptor_search.dir/raptor_search.cpp.o CMakeFiles/raptor_search.dir/search_hibf.cpp.o CMakeFiles/raptor_search.dir/search_ibf.cpp.o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o /usr/bin/ranlib ../../lib/libraptor_search.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 86%] Built target raptor_search -[ 88%] Linking CXX static library ../../lib/libraptor_build.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/cmake -P CMakeFiles/raptor_build.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o +/usr/bin/ranlib ../../../lib/libraptor_build_hibf.a +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +[ 86%] Built target raptor_build_hibf In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, @@ -1744,17 +1777,20 @@ /usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ 616 | typedef SIMDE_POLY128_TYPE simde_poly128; | ^~~~~~~~~~~~~~~~~~ -/usr/bin/ar qc ../../lib/libraptor_build.a CMakeFiles/raptor_build.dir/build_ibf.cpp.o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -/usr/bin/ranlib ../../lib/libraptor_build.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -[ 88%] Built target raptor_build -[ 90%] Linking CXX static library ../../lib/libraptor_upgrade.a +[ 88%] Linking CXX static library ../../lib/libraptor_upgrade.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/cmake -P CMakeFiles/raptor_upgrade.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_upgrade.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_upgrade.a CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o /usr/bin/ranlib ../../lib/libraptor_upgrade.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -[ 90%] Built target raptor_upgrade +[ 88%] Built target raptor_upgrade +[ 90%] Linking CXX static library ../../lib/libraptor_build.a +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/cmake -P CMakeFiles/raptor_build.dir/cmake_clean_target.cmake +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../lib/libraptor_build.a CMakeFiles/raptor_build.dir/build_ibf.cpp.o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o CMakeFiles/raptor_build.dir/raptor_build.cpp.o +/usr/bin/ranlib ../../lib/libraptor_build.a +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +[ 90%] Built target raptor_build [ 92%] Linking CXX static library ../../lib/libraptor_argument_parsing.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/cmake -P CMakeFiles/raptor_argument_parsing.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_argument_parsing.dir/link.txt --verbose=1 @@ -1802,7 +1838,7 @@ obj-*/bin/raptor prepare --export-help cwl > debian/raptor-prepare.cwl obj-*/bin/raptor upgrade --export-help cwl > debian/raptor-upgrade.cwl dh_auto_build --arch --builddirectory build_unit - cd build_unit && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_unit && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' /usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit -B/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/CMakeFiles /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit//CMakeFiles/progress.marks @@ -1811,122 +1847,96 @@ make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/depend make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake "--color=" make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/depend make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake "--color=" make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/prepare /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/prepare/CMakeFiles/raptor_prepare.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +make[4]: Nothing to be done for '_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build'. make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/build +make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build -make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +[ 0%] Built target xxhash_project +[ 1%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o +[ 2%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o +[ 3%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o +[ 6%] Building CXX object src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o +[ 6%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Nothing to be done for '_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/prepare && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -MF CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o.d -o CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare/compute_minimiser.cpp make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/build +make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 1%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -[ 2%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp -[ 3%] Building CXX object src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 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src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde 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CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp -[ 36%] Built target xxhash_project -[ 37%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 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_deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/depend -[ 39%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -[ 40%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong 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/build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/DependInfo.cmake "--color=" -[ 41%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_parent_kmers.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/parse_bin_path.cpp -[ 41%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 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-mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/compute_bin_size.cpp make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build +[ 16%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o +[ 16%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o +[ 22%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o +[ 24%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp +[ 24%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o +[ 22%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 43%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/insert_into_ibf.cpp +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp +[ 25%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -std=gnu++23 -pedantic -Wall -Wextra -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -MF CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o.d -o CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper_layout.cpp +[ 26%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_error_model.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:17: @@ -1941,7 +1951,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator<std::input_iterator_tag, T> { | ^~~~~~~~ @@ -1952,15 +1962,15 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +[ 27%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o +[ 29%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_parent_kmers.cpp +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/build_parsing.cpp +[ 30%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_indirect_error_model.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator<std::input_iterator_tag, T> { - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator<std::input_iterator_tag, T> { | ^~~~~~~~ @@ -1971,6 +1981,12 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:13: +/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] + 20 | : public T, public std::iterator<std::input_iterator_tag, T> { + | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, from /usr/include/c++/14/vector:62, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, @@ -1980,7 +1996,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator<std::input_iterator_tag, T> { | ^~~~~~~~ @@ -1993,7 +2009,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator<std::input_iterator_tag, T> { | ^~~~~~~~ @@ -2006,7 +2022,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator<std::input_iterator_tag, T> { | ^~~~~~~~ @@ -2029,28 +2045,12 @@ /usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ 616 | typedef SIMDE_POLY128_TYPE simde_poly128; | ^~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator<std::input_iterator_tag, T> { - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/vector:62, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -[ 44%] Linking CXX static library ../../lib/libraptor_threshold.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -/usr/bin/ranlib ../../lib/libraptor_threshold.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 44%] Built target raptor_threshold -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:16: +[ 31%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/compute_bin_size.cpp +[ 32%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/read_chopper_pack_file.hpp:17, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2061,8 +2061,12 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_user_bins.hpp:15, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:15: +[ 34%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -MF CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o.d -o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/pascal_row.cpp +[ 35%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_correction.cpp +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2073,6 +2077,10 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 36%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_threshold.cpp +[ 37%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/init_shared_meta.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] @@ -2085,8 +2093,8 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/read_chopper_pack_file.hpp:17, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:17: +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2097,8 +2105,21 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:13: +/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] + 20 | : public T, public std::iterator<std::input_iterator_tag, T> { + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/vector:62, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/hierarchical_build.hpp:18, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2109,8 +2130,8 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:16: +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2121,8 +2142,14 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/hierarchical_build.hpp:18, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:17: +[ 39%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/parse_bin_path.cpp +[ 40%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/prepare_parsing.cpp +[ 41%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/search_parsing.cpp +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_user_bins.hpp:15, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:15: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2133,6 +2160,15 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 43%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/upgrade_parsing.cpp +[ 44%] Linking CXX static library ../../lib/libraptor_threshold.a +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o +/usr/bin/ranlib ../../lib/libraptor_threshold.a +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +[ 44%] Built target raptor_threshold [ 45%] Linking CXX static library ../../lib/libraptor_prepare.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/prepare && /usr/bin/cmake -P CMakeFiles/raptor_prepare.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/prepare && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_prepare.dir/link.txt --verbose=1 @@ -2146,19 +2182,15 @@ make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 46%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o +[ 46%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -MF CMakeFiles/raptor_build.dir/build_ibf.cpp.o.d -o CMakeFiles/raptor_build.dir/build_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/build_ibf.cpp +[ 48%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -MF CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o.d -o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/max_count_per_partition.cpp -[ 48%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o +[ 49%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/raptor_build.cpp -[ 49%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -MF CMakeFiles/raptor_build.dir/build_ibf.cpp.o.d -o CMakeFiles/raptor_build.dir/build_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/build_ibf.cpp [ 50%] Linking CXX static library ../../../lib/libraptor_build_hibf.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -/usr/bin/ranlib ../../../lib/libraptor_build_hibf.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 50%] Built target raptor_build_hibf [ 51%] Linking CXX static library ../../../lib/libchopper_layout_lib.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1 @@ -2167,14 +2199,14 @@ make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 51%] Built target chopper_layout_lib make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/depend -make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/layout /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/layout/CMakeFiles/raptor_layout.dir/DependInfo.cmake "--color=" +make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/depend +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake "--color=" [ 53%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/layout && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -MF CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o.d -o CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout/raptor_layout.cpp make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' @@ -2182,6 +2214,10 @@ make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 54%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -std=gnu++23 -pedantic -Wall -Wextra -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o -MF CMakeFiles/chopper.dir/chopper.cpp.o.d -o CMakeFiles/chopper.dir/chopper.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper.cpp +/usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o +/usr/bin/ranlib ../../../lib/libraptor_build_hibf.a +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +[ 54%] Built target raptor_build_hibf [ 55%] Linking CXX static library ../../lib/libraptor_search.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1 @@ -2219,10 +2255,6 @@ [ 59%] Linking CXX static library ../../lib/libraptor_argument_parsing.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/cmake -P CMakeFiles/raptor_argument_parsing.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_argument_parsing.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_argument_parsing.a "CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o" CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -/usr/bin/ranlib ../../lib/libraptor_argument_parsing.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 59%] Built target raptor_argument_parsing [ 60%] Linking CXX static library ../../lib/libraptor_layout.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/layout && /usr/bin/cmake -P CMakeFiles/raptor_layout.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/layout && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_layout.dir/link.txt --verbose=1 @@ -2230,6 +2262,10 @@ /usr/bin/ranlib ../../lib/libraptor_layout.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 60%] Built target raptor_layout +/usr/bin/ar qc ../../lib/libraptor_argument_parsing.a "CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o" CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o +/usr/bin/ranlib ../../lib/libraptor_argument_parsing.a +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +[ 60%] Built target raptor_argument_parsing make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/CMakeFiles/raptor.dir/DependInfo.cmake "--color=" @@ -2245,186 +2281,186 @@ [ 63%] Built target raptor make -f api/CMakeFiles/issue_142.dir/build.make api/CMakeFiles/issue_142.dir/depend make -f api/CMakeFiles/memory_usage.dir/build.make api/CMakeFiles/memory_usage.dir/depend -make -f api/CMakeFiles/validate_shape.dir/build.make api/CMakeFiles/validate_shape.dir/depend -make -f cli/argument_parsing/CMakeFiles/options_test.dir/build.make cli/argument_parsing/CMakeFiles/options_test.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/api /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api/CMakeFiles/issue_142.dir/DependInfo.cmake "--color=" -make -f cli/build/CMakeFiles/build_hibf_chopper_test.dir/build.make cli/build/CMakeFiles/build_hibf_chopper_test.dir/depend -make -f cli/build/CMakeFiles/build_hibf_test.dir/build.make cli/build/CMakeFiles/build_hibf_test.dir/depend +make -f api/CMakeFiles/validate_shape.dir/build.make api/CMakeFiles/validate_shape.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/api /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api/CMakeFiles/memory_usage.dir/DependInfo.cmake "--color=" -make -f cli/build/CMakeFiles/build_ibf_compressed_test.dir/build.make cli/build/CMakeFiles/build_ibf_compressed_test.dir/depend -make -f cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build.make cli/build/CMakeFiles/build_ibf_partitioned_test.dir/depend -make -f cli/build/CMakeFiles/build_ibf_test.dir/build.make cli/build/CMakeFiles/build_ibf_test.dir/depend +make -f cli/argument_parsing/CMakeFiles/options_test.dir/build.make cli/argument_parsing/CMakeFiles/options_test.dir/depend +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/api /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api/CMakeFiles/validate_shape.dir/DependInfo.cmake "--color=" +make -f cli/build/CMakeFiles/build_hibf_chopper_test.dir/build.make cli/build/CMakeFiles/build_hibf_chopper_test.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/argument_parsing/CMakeFiles/options_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/api /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api/CMakeFiles/validate_shape.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/CMakeFiles/build_hibf_chopper_test.dir/DependInfo.cmake "--color=" +make -f cli/build/CMakeFiles/build_hibf_test.dir/build.make cli/build/CMakeFiles/build_hibf_test.dir/depend +make -f cli/build/CMakeFiles/build_ibf_compressed_test.dir/build.make cli/build/CMakeFiles/build_ibf_compressed_test.