Diff of the two buildlogs: -- --- b1/build.log 2024-04-25 12:24:54.797689866 +0000 +++ b2/build.log 2024-04-25 12:54:32.777885848 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 28 06:45:15 -12 2025 -I: pbuilder-time-stamp: 1748457915 +I: Current time: Fri Apr 26 02:24:58 +14 2024 +I: pbuilder-time-stamp: 1714047898 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4190141/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2643150/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 25 12:25 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2643150/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2643150/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='ff1f07553e5b46428240c66d6399bbc7' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4190141' - PS1='# ' - PS2='> ' + INVOCATION_ID=29ac99cdb9cd43ccb118d84c90a9925e + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2643150 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XrTqBlLh/pbuilderrc_TF1E --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XrTqBlLh/b1 --logfile b1/build.log racon_1.5.0-3.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XrTqBlLh/pbuilderrc_AxXW --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XrTqBlLh/b2 --logfile b2/build.log racon_1.5.0-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 27 17:46 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4190141/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 22 13:10 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2643150/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -88,7 +120,7 @@ Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19722 files and directories currently installed.) +(Reading database ... 19892 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -141,41 +173,35 @@ 6) cmake-data [3.28.3-1 (testing)] 7) libarchive13t64 [3.7.2-2 (testing)] 8) libbrotli1 [1.1.0-2+b3 (testing)] -9) libcom-err2 [1.47.0-2+b1 (testing)] -10) libcurl4 [8.5.0-2 (testing)] -11) libexpat1 [2.6.2-1 (testing)] -12) libgnutls30t64 [3.8.5-2 (testing)] -13) libgssapi-krb5-2 [1.20.1-5+b1 (testing)] -14) libhogweed6t64 [3.9.1-2.2 (testing)] -15) libjsoncpp25 [1.9.5-6+b2 (testing)] -16) libk5crypto3 [1.20.1-5+b1 (testing)] -17) libkeyutils1 [1.6.3-3 (testing)] -18) libkrb5-3 [1.20.1-5+b1 (testing)] -19) libkrb5support0 [1.20.1-5+b1 (testing)] -20) libldap-2.5-0 [2.5.13+dfsg-5+b3 (testing)] -21) libnettle8t64 [3.9.1-2.2 (testing)] -22) libnghttp2-14 [1.59.0-1 (testing)] -23) libproc2-0 [2:4.0.4-4 (testing)] -24) libpsl5t64 [0.21.2-1.1 (testing)] -25) librhash0 [1.4.3-3+b1 (testing)] -26) librtmp1 [2.4+20151223.gitfa8646d.1-2+b4 (testing)] -27) libsasl2-2 [2.1.28+dfsg1-4+b1 (testing)] -28) libsasl2-modules-db [2.1.28+dfsg1-4+b1 (testing)] -29) libssh2-1t64 [1.11.0-4.1+b2 (testing)] -30) libssl3t64 [3.2.1-3 (testing)] -31) libuv1 [1.48.0-1 (testing)] -32) procps [2:4.0.4-4 (testing)] +9) libcurl4 [8.5.0-2 (testing)] +10) libexpat1 [2.6.2-1 (testing)] +11) libgnutls30t64 [3.8.5-2 (testing)] +12) libhogweed6t64 [3.9.1-2.2 (testing)] +13) libjsoncpp25 [1.9.5-6+b2 (testing)] +14) libldap-2.5-0 [2.5.13+dfsg-5+b3 (testing)] +15) libnettle8t64 [3.9.1-2.2 (testing)] +16) libnghttp2-14 [1.59.0-1 (testing)] +17) libproc2-0 [2:4.0.4-4 (testing)] +18) libpsl5t64 [0.21.2-1.1 (testing)] +19) librhash0 [1.4.3-3+b1 (testing)] +20) librtmp1 [2.4+20151223.gitfa8646d.1-2+b4 (testing)] +21) libsasl2-2 [2.1.28+dfsg1-4+b1 (testing)] +22) libsasl2-modules-db [2.1.28+dfsg1-4+b1 (testing)] +23) libssh2-1t64 [1.11.0-4.1+b2 (testing)] +24) libssl3t64 [3.2.1-3 (testing)] +25) libuv1 [1.48.0-1 (testing)] +26) procps [2:4.0.4-4 (testing)] The following NEW packages will be installed: - autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libhogweed6t64{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnettle8t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libssl3t64{a} libsub-override-perl{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} + autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcurl4{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgtest-dev{a} libhogweed6t64{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnettle8t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libssl3t64{a} libsub-override-perl{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages will be REMOVED: libgnutls30{a} libhogweed6{a} libnettle8{a} libssl3{a} The following packages are RECOMMENDED but will NOT be installed: - ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget -0 packages upgraded, 71 newly installed, 4 to remove and 0 not upgraded. -Need to get 41.9 MB of archives. After unpacking 142 MB will be used. + ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget +0 packages upgraded, 65 newly installed, 4 to remove and 0 not upgraded. +Need to get 41.3 MB of archives. After unpacking 140 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libnettle8t64 amd64 3.9.1-2.2 [296 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libhogweed6t64 amd64 3.9.1-2.2 [328 kB] @@ -202,97 +228,92 @@ Get: 23 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] -Get: 26 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-5+b1 [33.2 kB] -Get: 27 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.0-2+b1 [20.1 kB] -Get: 28 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-5+b1 [80.0 kB] -Get: 29 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] -Get: 30 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-5+b1 [333 kB] -Get: 31 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-5+b1 [135 kB] -Get: 32 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b1 [19.7 kB] -Get: 33 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b1 [57.0 kB] -Get: 34 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5+b3 [184 kB] -Get: 35 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.59.0-1 [74.3 kB] -Get: 36 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] -Get: 37 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] -Get: 38 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] -Get: 39 http://deb.debian.org/debian trixie/main amd64 libcurl4 amd64 8.5.0-2 [427 kB] -Get: 40 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] -Get: 41 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] -Get: 42 http://deb.debian.org/debian trixie/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] -Get: 43 http://deb.debian.org/debian trixie/main amd64 libuv1 amd64 1.48.0-1 [147 kB] -Get: 44 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.28.3-1 [2128 kB] -Get: 45 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.28.3-1 [10.5 MB] -Get: 46 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] -Get: 47 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] -Get: 48 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] -Get: 49 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] -Get: 50 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] -Get: 51 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] -Get: 52 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] -Get: 53 http://deb.debian.org/debian trixie/main amd64 libelf1 amd64 0.190-1+b1 [176 kB] -Get: 54 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1 [109 kB] -Get: 55 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] -Get: 56 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] -Get: 57 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] -Get: 58 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] -Get: 59 http://deb.debian.org/debian trixie/main amd64 googletest all 1.14.0-1 [512 kB] -Get: 60 http://deb.debian.org/debian trixie/main amd64 libbiosoup-dev all 0.11.0-2 [8000 B] -Get: 61 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3+b1 [919 kB] -Get: 62 http://deb.debian.org/debian trixie/main amd64 libbioparser-dev all 3.1.0-1 [9108 B] -Get: 63 http://deb.debian.org/debian trixie/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.1 [97.7 kB] -Get: 64 http://deb.debian.org/debian trixie/main amd64 libcereal-dev amd64 1.3.2+dfsg-5 [221 kB] -Get: 65 http://deb.debian.org/debian trixie/main amd64 libedlib1 amd64 1.2.7-5 [17.7 kB] -Get: 66 http://deb.debian.org/debian trixie/main amd64 libedlib-dev amd64 1.2.7-5 [22.5 kB] -Get: 67 http://deb.debian.org/debian trixie/main amd64 libgtest-dev amd64 1.14.0-1+b1 [250 kB] -Get: 68 http://deb.debian.org/debian trixie/main amd64 libspoa7.0.0 amd64 4.1.4-1 [70.3 kB] -Get: 69 http://deb.debian.org/debian trixie/main amd64 libspoa-dev amd64 4.1.4-1 [9400 B] -Get: 70 http://deb.debian.org/debian trixie/main amd64 libthread-pool-dev amd64 4.0.0-2 [7312 B] -Get: 71 http://deb.debian.org/debian trixie/main amd64 rampler amd64 2.1.1-1 [21.2 kB] -Fetched 41.9 MB in 8s (5416 kB/s) +Get: 26 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b1 [19.7 kB] +Get: 27 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b1 [57.0 kB] +Get: 28 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5+b3 [184 kB] +Get: 29 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.59.0-1 [74.3 kB] +Get: 30 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] +Get: 31 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] +Get: 32 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] +Get: 33 http://deb.debian.org/debian trixie/main amd64 libcurl4 amd64 8.5.0-2 [427 kB] +Get: 34 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] +Get: 35 http://deb.debian.org/debian trixie/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] +Get: 36 http://deb.debian.org/debian trixie/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] +Get: 37 http://deb.debian.org/debian trixie/main amd64 libuv1 amd64 1.48.0-1 [147 kB] +Get: 38 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.28.3-1 [2128 kB] +Get: 39 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.28.3-1 [10.5 MB] +Get: 40 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] +Get: 41 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-7 [517 kB] +Get: 42 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] +Get: 43 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] +Get: 44 http://deb.debian.org/debian trixie/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] +Get: 45 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] +Get: 46 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] +Get: 47 http://deb.debian.org/debian trixie/main amd64 libelf1 amd64 0.190-1+b1 [176 kB] +Get: 48 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1 [109 kB] +Get: 49 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.21-14+b1 [1301 kB] +Get: 50 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] +Get: 51 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] +Get: 52 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] +Get: 53 http://deb.debian.org/debian trixie/main amd64 googletest all 1.14.0-1 [512 kB] +Get: 54 http://deb.debian.org/debian trixie/main amd64 libbiosoup-dev all 0.11.0-2 [8000 B] +Get: 55 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3+b1 [919 kB] +Get: 56 http://deb.debian.org/debian trixie/main amd64 libbioparser-dev all 3.1.0-1 [9108 B] +Get: 57 http://deb.debian.org/debian trixie/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.1 [97.7 kB] +Get: 58 http://deb.debian.org/debian trixie/main amd64 libcereal-dev amd64 1.3.2+dfsg-5 [221 kB] +Get: 59 http://deb.debian.org/debian trixie/main amd64 libedlib1 amd64 1.2.7-5 [17.7 kB] +Get: 60 http://deb.debian.org/debian trixie/main amd64 libedlib-dev amd64 1.2.7-5 [22.5 kB] +Get: 61 http://deb.debian.org/debian trixie/main amd64 libgtest-dev amd64 1.14.0-1+b1 [250 kB] +Get: 62 http://deb.debian.org/debian trixie/main amd64 libspoa7.0.0 amd64 4.1.4-1 [70.3 kB] +Get: 63 http://deb.debian.org/debian trixie/main amd64 libspoa-dev amd64 4.1.4-1 [9400 B] +Get: 64 http://deb.debian.org/debian trixie/main amd64 libthread-pool-dev amd64 4.0.0-2 [7312 B] +Get: 65 http://deb.debian.org/debian trixie/main amd64 rampler amd64 2.1.1-1 [21.2 kB] +Fetched 41.3 MB in 6s (7487 kB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libnettle8:amd64: dependency problems, but removing anyway as you requested: libhogweed6:amd64 depends on libnettle8. libgnutls30:amd64 depends on libnettle8 (>= 3.9~). -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19722 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19892 files and directories currently installed.) Removing libnettle8:amd64 (3.9.1-2+b1) ... Selecting previously unselected package libnettle8t64:amd64. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19713 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19883 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.9.1-2.2_amd64.deb ... Unpacking libnettle8t64:amd64 (3.9.1-2.2) ... dpkg: libhogweed6:amd64: dependency problems, but removing anyway as you requested: libgnutls30:amd64 depends on libhogweed6 (>= 3.6). -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19722 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19892 files and directories currently installed.) Removing libhogweed6:amd64 (3.9.1-2+b1) ... Selecting previously unselected package libhogweed6t64:amd64. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19715 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19885 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.9.1-2.2_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.9.1-2.2) ... dpkg: libgnutls30:amd64: dependency problems, but removing anyway as you requested: apt depends on libgnutls30 (>= 3.8.1). -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19722 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19892 files and directories currently installed.) Removing libgnutls30:amd64 (3.8.3-1) ... Selecting previously unselected package libgnutls30t64:amd64. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19694 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19864 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.5-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.5-2) ... Setting up libnettle8t64:amd64 (3.9.1-2.2) ... Setting up libhogweed6t64:amd64 (3.9.1-2.2) ... Setting up libgnutls30t64:amd64 (3.8.5-2) ... dpkg: libssl3:amd64: dependency problems, but removing anyway as you requested: + libkrb5-3:amd64 depends on libssl3 (>= 3.0.0). coreutils depends on libssl3 (>= 3.0.0). -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19723 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19893 files and directories currently installed.) Removing libssl3:amd64 (3.1.5-1) ... Selecting previously unselected package libssl3t64:amd64. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19710 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19880 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.1-3_amd64.deb ... Unpacking libssl3t64:amd64 (3.2.1-3) ... Setting up libssl3t64:amd64 (3.2.1-3) ... Selecting previously unselected package libproc2-0:amd64. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19725 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-4) ... Selecting previously unselected package procps. @@ -355,147 +376,128 @@ Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../20-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) ... -Selecting previously unselected package libkrb5support0:amd64. -Preparing to unpack .../21-libkrb5support0_1.20.1-5+b1_amd64.deb ... -Unpacking libkrb5support0:amd64 (1.20.1-5+b1) ... -Selecting previously unselected package libcom-err2:amd64. -Preparing to unpack .../22-libcom-err2_1.47.0-2+b1_amd64.deb ... -Unpacking libcom-err2:amd64 (1.47.0-2+b1) ... -Selecting previously unselected package libk5crypto3:amd64. -Preparing to unpack .../23-libk5crypto3_1.20.1-5+b1_amd64.deb ... -Unpacking libk5crypto3:amd64 (1.20.1-5+b1) ... -Selecting previously unselected package libkeyutils1:amd64. -Preparing to unpack .../24-libkeyutils1_1.6.3-3_amd64.deb ... -Unpacking libkeyutils1:amd64 (1.6.3-3) ... -Selecting previously unselected package libkrb5-3:amd64. -Preparing to unpack .../25-libkrb5-3_1.20.1-5+b1_amd64.deb ... -Unpacking libkrb5-3:amd64 (1.20.1-5+b1) ... -Selecting previously unselected package libgssapi-krb5-2:amd64. -Preparing to unpack .../26-libgssapi-krb5-2_1.20.1-5+b1_amd64.deb ... -Unpacking libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Selecting previously unselected package libsasl2-modules-db:amd64. -Preparing to unpack .../27-libsasl2-modules-db_2.1.28+dfsg1-4+b1_amd64.deb ... +Preparing to unpack .../21-libsasl2-modules-db_2.1.28+dfsg1-4+b1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libsasl2-2:amd64. -Preparing to unpack .../28-libsasl2-2_2.1.28+dfsg1-4+b1_amd64.deb ... +Preparing to unpack .../22-libsasl2-2_2.1.28+dfsg1-4+b1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libldap-2.5-0:amd64. -Preparing to unpack .../29-libldap-2.5-0_2.5.13+dfsg-5+b3_amd64.deb ... +Preparing to unpack .../23-libldap-2.5-0_2.5.13+dfsg-5+b3_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Selecting previously unselected package libnghttp2-14:amd64. -Preparing to unpack .../30-libnghttp2-14_1.59.0-1_amd64.deb ... +Preparing to unpack .../24-libnghttp2-14_1.59.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.59.0-1) ... Selecting previously unselected package libpsl5t64:amd64. -Preparing to unpack .../31-libpsl5t64_0.21.2-1.1_amd64.deb ... +Preparing to unpack .../25-libpsl5t64_0.21.2-1.1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:amd64. -Preparing to unpack .../32-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_amd64.deb ... +Preparing to unpack .../26-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:amd64. -Preparing to unpack .../33-libssh2-1t64_1.11.0-4.1+b2_amd64.deb ... +Preparing to unpack .../27-libssh2-1t64_1.11.0-4.1+b2_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Selecting previously unselected package libcurl4:amd64. -Preparing to unpack .../34-libcurl4_8.5.0-2_amd64.deb ... +Preparing to unpack .../28-libcurl4_8.5.0-2_amd64.deb ... Unpacking libcurl4:amd64 (8.5.0-2) ... Selecting previously unselected package libexpat1:amd64. -Preparing to unpack .../35-libexpat1_2.6.2-1_amd64.deb ... +Preparing to unpack .../29-libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package libjsoncpp25:amd64. -Preparing to unpack .../36-libjsoncpp25_1.9.5-6+b2_amd64.deb ... +Preparing to unpack .../30-libjsoncpp25_1.9.5-6+b2_amd64.deb ... Unpacking libjsoncpp25:amd64 (1.9.5-6+b2) ... Selecting previously unselected package librhash0:amd64. -Preparing to unpack .../37-librhash0_1.4.3-3+b1_amd64.deb ... +Preparing to unpack .../31-librhash0_1.4.3-3+b1_amd64.deb ... Unpacking librhash0:amd64 (1.4.3-3+b1) ... Selecting previously unselected package libuv1:amd64. -Preparing to unpack .../38-libuv1_1.48.0-1_amd64.deb ... +Preparing to unpack .../32-libuv1_1.48.0-1_amd64.deb ... Unpacking libuv1:amd64 (1.48.0-1) ... Selecting previously unselected package cmake-data. -Preparing to unpack .../39-cmake-data_3.28.3-1_all.deb ... +Preparing to unpack .../33-cmake-data_3.28.3-1_all.deb ... Unpacking cmake-data (3.28.3-1) ... Selecting previously unselected package cmake. -Preparing to unpack .../40-cmake_3.28.3-1_amd64.deb ... +Preparing to unpack .../34-cmake_3.28.3-1_amd64.deb ... Unpacking cmake (3.28.3-1) ... Selecting previously unselected package libdebhelper-perl. -Preparing to unpack .../41-libdebhelper-perl_13.15.3_all.deb ... +Preparing to unpack .../35-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. -Preparing to unpack .../42-libtool_2.4.7-7_all.deb ... +Preparing to unpack .../36-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. -Preparing to unpack .../43-dh-autoreconf_20_all.deb ... +Preparing to unpack .../37-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. -Preparing to unpack .../44-libarchive-zip-perl_1.68-1_all.deb ... +Preparing to unpack .../38-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. -Preparing to unpack .../45-libsub-override-perl_0.10-1_all.deb ... +Preparing to unpack .../39-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. -Preparing to unpack .../46-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... +Preparing to unpack .../40-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. -Preparing to unpack .../47-dh-strip-nondeterminism_1.13.1-1_all.deb ... +Preparing to unpack .../41-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. -Preparing to unpack .../48-libelf1_0.190-1+b1_amd64.deb ... +Preparing to unpack .../42-libelf1_0.190-1+b1_amd64.deb ... Unpacking libelf1:amd64 (0.190-1+b1) ... Selecting previously unselected package dwz. -Preparing to unpack .../49-dwz_0.15-1_amd64.deb ... +Preparing to unpack .../43-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. -Preparing to unpack .../50-gettext_0.21-14+b1_amd64.deb ... +Preparing to unpack .../44-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. -Preparing to unpack .../51-intltool-debian_0.35.0+20060710.6_all.deb ... +Preparing to unpack .../45-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. -Preparing to unpack .../52-po-debconf_1.0.21+nmu1_all.deb ... +Preparing to unpack .../46-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. -Preparing to unpack .../53-debhelper_13.15.3_all.deb ... +Preparing to unpack .../47-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package googletest. -Preparing to unpack .../54-googletest_1.14.0-1_all.deb ... +Preparing to unpack .../48-googletest_1.14.0-1_all.deb ... Unpacking googletest (1.14.0-1) ... Selecting previously unselected package libbiosoup-dev. -Preparing to unpack .../55-libbiosoup-dev_0.11.0-2_all.deb ... +Preparing to unpack .../49-libbiosoup-dev_0.11.0-2_all.deb ... Unpacking libbiosoup-dev (0.11.0-2) ... Selecting previously unselected package zlib1g-dev:amd64. -Preparing to unpack .../56-zlib1g-dev_1%3a1.3.dfsg-3+b1_amd64.deb ... +Preparing to unpack .../50-zlib1g-dev_1%3a1.3.dfsg-3+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3+b1) ... Selecting previously unselected package libbioparser-dev. -Preparing to unpack .../57-libbioparser-dev_3.1.0-1_all.deb ... +Preparing to unpack .../51-libbioparser-dev_3.1.0-1_all.deb ... Unpacking libbioparser-dev (3.1.0-1) ... Selecting previously unselected package rapidjson-dev. -Preparing to unpack .../58-rapidjson-dev_1.1.0+dfsg2-7.1_all.deb ... +Preparing to unpack .../52-rapidjson-dev_1.1.0+dfsg2-7.1_all.deb ... Unpacking rapidjson-dev (1.1.0+dfsg2-7.1) ... Selecting previously unselected package libcereal-dev. -Preparing to unpack .../59-libcereal-dev_1.3.2+dfsg-5_amd64.deb ... +Preparing to unpack .../53-libcereal-dev_1.3.2+dfsg-5_amd64.deb ... Unpacking libcereal-dev (1.3.2+dfsg-5) ... Selecting previously unselected package libedlib1:amd64. -Preparing to unpack .../60-libedlib1_1.2.7-5_amd64.deb ... +Preparing to unpack .../54-libedlib1_1.2.7-5_amd64.deb ... Unpacking libedlib1:amd64 (1.2.7-5) ... Selecting previously unselected package libedlib-dev:amd64. -Preparing to unpack .../61-libedlib-dev_1.2.7-5_amd64.deb ... +Preparing