Diff of the two buildlogs: -- --- b1/build.log 2024-10-20 20:32:44.145003649 +0000 +++ b2/build.log 2024-10-20 20:47:25.005722744 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Nov 22 14:49:26 -12 2025 -I: pbuilder-time-stamp: 1763866166 +I: Current time: Mon Oct 21 10:32:47 +14 2024 +I: pbuilder-time-stamp: 1729456367 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -33,52 +33,84 @@ dpkg-source: info: applying remove-appdirs.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1663860/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3782300/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 20 20:33 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3782300/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3782300/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='eaf1f2bb1489443f92d80aa1e454e1df' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1663860' - PS1='# ' - PS2='> ' + INVOCATION_ID=a96e70f53b3d4ceda5a2f7294041ab41 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3782300 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5xVkC9Tw/pbuilderrc_dhLK --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5xVkC9Tw/b1 --logfile b1/build.log python-cobra_0.29.1-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5xVkC9Tw/pbuilderrc_eAJu --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5xVkC9Tw/b2 --logfile b2/build.log python-cobra_0.29.1-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1663860/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3782300/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -394,7 +426,7 @@ Get: 222 http://deb.debian.org/debian trixie/main amd64 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get: 223 http://deb.debian.org/debian trixie/main amd64 python3-sbml5 amd64 5.20.2+dfsg-8 [3392 kB] Get: 224 http://deb.debian.org/debian trixie/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] -Fetched 143 MB in 1min 3s (2271 kB/s) +Fetched 143 MB in 10s (14.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19799 files and directories currently installed.) @@ -1116,8 +1148,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Nov 23 02:51:10 UTC 2025. -Universal Time is now: Sun Nov 23 02:51:10 UTC 2025. +Local time is now: Sun Oct 20 20:35:53 UTC 2024. +Universal Time is now: Sun Oct 20 20:35:53 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1339,7 +1371,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-cobra-0.29.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cobra_0.29.1-1_source.changes +I: user script /srv/workspace/pbuilder/3782300/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3782300/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-cobra-0.29.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-cobra_0.29.1-1_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.29.1-1 dpkg-buildpackage: info: source distribution unstable @@ -1375,88 +1411,88 @@ creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra copying src/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra copying src/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util -copying src/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util -copying src/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util -copying src/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util -copying src/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util -copying src/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util -copying src/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data -copying src/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io -copying src/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io -copying src/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io -copying src/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io -copying src/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io -copying src/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io -copying src/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling +copying src/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling +copying src/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling +copying src/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling +copying src/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling +copying src/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling +copying src/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core -copying src/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core -copying src/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core -copying src/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core -copying src/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core -copying src/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core -copying src/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core -copying src/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core -copying src/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core -copying src/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core +copying src/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core +copying src/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core +copying src/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core +copying src/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core +copying src/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core +copying src/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling -copying src/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling -copying src/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling -copying src/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling -copying src/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling -copying src/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling -copying src/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium -copying src/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium -copying src/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium -copying src/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium -copying src/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary -copying src/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary -copying src/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary -copying src/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary -copying src/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary -copying src/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary +copying src/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core +copying src/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core +copying src/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io +copying src/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io +copying src/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io +copying src/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io +copying src/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io +copying src/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io +copying src/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data +copying src/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util +copying src/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util +copying src/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util +copying src/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util +copying src/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util +copying src/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util +copying src/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation -copying src/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation -copying src/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis +copying src/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation +copying src/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary +copying src/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary +copying src/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary +copying src/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary +copying src/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary +copying src/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium +copying src/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium +copying src/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium +copying src/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium +copying src/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web -copying src/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web -copying src/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web -copying src/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web -copying src/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data +copying src/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web +copying src/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web +copying src/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data -copying src/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data -copying src/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data +copying src/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data +copying src/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data +copying src/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build; python3.12 -m pytest tests @@ -1465,7 +1501,7 @@ benchmark: 4.0.0 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/reproducible-path/python-cobra-0.29.1 configfile: tox.ini -plugins: anyio-4.4.0, typeguard-4.3.0, benchmark-4.0.0, mock-3.14.0 +plugins: benchmark-4.0.0, typeguard-4.3.0, anyio-4.4.0, mock-3.14.0 collected 553 items tests/test_core/test_configuration.py ...... [ 1%] @@ -1646,46 +1682,46 @@ -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html --------------------------------------------------------------------------------------------------------------------- benchmark: 31 tests --------------------------------------------------------------------------------------------------------------------- -Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -test_subtract_metabolite_benchmark[gurobi] 3.5302 (1.0) 45.8481 (1.43) 3.7272 (1.00) 0.6784 (1.30) 3.7029 (1.00) 0.0717 (1.0) 11;78 268,296.3108 (1.00) 4953 1 -test_subtract_metabolite_benchmark[cplex] 3.5469 (1.00) 32.1020 (1.0) 3.7154 (1.0) 0.5221 (1.0) 3.6915 (1.0) 0.0771 (1.07) 11;87 269,148.3014 (1.0) 5322 1 -test_subtract_metabolite_benchmark[glpk] 3.5812 (1.01) 37.1169 (1.16) 3.7704 (1.01) 0.5804 (1.11) 3.7441 (1.01) 0.0752 (1.05) 14;69 265,224.1600 (0.99) 5443 1 -test_achr_sample_benchmark 284.4781 (80.58) 511.4169 (15.93) 294.2490 (79.20) 11.2766 (21.60) 290.7170 (78.75) 4.0125 (55.95) 128;182 3,398.4823 (0.01) 1041 1 -test_change_objective_benchmark[optlang-glpk] 322.9759 (91.49) 933.8001 (29.09) 340.8938 (91.75) 27.5165 (52.71) 330.9930 (89.66) 9.0228 (125.82) 393;555 2,933.4649 (0.01) 3479 1 -test_optgp_sample_benchmark 424.2761 (120.19) 635.4032 (19.79) 434.0457 (116.82) 13.5607 (25.97) 429.7181 (116.41) 4.7900 (66.79) 142;200 2,303.9048 (0.01) 1181 1 -test_loopless_benchmark_after 1,467.9951 (415.84) 1,619.9911 (50.46) 1,496.1803 (402.69) 22.2766 (42.67) 1,489.4940 (403.49) 26.3231 (367.07) 58;12 668.3686 (0.00) 296 1 -test_loopless_benchmark_before 6,908.1760 (>1000.0) 7,652.8590 (238.39) 7,034.4352 (>1000.0) 89.4116 (171.26) 7,018.8181 (>1000.0) 72.2225 (>1000.0) 11;5 142.1578 (0.00) 93 1 -test_minimal_medium_mip_benchmark 8,073.8291 (>1000.0) 8,536.4820 (265.92) 8,223.7886 (>1000.0) 98.5146 (188.70) 8,209.9980 (>1000.0) 120.2816 (>1000.0) 19;2 121.5985 (0.00) 67 1 -test_minimal_medium_linear_benchmark 8,310.0752 (>1000.0) 12,155.5352 (378.65) 8,602.5919 (>1000.0) 604.8761 (>1000.0) 8,413.9435 (>1000.0) 224.4089 (>1000.0) 3;8 116.2440 (0.00) 68 1 -test_copy_benchmark[optlang-glpk] 15,442.5618 (>1000.0) 304,980.0571 (>1000.0) 21,172.1973 (>1000.0) 35,763.7916 (>1000.0) 16,683.2681 (>1000.0) 920.3262 (>1000.0) 1;4 47.2318 (0.00) 65 1 -test_deepcopy_benchmark 25,919.8609 (>1000.0) 270,283.1840 (>1000.0) 38,312.0892 (>1000.0) 47,981.1465 (>1000.0) 27,227.0381 (>1000.0) 901.3634 (>1000.0) 2;2 26.1014 (0.00) 37 1 -test_gpr_equality_benchmark 27,209.2931 (>1000.0) 30,582.4140 (952.66) 27,807.6459 (>1000.0) 624.8914 (>1000.0) 27,674.2785 (>1000.0) 462.8140 (>1000.0) 3;1 35.9613 (0.00) 30 1 -test_single_reaction_deletion_benchmark[glpk] 30,574.1171 (>1000.0) 31,496.6650 (981.14) 30,896.6155 (>1000.0) 195.8655 (375.17) 30,863.0520 (>1000.0) 233.5451 (>1000.0) 9;1 32.3660 (0.00) 32 1 -test_add_metabolite_benchmark[gurobi] 66,309.6290 (>1000.0) 67,777.0688 (>1000.0) 67,048.6507 (>1000.0) 431.1665 (825.88) 67,014.2479 (>1000.0) 732.7953 (>1000.0) 5;0 14.9145 (0.00) 16 1 -test_add_metabolite_benchmark[glpk] 66,557.4102 (>1000.0) 68,748.1649 (>1000.0) 67,042.2506 (>1000.0) 607.0485 (>1000.0) 66,824.6356 (>1000.0) 294.3795 (>1000.0) 2;2 14.9160 (0.00) 16 1 -test_add_metabolite_benchmark[cplex] 67,308.9970 (>1000.0) 69,980.1201 (>1000.0) 67,840.9048 (>1000.0) 614.6156 (>1000.0) 67,748.9155 (>1000.0) 414.7091 (>1000.0) 1;1 14.7404 (0.00) 16 1 -test_fastcc_benchmark[glpk] 70,692.9681 (>1000.0) 76,415.9891 (>1000.0) 72,703.1186 (>1000.0) 1,801.5633 (>1000.0) 72,712.2129 (>1000.0) 2,901.9620 (>1000.0) 5;0 13.7546 (0.00) 14 1 -test_optgp_init_benchmark 104,879.3120 (>1000.0) 171,535.5481 (>1000.0) 116,779.0968 (>1000.0) 23,141.6323 (>1000.0) 106,330.7466 (>1000.0) 2,856.0529 (>1000.0) 2;2 8.5632 (0.00) 10 1 -test_achr_init_benchmark 108,939.7641 (>1000.0) 358,874.3829 (>1000.0) 176,183.1726 (>1000.0) 