Diff of the two buildlogs: -- --- b1/build.log 2024-04-24 18:20:53.851546158 +0000 +++ b2/build.log 2024-04-24 18:24:37.421989046 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue May 27 12:43:20 -12 2025 -I: pbuilder-time-stamp: 1748393000 +I: Current time: Thu Apr 25 08:21:34 +14 2024 +I: pbuilder-time-stamp: 1713982894 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying 0004-missing-include.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1216905/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3105431/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 24 18:21 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3105431/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3105431/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='21e15b5d62c24097befd16421b9e5fff' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1216905' - PS1='# ' - PS2='> ' + INVOCATION_ID=85a46d0bca5548e38149617b61337a03 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3105431 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rkRg8uGc/pbuilderrc_89p5 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rkRg8uGc/b1 --logfile b1/build.log repeatmasker-recon_1.08-8.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rkRg8uGc/pbuilderrc_uETF --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rkRg8uGc/b2 --logfile b2/build.log repeatmasker-recon_1.08-8.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 27 17:46 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1216905/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 22 12:43 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3105431/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -88,7 +120,7 @@ Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19722 files and directories currently installed.) +(Reading database ... 19892 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -141,10 +173,10 @@ Get: 28 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] -Fetched 19.0 MB in 2s (9031 kB/s) +Fetched 19.0 MB in 5s (3763 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19722 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19892 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. @@ -276,7 +308,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/repeatmasker-recon-1.08/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../repeatmasker-recon_1.08-8_source.changes +I: user script /srv/workspace/pbuilder/3105431/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3105431/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/repeatmasker-recon-1.08/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../repeatmasker-recon_1.08-8_source.changes dpkg-buildpackage: info: source package repeatmasker-recon dpkg-buildpackage: info: source version 1.08-8 dpkg-buildpackage: info: source distribution unstable @@ -286,7 +322,7 @@ debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src - cd src && make -j42 clean + cd src && make -j20 clean make[1]: Entering directory '/build/reproducible-path/repeatmasker-recon-1.08/src' rm -f imagespread eledef eleredef edgeredef famdef *.o *~ *.Addrs *.Counts *.pixie Makefile.bak core imagespread eledef eleredef edgeredef famdef TAGS make[1]: Leaving directory '/build/reproducible-path/repeatmasker-recon-1.08/src' @@ -302,7 +338,7 @@ dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src dh_auto_build -O--sourcedirectory=src - cd src && make -j42 "INSTALL=install --strip-program=true" + cd src && make -j20 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/repeatmasker-recon-1.08/src' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/repeatmasker-recon-1.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro imagespread.c -o imagespread gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/repeatmasker-recon-1.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro eledef.c -o eledef @@ -310,14 +346,7 @@ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/repeatmasker-recon-1.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro edgeredef.c -o edgeredef gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/repeatmasker-recon-1.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro famdef.c -o famdef In file included from ele.h:1, - from edgeredef.c:1: -msps.h: In function 'scan_msp': -In file included from imagespread.c:2: -msps.h: In function 'scan_msp': -In file included from eledef.c:1: -msps.h: In function 'scan_msp': -In file included from ele.h:1, - from famdef.c:1: + from eleredef.c:5: msps.h: In function 'scan_msp': msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { @@ -325,60 +354,12 @@ | | | | long int * int32_t * {aka int *} | %d -msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] - 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { - | ~~^ ~~~~~~~~~~~ - | | | - | long int * int32_t * {aka int *} - | %d -msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] - 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { - | ~~^ ~~~~~~~~~~~ - | | | - | long int * int32_t * {aka int *} - | %d -msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] - 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { - | ~~^ ~~~~~~~~~~~ - | | | - | long int * int32_t * {aka int *} - | %d -msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] - 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { - | ~~^ ~~~~~~~~~~~~~~~~~~~ - | | | - | long int * int32_t * {aka int *} - | %d msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d -msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] - 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { - | ~~^ ~~~~~~~~~~~~~~~~~~~ - | | | - | long int * int32_t * {aka int *} - | %d -msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] - 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { - | ~~^ ~~~~~~~~~~~~~~~~~~~ - | | | - | long int * int32_t * {aka int *} - | %d -msps.h:116:36: warning: format '%ld' expects argument of type 'long int *', but argument 6 has type 'int32_t *' {aka 'int *'} [-Wformat=] - 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { - | ~~^ ~~~~~~~~~~~~~~~~~~~ - | | | - | long int * int32_t * {aka int *} - | %d -msps.h:116:36: warning: format '%ld' expects argument of type 'long int *', but argument 6 has type 'int32_t *' {aka 'int *'} [-Wformat=] - 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { - | ~~^ ~~~~~~~~~~~~~~~~~~~ - | | | - | long int * int32_t * {aka int *} - | %d msps.h:116:36: warning: format '%ld' expects argument of type 'long int *', but argument 6 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ @@ -391,42 +372,65 @@ | | | | long int * int32_t * {aka int *} | %d -msps.h:116:43: warning: format '%ld' expects argument of type 'long int *', but argument 8 has type 'int32_t *' {aka 'int *'} [-Wformat=] +msps.h:116:47: warning: format '%ld' expects argument of type 'long int *', but argument 9 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { - | ~~^ ~~~~~~~~~~~~~~~~~~~ - | | | - | long int * int32_t * {aka int *} - | %d -msps.h:116:43: warning: format '%ld' expects argument of type 'long int *', but argument 8 has type 'int32_t *' {aka 'int *'} [-Wformat=] + | ~~^ ~~~~~~~~~~~~~~~~~~~ + | | | + | long int * int32_t * {aka int *} + | %d +In file included from ele.h:1, + from edgeredef.c:1: +msps.h: In function 'scan_msp': +msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { - | ~~^ ~~~~~~~~~~~~~~~~~~~ - | | | - | long int * int32_t * {aka int *} - | %d + | ~~^ ~~~~~~~~~~~ + | | | + | long int * int32_t * {aka int *} + | %d +msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] + 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { + | ~~^ ~~~~~~~~~~~~~~~~~~~ + | | | + | long int * int32_t * {aka int *} + | %d msps.h:116:36: warning: format '%ld' expects argument of type 'long int *', but argument 6 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d -msps.h:116:47: warning: format '%ld' expects argument of type 'long int *', but argument 9 has type 'int32_t *' {aka 'int *'} [-Wformat=] +msps.h:116:43: warning: format '%ld' expects argument of type 'long int *', but argument 8 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { - | ~~^ ~~~~~~~~~~~~~~~~~~~ - | | | - | long int * int32_t * {aka int *} - | %d + | ~~^ ~~~~~~~~~~~~~~~~~~~ + | | | + | long int * int32_t * {aka int *} + | %d msps.h:116:47: warning: format '%ld' expects argument of type 'long int *', but argument 9 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long int * int32_t * {aka int *} | %d -msps.h:116:47: warning: format '%ld' expects argument of type 'long int *', but argument 9 has type 'int32_t *' {aka 'int *'} [-Wformat=] +In file included from imagespread.c:2: +msps.h: In function 'scan_msp': +msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { - | ~~^ ~~~~~~~~~~~~~~~~~~~ - | | | - | long int * int32_t * {aka int *} - | %d + | ~~^ ~~~~~~~~~~~ + | | | + | long int * int32_t * {aka int *} + | %d +msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] + 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { + | ~~^ ~~~~~~~~~~~~~~~~~~~ + | | | + | long int * int32_t * {aka int *} + | %d +msps.h:116:36: warning: format '%ld' expects argument of type 'long int *', but argument 6 has type 'int32_t *' {aka 'int *'} [-Wformat=] + 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { + | ~~^ ~~~~~~~~~~~~~~~~~~~ + | | | + | long int * int32_t * {aka int *} + | %d msps.h:116:43: warning: format '%ld' expects argument of type 'long int *', but argument 8 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ @@ -439,13 +443,8 @@ | | | | long int * int32_t * {aka int *} | %d -In file included from msps.h:4: -seqlist.h: In function 'GetSeqNames': -seqlist.h:19:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 19 | fgets(line, 255, seq_list); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ele.h:1, - from eleredef.c:5: + from famdef.c:1: msps.h: In function 'scan_msp': msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { @@ -453,6 +452,20 @@ | | | | long int * int32_t * {aka int *} | %d +In file included from eledef.c:1: +msps.h: In function 'scan_msp': +msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] + 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { + | ~~^ ~~~~~~~~~~~~~~~~~~~ + | | | + | long int * int32_t * {aka int *} + | %d +msps.h:116:25: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int32_t *' {aka 'int *'} [-Wformat=] + 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { + | ~~^ ~~~~~~~~~~~ + | | | + | long int * int32_t * {aka int *} + | %d msps.h:116:32: warning: format '%ld' expects argument of type 'long int *', but argument 5 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ @@ -465,6 +478,18 @@ | | | | long int * int32_t * {aka int *} | %d +msps.h:116:36: warning: format '%ld' expects argument of type 'long int *', but argument 6 has type 'int32_t *' {aka 'int *'} [-Wformat=] + 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { + | ~~^ ~~~~~~~~~~~~~~~~~~~ + | | | + | long int * int32_t * {aka int *} + | %d +msps.h:116:43: warning: format '%ld' expects argument of type 'long int *', but argument 8 has type 'int32_t *' {aka 'int *'} [-Wformat=] + 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { + | ~~^ ~~~~~~~~~~~~~~~~~~~ + | | | + | long int * int32_t * {aka int *} + | %d msps.h:116:43: warning: format '%ld' expects argument of type 'long int *', but argument 8 has type 'int32_t *' {aka 'int *'} [-Wformat=] 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { | ~~^ ~~~~~~~~~~~~~~~~~~~ @@ -477,6 +502,29 @@ | | | | long int * int32_t * {aka int *} | %d +msps.h:116:47: warning: format '%ld' expects argument of type 'long int *', but argument 9 has type 'int32_t *' {aka 'int *'} [-Wformat=] + 116 | if (sscanf(line, "%ld %f %ld %ld %s %ld %ld %s \n", &(m->score), &(m->iden), &(m->query.frag.lb), &(m->query.frag.rb), qname, &(m->sbjct.frag.lb), &(m->sbjct.frag.rb), sname) != 8) { + | ~~^ ~~~~~~~~~~~~~~~~~~~ + | | | + | long int * int32_t * {aka int *} + | %d +In file included from msps.h:4: +seqlist.h: In function 'GetSeqNames': +seqlist.h:19:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 19 | fgets(line, 255, seq_list); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +eleredef.c: In function 'main': +eleredef.c:239:70: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] + 239 | printf("eleredef: Error! Could not allocate memory for img_ptr: %d bytes requested\n", ( MAX_IMG*sizeof(IMAGE_t *) ) ); + | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + | | | + | int long unsigned int + | %ld +In file included from msps.h:4: +seqlist.h: In function 'GetSeqNames': +seqlist.h:19:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 19 | fgets(line, 255, seq_list); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from msps.h:4: seqlist.h: In function 'GetSeqNames': seqlist.h:19:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] @@ -505,22 +553,10 @@ seqlist.h:19:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 19 | fgets(line, 255, seq_list); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -eleredef.c: In function 'main': -eleredef.c:239:70: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] - 239 | printf("eleredef: Error! Could not allocate memory for img_ptr: %d bytes requested\n", ( MAX_IMG*sizeof(IMAGE_t *) ) ); - | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - | | | - | int long unsigned int - | %ld edgeredef.c: In function 'general_edge_redef': edgeredef.c:200:5: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | system(command); | ^~~~~~~~~~~~~~~ -In file included from msps.h:4: -seqlist.h: In function 'GetSeqNames': -seqlist.h:19:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 19 | fgets(line, 255, seq_list); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/repeatmasker-recon-1.08/src' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/repeatmasker-recon-1.08' @@ -535,7 +571,7 @@ mkdir -p bin make[1]: Leaving directory '/build/reproducible-path/repeatmasker-recon-1.08' dh_auto_install --destdir=debian/repeatmasker-recon/ -O--sourcedirectory=src - cd src && make -j42 install DESTDIR=/build/reproducible-path/repeatmasker-recon-1.08/debian/repeatmasker-recon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd src && make -j20 install DESTDIR=/build/reproducible-path/repeatmasker-recon-1.08/debian/repeatmasker-recon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/repeatmasker-recon-1.08/src' cp imagespread eledef eleredef edgeredef famdef ../bin/ make[1]: Leaving directory '/build/reproducible-path/repeatmasker-recon-1.08/src' @@ -573,12 +609,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3105431/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3105431/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1216905 and its subdirectories -I: Current time: Tue May 27 12:43:53 -12 2025 -I: pbuilder-time-stamp: 1748393033 +I: removing directory /srv/workspace/pbuilder/3105431 and its subdirectories +I: Current time: Thu Apr 25 08:24:36 +14 2024 +I: pbuilder-time-stamp: 1713983076