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/CMakeFiles/build_hibf_test.dir/DependInfo.cmake "--color=" +make -f cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build.make cli/build/CMakeFiles/build_ibf_partitioned_test.dir/depend +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/CMakeFiles/build_ibf_compressed_test.dir/DependInfo.cmake "--color=" -make -f cli/search/CMakeFiles/search_hibf_test.dir/build.make cli/search/CMakeFiles/search_hibf_test.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/CMakeFiles/build_hibf_chopper_test.dir/DependInfo.cmake "--color=" +make -f api/CMakeFiles/issue_142.dir/build.make api/CMakeFiles/issue_142.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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api/CMakeFiles/validate_shape.dir/build.make api/CMakeFiles/validate_shape.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/DependInfo.cmake "--color=" -make -f cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/build.make cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/depend -make -f cli/search/CMakeFiles/search_ibf_test.dir/build.make cli/search/CMakeFiles/search_ibf_test.dir/depend -make -f cli/upgrade/CMakeFiles/upgrade_test.dir/build.make cli/upgrade/CMakeFiles/upgrade_test.dir/depend +make -f cli/build/CMakeFiles/build_ibf_test.dir/build.make cli/build/CMakeFiles/build_ibf_test.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f cli/argument_parsing/CMakeFiles/options_test.dir/build.make 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cli/build/CMakeFiles/build_hibf_test.dir/build.make cli/build/CMakeFiles/build_hibf_test.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f api/CMakeFiles/issue_142.dir/build.make api/CMakeFiles/issue_142.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f api/CMakeFiles/validate_shape.dir/build.make api/CMakeFiles/validate_shape.dir/build -make -f cli/build/CMakeFiles/build_hibf_chopper_test.dir/build.make cli/build/CMakeFiles/build_hibf_chopper_test.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f cli/build/CMakeFiles/build_ibf_compressed_test.dir/build.make cli/build/CMakeFiles/build_ibf_compressed_test.dir/build make -f cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build.make cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build +make -f cli/search/CMakeFiles/search_hibf_test.dir/build.make cli/search/CMakeFiles/search_hibf_test.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +[ 64%] Building CXX object api/CMakeFiles/memory_usage.dir/memory_usage.cpp.o +[ 65%] Building CXX object api/CMakeFiles/issue_142.dir/issue_142.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT api/CMakeFiles/memory_usage.dir/memory_usage.cpp.o -MF CMakeFiles/memory_usage.dir/memory_usage.cpp.o.d -o CMakeFiles/memory_usage.dir/memory_usage.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/api/memory_usage.cpp +[ 67%] Building CXX object api/CMakeFiles/validate_shape.dir/validate_shape.cpp.o make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f cli/build/CMakeFiles/build_ibf_test.dir/build.make cli/build/CMakeFiles/build_ibf_test.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f cli/build/CMakeFiles/build_hibf_test.dir/build.make cli/build/CMakeFiles/build_hibf_test.dir/build +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/CMakeFiles/search_hibf_test.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT api/CMakeFiles/validate_shape.dir/validate_shape.cpp.o -MF CMakeFiles/validate_shape.dir/validate_shape.cpp.o.d -o CMakeFiles/validate_shape.dir/validate_shape.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/api/validate_shape.cpp +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT api/CMakeFiles/issue_142.dir/issue_142.cpp.o -MF CMakeFiles/issue_142.dir/issue_142.cpp.o.d -o CMakeFiles/issue_142.dir/issue_142.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/api/issue_142.cpp +[ 68%] Building CXX object cli/build/CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o -MF CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o.d -o CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build/build_hibf_chopper_test.cpp +make -f cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/build.make cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/depend +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +[ 69%] Building CXX object cli/argument_parsing/CMakeFiles/options_test.dir/options_test.cpp.o +make -f cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/build.make cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/depend +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/argument_parsing && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/argument_parsing/CMakeFiles/options_test.dir/options_test.cpp.o -MF CMakeFiles/options_test.dir/options_test.cpp.o.d -o CMakeFiles/options_test.dir/options_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/argument_parsing/options_test.cpp +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/DependInfo.cmake "--color=" +make -f cli/search/CMakeFiles/search_ibf_test.dir/build.make cli/search/CMakeFiles/search_ibf_test.dir/depend +[ 70%] Building CXX object cli/build/CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o +make -f cli/upgrade/CMakeFiles/upgrade_test.dir/build.make cli/upgrade/CMakeFiles/upgrade_test.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/CMakeFiles/search_ibf_test.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o -MF CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o.d -o CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build/build_hibf_test.cpp +[ 72%] Building CXX object cli/build/CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/upgrade/CMakeFiles/upgrade_test.dir/DependInfo.cmake "--color=" +[ 73%] Building CXX object cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o -MF CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o.d -o CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build/build_ibf_compressed_test.cpp +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o -MF CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o.d -o CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build/build_ibf_partitioned_test.cpp make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/build.make cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/build +[ 74%] Building CXX object cli/build/CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f api/CMakeFiles/memory_usage.dir/build.make api/CMakeFiles/memory_usage.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o -MF CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o.d -o CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build/build_ibf_test.cpp make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f cli/search/CMakeFiles/search_hibf_test.dir/build.make cli/search/CMakeFiles/search_hibf_test.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +make -f cli/search/CMakeFiles/search_hibf_test.dir/build.make cli/search/CMakeFiles/search_hibf_test.dir/build make -f cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/build.make cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f cli/upgrade/CMakeFiles/upgrade_test.dir/build.make cli/upgrade/CMakeFiles/upgrade_test.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 64%] Building CXX object cli/argument_parsing/CMakeFiles/options_test.dir/options_test.cpp.o make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' make -f cli/search/CMakeFiles/search_ibf_test.dir/build.make cli/search/CMakeFiles/search_ibf_test.dir/build -[ 65%] Building CXX object cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/argument_parsing && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/argument_parsing/CMakeFiles/options_test.dir/options_test.cpp.o -MF CMakeFiles/options_test.dir/options_test.cpp.o.d -o CMakeFiles/options_test.dir/options_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/argument_parsing/options_test.cpp +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +make -f cli/upgrade/CMakeFiles/upgrade_test.dir/build.make cli/upgrade/CMakeFiles/upgrade_test.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o -MF CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o.d -o CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build/build_ibf_partitioned_test.cpp -[ 67%] Building CXX object cli/build/CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o -[ 68%] Building CXX object cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o -[ 69%] Building CXX object api/CMakeFiles/memory_usage.dir/memory_usage.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/build/CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o -MF CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o.d -o CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build/build_ibf_test.cpp -[ 70%] Building CXX object api/CMakeFiles/validate_shape.dir/validate_shape.cpp.o +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +[ 75%] Building CXX object cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o +[ 77%] Building CXX object cli/search/CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o -MF CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o.d -o CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search/search_hibf_preprocessing_test.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem 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cli/search/CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/search/CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o -MF CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o.d -o CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search/search_hibf_test.cpp -[ 79%] Building CXX object cli/search/CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o +[ 78%] Building CXX object cli/search/CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/search/CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o -MF CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o.d -o CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search/search_ibf_test.cpp +[ 79%] Building CXX object cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o [ 81%] Building CXX object cli/upgrade/CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/upgrade && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/upgrade/CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o -MF CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o.d -o CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/upgrade/upgrade_test.cpp +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o -MF CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o.d -o CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search/search_ibf_preprocessing_test.cpp [ 82%] Linking CXX executable memory_usage cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/memory_usage.dir/link.txt --verbose=1 [ 83%] Linking CXX executable issue_142 cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/issue_142.dir/link.txt --verbose=1 +[ 84%] Linking CXX executable ../../../bin/chopper +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/issue_142.dir/link.d CMakeFiles/issue_142.dir/issue_142.cpp.o -o issue_142 ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_prepare.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a ../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 83%] Built target issue_142 +[ 84%] Built target issue_142 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/memory_usage.dir/link.d CMakeFiles/memory_usage.dir/memory_usage.cpp.o -o memory_usage ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_prepare.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a ../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 83%] Built target memory_usage -[ 84%] Linking CXX executable build_hibf_chopper_test -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/build_hibf_chopper_test.dir/link.txt --verbose=1 +[ 84%] Built target memory_usage +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/chopper.dir/link.d CMakeFiles/chopper.dir/chopper.cpp.o -o ../../../bin/chopper ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +[ 84%] Built target chopper [ 86%] Linking CXX executable search_hibf_test cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/search_hibf_test.dir/link.txt --verbose=1 -[ 87%] Linking CXX executable search_ibf_test +[ 87%] Linking CXX executable build_hibf_chopper_test +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/build_hibf_chopper_test.dir/link.txt --verbose=1 +[ 88%] Linking CXX executable search_ibf_test cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/search_ibf_test.dir/link.txt --verbose=1 -[ 88%] Linking CXX executable options_test +[ 89%] Linking CXX executable options_test cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/options_test.dir/link.txt --verbose=1 -[ 89%] Linking CXX executable build_ibf_partitioned_test +[ 91%] Linking CXX executable build_hibf_test +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/build_hibf_test.dir/link.txt --verbose=1 +[ 92%] Linking CXX executable build_ibf_partitioned_test cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/build_ibf_partitioned_test.dir/link.txt --verbose=1 -[ 91%] Linking CXX executable ../../../bin/chopper -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/chopper.dir/link.d CMakeFiles/chopper.dir/chopper.cpp.o -o ../../../bin/chopper ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 91%] Built target chopper -[ 92%] Linking CXX executable build_ibf_test +[ 93%] Linking CXX executable search_hibf_preprocessing_test +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/search_hibf_preprocessing_test.dir/link.txt --verbose=1 +[ 94%] Linking CXX executable build_ibf_test cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/build_ibf_test.dir/link.txt --verbose=1 -[ 93%] Linking CXX executable upgrade_test +[ 96%] Linking CXX executable upgrade_test cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/upgrade_test.dir/link.txt --verbose=1 -[ 94%] Linking CXX executable build_ibf_compressed_test +[ 97%] Linking CXX executable build_ibf_compressed_test cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/build_ibf_compressed_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/build_hibf_chopper_test.dir/link.d CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o -o build_hibf_chopper_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 94%] Built target build_hibf_chopper_test -[ 96%] Linking CXX executable search_ibf_preprocessing_test -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/search_ibf_preprocessing_test.dir/link.txt --verbose=1 +[ 97%] Built target build_hibf_chopper_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/options_test.dir/link.d CMakeFiles/options_test.dir/options_test.cpp.o -o options_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 96%] Built target options_test -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/search_ibf_test.dir/link.d CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o -o search_ibf_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 96%] Built target search_ibf_test -[ 97%] Linking CXX executable build_hibf_test -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/build_hibf_test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/build_ibf_partitioned_test.dir/link.d CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o -o build_ibf_partitioned_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 97%] Built target build_ibf_partitioned_test +[ 97%] Built target options_test +[ 98%] Linking CXX executable search_ibf_preprocessing_test +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/search_ibf_preprocessing_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/search_hibf_test.dir/link.d CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o -o search_hibf_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 97%] Built target search_hibf_test -[ 98%] Linking CXX executable search_hibf_preprocessing_test -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/search_hibf_preprocessing_test.dir/link.txt --verbose=1 +[ 98%] Built target search_hibf_test +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/search_ibf_test.dir/link.d CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o -o search_ibf_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +[ 98%] Built target search_ibf_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/upgrade_test.dir/link.d CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o -o upgrade_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 98%] Built target upgrade_test -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/build_ibf_compressed_test.dir/link.d CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o -o build_ibf_compressed_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/build_ibf_partitioned_test.dir/link.d CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o -o build_ibf_partitioned_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 98%] Built target build_ibf_compressed_test +[ 98%] Built target build_ibf_partitioned_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/build_ibf_test.dir/link.d CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o -o build_ibf_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 98%] Built target build_ibf_test -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/search_ibf_preprocessing_test.dir/link.d CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o -o search_ibf_preprocessing_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 98%] Built target search_ibf_preprocessing_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/build_hibf_test.dir/link.d CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o -o build_hibf_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 98%] Built target build_hibf_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/search_hibf_preprocessing_test.dir/link.d CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o -o search_hibf_preprocessing_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' [ 98%] Built target search_hibf_preprocessing_test +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/build_ibf_compressed_test.dir/link.d CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o -o build_ibf_compressed_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +[ 98%] Built target build_ibf_compressed_test +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/search_ibf_preprocessing_test.dir/link.d CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o -o search_ibf_preprocessing_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' +[ 98%] Built target search_ibf_preprocessing_test [100%] Linking CXX executable validate_shape cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/validate_shape.