Diff of the two buildlogs: -- --- b1/build.log 2024-11-16 05:32:52.502205735 +0000 +++ b2/build.log 2024-11-16 05:44:53.385291493 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Dec 18 23:53:48 -12 2025 -I: pbuilder-time-stamp: 1766145228 +I: Current time: Sat Nov 16 19:32:55 +14 2024 +I: pbuilder-time-stamp: 1731735175 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -32,52 +32,84 @@ dpkg-source: info: applying numpy_1.24.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2810703/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2015376/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 16 05:33 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2015376/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2015376/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='f93222d9f20e450f9582e6e86376ce9a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2810703' - PS1='# ' - PS2='> ' + INVOCATION_ID=732f20b2fa8c41dc8f4962f1a32a7567 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2015376 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OWT5aB3Q/pbuilderrc_MLy6 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OWT5aB3Q/b1 --logfile b1/build.log python-pbcore_2.1.2+dfsg-9.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OWT5aB3Q/pbuilderrc_uYAx --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OWT5aB3Q/b2 --logfile b2/build.log python-pbcore_2.1.2+dfsg-9.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2810703/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2015376/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -343,7 +375,7 @@ Get: 192 http://deb.debian.org/debian trixie/main amd64 python3-sphinx all 7.4.7-4 [588 kB] Get: 193 http://deb.debian.org/debian trixie/main amd64 python3-uritools all 4.0.3-1 [28.6 kB] Get: 194 http://deb.debian.org/debian trixie/main amd64 python3-xmlschema all 3.4.3-1 [239 kB] -Fetched 89.3 MB in 6s (13.8 MB/s) +Fetched 89.3 MB in 2s (38.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libjs-jquery. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) @@ -982,8 +1014,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Dec 19 11:54:22 UTC 2025. -Universal Time is now: Fri Dec 19 11:54:22 UTC 2025. +Local time is now: Sat Nov 16 05:35:40 UTC 2024. +Universal Time is now: Sat Nov 16 05:35:40 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... @@ -1163,7 +1195,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-pbcore-2.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pbcore_2.1.2+dfsg-9_source.changes +I: user script /srv/workspace/pbuilder/2015376/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2015376/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-pbcore-2.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pbcore_2.1.2+dfsg-9_source.changes dpkg-buildpackage: info: source package python-pbcore dpkg-buildpackage: info: source version 2.1.2+dfsg-9 dpkg-buildpackage: info: source distribution unstable @@ -1260,51 +1296,51 @@ creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore copying pbcore/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore copying pbcore/sequence.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util -copying pbcore/util/statistics.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util -copying pbcore/util/decorators.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util -copying pbcore/util/ToolRunner.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util -copying pbcore/util/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data -copying pbcore/data/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry +copying pbcore/chemistry/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry +copying pbcore/chemistry/chemistry.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io -copying pbcore/io/base.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io -copying pbcore/io/VcfIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io -copying pbcore/io/FastaIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io -copying pbcore/io/FofnIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io -copying pbcore/io/_utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io copying pbcore/io/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io +copying pbcore/io/VcfIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io +copying pbcore/io/GffIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io copying pbcore/io/opener.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io +copying pbcore/io/_utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io +copying pbcore/io/base.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io copying pbcore/io/FastqIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io -copying pbcore/io/GffIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io +copying pbcore/io/FastaIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io +copying pbcore/io/FofnIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/model copying pbcore/model/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/model copying pbcore/model/baseRegions.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/model -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry -copying pbcore/chemistry/chemistry.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry -copying pbcore/chemistry/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets -copying pbcore/data/datasets/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/DataSetMembers.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/DataSetMetaTypes.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/DataSetReader.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/DataSetValidator.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/DataSetIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/run_split.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/DataSetErrors.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/DataSetWriter.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/DataSetUtils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data +copying pbcore/data/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util +copying pbcore/util/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util +copying pbcore/util/ToolRunner.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util +copying pbcore/util/statistics.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util +copying pbcore/util/decorators.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align +copying pbcore/io/align/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align copying pbcore/io/align/BamAlignment.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align copying pbcore/io/align/_BamSupport.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align -copying pbcore/io/align/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align -copying pbcore/io/align/BamIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align -copying pbcore/io/align/BlasrIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align copying pbcore/io/align/PacBioBamIndex.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align +copying pbcore/io/align/BlasrIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align +copying pbcore/io/align/BamIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align copying pbcore/io/align/_AlignmentMixin.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/DataSetValidator.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/DataSetIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/run_split.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/DataSetMembers.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/DataSetMetaTypes.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/DataSetUtils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/DataSetWriter.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/DataSetReader.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/DataSetErrors.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets +copying pbcore/data/datasets/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets running egg_info creating pbcore.egg-info writing pbcore.egg-info/PKG-INFO @@ -1360,6 +1396,8 @@ !! check.warn(importable) +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/resources +copying pbcore/chemistry/resources/mapping.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/resources copying pbcore/data/Fluidigm_human_amplicons.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/Fluidigm_human_amplicons.