to unpack .../55-libedlib-dev_1.2.7-5_amd64.deb ... Unpacking libedlib-dev:amd64 (1.2.7-5) ... Selecting previously unselected package libgtest-dev:amd64. -Preparing to unpack .../62-libgtest-dev_1.14.0-1+b1_amd64.deb ... +Preparing to unpack .../56-libgtest-dev_1.14.0-1+b1_amd64.deb ... Unpacking libgtest-dev:amd64 (1.14.0-1+b1) ... Selecting previously unselected package libspoa7.0.0:amd64. -Preparing to unpack .../63-libspoa7.0.0_4.1.4-1_amd64.deb ... +Preparing to unpack .../57-libspoa7.0.0_4.1.4-1_amd64.deb ... Unpacking libspoa7.0.0:amd64 (4.1.4-1) ... Selecting previously unselected package libspoa-dev:amd64. -Preparing to unpack .../64-libspoa-dev_4.1.4-1_amd64.deb ... +Preparing to unpack .../58-libspoa-dev_4.1.4-1_amd64.deb ... Unpacking libspoa-dev:amd64 (4.1.4-1) ... Selecting previously unselected package libthread-pool-dev. -Preparing to unpack .../65-libthread-pool-dev_4.0.0-2_amd64.deb ... +Preparing to unpack .../59-libthread-pool-dev_4.0.0-2_amd64.deb ... Unpacking libthread-pool-dev (4.0.0-2) ... Selecting previously unselected package rampler. -Preparing to unpack .../66-rampler_2.1.1-1_amd64.deb ... +Preparing to unpack .../60-rampler_2.1.1-1_amd64.deb ... Unpacking rampler (2.1.1-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up libpipeline1:amd64 (1.5.7-2) ... -Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... @@ -507,11 +509,9 @@ Setting up libmagic1:amd64 (1:5.45-2+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... -Setting up libcom-err2:amd64 (1.47.0-2+b1) ... Setting up file (1:5.45-2+b1) ... Setting up googletest (1.14.0-1) ... Setting up rapidjson-dev (1.1.0+dfsg2-7.1) ... -Setting up libkrb5support0:amd64 (1.20.1-5+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Setting up libbiosoup-dev (0.11.0-2) ... Setting up autotools-dev (20220109.1) ... @@ -523,7 +523,6 @@ Setting up libspoa7.0.0:amd64 (4.1.4-1) ... Setting up autopoint (0.21-14) ... Setting up libjsoncpp25:amd64 (1.9.5-6+b2) ... -Setting up libk5crypto3:amd64 (1.20.1-5+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3+b1) ... @@ -535,7 +534,6 @@ Setting up procps (2:4.0.4-4) ... Setting up libsub-override-perl (0.10-1) ... Setting up cmake-data (3.28.3-1) ... -Setting up libkrb5-3:amd64 (1.20.1-5+b1) ... Setting up libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Setting up libelf1:amd64 (0.190-1+b1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... @@ -549,7 +547,6 @@ Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... -Setting up libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Setting up libedlib-dev:amd64 (1.2.7-5) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... @@ -572,7 +569,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes +I: user script /srv/workspace/pbuilder/2643150/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2643150/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable @@ -598,8 +599,8 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (0.9s) --- Generating done (0.0s) +-- Configuring done (4.6s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -613,7 +614,7 @@ sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -628,12 +629,12 @@ [ 10%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o [ 20%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp +[ 30%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp -[ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o -[ 50%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o -[ 50%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp +[ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp +[ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake @@ -650,13 +651,13 @@ cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build +make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 70%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o -[ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp +[ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 @@ -679,119 +680,119 @@ [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError -[ OK ] RaconInitializeTest.PolisherTypeError (8 ms) +[ OK ] RaconInitializeTest.PolisherTypeError (34 ms) [ RUN ] RaconInitializeTest.WindowLengthError -[ OK ] RaconInitializeTest.WindowLengthError (0 ms) +[ OK ] RaconInitializeTest.WindowLengthError (27 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError -[ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) +[ OK ] RaconInitializeTest.SequencesPathExtensionError (20 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError -[ OK ] RaconInitializeTest.OverlapsPathExtensionError (5 ms) +[ OK ] RaconInitializeTest.OverlapsPathExtensionError (211 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError -[ OK ] RaconInitializeTest.TargetPathExtensionError (4 ms) -[----------] 5 tests from RaconInitializeTest (21 ms total) +[ OK ] RaconInitializeTest.TargetPathExtensionError (44 ms) +[----------] 5 tests from RaconInitializeTest (340 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities -[racon::Polisher::initialize] loaded target sequences 0.000485 s -[racon::Polisher::initialize] loaded sequences 0.031044 s -[racon::Polisher::initialize] loaded overlaps 0.000349 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.020107 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.030967 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.042885 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.051151 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.061773 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.071468 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.097805 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.111818 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.121176 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.129375 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.140851 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.150778 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.161581 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.167014 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.174716 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.191036 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.197934 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.206978 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.219376 s [racon::Polisher::initialize] aligning overlaps [====================] 0.229631 s -[racon::Polisher::initialize] transformed data into windows 0.001704 s -[racon::Polisher::polish] generating consensus [=> ] 0.018602 s [racon::Polisher::polish] generating consensus [==> ] 0.033115 s [racon::Polisher::polish] generating consensus [===> ] 0.047159 s [racon::Polisher::polish] generating consensus [====> ] 0.059120 s [racon::Polisher::polish] generating consensus [=====> ] 0.066204 s [racon::Polisher::polish] generating consensus [======> ] 0.074200 s [racon::Polisher::polish] generating consensus [=======> ] 0.081708 s [racon::Polisher::polish] generating consensus [========> ] 0.090449 s [racon::Polisher::polish] generating consensus [=========> ] 0.101529 s [racon::Polisher::polish] generating consensus [==========> ] 0.113751 s [racon::Polisher::polish] generating consensus [===========> ] 0.133836 s [racon::Polisher::polish] generating consensus [============> ] 0.158464 s [racon::Polisher::polish] generating consensus [=============> ] 0.192338 s [racon::Polisher::polish] generating consensus [==============> ] 0.224486 s [racon::Polisher::polish] generating consensus [===============> ] 0.248439 s [racon::Polisher::polish] generating consensus [================> ] 0.266139 s [racon::Polisher::polish] generating consensus [=================> ] 0.291751 s [racon::Polisher::polish] generating consensus [==================> ] 0.305821 s [racon::Polisher::polish] generating consensus [===================>] 0.319987 s [racon::Polisher::polish] generating consensus [====================] 0.398463 s -[racon::Polisher::] total = 0.674370 s -[ OK ] RaconPolishingTest.ConsensusWithQualities (686 ms) +[racon::Polisher::initialize] loaded target sequences 0.009112 s +[racon::Polisher::initialize] loaded sequences 0.431245 s +[racon::Polisher::initialize] loaded overlaps 0.015499 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.191939 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.279959 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.355727 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.423763 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.507974 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.579979 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.723779 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.831650 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.891622 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.935693 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.023912 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.091668 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.172011 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.227741 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.351153 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.559182 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.619136 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.807678 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.931581 s [racon::Polisher::initialize] aligning overlaps [====================] 1.963683 s +[racon::Polisher::initialize] transformed data into windows 0.031732 s +[racon::Polisher::polish] generating consensus [=> ] 0.399964 s [racon::Polisher::polish] generating consensus [==> ] 0.707908 s [racon::Polisher::polish] generating consensus [===> ] 0.963293 s [racon::Polisher::polish] generating consensus [====> ] 1.199636 s [racon::Polisher::polish] generating consensus [=====> ] 1.336413 s [racon::Polisher::polish] generating consensus [======> ] 1.512281 s [racon::Polisher::polish] generating consensus [=======> ] 1.696202 s [racon::Polisher::polish] generating consensus [========> ] 1.996306 s [racon::Polisher::polish] generating consensus [=========> ] 2.276252 s [racon::Polisher::polish] generating consensus [==========> ] 2.312041 s [racon::Polisher::polish] generating consensus [===========> ] 2.488170 s [racon::Polisher::polish] generating consensus [============> ] 3.268062 s [racon::Polisher::polish] generating consensus [=============> ] 4.552228 s [racon::Polisher::polish] generating consensus [==============> ] 4.553056 s [racon::Polisher::polish] generating consensus [===============> ] 4.553871 s [racon::Polisher::polish] generating consensus [================> ] 4.554785 s [racon::Polisher::polish] generating consensus [=================> ] 4.687656 s [racon::Polisher::polish] generating consensus [==================> ] 4.876152 s [racon::Polisher::polish] generating consensus [===================>] 5.059349 s [racon::Polisher::polish] generating consensus [====================] 6.490178 s +[racon::Polisher::] total = 9.109131 s +[ OK ] RaconPolishingTest.ConsensusWithQualities (9328 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities -[racon::Polisher::initialize] loaded target sequences 0.000421 s -[racon::Polisher::initialize] loaded sequences 0.012548 s -[racon::Polisher::initialize] loaded overlaps 0.000275 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.016906 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.026020 