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/validate_shape.dir/link.d CMakeFiles/validate_shape.dir/validate_shape.cpp.o -o validate_shape ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_prepare.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a ../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest @@ -2436,7 +2472,7 @@ #dh_auto_build --arch --builddirectory build_performance #dh_auto_build --arch --builddirectory build_header dh_auto_build --arch --builddirectory build_snippet - cd build_snippet && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_snippet && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' /usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet -B/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/CMakeFiles /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet//CMakeFiles/progress.marks @@ -2445,137 +2481,105 @@ make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/depend make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend -make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/depend -make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake "--color=" -make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend +make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/prepare /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/prepare/CMakeFiles/raptor_prepare.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/prepare /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/prepare/CMakeFiles/raptor_prepare.dir/DependInfo.cmake "--color=" -make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend +make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake "--color=" +make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake "--color=" +make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build -make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make[4]: Nothing to be done for '_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/build -make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build -[ 1%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -[ 5%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 5%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects 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-I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_error_model.cpp +[ 15%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o +[ 16%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o +[ 18%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o +[ 23%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o +[ 23%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o +[ 23%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. 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src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/compute_kmers.cpp +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/compute_bin_size.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 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_deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/depend -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp -[ 30%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +[ 25%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o +make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_indirect_error_model.cpp +[ 27%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -MF 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_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build +[ 28%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat 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/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_ibf.cpp -[ 28%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -[ 28%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o -[ 28%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 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-std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/init_shared_meta.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp -[ 42%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -[ 44%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem 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/build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_partitioned_ibf.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 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/usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/parse_bin_path.cpp +[ 32%] Built target xxhash_project +make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/depend +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet 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src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp -[ 57%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o +[ 33%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_hibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_hibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_hibf.cpp +[ 38%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_ibf.cpp +[ 40%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/prepare_parsing.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:17: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator<std::input_iterator_tag, T> { - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/algorithm:60, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:13: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator<std::input_iterator_tag, T> { | ^~~~~~~~ @@ -2588,7 +2592,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator<std::input_iterator_tag, T> { | ^~~~~~~~ @@ -2613,20 +2617,7 @@ | ^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator<std::input_iterator_tag, T> { - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/vector:62, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator<std::input_iterator_tag, T> { | ^~~~~~~~ @@ -2639,7 +2630,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator<std::input_iterator_tag, T> { | ^~~~~~~~ @@ -2650,22 +2641,44 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +[ 42%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/insert_into_ibf.cpp +[ 44%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_partitioned_ibf.cpp +[ 45%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp +[ 47%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:16: +/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] + 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags +/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define +/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes +/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ +/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] + 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 49%] Linking CXX static library ../../lib/libraptor_threshold.a +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1 In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator<std::input_iterator_tag, T> { | ^~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/vector:62, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: + from /usr/include/c++/14/algorithm:60, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:13: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator<std::input_iterator_tag, T> { | ^~~~~~~~ @@ -2676,23 +2689,14 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/read_chopper_pack_file.hpp:17, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:17: -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 59%] Linking CXX static library ../../lib/libraptor_threshold.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o +/usr/bin/ranlib ../../lib/libraptor_threshold.a +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +[ 49%] Built target raptor_threshold +[ 50%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2704,7 +2708,7 @@ 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:16: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2715,8 +2719,8 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_user_bins.hpp:15, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:15: +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2727,11 +2731,29 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -/usr/bin/ranlib ../../lib/libraptor_threshold.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:16: +[ 52%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp +[ 54%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_parent_kmers.cpp +[ 55%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/search_parsing.cpp +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:13: +/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] + 20 | : public T, public std::iterator<std::input_iterator_tag, T> { + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/vector:62, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +[ 57%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/hierarchical_build.hpp:18, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2742,9 +2764,42 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 59%] Built target raptor_threshold -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:16: +[ 59%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/upgrade_parsing.cpp +[ 61%] Linking CXX static library ../../lib/libraptor_prepare.a +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/prepare && /usr/bin/cmake -P CMakeFiles/raptor_prepare.dir/cmake_clean_target.cmake +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/prepare && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_prepare.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../lib/libraptor_prepare.a CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o +/usr/bin/ranlib ../../lib/libraptor_prepare.a +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +[ 61%] Built target raptor_prepare +make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +[ 62%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -MF CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o.d -o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/max_count_per_partition.cpp +[ 64%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -MF CMakeFiles/raptor_build.dir/build_ibf.cpp.o.d -o CMakeFiles/raptor_build.dir/build_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/build_ibf.cpp +[ 66%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/raptor_build.cpp +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:13: +/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator’ is deprecated [-Wdeprecated-declarations] + 20 | : public T, public std::iterator<std::input_iterator_tag, T> { + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/vector:62, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/read_chopper_pack_file.hpp:17, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2755,8 +2810,8 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/hierarchical_build.hpp:18, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:17: +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_user_bins.hpp:15, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:15: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -2767,62 +2822,36 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic<size_t> user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 61%] Linking CXX static library ../../lib/libraptor_prepare.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/prepare && /usr/bin/cmake -P CMakeFiles/raptor_prepare.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/prepare && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_prepare.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_prepare.a CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -/usr/bin/ranlib ../../lib/libraptor_prepare.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 61%] Built target raptor_prepare -make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 62%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -MF CMakeFiles/raptor_build.dir/build_ibf.cpp.o.d -o CMakeFiles/raptor_build.dir/build_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/build_ibf.cpp -[ 64%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/raptor_build.cpp -[ 66%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -MF CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o.d -o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/max_count_per_partition.cpp -[ 67%] Linking CXX static library ../../../lib/libraptor_build_hibf.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -/usr/bin/ranlib ../../../lib/libraptor_build_hibf.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 67%] Built target raptor_build_hibf -[ 69%] Linking CXX static library ../../../lib/libchopper_layout_lib.a +[ 67%] Linking CXX static library ../../../lib/libchopper_layout_lib.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libchopper_layout_lib.a CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o /usr/bin/ranlib ../../../lib/libchopper_layout_lib.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 71%] Linking CXX static library ../../lib/libraptor_search.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake -[ 71%] Built target chopper_layout_lib +[ 67%] Built target chopper_layout_lib make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/depend -make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/depend -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/layout /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/layout/CMakeFiles/raptor_layout.dir/DependInfo.cmake "--color=" +make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 72%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +[ 69%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -std=gnu++23 -pedantic -Wall -Wextra -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o -MF CMakeFiles/chopper.dir/chopper.cpp.o.d -o CMakeFiles/chopper.dir/chopper.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper.cpp -[ 74%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o +[ 71%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/layout && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -MF CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o.d -o CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout/raptor_layout.cpp -/usr/bin/ar qc ../../lib/libraptor_search.a CMakeFiles/raptor_search.dir/raptor_search.cpp.o CMakeFiles/raptor_search.dir/search_hibf.cpp.o CMakeFiles/raptor_search.dir/search_ibf.cpp.o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -/usr/bin/ranlib ../../lib/libraptor_search.a +[ 72%] Linking CXX static library ../../../lib/libraptor_build_hibf.a +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o +/usr/bin/ranlib ../../../lib/libraptor_build_hibf.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 74%] Built target raptor_search +[ 72%] Built target raptor_build_hibf In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, @@ -2836,6 +2865,13 @@ /usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ 616 | typedef SIMDE_POLY128_TYPE simde_poly128; | ^~~~~~~~~~~~~~~~~~ +[ 74%] Linking CXX static library ../../lib/libraptor_search.a +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../lib/libraptor_search.a CMakeFiles/raptor_search.dir/raptor_search.cpp.o CMakeFiles/raptor_search.dir/search_hibf.cpp.o CMakeFiles/raptor_search.dir/search_ibf.cpp.o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o +/usr/bin/ranlib ../../lib/libraptor_search.a +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +[ 74%] Built target raptor_search [ 76%] Linking CXX static library ../../lib/libraptor_build.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/cmake -P CMakeFiles/raptor_build.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build.dir/link.txt --verbose=1 @@ -2853,10 +2889,6 @@ [ 79%] Linking CXX static library ../../lib/libraptor_argument_parsing.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/cmake -P CMakeFiles/raptor_argument_parsing.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_argument_parsing.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_argument_parsing.a "CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o" CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -/usr/bin/ranlib ../../lib/libraptor_argument_parsing.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 79%] Built target raptor_argument_parsing [ 81%] Linking CXX static library ../../lib/libraptor_layout.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/layout && /usr/bin/cmake -P CMakeFiles/raptor_layout.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/layout && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_layout.dir/link.txt --verbose=1 @@ -2864,21 +2896,25 @@ /usr/bin/ranlib ../../lib/libraptor_layout.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 81%] Built target raptor_layout +/usr/bin/ar qc ../../lib/libraptor_argument_parsing.a "CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o" CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o +/usr/bin/ranlib ../../lib/libraptor_argument_parsing.a +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +[ 81%] Built target raptor_argument_parsing make -f CMakeFiles/snippet_main.dir/build.make CMakeFiles/snippet_main.dir/depend -make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/CMakeFiles/snippet_main.dir/DependInfo.cmake "--color=" +make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/CMakeFiles/raptor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f CMakeFiles/snippet_main.dir/build.make CMakeFiles/snippet_main.dir/build -make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/build +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 83%] Building CXX object CMakeFiles/snippet_main.dir/snippet_main.cpp.o -[ 84%] Building CXX object src/CMakeFiles/raptor.dir/raptor.cpp.o /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT CMakeFiles/snippet_main.dir/snippet_main.cpp.o -MF CMakeFiles/snippet_main.dir/snippet_main.cpp.o.d -o CMakeFiles/snippet_main.dir/snippet_main.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.cpp +[ 84%] Building CXX object src/CMakeFiles/raptor.dir/raptor.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/CMakeFiles/raptor.dir/raptor.cpp.o -MF CMakeFiles/raptor.dir/raptor.cpp.o.d -o CMakeFiles/raptor.dir/raptor.