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/Fluidigm_human_amplicons_tiny.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data @@ -1389,8 +1427,6 @@ copying pbcore/data/variants.gff -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/weird.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data copying pbcore/data/weird.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/resources -copying pbcore/chemistry/resources/mapping.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/resources copying pbcore/data/datasets/CollectionMetadata.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/alignment.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/barcode.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets @@ -1446,7 +1482,7 @@ WARNING: The pre-Sphinx 1.0 'intersphinx_mapping' format is deprecated and will be removed in Sphinx 8. Update to the current format as described in the documentation. Hint: `intersphinx_mapping = {'': ('http://docs.python.org/', None)}`.https://www.sphinx-doc.org/en/master/usage/extensions/intersphinx.html#confval-intersphinx_mapping loading intersphinx inventory 'main_inventory' from http://docs.python.org/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due to : HTTPConnectionPool(host='docs.python.org', port=80): Max retries exceeded with url: /objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.python.org' ([Errno -3] Temporary failure in name resolution)")) +intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due to : HTTPConnectionPool(host='docs.python.org', port=80): Max retries exceeded with url: /objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.python.org' ([Errno -3] Temporary failure in name resolution)")) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 11 source files that are out of date @@ -1518,273 +1554,273 @@ cachedir: .pytest_cache rootdir: /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build configfile: pytest.ini -plugins: cov-5.0.0, typeguard-4.4.1, xdist-3.6.1 -created: 42/42 workers -42 workers [140 items] +plugins: typeguard-4.4.1, cov-5.0.0, xdist-3.6.1 +created: 20/20 workers +20 workers [140 items] scheduling tests via LoadScopeScheduling -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ -tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str -[gw7] [ 0%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str -tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification -tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties -tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 -[gw20] [ 1%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 -[gw3] [ 2%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ -tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader -[gw19] [ 2%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ -[gw4] [ 3%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ -tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid +[gw4] [ 0%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str tests/test_pbcore_io_BlasrIO.py::test_m4 -[gw15] [ 4%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m4 -tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ +tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs -[gw17] [ 5%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs -[gw7] [ 5%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification -tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 -[gw11] [ 6%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 -tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 -[gw11] [ 7%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse -[gw6] [ 7%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse +tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency +tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties +tests/test_pbdataset_split.py::TestDataSetSplit::test_split +[gw6] [ 1%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ +tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs +tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid +tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations +[gw10] [ 2%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations +tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable +[gw16] [ 2%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m4 +tests/test_pbcore_io_BlasrIO.py::test_m5 +tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 +[gw14] [ 3%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 +tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 +[gw14] [ 4%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 +[gw19] [ 5%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 +tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 +[gw19] [ 5%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 +[gw16] [ 6%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m5 +tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations +[gw5] [ 7%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement -[gw6] [ 8%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement +[gw5] [ 7%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement +[gw8] [ 8%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs +tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted +[gw18] [ 9%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs +tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii +[gw18] [ 10%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement -[gw6] [ 9%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement +[gw5] [ 10%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac -[gw6] [ 10%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac +[gw5] [ 11%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error -[gw23] [ 10%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations +[gw5] [ 12%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations -tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString -[gw7] [ 11%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString -tests/test_pbcore_io_FofnIO.py::test_simple -[gw12] [ 12%] PASSED tests/test_pbcore_io_FofnIO.py::test_simple -tests/test_pbcore_io_FofnIO.py::test_empty_lines -[gw12] [ 12%] PASSED tests/test_pbcore_io_FofnIO.py::test_empty_lines -[gw3] [ 13%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ +tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta +[gw12] [ 12%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta +tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration +[gw7] [ 13%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName +[gw7] [ 14%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById +[gw3] [ 15%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ +[gw3] [ 15%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString -[gw3] [ 14%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString +[gw3] [ 16%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 -[gw3] [ 15%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 -[gw3] [ 15%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len -[gw3] [ 16%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq -tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers -[gw22] [ 17%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers -tests/test_pbdataset_split.py::TestDataSetSplit::test_split -tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs -[gw8] [ 17%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs -tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted -[gw8] [ 18%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted -tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff -[gw8] [ 19%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff -[gw6] [ 20%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error -tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 -[gw18] [ 20%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 -[gw3] [ 21%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq +[gw3] [ 17%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 +[gw12] [ 17%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv -[gw21] [ 22%] PASSED tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv -[gw1] [ 22%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation -[gw1] [ 23%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration -[gw5] [ 24%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName -[gw5] [ 25%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName -[gw4] [ 25%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ +[gw12] [ 18%] PASSED tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv +[gw10] [ 19%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable +tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers +[gw10] [ 20%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers +tests/test_pbcore_io_FofnIO.py::test_simple +[gw17] [ 20%] PASSED tests/test_pbcore_io_FofnIO.py::test_simple +tests/test_pbcore_io_FofnIO.py::test_empty_lines +[gw17] [ 21%] PASSED tests/test_pbcore_io_FofnIO.py::test_empty_lines +[gw16] [ 22%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations +tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 +[gw13] [ 22%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 +tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 +[gw13] [ 23%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ +[gw6] [ 24%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString -[gw4] [ 26%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString +[gw6] [ 25%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 -[gw4] [ 27%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 +[gw6] [ 25%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 -[gw4] [ 27%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len -[gw4] [ 28%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq -[gw4] [ 29%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq -[gw1] [ 30%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead -[gw1] [ 30%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById -[gw5] [ 31%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition -tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta -[gw16] [ 32%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta -[gw10] [ 32%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency -[gw1] [ 33%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal -tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations -tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming -tests/test_pbcore_io_BlasrIO.py::test_m5 -[gw13] [ 34%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations -tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable -tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file -tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 -[gw11] [ 35%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 -[gw4] [ 35%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal -[gw2] [ 36%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations +[gw6] [ 26%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 +tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification +[gw4] [ 27%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification +tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString +[gw4] [ 27%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString +[gw1] [ 28%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations +[gw2] [ 29%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation -[gw2] [ 37%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation +[gw2] [ 30%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName -[gw2] [ 37%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName +[gw2] [ 30%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead -[gw2] [ 38%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead -tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get -[gw7] [ 39%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get -tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii -[gw17] [ 40%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal -[gw3] [ 40%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal -[gw8] [ 41%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file -[gw15] [ 42%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m5 -tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 -[gw20] [ 42%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 -tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support -[gw24] [ 43%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support -[gw1] [ 44%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference +[gw2] [ 31%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead +[gw11] [ 32%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid +tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype +[gw11] [ 32%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype +tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix +[gw11] [ 33%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead +[gw2] [ 34%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference +[gw8] [ 35%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted +tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff +[gw8] [ 35%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff +[gw7] [ 36%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition +[gw7] [ 37%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice +[gw7] [ 37%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation +[gw1] [ 38%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName +[gw1] [ 39%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName +[gw2] [ 40%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead +[gw1] [ 40%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead +[gw1] [ 41%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 +[gw3] [ 42%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len +[gw3] [ 42%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq +[gw3] [ 43%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq +[gw7] [ 44%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta +[gw1] [ 45%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference [gw1] [ 45%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV -[gw1] [ 45%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV +[gw1] [ 46%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript -[gw1] [ 46%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript +[gw1] [ 47%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len +[gw6] [ 47%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq +[gw6] [ 48%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments -[gw1] [ 47%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments -[gw13] [ 47%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable -tests/test_pbcore_io_FofnIO.py::test_absolutifying -[gw12] [ 48%] PASSED tests/test_pbcore_io_FofnIO.py::test_absolutifying -tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ -[gw22] [ 49%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ -tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping -[gw29] [ 50%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping +[gw1] [ 49%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments +[gw2] [ 50%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV +[gw2] [ 50%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange -tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range -[gw27] [ 50%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range -tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties -tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 -[gw32] [ 51%] SKIPPED tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 -tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted -[gw31] [ 52%] PASSED tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted -tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement -tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam -tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta -[gw16] [ 52%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta -[gw30] [ 53%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam -tests/test_dataset_run_split.py::test -[gw25] [ 54%] SKIPPED tests/test_dataset_run_split.py::test -tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error -[gw6] [ 55%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error -[gw5] [ 55%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice -[gw5] [ 56%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta -[gw5] [ 57%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex -[gw5] [ 57%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead -[gw2] [ 58%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference -[gw2] [ 59%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference -tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 -[gw18] [ 60%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 -tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord -[gw19] [ 60%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord -tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd -[gw23] [ 