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.037996 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.046259 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.056837 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.066429 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.089593 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.101153 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.110599 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.118885 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.130456 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.140397 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.151168 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.156788 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.164231 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.179097 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.184240 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.193062 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.205173 s [racon::Polisher::initialize] aligning overlaps [====================] 0.221182 s -[racon::Polisher::initialize] transformed data into windows 0.000514 s -[racon::Polisher::polish] generating consensus [=> ] 0.020917 s [racon::Polisher::polish] generating consensus [==> ] 0.039461 s [racon::Polisher::polish] generating consensus [===> ] 0.059521 s [racon::Polisher::polish] generating consensus [====> ] 0.075504 s [racon::Polisher::polish] generating consensus [=====> ] 0.085841 s [racon::Polisher::polish] generating consensus [======> ] 0.095540 s [racon::Polisher::polish] generating consensus [=======> ] 0.107752 s [racon::Polisher::polish] generating consensus [========> ] 0.118890 s [racon::Polisher::polish] generating consensus [=========> ] 0.131011 s [racon::Polisher::polish] generating consensus [==========> ] 0.149171 s [racon::Polisher::polish] generating consensus [===========> ] 0.175802 s [racon::Polisher::polish] generating consensus [============> ] 0.205532 s [racon::Polisher::polish] generating consensus [=============> ] 0.248153 s [racon::Polisher::polish] generating consensus [==============> ] 0.284164 s [racon::Polisher::polish] generating consensus [===============> ] 0.316364 s [racon::Polisher::polish] generating consensus [================> ] 0.347418 s [racon::Polisher::polish] generating consensus [=================> ] 0.379002 s [racon::Polisher::polish] generating consensus [==================> ] 0.396612 s [racon::Polisher::polish] generating consensus [===================>] 0.417293 s [racon::Polisher::polish] generating consensus [====================] 0.540701 s -[racon::Polisher::] total = 0.786452 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualities (797 ms) +[racon::Polisher::initialize] loaded target sequences 0.021401 s +[racon::Polisher::initialize] loaded sequences 0.183627 s +[racon::Polisher::initialize] loaded overlaps 0.000820 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.207087 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.374938 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.583018 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.726490 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.890510 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.054359 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.525601 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.738515 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.918751 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.094481 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.323286 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.534915 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.774547 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.866962 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.002547 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.126662 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.218610 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.406449 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.422433 s [racon::Polisher::initialize] aligning overlaps [====================] 3.518470 s +[racon::Polisher::initialize] transformed data into windows 0.006791 s +[racon::Polisher::polish] generating consensus [=> ] 0.394391 s [racon::Polisher::polish] generating consensus [==> ] 0.940466 s [racon::Polisher::polish] generating consensus [===> ] 1.432713 s [racon::Polisher::polish] generating consensus [====> ] 1.740636 s [racon::Polisher::polish] generating consensus [=====> ] 1.964659 s [racon::Polisher::polish] generating consensus [======> ] 2.032942 s [racon::Polisher::polish] generating consensus [=======> ] 2.100595 s [racon::Polisher::polish] generating consensus [========> ] 2.148777 s [racon::Polisher::polish] generating consensus [=========> ] 2.224802 s [racon::Polisher::polish] generating consensus [==========> ] 2.517009 s [racon::Polisher::polish] generating consensus [===========> ] 2.996725 s [racon::Polisher::polish] generating consensus [============> ] 3.880569 s [racon::Polisher::polish] generating consensus [=============> ] 4.464670 s [racon::Polisher::polish] generating consensus [==============> ] 5.228187 s [racon::Polisher::polish] generating consensus [===============> ] 6.564213 s [racon::Polisher::polish] generating consensus [================> ] 7.560761 s [racon::Polisher::polish] generating consensus [=================> ] 8.783709 s [racon::Polisher::polish] generating consensus [==================> ] 9.374919 s [racon::Polisher::polish] generating consensus [===================>] 9.404421 s [racon::Polisher::polish] generating consensus [====================] 10.384361 s +[racon::Polisher::] total = 14.239509 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualities (14440 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments -[racon::Polisher::initialize] loaded target sequences 0.000397 s -[racon::Polisher::initialize] loaded sequences 0.029465 s -[racon::Polisher::initialize] loaded overlaps 0.017401 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.002424 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002526 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002640 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002763 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002832 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002912 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.003033 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.003228 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.003292 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.003353 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.003468 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.003662 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.003745 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.003865 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.003995 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.004161 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.004224 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.004281 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.004358 s [racon::Polisher::initialize] aligning overlaps [====================] 0.004427 s -[racon::Polisher::initialize] transformed data into windows 0.001572 s -[racon::Polisher::polish] generating consensus [=> ] 0.018874 s [racon::Polisher::polish] generating consensus [==> ] 0.045966 s [racon::Polisher::polish] generating consensus [===> ] 0.063900 s [racon::Polisher::polish] generating consensus [====> ] 0.074275 s [racon::Polisher::polish] generating consensus [=====> ] 0.082972 s [racon::Polisher::polish] generating consensus [======> ] 0.090360 s [racon::Polisher::polish] generating consensus [=======> ] 0.098256 s [racon::Polisher::polish] generating consensus [========> ] 0.106772 s [racon::Polisher::polish] generating consensus [=========> ] 0.116462 s [racon::Polisher::polish] generating consensus [==========> ] 0.127995 s [racon::Polisher::polish] generating consensus [===========> ] 0.146807 s [racon::Polisher::polish] generating consensus [============> ] 0.171483 s [racon::Polisher::polish] generating consensus [=============> ] 0.204243 s [racon::Polisher::polish] generating consensus [==============> ] 0.236412 s [racon::Polisher::polish] generating consensus [===============> ] 0.259833 s [racon::Polisher::polish] generating consensus [================> ] 0.276964 s [racon::Polisher::polish] generating consensus [=================> ] 0.300841 s [racon::Polisher::polish] generating consensus [==================> ] 0.315063 s [racon::Polisher::polish] generating consensus [===================>] 0.327121 s [racon::Polisher::polish] generating consensus [====================] 0.388149 s -[racon::Polisher::] total = 0.453509 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (462 ms) +[racon::Polisher::initialize] loaded target sequences 0.013831 s +[racon::Polisher::initialize] loaded sequences 0.287262 s +[racon::Polisher::initialize] loaded overlaps 0.275828 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.019868 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.020092 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.020321 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.020547 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.020777 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.020970 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.031855 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.032094 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.039895 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.040185 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.040393 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.040568 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.040766 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.040956 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.041116 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.051962 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.052228 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.052398 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.052635 s [racon::Polisher::initialize] aligning overlaps [====================] 0.052790 s +[racon::Polisher::initialize] transformed data into windows 0.014810 s +[racon::Polisher::polish] generating consensus [=> ] 0.505858 s [racon::Polisher::polish] generating consensus [==> ] 0.711615 s [racon::Polisher::polish] generating consensus [===> ] 1.104411 s [racon::Polisher::polish] generating consensus [====> ] 1.304461 s [racon::Polisher::polish] generating consensus [=====> ] 1.424519 s [racon::Polisher::polish] generating consensus [======> ] 1.580523 s [racon::Polisher::polish] generating consensus [=======> ] 1.884554 s [racon::Polisher::polish] generating consensus [========> ] 2.024758 s [racon::Polisher::polish] generating consensus [=========> ] 2.204744 s [racon::Polisher::polish] generating consensus [==========> ] 2.704708 s [racon::Polisher::polish] generating consensus [===========> ] 2.956666 s [racon::Polisher::polish] generating consensus [============> ] 3.220602 s [racon::Polisher::polish] generating consensus [=============> ] 3.848647 s [racon::Polisher::polish] generating consensus [==============> ] 4.548836 s [racon::Polisher::polish] generating