Diff of the two buildlogs: -- --- b1/build.log 2024-11-29 12:24:24.245286164 +0000 +++ b2/build.log 2024-11-29 12:31:17.426607546 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Nov 29 00:14:26 -12 2024 -I: pbuilder-time-stamp: 1732882466 +I: Current time: Fri Jan 2 08:47:26 +14 2026 +I: pbuilder-time-stamp: 1767293246 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying vendor_more_click.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3370675/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2436594/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 1 18:47 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2436594/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2436594/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='e30d3c65f3264774bce057e8b3b77c22' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3370675' - PS1='# ' - PS2='> ' + INVOCATION_ID=7787649661f04ffbadb98babfc3faba9 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2436594 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HACLYk4N/pbuilderrc_uT4K --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HACLYk4N/b1 --logfile b1/build.log python-bioregistry_0.11.12-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HACLYk4N/pbuilderrc_QEpX --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HACLYk4N/b2 --logfile b2/build.log python-bioregistry_0.11.12-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3370675/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2436594/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -288,7 +320,7 @@ Get: 132 http://deb.debian.org/debian trixie/main amd64 python3-rdflib-endpoint all 0.5.1-2 [14.2 kB] Get: 133 http://deb.debian.org/debian trixie/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 134 http://deb.debian.org/debian trixie/main amd64 python3-yaml amd64 6.0.2-1+b1 [178 kB] -Fetched 57.3 MB in 1s (48.5 MB/s) +Fetched 57.3 MB in 1s (100 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) @@ -726,8 +758,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Nov 29 12:15:18 UTC 2024. -Universal Time is now: Fri Nov 29 12:15:18 UTC 2024. +Local time is now: Thu Jan 1 18:48:11 UTC 2026. +Universal Time is now: Thu Jan 1 18:48:11 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -862,7 +894,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-bioregistry-0.11.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bioregistry_0.11.12-3_source.changes +I: user script /srv/workspace/pbuilder/2436594/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2436594/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-bioregistry-0.11.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-bioregistry_0.11.12-3_source.changes dpkg-buildpackage: info: source package python-bioregistry dpkg-buildpackage: info: source version 0.11.12-3 dpkg-buildpackage: info: source distribution unstable @@ -890,169 +926,169 @@ creating build creating build/lib creating build/lib/bioregistry -copying src/bioregistry/uri_format.py -> build/lib/bioregistry -copying src/bioregistry/constants.py -> build/lib/bioregistry -copying src/bioregistry/upload_ndex.py -> build/lib/bioregistry copying src/bioregistry/resolve.py -> build/lib/bioregistry -copying src/bioregistry/bibliometrics.py -> build/lib/bioregistry -copying src/bioregistry/version.py -> build/lib/bioregistry -copying src/bioregistry/__init__.py -> build/lib/bioregistry copying src/bioregistry/resource_manager.py -> build/lib/bioregistry -copying src/bioregistry/collection_api.py -> build/lib/bioregistry copying src/bioregistry/schema_utils.py -> build/lib/bioregistry -copying src/bioregistry/pandas.py -> build/lib/bioregistry +copying src/bioregistry/bibliometrics.py -> build/lib/bioregistry +copying src/bioregistry/upload_ndex.py -> build/lib/bioregistry +copying src/bioregistry/uri_format.py -> build/lib/bioregistry +copying src/bioregistry/parse_version_iri.py -> build/lib/bioregistry copying src/bioregistry/license_standardizer.py -> build/lib/bioregistry -copying src/bioregistry/compare.py -> build/lib/bioregistry +copying src/bioregistry/version.py -> build/lib/bioregistry copying src/bioregistry/parse_iri.py -> build/lib/bioregistry -copying src/bioregistry/summary.py -> build/lib/bioregistry -copying src/bioregistry/__main__.py -> build/lib/bioregistry -copying src/bioregistry/parse_version_iri.py -> build/lib/bioregistry -copying src/bioregistry/resolve_identifier.py -> build/lib/bioregistry -copying src/bioregistry/cli.py -> build/lib/bioregistry copying src/bioregistry/lint.py -> build/lib/bioregistry -copying src/bioregistry/utils.py -> build/lib/bioregistry +copying src/bioregistry/summary.py -> build/lib/bioregistry copying src/bioregistry/record_accumulator.py -> build/lib/bioregistry +copying src/bioregistry/__init__.py -> build/lib/bioregistry +copying src/bioregistry/utils.py -> build/lib/bioregistry copying src/bioregistry/metaresource_api.py -> build/lib/bioregistry -creating build/lib/bioregistry/benchmarks -copying src/bioregistry/benchmarks/curie_parsing.py -> build/lib/bioregistry/benchmarks -copying src/bioregistry/benchmarks/__init__.py -> build/lib/bioregistry/benchmarks -copying src/bioregistry/benchmarks/uri_parsing.py -> build/lib/bioregistry/benchmarks -copying src/bioregistry/benchmarks/curie_validation.py -> build/lib/bioregistry/benchmarks -copying src/bioregistry/benchmarks/__main__.py -> build/lib/bioregistry/benchmarks -copying src/bioregistry/benchmarks/cli.py -> build/lib/bioregistry/benchmarks -creating build/lib/bioregistry/export -copying src/bioregistry/export/prefix_maps.py -> build/lib/bioregistry/export -copying src/bioregistry/export/sssom_export.py -> build/lib/bioregistry/export -copying src/bioregistry/export/rdf_export.py -> build/lib/bioregistry/export -copying src/bioregistry/export/warnings_export.py -> build/lib/bioregistry/export -copying src/bioregistry/export/schema_export.py -> build/lib/bioregistry/export -copying src/bioregistry/export/yaml_export.py -> build/lib/bioregistry/export -copying src/bioregistry/export/__init__.py -> build/lib/bioregistry/export -copying src/bioregistry/export/tsv_export.py -> build/lib/bioregistry/export -copying src/bioregistry/export/tables_export.py -> build/lib/bioregistry/export -copying src/bioregistry/export/__main__.py -> build/lib/bioregistry/export -copying src/bioregistry/export/cli.py -> build/lib/bioregistry/export -copying src/bioregistry/export/prefixcc.py -> build/lib/bioregistry/export +copying src/bioregistry/constants.py -> build/lib/bioregistry +copying src/bioregistry/pandas.py -> build/lib/bioregistry +copying src/bioregistry/compare.py -> build/lib/bioregistry +copying src/bioregistry/cli.py -> build/lib/bioregistry +copying src/bioregistry/collection_api.py -> build/lib/bioregistry +copying src/bioregistry/resolve_identifier.py -> build/lib/bioregistry +copying src/bioregistry/__main__.py -> build/lib/bioregistry creating build/lib/bioregistry/gh -copying src/bioregistry/gh/new_prefix.py -> build/lib/bioregistry/gh -copying src/bioregistry/gh/__init__.py -> build/lib/bioregistry/gh copying src/bioregistry/gh/github_client.py -> build/lib/bioregistry/gh +copying src/bioregistry/gh/__init__.py -> build/lib/bioregistry/gh +copying src/bioregistry/gh/new_prefix.py -> build/lib/bioregistry/gh creating build/lib/bioregistry/health +copying src/bioregistry/health/check_homepages.py -> build/lib/bioregistry/health copying src/bioregistry/health/check_providers.py -> build/lib/bioregistry/health copying src/bioregistry/health/__init__.py -> build/lib/bioregistry/health -copying src/bioregistry/health/check_homepages.py -> build/lib/bioregistry/health -copying src/bioregistry/health/__main__.py -> build/lib/bioregistry/health copying src/bioregistry/health/cli.py -> build/lib/bioregistry/health +copying src/bioregistry/health/__main__.py -> build/lib/bioregistry/health +creating build/lib/bioregistry/export +copying src/bioregistry/export/warnings_export.py -> build/lib/bioregistry/export +copying src/bioregistry/export/sssom_export.py -> build/lib/bioregistry/export +copying src/bioregistry/export/yaml_export.py -> build/lib/bioregistry/export +copying src/bioregistry/export/prefixcc.py -> build/lib/bioregistry/export +copying src/bioregistry/export/schema_export.py -> build/lib/bioregistry/export +copying src/bioregistry/export/tables_export.py -> build/lib/bioregistry/export +copying src/bioregistry/export/tsv_export.py -> build/lib/bioregistry/export +copying src/bioregistry/export/__init__.py -> build/lib/bioregistry/export +copying src/bioregistry/export/prefix_maps.py -> build/lib/bioregistry/export +copying src/bioregistry/export/cli.py -> build/lib/bioregistry/export +copying src/bioregistry/export/__main__.py -> build/lib/bioregistry/export +copying src/bioregistry/export/rdf_export.py -> build/lib/bioregistry/export +creating build/lib/bioregistry/curation +copying src/bioregistry/curation/rename_metaprefix.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/add_co_providers.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/enrich_publications.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/deprecation_diff.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/add_examples.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/review_pc.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/add_descriptions_from_gs.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/suggest_uniprot_providers.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/bulk_import.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/map_bartoc_via_wikidata.