107,569.7367 (>1000.0) 113,302.7009 (>1000.0) 121,076.1095 (>1000.0) 1;0 5.6759 (0.00) 5 1 -test_single_gene_deletion_fba_benchmark[glpk] 139,862.2049 (>1000.0) 174,925.8880 (>1000.0) 149,158.2680 (>1000.0) 13,554.3659 (>1000.0) 142,138.3179 (>1000.0) 16,911.4646 (>1000.0) 1;0 6.7043 (0.00) 7 1 -test_flux_variability_loopless_benchmark[glpk] 164,467.0060 (>1000.0) 186,294.0080 (>1000.0) 173,712.8096 (>1000.0) 9,126.4816 (>1000.0) 172,752.1743 (>1000.0) 14,709.7071 (>1000.0) 2;0 5.7566 (0.00) 6 1 -test_gpr_symbolism_benchmark 177,159.8291 (>1000.0) 182,397.8161 (>1000.0) 179,527.0567 (>1000.0) 2,205.0043 (>1000.0) 179,349.0936 (>1000.0) 3,809.5377 (>1000.0) 2;0 5.5702 (0.00) 6 1 -test_single_gene_deletion_linear_moma_benchmark[glpk] 240,474.5088 (>1000.0) 245,252.7529 (>1000.0) 242,252.9568 (>1000.0) 2,143.6528 (>1000.0) 241,215.1750 (>1000.0) 3,595.8488 (>1000.0) 1;0 4.1279 (0.00) 5 1 -test_double_gene_deletion_benchmark 250,398.2859 (>1000.0) 266,089.6590 (>1000.0) 258,699.7170 (>1000.0) 6,479.4306 (>1000.0) 257,439.8210 (>1000.0) 10,669.7001 (>1000.0) 2;0 3.8655 (0.00) 5 1 -test_copy_benchmark_large_model[optlang-glpk] 356,391.7819 (>1000.0) 755,297.9491 (>1000.0) 511,107.4100 (>1000.0) 206,488.9951 (>1000.0) 365,767.1169 (>1000.0) 368,684.1214 (>1000.0) 2;0 1.9565 (0.00) 5 1 -test_single_gene_deletion_linear_room_benchmark[glpk] 357,140.2750 (>1000.0) 975,071.9320 (>1000.0) 482,215.6914 (>1000.0) 275,519.0653 (>1000.0) 359,533.2319 (>1000.0) 156,681.7510 (>1000.0) 1;1 2.0738 (0.00) 5 1 -test_double_reaction_deletion_benchmark 442,888.3670 (>1000.0) 527,857.9330 (>1000.0) 483,268.0820 (>1000.0) 35,125.0014 (>1000.0) 487,540.8309 (>1000.0) 58,922.7177 (>1000.0) 2;0 2.0692 (0.00) 5 1 -test_flux_variability_benchmark[glpk] 445,950.6490 (>1000.0) 474,145.0800 (>1000.0) 456,665.0478 (>1000.0) 12,282.5952 (>1000.0) 449,675.0960 (>1000.0) 19,336.4427 (>1000.0) 1;0 2.1898 (0.00) 5 1 -test_pfba_benchmark[glpk] 514,273.9040 (>1000.0) 549,286.0379 (>1000.0) 529,635.5554 (>1000.0) 12,992.7662 (>1000.0) 525,962.1709 (>1000.0) 15,414.3640 (>1000.0) 2;0 1.8881 (0.00) 5 1 -test_geometric_fba_benchmark[glpk] 517,428.9988 (>1000.0) 789,128.2232 (>1000.0) 574,293.7934 (>1000.0) 120,145.7132 (>1000.0) 520,227.1279 (>1000.0) 73,869.6788 (>1000.0) 1;1 1.7413 (0.00) 5 1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------------------------------------------- benchmark: 31 tests ------------------------------------------------------------------------------------------------------------------------- +Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations +----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +test_subtract_metabolite_benchmark[glpk] 9.1451 (1.0) 398.0501 (4.22) 10.6113 (1.05) 9.7895 (2.65) 9.6045 (1.01) 1.2524 (1.0) 11;124 94,239.5621 (0.95) 1896 1 +test_subtract_metabolite_benchmark[gurobi] 9.1470 (1.00) 101.7882 (1.08) 10.1135 (1.0) 3.8341 (1.04) 9.5445 (1.0) 1.2886 (1.03) 23;26 98,878.0711 (1.0) 3220 1 +test_subtract_metabolite_benchmark[cplex] 9.2662 (1.01) 94.3420 (1.0) 10.2895 (1.02) 3.6977 (1.0) 9.7201 (1.02) 1.2692 (1.01) 24;30 97,186.6695 (0.98) 3110 1 +test_achr_sample_benchmark 384.0481 (41.99) 2,447.2880 (25.94) 432.2435 (42.74) 147.8890 (40.00) 392.2770 (41.10) 54.3538 (43.40) 20;37 2,313.5110 (0.02) 822 1 +test_change_objective_benchmark[optlang-glpk] 414.9440 (45.37) 10,884.0400 (115.37) 1,115.1742 (110.27) 2,019.6953 (546.21) 456.3201 (47.81) 66.4443 (53.05) 154;167 896.7209 (0.01) 1539 1 +test_optgp_sample_benchmark 557.5919 (60.97) 13,093.2201 (138.78) 1,546.6565 (152.93) 2,701.1228 (730.49) 635.2491 (66.56) 146.4799 (116.96) 11;14 646.5560 (0.01) 109 1 +test_loopless_benchmark_after 1,962.2720 (214.57) 5,322.5139 (56.42) 2,159.6387 (213.54) 436.6110 (118.08) 2,021.5951 (211.81) 77.1292 (61.59) 16;18 463.0404 (0.00) 135 1 +test_minimal_medium_mip_benchmark 11,457.4661 (>1000.0) 17,463.9409 (185.11) 13,123.7950 (>1000.0) 1,554.4006 (420.37) 12,944.8180 (>1000.0) 2,213.6967 (>1000.0) 11;1 76.1975 (0.00) 44 1 +test_minimal_medium_linear_benchmark 12,269.6611 (>1000.0) 18,979.0181 (201.17) 13,855.6906 (>1000.0) 1,548.6176 (418.81) 13,501.0321 (>1000.0) 1,052.6157 (840.48) 7;6 72.1725 (0.00) 40 1 +test_loopless_benchmark_before 19,568.3041 (>1000.0) 62,017.8280 (657.37) 34,887.4392 (>1000.0) 11,182.6032 (>1000.0) 32,146.7521 (>1000.0) 18,033.7729 (>1000.0) 7;0 28.6636 (0.00) 25 1 +test_gpr_equality_benchmark 50,849.9919 (>1000.0) 125,786.7122 (>1000.0) 109,819.2454 (>1000.0) 24,415.5221 (>1000.0) 119,034.8926 (>1000.0) 9,062.3091 (>1000.0) 1;1 9.1059 (0.00) 8 1 +test_single_reaction_deletion_benchmark[glpk] 54,169.7170 (>1000.0) 124,204.2950 (>1000.0) 77,943.9520 (>1000.0) 27,544.9156 (>1000.0) 61,078.9331 (>1000.0) 43,729.6951 (>1000.0) 4;0 12.8297 (0.00) 17 1 +test_deepcopy_benchmark 57,509.3990 (>1000.0) 140,280.9250 (>1000.0) 93,027.2198 (>1000.0) 37,828.0285 (>1000.0) 84,509.5825 (>1000.0) 70,911.8965 (>1000.0) 2;0 10.7495 (0.00) 8 1 +test_copy_benchmark[optlang-glpk] 67,742.7910 (>1000.0) 85,159.9488 (902.67) 76,011.9757 (>1000.0) 5,073.7923 (>1000.0) 75,737.7350 (>1000.0) 7,622.8300 (>1000.0) 5;0 13.1558 (0.00) 15 1 +test_add_metabolite_benchmark[cplex] 150,896.7211 (>1000.0) 184,295.6671 (>1000.0) 163,160.7837 (>1000.0) 14,350.4802 (>1000.0) 155,499.8660 (>1000.0) 22,066.0454 (>1000.0) 1;0 6.1289 (0.00) 5 1 +test_add_metabolite_benchmark[gurobi] 151,309.3440 (>1000.0) 325,921.8500 (>1000.0) 228,290.0059 (>1000.0) 71,779.7194 (>1000.0) 221,094.9361 (>1000.0) 135,403.0637 (>1000.0) 3;0 4.3804 (0.00) 7 1 +test_fastcc_benchmark[glpk] 176,091.9229 (>1000.0) 311,831.6589 (>1000.0) 284,337.6844 (>1000.0) 48,052.7152 (>1000.0) 300,405.3580 (>1000.0) 9,174.6663 (>1000.0) 1;1 3.5169 (0.00) 7 1 +test_achr_init_benchmark 198,594.5681 (>1000.0) 397,572.9030 (>1000.0) 262,104.6679 (>1000.0) 83,242.8157 (>1000.0) 222,916.7111 (>1000.0) 110,301.2361 (>1000.0) 1;0 3.8153 (0.00) 5 1 +test_add_metabolite_benchmark[glpk] 327,594.5699 (>1000.0) 370,205.1369 (>1000.0) 343,822.7819 (>1000.0) 16,154.9975 (>1000.0) 337,571.2619 (>1000.0) 17,178.5485 (>1000.0) 2;0 2.9085 (0.00) 5 1 +test_double_gene_deletion_benchmark 408,914.5770 (>1000.0) 445,362.9449 (>1000.0) 421,108.3000 (>1000.0) 14,257.0582 (>1000.0) 418,437.7370 (>1000.0) 14,400.3983 (>1000.0) 1;0 2.3747 (0.00) 5 1 +test_optgp_init_benchmark 445,728.1770 (>1000.0) 463,898.9719 (>1000.0) 454,481.3954 (>1000.0) 8,695.8158 (>1000.0) 453,704.9020 (>1000.0) 16,937.0038 (>1000.0) 2;0 2.2003 (0.00) 5 1 +test_single_gene_deletion_fba_benchmark[glpk] 761,382.5931 (>1000.0) 1,280,176.9909 (>1000.0) 1,166,283.6491 (>1000.0) 226,476.9621 (>1000.0) 1,263,895.4441 (>1000.0) 134,633.3047 (>1000.0) 1;1 0.8574 (0.00) 5 1 +test_gpr_symbolism_benchmark 809,166.6601 (>1000.0) 822,661.7021 (>1000.0) 816,416.1003 (>1000.0) 5,215.7241 (>1000.0) 815,216.3960 (>1000.0) 7,254.3992 (>1000.0) 2;0 1.2249 (0.00) 5 1 +test_copy_benchmark_large_model[optlang-glpk] 840,761.0699 (>1000.0) 2,811,212.6079 (>1000.0) 1,717,705.2543 (>1000.0) 857,963.3143 (>1000.0) 1,904,483.2629 (>1000.0) 1,478,163.5012 (>1000.0) 3;0 0.5822 (0.00) 5 1 +test_flux_variability_loopless_benchmark[glpk] 887,757.6061 (>1000.0) 983,626.8059 (>1000.0) 938,900.7020 (>1000.0) 35,529.7741 (>1000.0) 940,267.8160 (>1000.0) 45,673.2675 (>1000.0) 2;0 1.0651 (0.00) 5 1 +test_single_gene_deletion_linear_moma_benchmark[glpk] 999,418.8258 (>1000.0) 1,017,514.7990 (>1000.0) 1,006,337.7071 (>1000.0) 6,992.6262 (>1000.0) 1,005,294.3029 (>1000.0) 8,836.6957 (>1000.0) 1;0 0.9937 (0.00) 5 1 +test_geometric_fba_benchmark[glpk] 1,249,686.2889 (>1000.0) 2,119,573.0851 (>1000.0) 1,796,506.8212 (>1000.0) 418,709.9247 (>1000.0) 2,065,362.9659 (>1000.0) 720,124.7906 (>1000.0) 1;0 0.5566 (0.00) 5 1 +test_pfba_benchmark[glpk] 1,297,954.1451 (>1000.0) 2,199,007.3330 (>1000.0) 1,541,814.5261 (>1000.0) 374,677.0819 (>1000.0) 1,366,139.2040 (>1000.0) 336,804.8313 (>1000.0) 1;1 0.6486 (0.00) 5 1 +test_single_gene_deletion_linear_room_benchmark[glpk] 1,455,341.1810 (>1000.0) 1,927,503.1839 (>1000.0) 1,664,201.7225 (>1000.0) 196,970.6974 (>1000.0) 1,605,114.5238 (>1000.0) 326,797.5709 (>1000.0) 2;0 0.6009 (0.00) 5 1 +test_flux_variability_benchmark[glpk] 1,659,606.4561 (>1000.0) 1,882,873.5489 (>1000.0) 1,722,932.5085 (>1000.0) 94,124.9118 (>1000.0) 1,678,367.7021 (>1000.0) 108,913.7867 (>1000.0) 1;0 0.5804 (0.00) 5 1 +test_double_reaction_deletion_benchmark 2,277,037.2599 (>1000.0) 2,795,656.5090 (>1000.0) 2,433,527.1077 (>1000.0) 210,473.5938 (>1000.0) 2,350,924.5559 (>1000.0) 219,514.2368 (>1000.0) 1;0 0.4109 (0.00) 5 1 +----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean -===== 515 passed, 27 skipped, 11 xfailed, 76 warnings in 186.00s (0:03:05) ===== +===== 515 passed, 27 skipped, 11 xfailed, 76 warnings in 448.47s (0:07:28) ===== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1713,238 +1749,238 @@ creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12 creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/.benchmarks creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/context.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/util.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/solver.