61%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd -[gw10] [ 62%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming +[gw9] [ 51%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency +tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming +[gw9] [ 52%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire -[gw10] [ 62%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire -tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index -[gw10] [ 63%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index -[gw2] [ 64%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV -[gw2] [ 65%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript -[gw2] [ 65%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript +[gw2] [ 52%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments -[gw2] [ 66%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments +tests/test_dataset_run_split.py::test +tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support +tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd +[gw0] [ 53%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split +[gw19] [ 54%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support +tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping +tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement +[gw16] [ 55%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd +[gw9] [ 55%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire +tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error +[gw5] [ 56%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error +tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws +[gw14] [ 57%] SKIPPED tests/test_dataset_run_split.py::test +tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range +[gw14] [ 57%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy -[gw21] [ 67%] PASSED tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy +[gw12] [ 58%] PASSED tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex +[gw7] [ 59%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex +tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ +[gw10] [ 60%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ +tests/test_pbcore_io_FofnIO.py::test_absolutifying +[gw19] [ 60%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping +[gw17] [ 61%] PASSED tests/test_pbcore_io_FofnIO.py::test_absolutifying +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal +[gw3] [ 62%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal +[gw2] [ 62%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange -[gw0] [ 67%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split -[gw9] [ 68%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid -tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype -tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws -[gw9] [ 69%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype -tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix -[gw9] [ 70%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix +tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal +[gw6] [ 63%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal +tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 +[gw13] [ 64%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 +[gw16] [ 65%] PASSED tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted +[gw15] [ 65%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties +tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names +[gw15] [ 66%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names +tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader +[gw15] [ 67%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader +tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get +[gw4] [ 67%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges -[gw9] [ 70%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges -[gw1] [ 71%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange +tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file +[gw11] [ 68%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges +[gw8] [ 69%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file +tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam +[gw19] [ 70%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam +tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord +[gw15] [ 70%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord +tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties +tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index +[gw9] [ 71%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index +[gw0] [ 72%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws +tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize +[gw18] [ 72%] PASSED tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement +tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 +[gw18] [ 73%] SKIPPED tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 +[gw1] [ 74%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable -[gw2] [ 72%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable -[gw1] [ 72%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable +[gw1] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry -[gw2] [ 73%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry -[gw1] [ 74%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry +[gw1] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV -[gw1] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV -[gw2] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion +[gw1] [ 76%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers -[gw2] [ 76%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore -[gw2] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default -[gw0] [ 77%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws -[gw2] [ 78%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default -tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize -[gw2] [ 79%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default -[gw14] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties -[gw28] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties -[gw1] [ 81%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers +[gw1] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers +[gw14] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts -[gw26] [ 82%] PASSED tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement -tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names -[gw14] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names -[gw1] [ 83%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts +[gw1] [ 78%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName -[gw1] [ 84%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName +[gw1] [ 79%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam -[gw1] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam +[gw1] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity -[gw1] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity +[gw1] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed -[gw1] [ 86%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed -[gw0] [ 87%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize +[gw0] [ 81%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws -[gw0] [ 87%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws +[gw0] [ 82%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws -[gw0] [ 88%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws +[gw0] [ 82%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters -[gw0] [ 89%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters +[gw0] [ 83%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters -[gw0] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters +[gw0] [ 84%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split -[gw0] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split +[gw0] [ 85%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references -[gw0] [ 91%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references +[gw0] [ 85%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter -[gw0] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter +[gw0] [ 86%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit -[gw0] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit +[gw0] [ 87%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks +[gw1] [ 87%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed +[gw2] [ 88%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable +[gw2] [ 89%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry +[gw2] [ 90%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion +[gw2] [ 90%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore +[gw2] [ 91%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default +[gw2] [ 92%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default +[gw2] [ 92%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default [gw0] [ 93%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split [gw0] [ 94%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split @@ -1806,11 +1842,11 @@ [gw0] [100%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups =============================== warnings summary =============================== -pbcore/__init__.py:1: 43 warnings +pbcore/__init__.py:1: 21 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -../../../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:3154: 43 warnings +../../../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:3154: 21 warnings /usr/lib/python3/dist-packages/pkg_resources/__init__.py:3154: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('logilab')`. Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages declare_namespace(pkg) @@ -1819,15 +1855,20 @@ /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/FastqIO.py:239: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return (np.clip(a, 0, 93).astype(np.uint8) + 33).tostring().decode("ascii") +tests/test_pbcore_io_AlnFileReaders.py: 28 warnings + /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/BamAlignment.py:583: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. + return r.tostring().decode("ascii") + +tests/test_pbdataset_utils.py: 10 warnings +tests/test_pbdataset_split.py: 249 warnings + /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/utils.py:24: DeprecationWarning: datetime.datetime.utcnow() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.now(datetime.UTC). + time = datetime.datetime.utcnow().strftime("%y%m%d_%H%M%S%f")[:-3] + tests/test_pbcore_io_AlnFileReaders.py: 3 warnings tests/test_pbdataset_split.py: 16 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/PacBioBamIndex.py:159: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) ntId = int(peek("u4", 1)) -tests/test_pbcore_io_AlnFileReaders.py: 28 warnings - /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/BamAlignment.py:583: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. - return r.tostring().decode("ascii") - tests/test_pbcore_io_AlnFileReaders.py: 20 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/BamAlignment.py:368: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return y.tostring().decode("ascii") @@ -1844,11 +1885,6 @@ /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/BamAlignment.py:356: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return _gusfieldTrans[uc].tostring().decode("ascii") -tests/test_pbdataset_split.py: 249 warnings -tests/test_pbdataset_utils.py: 10 warnings - /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/utils.py:24: DeprecationWarning: datetime.datetime.utcnow() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.now(datetime.UTC). - time = datetime.datetime.utcnow().strftime("%y%m%d_%H%M%S%f")[:-3] - tests/test_pbdataset_split.py: 12 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/_BamSupport.py:66: DeprecationWarning: NumPy will stop allowing conversion of out-of-bound Python integers to integer arrays. The conversion of 3379013067 to int32 will fail in the future. For the old behavior, usually: @@ -1882,27 +1918,27 @@ Coverage XML written to file coverage.xml ============================= slowest 20 durations ============================= -0.32s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks -0.26s setup tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties -0.24s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split -0.19s setup tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement -0.19s call tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties -0.18s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize -0.16s call tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange -0.16s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange -0.12s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid -0.12s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws -0.12s call tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split -0.11s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split -0.08s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype -0.06s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed -0.04s call tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency -0.03s call tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows -0.03s setup tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations -0.03s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity -0.02s call tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name -0.02s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers -================ 122 passed, 18 skipped, 578 warnings in 6.17s ================= +1.39s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split +1.24s call tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange +1.11s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks +0.78s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange +0.71s setup tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties +0.54s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize +0.50s setup tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement +0.47s call tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split +0.46s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split +0.45s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws +0.40s call tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties +0.30s call tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency +0.22s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed +0.21s call tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows +0.18s setup tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations +0.16s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers +0.14s call tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name +0.13s setup tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations +0.13s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid +0.12s call tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments +================ 122 passed, 18 skipped, 534 warnings in 20.55s ================ # copy working test data into doc dir as user examples mkdir -p _tmp/usr/share/doc/python3-pbcore cp -a tests _tmp/usr/share/doc/python3-pbcore @@ -2008,222 +2044,222 @@ creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12 creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/.pytest_cache -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/.pytest_cache/README.md -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/.pytest_cache -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/.pytest_cache -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/.pytest_cache -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/.pytest_cache/v -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/coverage.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/nosetests.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/.coverage -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/statistics.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__/ToolRunner.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__/decorators.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__/statistics.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/decorators.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/ToolRunner.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/resources +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/resources/mapping.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/resources +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/chemistry.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/__pycache__/chemistry.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/sequence.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/VcfIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/GffIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/BamAlignment.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/_BamSupport.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/PacBioBamIndex.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/_AlignmentMixin.