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/__init__.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/clean_licenses.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/cleanup_authors.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/make_description_curation_sheet.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/clean_publications.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/add_examples_from_ols.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/suggest_author_curation.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/fix_obo_purls.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/add_ontology_regexes.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/map_re3data_via_fairsharing.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/import_pc_semiautomatic.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/make_health_report_curation_sheet.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/add_examples_from_javert.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/clean_name_suffixes.py -> build/lib/bioregistry/curation +creating build/lib/bioregistry/analysis +copying src/bioregistry/analysis/bioregistry_diff.py -> build/lib/bioregistry/analysis +copying src/bioregistry/analysis/__init__.py -> build/lib/bioregistry/analysis +copying src/bioregistry/analysis/paper_ranking.py -> build/lib/bioregistry/analysis +creating build/lib/bioregistry/app +copying src/bioregistry/app/wsgi.py -> build/lib/bioregistry/app +copying src/bioregistry/app/proxies.py -> build/lib/bioregistry/app +copying src/bioregistry/app/ui.py -> build/lib/bioregistry/app +copying src/bioregistry/app/__init__.py -> build/lib/bioregistry/app +copying src/bioregistry/app/utils.py -> build/lib/bioregistry/app +copying src/bioregistry/app/test.py -> build/lib/bioregistry/app +copying src/bioregistry/app/constants.py -> build/lib/bioregistry/app +copying src/bioregistry/app/impl.py -> build/lib/bioregistry/app +copying src/bioregistry/app/cli.py -> build/lib/bioregistry/app +copying src/bioregistry/app/api.py -> build/lib/bioregistry/app creating build/lib/bioregistry/schema -copying src/bioregistry/schema/constants.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/__init__.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/struct.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/utils.py -> build/lib/bioregistry/schema +copying src/bioregistry/schema/constants.py -> build/lib/bioregistry/schema creating build/lib/bioregistry/external copying src/bioregistry/external/alignment_utils.py -> build/lib/bioregistry/external copying src/bioregistry/external/align.py -> build/lib/bioregistry/external copying src/bioregistry/external/__init__.py -> build/lib/bioregistry/external -creating build/lib/bioregistry/analysis -copying src/bioregistry/analysis/paper_ranking.py -> build/lib/bioregistry/analysis -copying src/bioregistry/analysis/__init__.py -> build/lib/bioregistry/analysis -copying src/bioregistry/analysis/bioregistry_diff.py -> build/lib/bioregistry/analysis +creating build/lib/bioregistry/benchmarks +copying src/bioregistry/benchmarks/curie_parsing.py -> build/lib/bioregistry/benchmarks +copying src/bioregistry/benchmarks/__init__.py -> build/lib/bioregistry/benchmarks +copying src/bioregistry/benchmarks/uri_parsing.py -> build/lib/bioregistry/benchmarks +copying src/bioregistry/benchmarks/curie_validation.py -> build/lib/bioregistry/benchmarks +copying src/bioregistry/benchmarks/cli.py -> build/lib/bioregistry/benchmarks +copying src/bioregistry/benchmarks/__main__.py -> build/lib/bioregistry/benchmarks creating build/lib/bioregistry/data copying src/bioregistry/data/__init__.py -> build/lib/bioregistry/data -creating build/lib/bioregistry/app -copying src/bioregistry/app/constants.py -> build/lib/bioregistry/app -copying src/bioregistry/app/wsgi.py -> build/lib/bioregistry/app -copying src/bioregistry/app/proxies.py -> build/lib/bioregistry/app -copying src/bioregistry/app/__init__.py -> build/lib/bioregistry/app -copying src/bioregistry/app/api.py -> build/lib/bioregistry/app -copying src/bioregistry/app/test.py -> build/lib/bioregistry/app -copying src/bioregistry/app/impl.py -> build/lib/bioregistry/app -copying src/bioregistry/app/cli.py -> build/lib/bioregistry/app -copying src/bioregistry/app/utils.py -> build/lib/bioregistry/app -copying src/bioregistry/app/ui.py -> build/lib/bioregistry/app -creating build/lib/bioregistry/curation -copying src/bioregistry/curation/deprecation_diff.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/fix_obo_purls.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/add_examples.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/clean_name_suffixes.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/make_description_curation_sheet.