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/raptor.cpp [ 86%] Linking CXX static library libsnippet_main.a /usr/bin/cmake -P CMakeFiles/snippet_main.dir/cmake_clean_target.cmake @@ -2891,51 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/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/CMakeFiles/snippet_main_snippet.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make -f CMakeFiles/bin_indices_of_ibf_snippet.dir/build.make CMakeFiles/bin_indices_of_ibf_snippet.dir/build -make -f CMakeFiles/filename_of_user_bin_snippet.dir/build.make CMakeFiles/filename_of_user_bin_snippet.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f CMakeFiles/snippet_main_snippet.dir/build.make CMakeFiles/snippet_main_snippet.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +make -f CMakeFiles/snippet_main_snippet.dir/build.make CMakeFiles/snippet_main_snippet.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +make -f CMakeFiles/filename_of_user_bin_snippet.dir/build.make CMakeFiles/filename_of_user_bin_snippet.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 91%] Building CXX object CMakeFiles/snippet_main_snippet.dir/snippet_main.cpp.o -[ 91%] Building CXX object CMakeFiles/bin_indices_of_ibf_snippet.dir/hibf/bin_indices_of_ibf.cpp.o -[ 91%] Building CXX object CMakeFiles/filename_of_user_bin_snippet.dir/hibf/filename_of_user_bin.cpp.o -/usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT CMakeFiles/filename_of_user_bin_snippet.dir/hibf/filename_of_user_bin.cpp.o -MF CMakeFiles/filename_of_user_bin_snippet.dir/hibf/filename_of_user_bin.cpp.o.d -o CMakeFiles/filename_of_user_bin_snippet.dir/hibf/filename_of_user_bin.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/filename_of_user_bin.cpp +[ 88%] Building CXX object CMakeFiles/bin_indices_of_ibf_snippet.dir/hibf/bin_indices_of_ibf.cpp.o /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /usr/include/seqan3/vendor -isystem 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT CMakeFiles/snippet_main_snippet.dir/snippet_main.cpp.o -MF CMakeFiles/snippet_main_snippet.dir/snippet_main.cpp.o.d -o CMakeFiles/snippet_main_snippet.dir/snippet_main.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.cpp +[ 91%] Building CXX object CMakeFiles/filename_of_user_bin_snippet.dir/hibf/filename_of_user_bin.cpp.o +/usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 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-I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT CMakeFiles/filename_of_user_bin_snippet.dir/hibf/filename_of_user_bin.cpp.o -MF CMakeFiles/filename_of_user_bin_snippet.dir/hibf/filename_of_user_bin.cpp.o.d -o CMakeFiles/filename_of_user_bin_snippet.dir/hibf/filename_of_user_bin.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/filename_of_user_bin.cpp [ 93%] Linking CXX executable snippet_main_snippet /usr/bin/cmake -E cmake_link_script CMakeFiles/snippet_main_snippet.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong 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/usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' [ 93%] Built target snippet_main_snippet -[ 94%] Linking CXX executable hibf/bin_indices_of_ibf_snippet -/usr/bin/cmake -E cmake_link_script CMakeFiles/bin_indices_of_ibf_snippet.dir/link.txt --verbose=1 -[ 96%] Linking CXX executable hibf/filename_of_user_bin_snippet +[ 94%] Linking CXX executable hibf/filename_of_user_bin_snippet /usr/bin/cmake -E cmake_link_script CMakeFiles/filename_of_user_bin_snippet.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/bin_indices_of_ibf_snippet.dir/link.d CMakeFiles/bin_indices_of_ibf_snippet.dir/hibf/bin_indices_of_ibf.cpp.o -o hibf/bin_indices_of_ibf_snippet libsnippet_main.a -lgtest_main -lgtest lib/libraptor_argument_parsing.a lib/libraptor_build.a lib/libraptor_build_hibf.a lib/libraptor_prepare.a lib/libraptor_search.a lib/libraptor_threshold.a lib/libraptor_upgrade.a lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 96%] Built target bin_indices_of_ibf_snippet +[ 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-Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/bin_indices_of_ibf_snippet.dir/link.d CMakeFiles/bin_indices_of_ibf_snippet.dir/hibf/bin_indices_of_ibf.cpp.o -o hibf/bin_indices_of_ibf_snippet libsnippet_main.a -lgtest_main -lgtest lib/libraptor_argument_parsing.a lib/libraptor_build.a lib/libraptor_build_hibf.a lib/libraptor_prepare.a lib/libraptor_search.a lib/libraptor_threshold.a lib/libraptor_upgrade.a lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' +[ 96%] Built target bin_indices_of_ibf_snippet [ 98%] Linking CXX executable ../bin/raptor cd 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directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' @@ -2943,7 +2979,7 @@ debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_build --indep --builddirectory doc_build - cd doc_build && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd doc_build && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' /usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds/test/documentation -B/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start 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Searching for msc files... @@ -3016,32 +3052,32 @@ Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/upgrade Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/layout -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/upgrade Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/prepare +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/layout Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/figures Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/setup Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/setup/quickstart_cmake Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/02_layout -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/04_search Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/01_introduction +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/04_search Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/03_index +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/02_layout +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/figures Reading and parsing tag files Reading tag file '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/cppreference-doxygen-web.tag.xml', location 'https://en.cppreference.com/w/'... Parsing files @@ -3477,15 +3513,6 @@ Generating code for file version.hpp... Parsing code for file LICENSE.md... Parsing code for file build_parsing.cpp... -Parsing code for file CMakeLists.txt... -Parsing code for file CMakeLists.txt... -Parsing code for file CMakeLists.txt... -Parsing code for file CMakeLists.txt... -Parsing code for file CMakeLists.txt... -Parsing code for file CMakeLists.txt... -Parsing code for file CMakeLists.txt... -Parsing code for file CMakeLists.txt... -Parsing code for file CMakeLists.txt... Parsing code for file compute_bin_size.cpp... Parsing code for file init_shared_meta.cpp... Parsing code for file parse_bin_path.cpp... @@ -3511,6 +3538,15 @@ Parsing code for file raptor_layout.cpp... Parsing code for file compute_minimiser.cpp... Parsing code for file raptor.cpp... +Parsing code for file CMakeLists.txt... +Parsing code for file CMakeLists.txt... +Parsing code for file CMakeLists.txt... +Parsing code for file CMakeLists.txt... +Parsing code for file CMakeLists.txt... +Parsing code for file CMakeLists.txt... +Parsing code for file CMakeLists.txt... +Parsing code for file CMakeLists.txt... +Parsing code for file CMakeLists.txt... Parsing code for file raptor_search.cpp... Parsing code for file search_hibf.cpp... Parsing code for file search_ibf.cpp... @@ -3769,10 +3805,10 @@ debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_test --arch --builddirectory build_unit - cd build_unit && make -j42 test ARGS\+=--verbose ARGS\+=-j42 + cd build_unit && make -j20 test ARGS\+=--verbose ARGS\+=-j20 make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j42 +/usr/bin/ctest --force-new-ctest-process --verbose -j20 UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/DartConfiguration.tcl Test project /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit @@ -3873,7 +3909,7 @@ 1: [----------] 1 test from issue 1: [ RUN ] issue.142 1: [ OK ] issue.142 (6 ms) -1: [----------] 1 test from issue (7 ms total) +1: [----------] 1 test from issue (6 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 1 test from 1 test suite ran. (7 ms total) @@ -3919,15 +3955,10 @@ 4: [----------] Global test environment set-up. 4: [----------] 3 tests from argparse_main 4: [ RUN ] argparse_main.no_options -4: [ OK ] argparse_main.no_options (7 ms) +4: [ OK ] argparse_main.no_options (10 ms) 4: [ RUN ] argparse_main.no_subparser -4: [ OK ] argparse_main.no_subparser (6 ms) +4: [ OK ] argparse_main.no_subparser (12 ms) 4: [ RUN ] argparse_main.unknown_option -4: [ OK ] argparse_main.unknown_option (6 ms) -4: [----------] 3 tests from argparse_main (20 ms total) -4: -4: [----------] 20 tests from argparse_build -4: [ RUN ] argparse_build.no_options 5: Running main() from ./googletest/src/gtest_main.cc 5: [==========] Running 1 test from 1 test suite. 5: [----------] Global test environment set-up. @@ -3948,8 +3979,6 @@ 7: 7: [----------] 24 tests from build_ibf_compressed_suite/build_ibf_compressed 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel0_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel0_error (24 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel1_error 8: Running main() from ./googletest/src/gtest_main.cc 8: [==========] Running 25 tests from 2 test suites. 8: [----------] Global test environment set-up. @@ -3980,745 +4009,752 @@ 13: [----------] Global test environment set-up. 13: [----------] 2 tests from search_ibf 13: [ RUN ] search_ibf.cache_thresholds - 1/14 Test #1: api/issue_142 ............................... Passed 0.06 sec + 1/14 Test #1: api/issue_142 ............................... Passed 0.05 sec 2/14 Test #2: api/memory_usage ............................ Passed 0.05 sec 3/14 Test #3: api/validate_shape .......................... Passed 0.05 sec -4: [ OK ] argparse_build.no_options (14 ms) -4: [ RUN ] argparse_build.input_missing -10: [ OK ] search_hibf.three_levels (23 ms) -10: [----------] 1 test from search_hibf (23 ms total) -10: -10: [----------] 36 tests from search_hibf_suite/search_hibf -10: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_0_error 14: Running main() from ./googletest/src/gtest_main.cc 14: [==========] Running 6 tests from 1 test suite. 14: [----------] Global test environment set-up. 14: [----------] 6 tests from upgrade 14: [ RUN ] upgrade.via_fpr -14: [ OK ] upgrade.via_fpr (11 ms) +4: [ OK ] argparse_main.unknown_option (27 ms) +4: [----------] 3 tests from argparse_main (50 ms total) +4: +4: [----------] 20 tests from argparse_build +4: [ RUN ] argparse_build.no_options +14: [ OK ] upgrade.via_fpr (17 ms) 14: [ RUN ] upgrade.via_bin_path -9: [ OK ] build_ibf.verbose (31 ms) -9: [----------] 1 test from build_ibf (31 ms total) -9: -9: [----------] 24 tests from build_ibf_suite/build_ibf -9: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_parallel -12: [ OK ] search_ibf_preprocessing.pipeline_compressed_index (32 ms) -12: [----------] 1 test from search_ibf_preprocessing (32 ms total) +4: [ OK ] argparse_build.no_options (12 ms) +4: [ RUN ] argparse_build.input_missing +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel0_error (56 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel1_error +10: [ OK ] search_hibf.three_levels (47 ms) +10: [----------] 1 test from search_hibf (47 ms total) +10: +10: [----------] 36 tests from search_hibf_suite/search_hibf +10: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_0_error +4: [ OK ] argparse_build.input_missing (23 ms) +4: [ RUN ] argparse_build.input_invalid +10: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_0_error (19 ms) +10: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_1_error +12: [ OK ] search_ibf_preprocessing.pipeline_compressed_index (58 ms) +12: [----------] 1 test from search_ibf_preprocessing (58 ms total) 12: 12: [----------] 48 tests from search_ibf_preprocessing_suite/search_ibf_preprocessing 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel0_error -4: [ OK ] argparse_build.input_missing (21 ms) -4: [ RUN ] argparse_build.input_invalid -6: [ OK ] build_hibf.three_levels (55 ms) -6: [ RUN ] build_hibf.verbose -10: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_0_error (20 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_1_error -4: [ OK ] argparse_build.input_invalid (8 ms) +4: [ OK ] argparse_build.input_invalid (21 ms) 4: [ RUN ] argparse_build.output_missing -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel1_error (39 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial0_error -9: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_parallel (27 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_serial -4: [ OK ] argparse_build.output_missing (7 ms) -4: [ RUN ] argparse_build.kmer_window -14: [ OK ] upgrade.via_bin_path (32 ms) +14: [ OK ] upgrade.via_bin_path (59 ms) 14: [ RUN ] upgrade.via_bin_file -10: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_1_error (13 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_0_error -13: [ OK ] search_ibf.cache_thresholds (50 ms) +9: [ OK ] build_ibf.verbose (100 ms) +9: [----------] 1 test from build_ibf (100 ms total) +9: +9: [----------] 24 tests from build_ibf_suite/build_ibf +9: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_parallel +4: [ OK ] argparse_build.output_missing (16 ms) +4: [ RUN ] argparse_build.kmer_window +13: [ OK ] search_ibf.cache_thresholds (91 ms) 13: [ RUN ] search_ibf.verbose +10: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_1_error (37 ms) +10: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_0_error +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel1_error (72 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial0_error 4: [ OK ] argparse_build.kmer_window (14 ms) 4: [ RUN ] argparse_build.kmer_shape -9: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_serial (15 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_parallel -4: [ OK ] argparse_build.kmer_shape (5 ms) +6: [ OK ] build_hibf.three_levels (141 ms) +6: [ RUN ] build_hibf.verbose +9: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_parallel (37 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_serial +4: [ OK ] argparse_build.kmer_shape (24 ms) 4: [ RUN ] argparse_build.zero_threads -5: [ OK ] build_hibf_layout.pipeline (90 ms) -5: [----------] 1 test from build_hibf_layout (90 ms total) -5: -5: [----------] Global test environment tear-down -5: [==========] 1 test from 1 test suite ran. (90 ms total) -5: [ PASSED ] 1 test. - 4/14 Test #5: cli/build/build_hibf_chopper_test ........... Passed 0.10 sec -13: [ OK ] search_ibf.verbose (16 ms) -13: [----------] 2 tests from search_ibf (67 ms total) +13: [ OK ] search_ibf.verbose (41 ms) +13: [----------] 2 tests from search_ibf (132 ms total) 13: 13: [----------] 36 tests from search_ibf_suite/search_ibf 13: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_0_error -4: [ OK ] argparse_build.zero_threads (12 ms) -4: [ RUN ] argparse_build.no_bins_in_file -14: [ OK ] upgrade.via_bin_file (31 ms) +14: [ OK ] upgrade.via_bin_file (51 ms) 14: [ RUN ] upgrade.compressed -10: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_0_error (32 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_1_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial0_error (34 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel0_error (55 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel0_error (82 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel1_error -9: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_parallel (24 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_serial -4: [ OK ] argparse_build.no_bins_in_file (9 ms) -4: [ RUN ] argparse_build.corrupted_input -14: [ OK ] upgrade.compressed (9 ms) -6: [ OK ] build_hibf.verbose (54 ms) -6: [----------] 2 tests from build_hibf (110 ms total) -6: -6: [----------] 24 tests from build_hibf_suite/build_hibf -6: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_parallel +5: [ OK ] build_hibf_layout.pipeline (170 ms) +5: [----------] 1 test from build_hibf_layout (170 ms total) +5: +5: [----------] Global test environment tear-down +5: [==========] 1 test from 1 test suite ran. (170 ms total) +5: [ PASSED ] 1 test. + 4/14 Test #5: cli/build/build_hibf_chopper_test ........... Passed 0.18 sec +9: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_serial (22 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_parallel +4: [ OK ] argparse_build.zero_threads (14 ms) +4: [ RUN ] argparse_build.no_bins_in_file +10: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_0_error (55 ms) +10: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_1_error +14: [ OK ] upgrade.compressed (15 ms) 14: [ RUN ] upgrade.partitioned_ibf_via_fpr -13: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_0_error (21 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_1_error -8: [ OK ] build_ibf_partitioned.pipeline_misc (109 ms) -8: [----------] 1 test from build_ibf_partitioned (109 ms total) +11: [ OK ] search_hibf_preprocessing.pipeline_with_continuation (164 ms) +11: [----------] 1 test from search_hibf_preprocessing (164 ms total) +11: +11: [----------] 48 tests from search_hibf_preprocessing_suite/search_hibf_preprocessing +11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel0_error +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial0_error (51 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial1_error +8: [ OK ] build_ibf_partitioned.pipeline_misc (185 ms) +8: [----------] 1 test from build_ibf_partitioned (185 ms total) 8: 8: [----------] 24 tests from build_ibf_partitioned_suite/build_ibf_partitioned 8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partscompressed -4: [ OK ] argparse_build.corrupted_input (10 ms) +13: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_0_error (30 ms) +13: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_1_error +4: [ OK ] argparse_build.no_bins_in_file (25 ms) +4: [ RUN ] argparse_build.corrupted_input +9: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_parallel (28 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_serial +4: [ OK ] argparse_build.corrupted_input (16 ms) 4: [ RUN ] argparse_build.empty_file_in_bin -6: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_parallel (15 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_serial -13: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_1_error (14 ms) +13: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_1_error (29 ms) 13: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_0_error -9: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_serial (18 ms) +9: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_serial (24 ms) 9: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_parallel -4: [ OK ] argparse_build.empty_file_in_bin (8 ms) -4: [ RUN ] argparse_build.mixed_input -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial1_error (28 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel0_error -11: [ OK ] search_hibf_preprocessing.pipeline_with_continuation (115 ms) -11: [----------] 1 test from search_hibf_preprocessing (115 ms total) -11: -11: [----------] 48 tests from search_hibf_preprocessing_suite/search_hibf_preprocessing -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel0_error -14: [ OK ] upgrade.partitioned_ibf_via_fpr (25 ms) +14: [ OK ] upgrade.partitioned_ibf_via_fpr (49 ms) 14: [ RUN ] upgrade.partitioned_ibf_via_bin_path -6: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_serial (12 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_parallel -10: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_1_error (36 ms) +10: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_1_error (54 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_0_error -4: [ OK ] argparse_build.mixed_input (11 ms) -4: [ RUN ] argparse_build.wrong_parts -6: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_parallel (15 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_serial -10: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_0_error (15 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel1_error (47 ms) +4: [ OK ] argparse_build.empty_file_in_bin (20 ms) +4: [ RUN ] argparse_build.mixed_input +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial1_error (52 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel0_error +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel1_error (85 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial0_error +10: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_0_error (24 ms) +10: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_1_error +4: [ OK ] argparse_build.mixed_input (21 ms) +4: [ RUN ] argparse_build.wrong_parts +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel0_error (72 ms) +11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel1_error +13: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_0_error (43 ms) +13: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_1_error 4: [ OK ] argparse_build.wrong_parts (14 ms) 4: [ RUN ] argparse_build.partitioned_parts -9: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_parallel (31 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_serial -4: [ OK ] argparse_build.partitioned_parts (10 ms) +4: [ OK ] argparse_build.partitioned_parts (9 ms) 4: [ RUN ] argparse_build.minimiser_and_shape -13: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_0_error (39 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_1_error -6: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_serial (12 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_parallel -10: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_1_error (15 ms) +10: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_1_error (32 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_0_error -14: [ OK ] upgrade.partitioned_ibf_via_bin_path (35 ms) -14: [----------] 6 tests from upgrade (147 ms total) +4: [ OK ] argparse_build.minimiser_and_shape (14 ms) +4: [ RUN ] argparse_build.minimiser_and_kmer +4: [ OK ] argparse_build.minimiser_and_kmer (13 ms) +4: [ RUN ] argparse_build.minimiser_and_window +14: [ OK ] upgrade.partitioned_ibf_via_bin_path (84 ms) +14: [----------] 6 tests from upgrade (279 ms total) 14: 14: [----------] Global test environment tear-down -14: [==========] 6 tests from 1 test suite ran. (147 ms total) +14: [==========] 6 tests from 1 test suite ran. (279 ms total) 14: [ PASSED ] 6 tests. - 5/14 Test #14: cli/upgrade/upgrade_test .................... Passed 0.15 sec -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel0_error (44 ms) +6: [ OK ] build_hibf.verbose (170 ms) +6: [----------] 2 tests from build_hibf (311 ms total) +6: +6: [----------] 24 tests from build_hibf_suite/build_hibf +6: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_parallel + 5/14 Test #14: cli/upgrade/upgrade_test .................... Passed 0.29 sec +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel0_error (78 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel0_error (44 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel1_error -4: [ OK ] argparse_build.minimiser_and_shape (11 ms) -4: [ RUN ] argparse_build.minimiser_and_kmer -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partscompressed (70 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partsuncompressed -6: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_parallel (20 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_serial -9: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_serial (39 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_parallel -4: [ OK ] argparse_build.minimiser_and_kmer (22 ms) -4: [ RUN ] argparse_build.minimiser_and_window -13: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_1_error (36 ms) +4: [ OK ] argparse_build.minimiser_and_window (12 ms) +4: [ RUN ] argparse_build.layout_config_and_options +13: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_1_error (60 ms) 13: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_0_error -10: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_0_error (33 ms) +6: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_parallel (13 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_serial +10: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_0_error (40 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial0_error (47 ms) +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel1_error (71 ms) +11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial0_error +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial0_error (76 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial1_error -4: [ OK ] argparse_build.minimiser_and_window (9 ms) -4: [ RUN ] argparse_build.layout_config_and_options -13: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_0_error (11 ms) +13: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_0_error (21 ms) 13: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_1_error -6: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_serial (29 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_parallel -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel1_error (45 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial0_error -9: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_parallel (29 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_serial -13: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_1_error (15 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_0_error -4: [ OK ] argparse_build.layout_config_and_options (22 ms) +9: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_parallel (129 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_serial +6: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_serial (30 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_parallel +4: [ OK ] argparse_build.layout_config_and_options (48 ms) 4: [ RUN ] argparse_build.layout_too_small_window -6: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_parallel (21 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_serial -10: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_1_error (36 ms) +13: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_1_error (23 ms) +13: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_0_error +10: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_1_error (45 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_0_error -4: [ OK ] argparse_build.layout_too_small_window (13 ms) +6: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_parallel (20 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_serial +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial1_error (49 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel0_error +4: [ OK ] argparse_build.layout_too_small_window (25 ms) 4: [ RUN ] argparse_build.layout_config_missing -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel1_error (69 ms) +6: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_serial (17 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_parallel +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel1_error (81 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial1_error (42 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel0_error -10: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_0_error (13 ms) +10: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_0_error (27 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_1_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partsuncompressed (68 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partscompressed +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial0_error (79 ms) +11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial1_error 4: [ OK ] argparse_build.layout_config_missing (13 ms) 4: [ RUN ] argparse_build.layout_config_missing_preprocessed -9: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_serial (30 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_parallel -10: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_1_error (10 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_0_error -13: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_0_error (35 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_1_error -4: [ OK ] argparse_build.layout_config_missing_preprocessed (8 ms) -4: [----------] 20 tests from argparse_build (248 ms total) +4: [ OK ] argparse_build.layout_config_missing_preprocessed (11 ms) +4: [----------] 20 tests from argparse_build (374 ms total) 4: 4: [----------] 13 tests from argparse_search 4: [ RUN ] argparse_search.no_options -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial0_error (43 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial1_error -6: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_serial (28 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_parallel -4: [ OK ] argparse_search.no_options (7 ms) +13: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_0_error (63 ms) +13: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_1_error +4: [ OK ] argparse_search.no_options (16 ms) 4: [ RUN ] argparse_search.ibf_missing -4: [ OK ] argparse_search.ibf_missing (7 ms) +10: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_1_error (36 ms) +10: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_0_error +4: [ OK ] argparse_search.ibf_missing (12 ms) 4: [ RUN ] argparse_search.ibf_wrong -4: [ OK ] argparse_search.ibf_wrong (10 ms) +6: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_parallel (54 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_serial +9: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_serial (97 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_parallel +4: [ OK ] argparse_search.ibf_wrong (12 ms) +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partscompressed (269 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partsuncompressed 4: [ RUN ] argparse_search.query_missing -9: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_parallel (35 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_serial -13: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_1_error (30 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_0_error -4: [ OK ] argparse_search.query_missing (7 ms) +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial1_error (58 ms) +11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel0_error +4: [ OK ] argparse_search.query_missing (9 ms) 4: [ RUN ] argparse_search.query_wrong -10: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_0_error (37 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel0_error (61 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel0_error (94 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel1_error -6: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_parallel (42 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_serial -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial0_error (68 ms) +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial0_error (78 ms) 7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial1_error -13: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_0_error (18 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_1_error -4: [ OK ] argparse_search.query_wrong (14 ms) +13: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_1_error (43 ms) +13: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_0_error +4: [ OK ] argparse_search.query_wrong (9 ms) 4: [ RUN ] argparse_search.output_missing -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial1_error (56 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel0_error -13: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_1_error (12 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_0_error -4: [ OK ] argparse_search.output_missing (23 ms) +10: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_0_error (53 ms) +10: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_1_error +4: [ OK ] argparse_search.output_missing (12 ms) 4: [ RUN ] argparse_search.old_index -9: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_serial (43 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_parallel -4: [ OK ] argparse_search.old_index (8 ms) +13: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_0_error (15 ms) +13: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_1_error +4: [ OK ] argparse_search.old_index (14 ms) 4: [ RUN ] argparse_search.ambiguous_index -10: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_1_error (49 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_0_error -4: [ OK ] argparse_search.ambiguous_index (5 ms) +13: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_1_error (18 ms) +13: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_0_error +6: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_serial (63 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_parallel +4: [ OK ] argparse_search.ambiguous_index (13 ms) 4: [ RUN ] argparse_search.error_treshold -6: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_serial (47 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_parallel -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partscompressed (104 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partsuncompressed -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_0_error (15 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_1_error -13: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_0_error (40 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_1_error -4: [ OK ] argparse_search.error_treshold (17 ms) +9: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_parallel (70 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_serial +4: [ OK ] argparse_search.error_treshold (9 ms) 4: [ RUN ] argparse_search.empty_query -9: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_parallel (34 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_serial -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial1_error (64 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel0_error -4: [ OK ] argparse_search.empty_query (8 ms) +10: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_1_error (46 ms) +10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_0_error +4: [ OK ] argparse_search.empty_query (10 ms) 4: [ RUN ] argparse_search.queries_too_short -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel1_error (74 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial0_error -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_1_error (15 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_0_error -6: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_parallel (26 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_serial -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel0_error (64 ms) +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel0_error (74 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel1_error -4: [ OK ] argparse_search.queries_too_short (11 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel1_error (75 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial0_error +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial1_error (71 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel0_error +4: [ OK ] argparse_search.queries_too_short (13 ms) 4: [ RUN ] argparse_search.queries_have_variance -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_0_error (12 ms) +13: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_0_error (44 ms) +13: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_1_error +10: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_0_error (19 ms) +10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_1_error +10: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_1_error (20 ms) +10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_0_error +6: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_parallel (72 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_serial +10: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_0_error (14 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_1_error -13: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_1_error (38 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_0_error -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_1_error (26 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_0_error -4: [ OK ] argparse_search.queries_have_variance (33 ms) +4: [ OK ] argparse_search.queries_have_variance (43 ms) 4: [ RUN ] argparse_search.queries_unsupported_length -13: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_0_error (17 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_1_error -9: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_serial (50 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_parallel -6: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_serial (40 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_parallel -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel0_error (52 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel1_error -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_0_error (11 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_1_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_parallel (11 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_serial -9: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_parallel (15 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_serial -13: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_1_error (18 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_0_error -4: [ OK ] argparse_search.queries_unsupported_length (21 ms) -4: [----------] 13 tests from argparse_search (177 ms total) +9: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_serial (74 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_parallel +13: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_1_error (49 ms) +13: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_0_error +4: [ OK ] argparse_search.queries_unsupported_length (16 ms) +4: [----------] 13 tests from argparse_search (193 ms total) 4: 4: [----------] 3 tests from argparse_upgrade 4: [ RUN ] argparse_upgrade.exclusive_options -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial0_error (64 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial1_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_serial (13 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_parallel -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_1_error (16 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_0_error -4: [ OK ] argparse_upgrade.exclusive_options (9 ms) +10: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_1_error (29 ms) +10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_0_error +4: [ OK ] argparse_upgrade.exclusive_options (8 ms) 4: [ RUN ] argparse_upgrade.ambiguous_index -9: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_serial (17 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_parallel -13: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_0_error (15 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_1_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_parallel (11 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_serial +13: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_0_error (23 ms) +13: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_1_error 4: [ OK ] argparse_upgrade.ambiguous_index (11 ms) 4: [ RUN ] argparse_upgrade.unsupported_index -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel1_error (78 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial0_error (92 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial1_error +10: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_0_error (22 ms) +10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_1_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel1_error (103 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial0_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_parallel (13 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_serial -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partsuncompressed (111 ms) -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_0_error (20 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_1_error -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partscompressed -4: [ OK ] argparse_upgrade.unsupported_index (6 ms) -4: [----------] 3 tests from argparse_upgrade (27 ms total) +4: [ OK ] argparse_upgrade.unsupported_index (14 ms) +4: [----------] 3 tests from argparse_upgrade (34 ms total) 4: -13: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_1_error (14 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_0_error 4: [----------] 2 tests from argparse_prepare 4: [ RUN ] argparse_prepare.no_options -6: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_serial (15 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_parallel -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel1_error (48 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial0_error +6: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_serial (64 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_parallel +13: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_1_error (22 ms) +13: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_0_error 4: [ OK ] argparse_prepare.no_options (9 ms) 4: [ RUN ] argparse_prepare.cutoffs -9: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_serial (15 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_parallel -13: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_0_error (13 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_1_error -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_1_error (18 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_0_error -4: [ OK ] argparse_prepare.cutoffs (8 ms) -4: [----------] 2 tests from argparse_prepare (18 ms total) +10: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_1_error (23 ms) +10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_0_error +4: [ OK ] argparse_prepare.cutoffs (12 ms) +4: [----------] 2 tests from argparse_prepare (21 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 41 tests from 5 test suites ran. (494 ms total) +4: [==========] 41 tests from 5 test suites ran. (674 ms total) 4: [ PASSED ] 41 tests. - 6/14 Test #4: cli/argument_parsing/options_test ........... Passed 0.50 sec -6: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_parallel (19 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_serial -13: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_1_error (16 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_0_error -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_0_error (25 ms) + 6/14 Test #4: cli/argument_parsing/options_test ........... Passed 0.68 sec +13: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_0_error (25 ms) +13: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_1_error +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel0_error (145 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel1_error +10: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_0_error (30 ms) +10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_1_error +13: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_1_error (24 ms) +13: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_0_error +10: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_1_error (19 ms) +10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_0_error +9: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_parallel (123 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_serial +6: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_parallel (70 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_serial +13: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_0_error (27 ms) +13: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_1_error +10: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_0_error (19 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_1_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_parallel (29 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_serial -13: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_0_error (14 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_1_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_serial (20 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_parallel -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial1_error (74 ms) +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial0_error (93 ms) +11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial1_error +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial1_error (98 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel0_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial0_error (45 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial1_error -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_1_error (12 ms) +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partsuncompressed (291 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partscompressed +13: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_1_error (26 ms) +13: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_0_error +10: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_1_error (32 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial0_error (64 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial1_error -13: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_1_error (15 ms) +13: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_0_error (14 ms) +13: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_1_error +13: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_1_error (18 ms) 13: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_0_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_parallel (17 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_serial -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_0_error (14 ms) +10: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_0_error (19 ms) 10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_1_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_serial (27 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_parallel -13: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_0_error (15 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel0_error (64 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel1_error +13: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_0_error (17 ms) 13: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_1_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_serial (19 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_parallel -13: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_1_error (12 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_0_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial1_error (69 ms) +11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel0_error 10: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_1_error (20 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_0_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial1_error (45 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel0_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_parallel (31 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_serial -13: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_0_error (14 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_1_error -10: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_0_error (13 ms) +13: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_1_error (19 ms) +13: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_0_error +10: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_0_error (22 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel0_error (57 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel1_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_parallel (32 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_serial -13: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_1_error (13 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_0_error -10: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_1_error (18 ms) +13: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_0_error (19 ms) +13: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_1_error +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel1_error (153 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial0_error +6: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_serial (134 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_parallel +10: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_1_error (22 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial1_error (64 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel0_error -13: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_0_error (15 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_1_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_serial (28 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_parallel -13: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_1_error (11 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_0_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partscompressed (149 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partsuncompressed -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel1_error (44 ms) +13: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_1_error (17 ms) +13: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_0_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel0_error (62 ms) +11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel1_error +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel1_error (67 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial0_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_serial (41 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_parallel -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel0_error (67 ms) -10: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_0_error (43 ms) +13: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_0_error (16 ms) +13: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_1_error +10: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_0_error (39 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_1_error -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel1_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_parallel (36 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_serial -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel0_error (58 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel1_error -13: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_0_error (40 ms) +13: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_1_error (16 ms) +13: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_0_error +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial0_error (59 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial1_error +13: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_0_error (38 ms) 13: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_1_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_parallel (31 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_serial -10: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_1_error (38 ms) +10: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_1_error (42 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial0_error (56 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial1_error -10: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_0_error (10 ms) +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel1_error (67 ms) +11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial0_error +6: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_parallel (90 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_serial +9: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_serial (225 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_parallel +10: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_0_error (19 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_1_error -13: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_1_error (33 ms) +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial0_error (118 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial1_error +13: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_1_error (49 ms) 13: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_0_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_serial (51 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_parallel -10: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_1_error (14 ms) +10: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_1_error (32 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel1_error (47 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial0_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_serial (42 ms) -6: [----------] 24 tests from build_hibf_suite/build_hibf (591 ms total) -6: -6: [----------] Global test environment tear-down -6: [==========] 26 tests from 2 test suites ran. (702 ms total) -6: [ PASSED ] 26 tests. - 7/14 Test #6: cli/build/build_hibf_test ................... Passed 0.71 sec -13: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_0_error (15 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_1_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel1_error (80 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial0_error -13: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_1_error (17 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_0_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_parallel (34 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_serial -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial1_error (50 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial1_error (76 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel0_error -10: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_0_error (37 ms) -10: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial0_error (43 ms) +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial0_error (72 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial1_error -13: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_0_error (31 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_1_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_serial (36 ms) -9: [----------] 24 tests from build_ibf_suite/build_ibf (718 ms total) -9: -9: [----------] Global test environment tear-down -9: [==========] 25 tests from 2 test suites ran. (750 ms total) -9: [ PASSED ] 25 tests. - 8/14 Test #9: cli/build/build_ibf_test .................... Passed 0.76 sec -10: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_1_error (35 ms) +10: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_0_error (55 ms) +10: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_1_error +13: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_0_error (59 ms) +13: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_1_error +9: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_parallel (120 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_serial +13: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_1_error (21 ms) +13: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_0_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial1_error (75 ms) +11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel0_error +10: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_1_error (55 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_0_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partsuncompressed (155 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partscompressed -13: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_1_error (23 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_0_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial0_error (70 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial1_error -13: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_0_error (16 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_1_error -10: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_0_error (18 ms) +6: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_serial (157 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_parallel +13: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_0_error (44 ms) +13: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_1_error +6: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_parallel (16 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_serial +10: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_0_error (24 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel0_error (71 ms) +6: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_serial (16 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_parallel +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel0_error (135 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel1_error -13: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_1_error (10 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_0_error -10: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_1_error (14 ms) +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial1_error (179 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel0_error +6: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_parallel (14 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_serial +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partscompressed (402 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partsuncompressed +10: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_1_error (31 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial1_error (71 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel0_error -13: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_0_error (33 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_1_error -10: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_0_error (36 ms) +13: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_1_error (50 ms) +13: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_0_error +6: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_serial (18 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_parallel +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel0_error (94 ms) +11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel1_error +13: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_0_error (22 ms) +13: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_1_error +10: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_0_error (41 ms) 10: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_1_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial1_error (67 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel0_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partscompressed (86 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partsuncompressed -13: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_1_error (53 ms) +13: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_1_error (24 ms) +13: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_0_error +9: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_serial (145 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_parallel +6: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_parallel (59 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_serial 12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel1_error (89 ms) 12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial0_error -13: [----------] 36 tests from search_ibf_suite/search_ibf (802 ms total) -13: -13: [----------] Global test environment tear-down -13: [==========] 38 tests from 2 test suites ran. (869 ms total) -13: [ PASSED ] 38 tests. - 9/14 Test #13: cli/search/search_ibf_test .................. Passed 0.87 sec -10: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_1_error (55 ms) -10: [----------] 36 tests from search_hibf_suite/search_hibf (863 ms total) +9: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_parallel (26 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_serial +10: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_1_error (47 ms) +10: [----------] 36 tests from search_hibf_suite/search_hibf (1181 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 37 tests from 2 test suites ran. (886 ms total) +10: [==========] 37 tests from 2 test suites ran. (1228 ms total) 10: [ PASSED ] 37 tests. -10/14 Test #10: cli/search/search_hibf_test ................. Passed 0.89 sec -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel0_error (53 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel0_error (94 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel1_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partsuncompressed (70 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partscompressed -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel1_error (43 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial0_error (67 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel1_error (77 ms) + 7/14 Test #10: cli/search/search_hibf_test ................. Passed 1.24 sec +9: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_serial (18 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_parallel +13: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_0_error (50 ms) +13: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_1_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel1_error (91 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial0_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial0_error (68 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial1_error (77 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel0_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partscompressed (109 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partsuncompressed -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial0_error (72 ms) +6: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_serial (46 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_parallel +9: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_parallel (20 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_serial +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel0_error (139 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel1_error +9: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_serial (23 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_parallel +13: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_1_error (43 ms) +13: [----------] 36 tests from search_ibf_suite/search_ibf (1142 ms total) +13: +13: [----------] Global test environment tear-down +13: [==========] 38 tests from 2 test suites ran. (1275 ms total) +13: [ PASSED ] 38 tests. + 8/14 Test #13: cli/search/search_ibf_test .................. Passed 1.28 sec +6: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_parallel (44 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_serial +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial0_error (87 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial1_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial0_error (79 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial1_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial1_error (59 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel0_error (55 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial1_error (69 ms) +6: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_serial (45 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_parallel +9: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_parallel (93 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_serial +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial1_error (78 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel0_error +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel1_error (133 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial0_error +6: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_parallel (66 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_serial +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial1_error (83 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel0_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partsuncompressed (91 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partscompressed -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel1_error (52 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial0_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel0_error (84 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel0_error (62 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel0_error (70 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel1_error +9: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_serial (113 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_parallel +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel0_error (91 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial0_error (53 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial1_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel1_error (71 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel1_error (65 ms) +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial0_error (119 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial1_error +6: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_serial (106 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_parallel +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partsuncompressed (405 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partscompressed +9: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_parallel (89 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_serial +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel1_error (146 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial0_error +6: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_parallel (83 ms) +6: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_serial +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel1_error (101 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial1_error (72 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel0_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partscompressed (151 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partsuncompressed -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial0_error (64 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel0_error (59 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial0_error (70 ms) +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial1_error (138 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel0_error +9: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_serial (85 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_parallel +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial0_error (71 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial1_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial0_error (84 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial1_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial1_error (85 ms) -7: [----------] 24 tests from build_ibf_compressed_suite/build_ibf_compressed (1384 ms total) -7: -7: [----------] Global test environment tear-down -7: [==========] 25 tests from 2 test suites ran. (1385 ms total) -7: [ PASSED ] 25 tests. -11/14 Test #7: cli/build/build_ibf_compressed_test ......... Passed 1.39 sec -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial1_error (61 ms) +6: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_serial (107 ms) +6: [----------] 24 tests from build_hibf_suite/build_hibf (1419 ms total) +6: +6: [----------] Global test environment tear-down +6: [==========] 26 tests from 2 test suites ran. (1731 ms total) +6: [ PASSED ] 26 tests. + 9/14 Test #6: cli/build/build_hibf_test ................... Passed 1.74 sec +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial1_error (62 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel0_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial1_error (83 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel1_error (73 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial0_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partsuncompressed (143 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partscompressed -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel0_error (65 ms) +9: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_parallel (125 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_serial +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel0_error (140 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel1_error +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel0_error (91 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel1_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel0_error (94 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial0_error (62 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial1_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partscompressed (85 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partsuncompressed -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel1_error (54 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel1_error (94 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial0_error +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel1_error (125 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial0_error +9: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_serial (153 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_parallel +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel1_error (91 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial1_error (53 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel0_error (35 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel1_error (34 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial0_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partsuncompressed (81 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partscompressed -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial0_error (81 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial0_error (88 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial1_error +9: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_parallel (99 ms) +9: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_serial +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial0_error (92 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial0_error (28 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial1_error (39 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial1_error (74 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial1_error (81 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel0_error +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial0_error (181 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial1_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial1_error (86 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel0_error (35 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel0_error (58 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel1_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel0_error (43 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel0_error (52 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel1_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partscompressed (112 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partsuncompressed -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel1_error (30 ms) +9: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_serial (160 ms) +9: [----------] 24 tests from build_ibf_suite/build_ibf (2109 ms total) +9: +9: [----------] Global test environment tear-down +9: [==========] 25 tests from 2 test suites ran. (2209 ms total) +9: [ PASSED ] 25 tests. +10/14 Test #9: cli/build/build_ibf_test .................... Passed 2.22 sec +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel1_error (57 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial0_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel1_error (42 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel1_error (42 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial0_error (37 ms) +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partscompressed (696 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partsuncompressed +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial0_error (52 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial1_error +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial1_error (155 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel0_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial0_error (44 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial0_error (42 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial1_error (34 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial1_error (44 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel0_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial1_error (48 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel0_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partsuncompressed (112 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partscompressed -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial1_error (52 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel0_error (58 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel0_error (85 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel1_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel0_error (67 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel0_error (68 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel1_error (60 