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/process_pool.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/array.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/__pycache__/exceptions.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__pycache__ -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/mat.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/dict.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/sbml.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/json.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/yaml.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/load.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/sampling.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/achr.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/optgp.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/core.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/reaction.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/object.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/model.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/dictlist.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/formula.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/group.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/species.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/solution.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/dictlist.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/model.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/singleton.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/gene.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/metabolite.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/object.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/configuration.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/singleton.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/group.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/reaction.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/metabolite.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/species.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/optgp.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/sampling.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/achr.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/core.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/annotations.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/load.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/json.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/dict.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/mat.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/sbml.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/yaml.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/__pycache__/exceptions.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__pycache__ +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/solver.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/array.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/context.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/util.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/process_pool.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/modify.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/delete.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/validate.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/model_summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/model_summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/validate.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/modify.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/delete.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/annotations.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/array.py to array.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/process_pool.py to process_pool.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/context.py to context.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/solver.py to solver.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/util.py to util.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/dict.py to dict.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/sbml.py to sbml.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/load.py to load.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/json.py to json.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/yaml.py to yaml.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/mat.py to mat.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/group.py to group.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/dictlist.py to dictlist.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/configuration.py to configuration.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/species.py to species.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/metabolite.py to metabolite.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/formula.py to formula.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/model.py to model.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/solution.py to solution.cpython-312.pyc +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/.benchmarks +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/room.py to room.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/sampling.py to sampling.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/core.py to core.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/achr.py to achr.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/optgp.py to optgp.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/gene.py to gene.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/singleton.py to singleton.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/reaction.py to reaction.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/model.py to model.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/dictlist.py to dictlist.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/solution.py to solution.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/formula.py to formula.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/configuration.py to configuration.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/metabolite.py to metabolite.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/object.py to object.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/sampling.py to sampling.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/achr.py to achr.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/optgp.py to optgp.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/core.py to core.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/annotations.py to annotations.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/summary.py to summary.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/delete.py to delete.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/group.py to group.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/species.py to species.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/reaction.py to reaction.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/json.py to json.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/yaml.py to yaml.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/mat.py to mat.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/load.py to load.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/sbml.py to sbml.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/dict.py to dict.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/array.py to array.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/solver.py to solver.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/util.py to util.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/context.py to context.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/process_pool.py to process_pool.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/validate.py to validate.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/modify.py to modify.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/delete.py to delete.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/summary.py to summary.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/annotations.py to annotations.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/exceptions.py to exceptions.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/room.py to room.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-312.pyc running install_egg_info running egg_info creating src/cobra.egg-info @@ -1996,12 +2032,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3782300/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3782300/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1663860 and its subdirectories -I: Current time: Sat Nov 22 14:55:43 -12 2025 -I: pbuilder-time-stamp: 1763866543 +I: removing directory /srv/workspace/pbuilder/3782300 and its subdirectories +I: Current time: Mon Oct 21 10:47:24 +14 2024 +I: pbuilder-time-stamp: 1729457244