consensus [===============> ] 4.996702 s [racon::Polisher::polish] generating consensus [================> ] 5.708956 s [racon::Polisher::polish] generating consensus [=================> ] 5.896926 s [racon::Polisher::polish] generating consensus [==================> ] 6.017008 s [racon::Polisher::polish] generating consensus [===================>] 6.132689 s [racon::Polisher::polish] generating consensus [====================] 7.108795 s +[racon::Polisher::] total = 7.877862 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (8036 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments -[racon::Polisher::initialize] loaded target sequences 0.000398 s -[racon::Polisher::initialize] loaded sequences 0.012329 s -[racon::Polisher::initialize] loaded overlaps 0.017033 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.001913 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002019 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002122 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002252 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002345 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002438 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.002508 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.002655 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.002724 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.002821 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.002924 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.003084 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.003223 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.003286 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.003413 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.003579 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.003635 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.003650 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.003742 s [racon::Polisher::initialize] aligning overlaps [====================] 0.003852 s -[racon::Polisher::initialize] transformed data into windows 0.000421 s -[racon::Polisher::polish] generating consensus [=> ] 0.018772 s [racon::Polisher::polish] generating consensus [==> ] 0.052919 s [racon::Polisher::polish] generating consensus [===> ] 0.071606 s [racon::Polisher::polish] generating consensus [====> ] 0.086058 s [racon::Polisher::polish] generating consensus [=====> ] 0.095917 s [racon::Polisher::polish] generating consensus [======> ] 0.105381 s [racon::Polisher::polish] generating consensus [=======> ] 0.115870 s [racon::Polisher::polish] generating consensus [========> ] 0.127641 s [racon::Polisher::polish] generating consensus [=========> ] 0.139452 s [racon::Polisher::polish] generating consensus [==========> ] 0.157324 s [racon::Polisher::polish] generating consensus [===========> ] 0.179229 s [racon::Polisher::polish] generating consensus [============> ] 0.206914 s [racon::Polisher::polish] generating consensus [=============> ] 0.242948 s [racon::Polisher::polish] generating consensus [==============> ] 0.278422 s [racon::Polisher::polish] generating consensus [===============> ] 0.311960 s [racon::Polisher::polish] generating consensus [================> ] 0.340674 s [racon::Polisher::polish] generating consensus [=================> ] 0.369386 s [racon::Polisher::polish] generating consensus [==================> ] 0.387381 s [racon::Polisher::polish] generating consensus [===================>] 0.404831 s [racon::Polisher::polish] generating consensus [====================] 0.489765 s -[racon::Polisher::] total = 0.531502 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (534 ms) +[racon::Polisher::initialize] loaded target sequences 0.021752 s +[racon::Polisher::initialize] loaded sequences 0.107893 s +[racon::Polisher::initialize] loaded overlaps 0.190909 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.040437 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.041230 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.041888 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.042515 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.043314 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.060692 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.061449 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.062118 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.063741 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.064639 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.065446 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.066242 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.067015 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.068045 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.068892 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.076560 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.077386 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.078107 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.078753 s [racon::Polisher::initialize] aligning overlaps [====================] 0.079376 s +[racon::Polisher::initialize] transformed data into windows 0.002978 s +[racon::Polisher::polish] generating consensus [=> ] 0.449533 s [racon::Polisher::polish] generating consensus [==> ] 0.933333 s [racon::Polisher::polish] generating consensus [===> ] 1.445445 s [racon::Polisher::polish] generating consensus [====> ] 1.841396 s [racon::Polisher::polish] generating consensus [=====> ] 2.053258 s [racon::Polisher::polish] generating consensus [======> ] 2.253281 s [racon::Polisher::polish] generating consensus [=======> ] 2.422040 s [racon::Polisher::polish] generating consensus [========> ] 2.657304 s [racon::Polisher::polish] generating consensus [=========> ] 2.993148 s [racon::Polisher::polish] generating consensus [==========> ] 3.401365 s [racon::Polisher::polish] generating consensus [===========> ] 4.233501 s [racon::Polisher::polish] generating consensus [============> ] 4.725528 s [racon::Polisher::polish] generating consensus [=============> ] 5.449242 s [racon::Polisher::polish] generating consensus [==============> ] 6.622090 s [racon::Polisher::polish] generating consensus [===============> ] 7.340897 s [racon::Polisher::polish] generating consensus [================> ] 7.597609 s [racon::Polisher::polish] generating consensus [=================> ] 7.804817 s [racon::Polisher::polish] generating consensus [==================> ] 7.973848 s [racon::Polisher::polish] generating consensus [===================>] 7.997590 s [racon::Polisher::polish] generating consensus [====================] 9.165135 s +[racon::Polisher::] total = 9.614072 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (9703 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow -[racon::Polisher::initialize] loaded target sequences 0.000429 s -[racon::Polisher::initialize] loaded sequences 0.029352 s -[racon::Polisher::initialize] loaded overlaps 0.000308 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.017335 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.026033 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.037791 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.046064 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.056661 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.066249 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.089377 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.100781 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.110063 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.118243 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.129639 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.139529 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.150291 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.155725 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.163010 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.179166 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.184630 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.193484 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.205521 s [racon::Polisher::initialize] aligning overlaps [====================] 0.220194 s -[racon::Polisher::initialize] transformed data into windows 0.001509 s -[racon::Polisher::polish] generating consensus [=> ] 0.058932 s [racon::Polisher::polish] generating consensus [==> ] 0.058952 s [racon::Polisher::polish] generating consensus [===> ] 0.156310 s [racon::Polisher::polish] generating consensus [====> ] 0.156342 s [racon::Polisher::polish] generating consensus [=====> ] 0.182345 s [racon::Polisher::polish] generating consensus [======> ] 0.182364 s [racon::Polisher::polish] generating consensus [=======> ] 0.204813 s [racon::Polisher::polish] generating consensus [========> ] 0.204846 s [racon::Polisher::polish] generating consensus [=========> ] 0.239740 s [racon::Polisher::polish] generating consensus [==========> ] 0.239760 s [racon::Polisher::polish] generating consensus [===========> ] 0.303246 s [racon::Polisher::polish] generating consensus [============> ] 0.303265 s [racon::Polisher::polish] generating consensus [=============> ] 0.425049 s [racon::Polisher::polish] generating consensus [==============> ] 0.425080 s [racon::Polisher::polish] generating consensus [===============> ] 0.497411 s [racon::Polisher::polish] generating consensus [================> ] 0.497526 s [racon::Polisher::polish] generating consensus [=================> ] 0.559749 s [racon::Polisher::polish] generating consensus [==================> ] 0.559766 s [racon::Polisher::polish] generating consensus [===================>] 0.615219 s [racon::Polisher::polish] generating consensus [====================] 0.671855 s -[racon::Polisher::] total = 0.935057 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (964 ms) +[racon::Polisher::initialize] loaded target sequences 0.009464 s +[racon::Polisher::initialize] loaded sequences 0.162840 s +[racon::Polisher::initialize] loaded overlaps 0.006156 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.229680 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.385683 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.578396 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.685596 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.781475 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.885871 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.133413 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.245719 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.341672 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.473535 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.613725 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.910659 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.977593 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.171568 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.342145 s [racon::Polisher::initialize] aligning overlaps [================> ] 2.641508 s [racon::Polisher::initialize] aligning overlaps [=================> ] 2.642107 s [racon::Polisher::initialize] aligning overlaps [==================> ] 2.773619 s [racon::Polisher::initialize] aligning overlaps [===================>] 2.997576 s [racon::Polisher::initialize] aligning overlaps [====================] 3.013575 s +[racon::Polisher::initialize] transformed data into windows 0.015921 s +[racon::Polisher::polish] generating consensus [=> ] 1.535594 s [racon::Polisher::polish] generating consensus [==> ] 1.536180 s [racon::Polisher::polish] generating consensus [===> ] 2.891552 s [racon::Polisher::polish] generating consensus [====> ] 2.892252 s [racon::Polisher::polish] generating consensus [=====> ] 3.731366 s [racon::Polisher::polish] generating consensus [======> ] 3.731980 s [racon::Polisher::polish] generating consensus [=======> ] 4.291346 s [racon::Polisher::polish] generating consensus [========> ] 4.292089 s [racon::Polisher::polish] generating consensus [=========> ] 5.115425 s [racon::Polisher::polish] generating consensus [==========> ] 5.116038 s [racon::Polisher::polish] generating consensus [===========> ] 6.915827 s [racon::Polisher::polish] generating consensus [============> ] 6.916412 s [racon::Polisher::polish] generating consensus [=============> ] 10.352195 s [racon::Polisher::polish] generating consensus [==============> ] 10.353061 s [racon::Polisher::polish] generating consensus [===============> ] 12.175258 s [racon::Polisher::polish] generating consensus [================> ] 12.176246 s [racon::Polisher::polish] generating consensus [=================> ] 14.146828 s [racon::Polisher::polish] generating consensus [==================> ] 14.146945 s [racon::Polisher::polish] generating consensus [===================>] 15.786815 s [racon::Polisher::polish] generating consensus [====================] 17.699326 s +[racon::Polisher::] total = 21.066141 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (21290 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance -[racon::Polisher::initialize] loaded target sequences 0.000392 s -[racon::Polisher::initialize] loaded sequences 0.029365 s -[racon::Polisher::initialize] loaded overlaps 0.000293 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.017310 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.026017 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.037881 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.046169 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.056793 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.066376 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.089613 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.101678 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.113069 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.121239 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.132732 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.144278 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.155070 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.160517 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.167865 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.178842 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.184343 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.193165 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.205325 s [racon::Polisher::initialize] aligning overlaps [====================] 0.220813 s -[racon::Polisher::initialize] transformed data into windows 0.001652 s -[racon::Polisher::polish] generating consensus [=> ] 0.017764 s [racon::Polisher::polish] generating consensus [==> ] 0.031863 s [racon::Polisher::polish] generating consensus [===> ] 0.044940 s [racon::Polisher::polish] generating consensus [====> ] 0.056608 s [racon::Polisher::polish] generating consensus [=====> ] 0.063156 s [racon::Polisher::polish] generating consensus [======> ] 0.070862 s [racon::Polisher::polish] generating consensus [=======> ] 0.078275 s [racon::Polisher::polish] generating consensus [========> ] 0.086719 s [racon::Polisher::polish] generating consensus [=========> ] 0.097270 s [racon::Polisher::polish] generating consensus [==========> ] 0.108808 s [racon::Polisher::polish] generating consensus [===========> ] 0.128419 s [racon::Polisher::polish] generating consensus [============> ] 0.152770 s [racon::Polisher::polish] generating consensus [=============> ] 0.184998 s [racon::Polisher::polish] generating consensus [==============> ] 0.215634 s [racon::Polisher::polish] generating consensus [===============> ] 0.238841 s [racon::Polisher::polish] generating consensus [================> ] 0.254814 s [racon::Polisher::polish] generating consensus [=================> ] 0.277591 s [racon::Polisher::polish] generating consensus [==================> ] 0.291281 s [racon::Polisher::polish] generating consensus [===================>] 0.305371 s [racon::Polisher::polish] generating consensus [====================] 0.378492 s -[racon::Polisher::] total = 0.640742 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (644 ms) +[racon::Polisher::initialize] loaded target sequences 0.024955 s +[racon::Polisher::initialize] loaded sequences 0.259871 s +[racon::Polisher::initialize] loaded overlaps 0.007948 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.239953 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.336513 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.443877 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.607880 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.691773 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.771801 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.000709 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.204046 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.275732 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.384310 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.560243 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.764472 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.844034 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.960734 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.083943 s [racon::Polisher::initialize] aligning overlaps [================> ] 2.301080 s [racon::Polisher::initialize] aligning overlaps [=================> ] 2.352210 s [racon::Polisher::initialize] aligning overlaps [==================> ] 2.484187 s [racon::Polisher::initialize] aligning overlaps [===================>] 2.595799 s [racon::Polisher::initialize] aligning overlaps [====================] 2.689653 s +[racon::Polisher::initialize] transformed data into windows 0.017235 s +[racon::Polisher::polish] generating consensus [=> ] 0.371947 s [racon::Polisher::polish] generating consensus [==> ] 0.672079 s [racon::Polisher::polish] generating consensus [===> ] 0.904009 s [racon::Polisher::polish] generating consensus [====> ] 1.076069 s [racon::Polisher::polish] generating consensus [=====> ] 1.164118 s [racon::Polisher::polish] generating consensus [======> ] 1.251919 s [racon::Polisher::polish] generating consensus [=======> ] 1.363945 s [racon::Polisher::polish] generating consensus [========> ] 1.516123 s [racon::Polisher::polish] generating consensus [=========> ] 1.719921 s [racon::Polisher::polish] generating consensus [==========> ] 2.116303 s [racon::Polisher::polish] generating consensus [===========> ] 2.504737 s [racon::Polisher::polish] generating consensus [============> ] 2.784121 s [racon::Polisher::polish] generating consensus [=============> ] 3.336098 s [racon::Polisher::polish] generating consensus [==============> ] 4.001747 s [racon::Polisher::polish] generating consensus [===============> ] 4.471820 s [racon::Polisher::polish] generating consensus [================> ] 4.841201 s [racon::Polisher::polish] generating consensus [=================> ] 5.292148 s [racon::Polisher::polish] generating consensus [==================> ] 5.536066 s [racon::Polisher::polish] generating consensus [===================>] 5.908247 s [racon::Polisher::polish] generating consensus [====================] 6.309874 s +[racon::Polisher::] total = 9.456669 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (9543 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities -[racon::Polisher::initialize] loaded target sequences 0.029371 s -[racon::Polisher::initialize] loaded sequences 0.029226 s -[racon::Polisher::initialize] loaded overlaps 0.007775 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.018814 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.033335 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.038763 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.048553 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.057276 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.067341 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.083000 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.092391 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.106741 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.118428 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.131191 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.150931 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.164589 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.180532 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.190940 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.207919 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.218334 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.223088 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.235587 s [racon::Polisher::initialize] aligning overlaps [====================] 0.249192 s -[racon::Polisher::initialize] transformed data into windows 0.002945 s -[racon::Polisher::polish] generating consensus [=> ] 0.015932 s [racon::Polisher::polish] generating consensus [==> ] 0.033501 s [racon::Polisher::polish] generating consensus [===> ] 0.050506 s [racon::Polisher::polish] generating consensus [====> ] 0.050800 s [racon::Polisher::polish] generating consensus [=====> ] 0.061259 s [racon::Polisher::polish] generating consensus [======> ] 0.067721 s [racon::Polisher::polish] generating consensus [=======> ] 0.078295 s [racon::Polisher::polish] generating consensus [========> ] 0.080970 s [racon::Polisher::polish] generating consensus [=========> ] 0.100664 s [racon::Polisher::polish] generating consensus [==========> ] 0.110164 s [racon::Polisher::polish] generating consensus [===========> ] 0.118307 s [racon::Polisher::polish] generating consensus [============> ] 0.121541 s [racon::Polisher::polish] generating consensus [=============> ] 0.131074 s [racon::Polisher::polish] generating consensus [==============> ] 0.131352 s [racon::Polisher::polish] generating consensus [===============> ] 0.152998 s [racon::Polisher::polish] generating consensus [================> ] 0.153304 s [racon::Polisher::polish] generating consensus [=================> ] 0.191908 s [racon::Polisher::polish] generating consensus [==================> ] 0.206121 s [racon::Polisher::polish] generating consensus [===================>] 0.219964 s [racon::Polisher::polish] generating consensus [====================] 0.223154 s -[racon::Polisher::] total = 0.542083 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (545 ms) +[racon::Polisher::initialize] loaded target sequences 0.320604 s +[racon::Polisher::initialize] loaded sequences 0.227425 s +[racon::Polisher::initialize] loaded overlaps 0.136666 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.230811 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.486979 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.550852 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.686959 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.803183 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.922926 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.014859 