ms) +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel0_error (141 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel1_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel1_error (78 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel1_error (60 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial0_error (49 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel1_error (86 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial0_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial0_error (63 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial1_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partscompressed (160 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partsuncompressed -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial1_error (60 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial0_error (75 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial1_error +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel1_error (150 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial0_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial1_error (73 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial0_error (65 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel0_error (43 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial1_error (85 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel0_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel0_error (55 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial1_error (50 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel1_error (127 ms) +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel1_error (69 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial0_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partsuncompressed (312 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partscompressed -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial0_error (110 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel0_error (93 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel1_error +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial0_error (199 ms) +7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial1_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial0_error (78 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel0_error (240 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial1_error (44 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel1_error (90 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial0_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial1_error (88 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel0_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partscompressed (84 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partsuncompressed -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel1_error (90 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel0_error (65 ms) +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partsuncompressed (707 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partscompressed +7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial1_error (296 ms) +7: [----------] 24 tests from build_ibf_compressed_suite/build_ibf_compressed (3064 ms total) +7: +7: [----------] Global test environment tear-down +7: [==========] 25 tests from 2 test suites ran. (3065 ms total) +7: [ PASSED ] 25 tests. +11/14 Test #7: cli/build/build_ibf_compressed_test ......... Passed 3.07 sec +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial0_error (259 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial1_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel0_error (224 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel1_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partsuncompressed (74 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partscompressed -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel1_error (54 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial1_error (208 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel0_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel1_error (224 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial0_error (75 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial0_error (68 ms) +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partscompressed (519 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partsuncompressed +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial0_error (154 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial1_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partscompressed (109 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partsuncompressed -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial1_error (83 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial1_error (98 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel0_error (291 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel1_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial1_error (133 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel0_error (133 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel1_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partsuncompressed (158 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partscompressed -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel0_error (99 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel1_error (232 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial0_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel0_error (203 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel1_error (54 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel1_error (61 ms) +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partsuncompressed (464 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partscompressed +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel1_error (116 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial0_error (62 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial0_error (91 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial0_error (208 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial1_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial0_error (172 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial1_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partscompressed (191 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partsuncompressed -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial1_error (133 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial1_error (95 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial1_error (195 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel0_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial1_error (163 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel0_error (76 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel1_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partsuncompressed (153 ms) -8: [----------] 24 tests from build_ibf_partitioned_suite/build_ibf_partitioned (2950 ms total) -8: -8: [----------] Global test environment tear-down -8: [==========] 25 tests from 2 test suites ran. (3060 ms total) -8: [ PASSED ] 25 tests. -12/14 Test #8: cli/build/build_ibf_partitioned_test ........ Passed 3.06 sec -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel0_error (74 ms) +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partscompressed (438 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partsuncompressed +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel0_error (158 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel1_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel0_error (159 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel1_error (73 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel1_error (74 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel1_error (175 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial0_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel1_error (190 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial0_error (88 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial0_error (72 ms) +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial0_error (166 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial1_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial0_error (160 ms) 11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial1_error (76 ms) -12: [----------] 48 tests from search_ibf_preprocessing_suite/search_ibf_preprocessing (3227 ms total) -12: -12: [----------] Global test environment tear-down -12: [==========] 49 tests from 2 test suites ran. (3259 ms total) -12: [ PASSED ] 49 tests. -13/14 Test #12: cli/search/search_ibf_preprocessing_test .... Passed 3.26 sec -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial1_error (69 ms) -11: [----------] 48 tests from search_hibf_preprocessing_suite/search_hibf_preprocessing (3159 ms total) +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partsuncompressed (439 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partscompressed +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial1_error (132 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel0_error +11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial1_error (105 ms) +11: [----------] 48 tests from search_hibf_preprocessing_suite/search_hibf_preprocessing (4741 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 49 tests from 2 test suites ran. (3275 ms total) +11: [==========] 49 tests from 2 test suites ran. (4905 ms total) 11: [ PASSED ] 49 tests. -14/14 Test #11: cli/search/search_hibf_preprocessing_test ... Passed 3.28 sec +12/14 Test #11: cli/search/search_hibf_preprocessing_test ... Passed 4.91 sec +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel0_error (119 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel1_error +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel1_error (92 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial0_error +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial0_error (85 ms) +12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial1_error +12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial1_error (113 ms) +12: [----------] 48 tests from search_ibf_preprocessing_suite/search_ibf_preprocessing (5195 ms total) +12: +12: [----------] Global test environment tear-down +12: [==========] 49 tests from 2 test suites ran. (5254 ms total) +12: [ PASSED ] 49 tests. +13/14 Test #12: cli/search/search_ibf_preprocessing_test .... Passed 5.26 sec +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partscompressed (593 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partsuncompressed +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partsuncompressed (549 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partscompressed +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partscompressed (208 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partsuncompressed +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partsuncompressed (222 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partscompressed +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partscompressed (391 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partsuncompressed +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partsuncompressed (342 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partscompressed +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partscompressed (563 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partsuncompressed +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partsuncompressed (531 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partscompressed +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partscompressed (192 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partsuncompressed +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partsuncompressed (181 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partscompressed +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partscompressed (337 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partsuncompressed +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partsuncompressed (369 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partscompressed +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partscompressed (566 ms) +8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partsuncompressed +8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partsuncompressed (484 ms) +8: [----------] 24 tests from build_ibf_partitioned_suite/build_ibf_partitioned (10170 ms total) +8: +8: [----------] Global test environment tear-down +8: [==========] 25 tests from 2 test suites ran. (10356 ms total) +8: [ PASSED ] 25 tests. +14/14 Test #8: cli/build/build_ibf_partitioned_test ........ Passed 10.36 sec 100% tests passed, 0 tests failed out of 14 -Total Test time (real) = 3.32 sec +Total Test time (real) = 10.38 sec make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' #dh_auto_test --arch --builddirectory build_performance #dh_auto_test --arch --builddirectory build_header dh_auto_test --arch --builddirectory build_snippet - cd build_snippet && make -j42 test ARGS\+=--verbose ARGS\+=-j42 + cd build_snippet && make -j20 test ARGS\+=--verbose ARGS\+=-j20 make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j42 +/usr/bin/ctest --force-new-ctest-process --verbose -j20 UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/DartConfiguration.tcl Test project /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet @@ -4791,13 +4827,13 @@ 2: -- EXPECTED_OUTPUT_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/bin_indices_of_ibf.out 2: -- ACTUAL_ERROR_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/bin_indices_of_ibf_snippet.err 2: -- EXPECTED_ERROR_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/bin_indices_of_ibf.err -2: -- Output matches /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/bin_indices_of_ibf.out 4: -- TARGET_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/filename_of_user_bin_snippet 4: -- SOURCE_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/filename_of_user_bin.cpp 4: -- ACTUAL_OUTPUT_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/filename_of_user_bin_snippet.out 4: -- EXPECTED_OUTPUT_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/filename_of_user_bin.out 4: -- ACTUAL_ERROR_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/filename_of_user_bin_snippet.err 4: -- EXPECTED_ERROR_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/filename_of_user_bin.err +2: -- Output matches /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/bin_indices_of_ibf.out 6: -- TARGET_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/snippet_main_snippet 6: -- SOURCE_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.cpp 6: -- ACTUAL_OUTPUT_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/snippet_main_snippet.out @@ -4808,21 +4844,21 @@ 6: -- Output matches /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.out 6: -- Output matches /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.err 4/6 Test #6: snippet/snippet_main_snippet_cmp_output ................ Passed 0.03 sec -5/6 Test #2: snippet/hibf/bin_indices_of_ibf_snippet_cmp_output ..... Passed 0.04 sec -6/6 Test #4: snippet/hibf/filename_of_user_bin_snippet_cmp_output ... Passed 0.05 sec +5/6 Test #2: snippet/hibf/bin_indices_of_ibf_snippet_cmp_output ..... Passed 0.07 sec +6/6 Test #4: snippet/hibf/filename_of_user_bin_snippet_cmp_output ... Passed 0.07 sec 100% tests passed, 0 tests failed out of 6 -Total Test time (real) = 0.06 sec +Total Test time (real) = 0.08 sec make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' debian/rules override_dh_auto_test-indep make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_test --builddirectory doc_build - cd doc_build && make -j42 test ARGS\+=--verbose ARGS\+=-j42 + cd doc_build && make -j20 test ARGS\+=--verbose ARGS\+=-j20 make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j42 +/usr/bin/ctest --force-new-ctest-process --verbose -j20 UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/DartConfiguration.tcl Test project /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build @@ -4842,11 +4878,11 @@ test ! -s "doxygen.cerr"" 1: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build 1: Test timeout computed to be: 10000000 -1/1 Test #1: doc_no_warnings_test ............. Passed 1.50 sec +1/1 Test #1: doc_no_warnings_test ............. Passed 2.32 sec 100% tests passed, 0 tests failed out of 1 -Total Test time (real) = 1.50 sec +Total Test time (real) = 2.32 sec make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' create-stamp debian/debhelper-build-stamp @@ -4854,7 +4890,7 @@ debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_install --indep --builddir doc_build - cd doc_build && make -j42 install DESTDIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd doc_build && make -j20 install DESTDIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' /usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds/test/documentation -B/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4867,7 +4903,7 @@ make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_install -Nseqan-raptor-doc - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds -B/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4900,9 +4936,9 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'seqan-raptor-doc' in '../seqan-raptor-doc_3.0.1+ds-9_all.deb'. -dpkg-deb: building package 'seqan-raptor-dbgsym' in '../seqan-raptor-dbgsym_3.0.1+ds-9_amd64.deb'. dpkg-deb: building package 'seqan-raptor' in '../seqan-raptor_3.0.1+ds-9_amd64.deb'. +dpkg-deb: building package 'seqan-raptor-dbgsym' in '../seqan-raptor-dbgsym_3.0.1+ds-9_amd64.deb'. +dpkg-deb: building package 'seqan-raptor-doc' in '../seqan-raptor-doc_3.0.1+ds-9_all.deb'. dpkg-genbuildinfo --build=binary -O../seqan-raptor_3.0.1+ds-9_amd64.buildinfo dpkg-genchanges --build=binary -O../seqan-raptor_3.0.1+ds-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4910,12 +4946,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/351269/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/351269/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2357 and its subdirectories -I: Current time: Fri Apr 17 07:31:14 -12 2026 -I: pbuilder-time-stamp: 1776454274 +I: removing directory /srv/workspace/pbuilder/351269 and its subdirectories +I: Current time: Sun Mar 16 03:33:06 +14 2025 +I: pbuilder-time-stamp: 1742045586