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/BlasrIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/_BamSupport.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/PacBioBamIndex.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/BamAlignment.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/BamIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/BlasrIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/BamIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/_AlignmentMixin.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/opener.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/_utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/base.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/GffIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/FofnIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/_utils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/base.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/FastaIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/opener.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/FastqIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/VcfIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/FastqIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/FastaIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/FofnIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetValidator.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/run_split.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetMembers.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetWriter.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetValidator.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/run_split.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetReader.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMetaTypes.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMembers.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetUtils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetErrors.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetMetaTypes.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetUtils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetWriter.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetReader.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetErrors.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/model +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/model/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/model +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/model/baseRegions.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/model creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/__pycache__/sequence.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/__pycache__ creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/weird.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/Fluidigm_human_amplicons.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty.ccs.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/blasr-output.m4 -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/weird.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/barcodes-ed65-450.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty2.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/variants.gff -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/Fluidigm_human_amplicons.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/lambdaNEB.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/blasr-output.m5 -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/subread.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/contig.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk1contigs.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/subreadSetWithStats.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.reference.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.referenceset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/reference.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/lambda.referenceset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/alignment.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/subreadSetWithStats.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/CollectionMetadata.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk1contigs.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/fofn.fofn -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreadset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/barcode.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/reference.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.referenceset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/contig.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/ccsread.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/lambda.referenceset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreadset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/barcode.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/alignment.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/lambda.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/subread.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/ccsread.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk0contigs.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.reference.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreadset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreadset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/ccsaligned.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/CollectionMetadata.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty.aligned_subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/chemistry.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/variants.gff -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/weird.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.reference.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/datasets/pbalchemysim0.reference.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/blasr-output.m4 -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/weird.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/blasr-output.m5 -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty.ccs.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/Fluidigm_human_amplicons.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/lambdaNEB.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/Fluidigm_human_amplicons.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/lambdaNEB.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/lambdaNEB.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty.aligned_subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty2.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/barcodes-ed65-450.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/barcodes-ed65-450.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/chemistry.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/Fluidigm_human_amplicons_tiny.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty.ccs.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty2.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty2.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty.aligned_subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/base.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetMembers.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetMetaTypes.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetReader.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetUtils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMetaTypes.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetErrors.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetReader.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMembers.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/run_split.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetValidator.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__pycache__/DataSetWriter.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetValidator.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/run_split.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetErrors.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetWriter.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/dataset/DataSetUtils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/VcfIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/FastaIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/FastqIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/VcfIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/FastaIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/opener.