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.106929 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.218951 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.403157 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.586911 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.691207 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.843122 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.003119 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.094908 s [racon::Polisher::initialize] aligning overlaps [================> ] 2.202717 s [racon::Polisher::initialize] aligning overlaps [=================> ] 2.302807 s [racon::Polisher::initialize] aligning overlaps [==================> ] 2.411154 s [racon::Polisher::initialize] aligning overlaps [===================>] 2.547135 s [racon::Polisher::initialize] aligning overlaps [====================] 2.795177 s +[racon::Polisher::initialize] transformed data into windows 0.050759 s +[racon::Polisher::polish] generating consensus [=> ] 0.376371 s [racon::Polisher::polish] generating consensus [==> ] 0.672596 s [racon::Polisher::polish] generating consensus [===> ] 0.944668 s [racon::Polisher::polish] generating consensus [====> ] 0.945799 s [racon::Polisher::polish] generating consensus [=====> ] 1.148573 s [racon::Polisher::polish] generating consensus [======> ] 1.284622 s [racon::Polisher::polish] generating consensus [=======> ] 1.440529 s [racon::Polisher::polish] generating consensus [========> ] 1.488501 s [racon::Polisher::polish] generating consensus [=========> ] 1.948771 s [racon::Polisher::polish] generating consensus [==========> ] 2.144395 s [racon::Polisher::polish] generating consensus [===========> ] 2.316813 s [racon::Polisher::polish] generating consensus [============> ] 2.368580 s [racon::Polisher::polish] generating consensus [=============> ] 2.580519 s [racon::Polisher::polish] generating consensus [==============> ] 2.581702 s [racon::Polisher::polish] generating consensus [===============> ] 2.980373 s [racon::Polisher::polish] generating consensus [================> ] 2.981489 s [racon::Polisher::polish] generating consensus [=================> ] 3.696570 s [racon::Polisher::polish] generating consensus [==================> ] 3.940176 s [racon::Polisher::polish] generating consensus [===================>] 4.112541 s [racon::Polisher::polish] generating consensus [====================] 4.120423 s +[racon::Polisher::] total = 7.661302 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (7779 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.029266 s -[racon::Polisher::initialize] loaded sequences 0.029387 s -[racon::Polisher::initialize] loaded overlaps 0.007608 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.280500 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.465458 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.636122 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.881386 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.095285 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.245555 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.448383 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.708383 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.948649 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.190025 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.376712 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.640847 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.908008 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.155625 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.452525 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.728962 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.961043 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.255764 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.601286 s [racon::Polisher::initialize] aligning overlaps [====================] 4.860268 s -[racon::Polisher::initialize] transformed data into windows 0.043149 s -[racon::Polisher::polish] generating consensus [=> ] 0.807195 s [racon::Polisher::polish] generating consensus [==> ] 1.342686 s [racon::Polisher::polish] generating consensus [===> ] 1.934545 s [racon::Polisher::polish] generating consensus [====> ] 2.386490 s [racon::Polisher::polish] generating consensus [=====> ] 2.892103 s [racon::Polisher::polish] generating consensus [======> ] 3.475907 s [racon::Polisher::polish] generating consensus [=======> ] 4.060546 s [racon::Polisher::polish] generating consensus [========> ] 4.490405 s [racon::Polisher::polish] generating consensus [=========> ] 5.047100 s [racon::Polisher::polish] generating consensus [==========> ] 5.704310 s [racon::Polisher::polish] generating consensus [===========> ] 6.258666 s [racon::Polisher::polish] generating consensus [============> ] 6.842167 s [racon::Polisher::polish] generating consensus [=============> ] 7.347029 s [racon::Polisher::polish] generating consensus [==============> ] 7.895709 s [racon::Polisher::polish] generating consensus [===============> ] 8.485136 s [racon::Polisher::polish] generating consensus [================> ] 8.806394 s [racon::Polisher::polish] generating consensus [=================> ] 9.464088 s [racon::Polisher::polish] generating consensus [==================> ] 10.081349 s [racon::Polisher::polish] generating consensus [===================>] 10.675191 s [racon::Polisher::polish] generating consensus [====================] 11.058716 s -[racon::Polisher::] total = 16.030940 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (16034 ms) +[racon::Polisher::initialize] loaded target sequences 0.183343 s +[racon::Polisher::initialize] loaded sequences 0.204567 s +[racon::Polisher::initialize] loaded overlaps 0.080345 s +[racon::Polisher::initialize] aligning overlaps [=> ] 3.716101 s [racon::Polisher::initialize] aligning overlaps [==> ] 6.010951 s [racon::Polisher::initialize] aligning overlaps [===> ] 8.279009 s [racon::Polisher::initialize] aligning overlaps [====> ] 11.144113 s [racon::Polisher::initialize] aligning overlaps [=====> ] 13.799276 s [racon::Polisher::initialize] aligning overlaps [======> ] 15.587424 s [racon::Polisher::initialize] aligning overlaps [=======> ] 18.253225 s [racon::Polisher::initialize] aligning overlaps [========> ] 21.580286 s [racon::Polisher::initialize] aligning overlaps [=========> ] 24.494924 s [racon::Polisher::initialize] aligning overlaps [==========> ] 28.084970 s [racon::Polisher::initialize] aligning overlaps [===========> ] 31.115292 s [racon::Polisher::initialize] aligning overlaps [============> ] 34.670942 s [racon::Polisher::initialize] aligning overlaps [=============> ] 38.258950 s [racon::Polisher::initialize] aligning overlaps [==============> ] 40.483528 s [racon::Polisher::initialize] aligning overlaps [===============> ] 43.319844 s [racon::Polisher::initialize] aligning overlaps [================> ] 46.100610 s [racon::Polisher::initialize] aligning overlaps [=================> ] 48.827953 s [racon::Polisher::initialize] aligning overlaps [==================> ] 51.823790 s [racon::Polisher::initialize] aligning overlaps [===================>] 55.393138 s [racon::Polisher::initialize] aligning overlaps [====================] 56.374233 s +[racon::Polisher::initialize] transformed data into windows 0.925489 s +[racon::Polisher::polish] generating consensus [=> ] 14.867967 s [racon::Polisher::polish] generating consensus [==> ] 23.604611 s [racon::Polisher::polish] generating consensus [===> ] 38.519807 s [racon::Polisher::polish] generating consensus [====> ] 48.131768 s [racon::Polisher::polish] generating consensus [=====> ] 57.391777 s [racon::Polisher::polish] generating consensus [======> ] 73.150841 s [racon::Polisher::polish] generating consensus [=======> ] 88.039683 s [racon::Polisher::polish] generating consensus [========> ] 98.403097 s [racon::Polisher::polish] generating consensus [=========> ] 109.214765 s [racon::Polisher::polish] generating consensus [==========> ] 122.310733 s [racon::Polisher::polish] generating consensus [===========> ] 133.874773 s [racon::Polisher::polish] generating consensus [============> ] 142.622919 s [racon::Polisher::polish] generating consensus [=============> ] 155.654728 s [racon::Polisher::polish] generating consensus [==============> ] 170.739587 s [racon::Polisher::polish] generating consensus [===============> ] 187.251727 s [racon::Polisher::polish] generating consensus [================> ] 191.190747 s [racon::Polisher::polish] generating consensus [=================> ] 204.071342 s [racon::Polisher::polish] generating consensus [==================> ] 222.247496 s [racon::Polisher::polish] generating consensus [===================>] 230.158929 s [racon::Polisher::polish] generating consensus [====================] 233.260759 s +[racon::Polisher::] total = 291.038842 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (291123 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.012375 s -[racon::Polisher::initialize] loaded sequences 0.012414 s -[racon::Polisher::initialize] loaded overlaps 0.007623 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.283243 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.469110 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.640750 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.884214 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.099155 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.250715 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.454458 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.718167 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.958672 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.199912 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.386110 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.649835 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.916657 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.148135 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.448513 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.739204 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.976910 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.292864 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.613354 s [racon::Polisher::initialize] aligning overlaps [====================] 4.831655 s -[racon::Polisher::initialize] transformed data into windows 0.011666 s -[racon::Polisher::polish] generating consensus [=> ] 0.988448 s [racon::Polisher::polish] generating consensus [==> ] 1.739652 s [racon::Polisher::polish] generating consensus [===> ] 2.474281 s [racon::Polisher::polish] generating consensus [====> ] 3.026847 s [racon::Polisher::polish] generating consensus [=====> ] 3.715517 s [racon::Polisher::polish] generating consensus [======> ] 4.466252 s [racon::Polisher::polish] generating consensus [=======> ] 5.263196 s [racon::Polisher::polish] generating consensus [========> ] 5.840021 s [racon::Polisher::polish] generating consensus [=========> ] 6.598689 s [racon::Polisher::polish] generating consensus [==========> ] 7.475718 s [racon::Polisher::polish] generating consensus [===========> ] 8.216887 s [racon::Polisher::polish] generating consensus [============> ] 9.013140 s [racon::Polisher::polish] generating consensus [=============> ] 9.741152 s [racon::Polisher::polish] generating consensus [==============> ] 10.485518 s [racon::Polisher::polish] generating consensus [===============> ] 11.236326 s [racon::Polisher::polish] generating consensus [================> ] 11.638624 s [racon::Polisher::polish] generating consensus [=================> ] 12.602113 s [racon::Polisher::polish] generating consensus [==================> ] 13.495481 s [racon::Polisher::polish] generating consensus [===================>] 14.304667 s [racon::Polisher::polish] generating consensus [====================] 14.835262 s -[racon::Polisher::] total = 19.712468 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (19715 ms) +[racon::Polisher::initialize] loaded target sequences 0.192133 s +[racon::Polisher::initialize] loaded sequences 0.183366 s +[racon::Polisher::initialize] loaded overlaps 0.140089 s +[racon::Polisher::initialize] aligning overlaps [=> ] 5.235677 s [racon::Polisher::initialize] aligning overlaps [==> ] 8.371896 s [racon::Polisher::initialize] aligning overlaps [===> ] 10.938820 s [racon::Polisher::initialize] aligning overlaps [====> ] 12.642857 s [racon::Polisher::initialize] aligning overlaps [=====> ] 15.042831 s [racon::Polisher::initialize] aligning overlaps [======> ] 18.363540 s [racon::Polisher::initialize] aligning overlaps [=======> ] 21.983626 s [racon::Polisher::initialize] aligning overlaps [========> ] 24.903698 s [racon::Polisher::initialize] aligning overlaps [=========> ] 29.039762 s [racon::Polisher::initialize] aligning overlaps [==========> ] 31.659759 s [racon::Polisher::initialize] aligning overlaps [===========> ] 33.534768 s [racon::Polisher::initialize] aligning overlaps [============> ] 34.630859 s [racon::Polisher::initialize] aligning overlaps [=============> ] 36.594739 s [racon::Polisher::initialize] aligning overlaps [==============> ] 41.084119 s [racon::Polisher::initialize] aligning overlaps [===============> ] 45.005061 s [racon::Polisher::initialize] aligning overlaps [================> ] 49.038939 s [racon::Polisher::initialize] aligning overlaps [=================> ] 52.251665 s [racon::Polisher::initialize] aligning overlaps [==================> ] 55.875953 s [racon::Polisher::initialize] aligning overlaps [===================>] 57.899819 s [racon::Polisher::initialize] aligning overlaps [====================] 60.084269 s +[racon::Polisher::initialize] transformed data into windows 0.119211 s +[racon::Polisher::polish] generating consensus [=> ] 25.923401 s [racon::Polisher::polish] generating consensus [==> ] 48.356062 s [racon::Polisher::polish] generating consensus [===> ] 72.238651 s [racon::Polisher::polish] generating consensus [====> ] 89.787481 s [racon::Polisher::polish] generating consensus [=====> ] 110.530409 s [racon::Polisher::polish] generating consensus [======> ] 130.766478 s [racon::Polisher::polish] generating consensus [=======> ] 152.323566 s [racon::Polisher::polish] generating consensus [========> ] 166.962538 s [racon::Polisher::polish] generating consensus [=========> ] 189.938550 s [racon::Polisher::polish] generating consensus [==========> ] 216.182764 s [racon::Polisher::polish] generating consensus [===========> ] 234.459379 s [racon::Polisher::polish] generating consensus [============> ] 260.350748 s [racon::Polisher::polish] generating consensus [=============> ] 283.898300 s [racon::Polisher::polish] generating consensus [==============> ] 303.863471 s [racon::Polisher::polish] generating consensus [===============> ] 322.571172 s [racon::Polisher::polish] generating consensus [================> ] 325.938452 s [racon::Polisher::polish] generating consensus [=================> ] 342.586759 s [racon::Polisher::polish] generating consensus [==================> ] 359.023515 s [racon::Polisher::polish] generating consensus [===================>] 374.062914 s [racon::Polisher::polish] generating consensus [====================] 377.300791 s +[racon::Polisher::] total = 438.030966 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (438187 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap -[racon::Polisher::initialize] loaded target sequences 0.029415 s -[racon::Polisher::initialize] loaded sequences 0.029233 s -[racon::Polisher::initialize] loaded overlaps 0.007229 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.280387 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.464043 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.636499 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.881840 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.095502 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.245733 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.448461 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.708389 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.949789 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.190782 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.376665 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.640224 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.906830 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.135001 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.432426 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.710811 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.954747 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.232712 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.533235 s [racon::Polisher::initialize] aligning overlaps [====================] 4.768172 s -[racon::Polisher::initialize] transformed data into windows 0.044294 s -[racon::Polisher::polish] generating consensus [=> ] 0.697349 s [racon::Polisher::polish] generating consensus [==> ] 1.219224 s [racon::Polisher::polish] generating consensus [===> ] 1.767484 s [racon::Polisher::polish] generating consensus [====> ] 2.218470 s [racon::Polisher::polish] generating consensus [=====> ] 2.723131 s [racon::Polisher::polish] generating consensus [======> ] 3.304468 s [racon::Polisher::polish] generating consensus [=======> ] 3.888146 s [racon::Polisher::polish] generating consensus [========> ] 4.315349 s [racon::Polisher::polish] generating consensus [=========> ] 4.867575 s [racon::Polisher::polish] generating consensus [==========> ] 5.511262 s [racon::Polisher::polish] generating consensus [===========> ] 6.060635 s [racon::Polisher::polish] generating consensus [============> ] 6.637572 s [racon::Polisher::polish] generating consensus [=============> ] 7.136257 s [racon::Polisher::polish] generating consensus [==============> ] 7.679227 s [racon::Polisher::polish] generating consensus [===============> ] 8.265226 s [racon::Polisher::polish] generating consensus [================> ] 8.584020 s [racon::Polisher::polish] generating consensus [=================> ] 9.237137 s [racon::Polisher::polish] generating consensus [==================> ] 9.850480 s [racon::Polisher::polish] generating consensus [===================>] 10.440710 s [racon::Polisher::polish] generating consensus [====================] 10.885701 s -[racon::Polisher::] total = 15.765685 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (15768 ms) -[----------] 10 tests from RaconPolishingTest (56154 ms total) +[racon::Polisher::initialize] loaded target sequences 0.516341 s +[racon::Polisher::initialize] loaded sequences 0.491521 s +[racon::Polisher::initialize] loaded overlaps 0.171069 s +[racon::Polisher::initialize] aligning overlaps [=> ] 4.548393 s [racon::Polisher::initialize] aligning overlaps [==> ] 7.452357 s [racon::Polisher::initialize] aligning overlaps [===> ] 10.592660 s [racon::Polisher::initialize] aligning overlaps [====> ] 14.387458 s [racon::Polisher::initialize] aligning overlaps [=====> ] 17.269776 s [racon::Polisher::initialize] aligning overlaps [======> ] 21.259468 s [racon::Polisher::initialize] aligning overlaps [=======> ] 25.147411 s [racon::Polisher::initialize] aligning overlaps [========> ] 31.795489 s [racon::Polisher::initialize] aligning overlaps [=========> ] 38.507519 s [racon::Polisher::initialize] aligning overlaps [==========> ] 42.483462 s [racon::Polisher::initialize] aligning overlaps [===========> ] 42.888216 s [racon::Polisher::initialize] aligning overlaps [============> ] 44.660282 s [racon::Polisher::initialize] aligning overlaps [=============> ] 50.184357 s [racon::Polisher::initialize] aligning overlaps [==============> ] 54.167484 s [racon::Polisher::initialize] aligning overlaps [===============> ] 60.017324 s [racon::Polisher::initialize] aligning overlaps [================> ] 64.972350 s [racon::Polisher::initialize] aligning overlaps [=================> ] 68.953736 s [racon::Polisher::initialize] aligning overlaps [==================> ] 73.292610 s [racon::Polisher::initialize] aligning overlaps [===================>] 76.968324 s [racon::Polisher::initialize] aligning overlaps [====================] 77.816943 s +[racon::Polisher::initialize] transformed data into windows 1.038534 s +[racon::Polisher::polish] generating consensus [=> ] 18.907668 s [racon::Polisher::polish] generating consensus [==> ] 29.735913 s [racon::Polisher::polish] generating consensus [===> ] 45.324672 s [racon::Polisher::polish] generating consensus [====> ] 58.227758 s [racon::Polisher::polish] generating consensus [=====> ] 71.974998 s [racon::Polisher::polish] generating consensus [======> ] 85.563088 s [racon::Polisher::polish] generating consensus [=======> ] 102.879343 s [racon::Polisher::polish] generating consensus [========> ] 116.696067 s [racon::Polisher::polish] generating consensus [=========> ] 129.676266 s [racon::Polisher::polish] generating consensus [==========> ] 150.019115 s [racon::Polisher::polish] generating consensus [===========> ] 169.107736 s [racon::Polisher::polish] generating consensus [============> ] 186.035235 s [racon::Polisher::polish] generating consensus [=============> ] 202.090189 s [racon::Polisher::polish] generating consensus [==============> ] 214.284020 s [racon::Polisher::polish] generating consensus [===============> ] 227.499783 s [racon::Polisher::polish] generating consensus [================> ] 236.412167 s [racon::Polisher::polish] generating consensus [=================> ] 249.059983 s [racon::Polisher::polish] generating consensus [==================> ] 254.848296 s [racon::Polisher::polish] generating consensus [===================>] 258.731720 s [racon::Polisher::polish] generating consensus [====================] 260.453939 s +[racon::Polisher::] total = 340.512065 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (340695 ms) +[----------] 10 tests from RaconPolishingTest (1150169 ms total) [----------] Global test environment tear-down -[==========] 15 tests from 2 test suites ran. (56175 ms total) +[==========] 15 tests from 2 test suites ran. (1150510 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -824,8 +825,8 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'racon' in '../racon_1.5.0-3_amd64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_amd64.deb'. +dpkg-deb: building package 'racon' in '../racon_1.5.0-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -833,12 +834,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2643150/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2643150/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4190141 and its subdirectories -I: Current time: Wed May 28 06:47:54 -12 2025 -I: pbuilder-time-stamp: 1748458074 +I: removing directory /srv/workspace/pbuilder/2643150 and its subdirectories +I: Current time: Fri Apr 26 02:54:31 +14 2024 +I: pbuilder-time-stamp: 1714049671