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/base.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/FofnIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/_utils.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__pycache__/GffIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/FofnIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/_utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/PacBioBamIndex.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/BamIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/_BamSupport.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/BlasrIO.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/BamAlignment.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__pycache__/_AlignmentMixin.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/BamAlignment.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/_BamSupport.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/BamIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/BlasrIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/PacBioBamIndex.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/align/_AlignmentMixin.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/opener.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/FastqIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/io/GffIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/model -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/model/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/model -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/model/baseRegions.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/model -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/sequence.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/__pycache__/chemistry.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/chemistry.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/resources -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/chemistry/resources/mapping.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/resources -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/.coverage -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/statistics.py to statistics.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/decorators.py to decorators.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/ToolRunner.py to ToolRunner.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/base.py to base.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetMembers.py to DataSetMembers.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetMetaTypes.py to DataSetMetaTypes.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetReader.py to DataSetReader.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetValidator.py to DataSetValidator.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/utils.py to utils.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetIO.py to DataSetIO.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/run_split.py to run_split.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetErrors.py to DataSetErrors.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetWriter.py to DataSetWriter.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetUtils.py to DataSetUtils.cpython-312.pyc +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty.aligned_subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/data/empty.ccs.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/ToolRunner.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/statistics.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/decorators.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__/decorators.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__/statistics.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/pbcore/util/__pycache__/ToolRunner.cpython-312.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__pycache__ +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/.pytest_cache +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/.pytest_cache +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/.pytest_cache +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/.pytest_cache/v +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/.pytest_cache/README.md -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/.pytest_cache +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/nosetests.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.12_pbcore/build/coverage.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/chemistry.py to chemistry.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/sequence.py to sequence.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/VcfIO.py to VcfIO.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/FastaIO.py to FastaIO.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/FofnIO.py to FofnIO.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/_utils.py to _utils.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/GffIO.py to GffIO.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/BamAlignment.py to BamAlignment.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/_BamSupport.py to _BamSupport.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/BamIO.py to BamIO.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/BlasrIO.py to BlasrIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/PacBioBamIndex.py to PacBioBamIndex.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/BlasrIO.py to BlasrIO.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/BamIO.py to BamIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/align/_AlignmentMixin.py to _AlignmentMixin.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/opener.py to opener.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/_utils.py to _utils.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/base.py to base.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/FastqIO.py to FastqIO.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/GffIO.py to GffIO.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/FastaIO.py to FastaIO.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/FofnIO.py to FofnIO.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetValidator.py to DataSetValidator.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetIO.py to DataSetIO.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/run_split.py to run_split.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetMembers.py to DataSetMembers.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetMetaTypes.py to DataSetMetaTypes.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetUtils.py to DataSetUtils.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetWriter.py to DataSetWriter.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/utils.py to utils.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetReader.py to DataSetReader.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/io/dataset/DataSetErrors.py to DataSetErrors.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/model/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/model/baseRegions.py to baseRegions.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/sequence.py to sequence.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/chemistry.py to chemistry.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/chemistry/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/data/datasets/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/ToolRunner.py to ToolRunner.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/statistics.py to statistics.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore/util/decorators.py to decorators.cpython-312.pyc running install_egg_info Copying pbcore.egg-info to /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.12/dist-packages/pbcore-2.2.0.egg-info Skipping SOURCES.txt @@ -2275,12 +2311,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2015376/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2015376/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2810703 and its subdirectories -I: Current time: Thu Dec 18 23:55:51 -12 2025 -I: pbuilder-time-stamp: 1766145351 +I: removing directory /srv/workspace/pbuilder/2015376 and its subdirectories +I: Current time: Sat Nov 16 19:44:52 +14 2024 +I: pbuilder-time-stamp: 1731735892