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/rename_metaprefix.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/suggest_uniprot_providers.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/add_ontology_regexes.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/clean_licenses.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/cleanup_authors.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/__init__.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/add_examples_from_ols.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/review_pc.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/add_descriptions_from_gs.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/clean_publications.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/make_health_report_curation_sheet.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/enrich_publications.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/add_examples_from_javert.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/import_pc_semiautomatic.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/bulk_import.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/map_bartoc_via_wikidata.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/suggest_author_curation.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/map_re3data_via_fairsharing.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/add_co_providers.py -> build/lib/bioregistry/curation -creating build/lib/bioregistry/external/integbio -copying src/bioregistry/external/integbio/__init__.py -> build/lib/bioregistry/external/integbio -creating build/lib/bioregistry/external/biocontext -copying src/bioregistry/external/biocontext/__init__.py -> build/lib/bioregistry/external/biocontext -creating build/lib/bioregistry/external/aberowl -copying src/bioregistry/external/aberowl/__init__.py -> build/lib/bioregistry/external/aberowl -creating build/lib/bioregistry/external/rrid -copying src/bioregistry/external/rrid/__init__.py -> build/lib/bioregistry/external/rrid -creating build/lib/bioregistry/external/prefixcommons -copying src/bioregistry/external/prefixcommons/__init__.py -> build/lib/bioregistry/external/prefixcommons -creating build/lib/bioregistry/external/bartoc -copying src/bioregistry/external/bartoc/__init__.py -> build/lib/bioregistry/external/bartoc -creating build/lib/bioregistry/external/edam -copying src/bioregistry/external/edam/__init__.py -> build/lib/bioregistry/external/edam -creating build/lib/bioregistry/external/hl7 -copying src/bioregistry/external/hl7/__init__.py -> build/lib/bioregistry/external/hl7 creating build/lib/bioregistry/external/bioportal -copying src/bioregistry/external/bioportal/ecoportal.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/agroportal.py -> build/lib/bioregistry/external/bioportal +copying src/bioregistry/external/bioportal/ecoportal.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/__init__.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/bioportal.py -> build/lib/bioregistry/external/bioportal -creating build/lib/bioregistry/external/wikidata -copying src/bioregistry/external/wikidata/__init__.py -> build/lib/bioregistry/external/wikidata -creating build/lib/bioregistry/external/uniprot -copying src/bioregistry/external/uniprot/__init__.py -> build/lib/bioregistry/external/uniprot -creating build/lib/bioregistry/external/n2t -copying src/bioregistry/external/n2t/__init__.py -> build/lib/bioregistry/external/n2t -creating build/lib/bioregistry/external/zazuko -copying src/bioregistry/external/zazuko/__init__.py -> build/lib/bioregistry/external/zazuko -creating build/lib/bioregistry/external/obofoundry -copying src/bioregistry/external/obofoundry/__init__.py -> build/lib/bioregistry/external/obofoundry +creating build/lib/bioregistry/external/miriam +copying src/bioregistry/external/miriam/__init__.py -> build/lib/bioregistry/external/miriam +creating build/lib/bioregistry/external/ncbi +copying src/bioregistry/external/ncbi/__init__.py -> build/lib/bioregistry/external/ncbi +creating build/lib/bioregistry/external/lov +copying src/bioregistry/external/lov/__init__.py -> build/lib/bioregistry/external/lov creating build/lib/bioregistry/external/go copying src/bioregistry/external/go/__init__.py -> build/lib/bioregistry/external/go -creating build/lib/bioregistry/external/cheminf -copying src/bioregistry/external/cheminf/__init__.py -> build/lib/bioregistry/external/cheminf +creating build/lib/bioregistry/external/re3data +copying src/bioregistry/external/re3data/__init__.py -> build/lib/bioregistry/external/re3data creating build/lib/bioregistry/external/fairsharing copying src/bioregistry/external/fairsharing/__init__.py -> build/lib/bioregistry/external/fairsharing -creating build/lib/bioregistry/external/pathguide -copying src/bioregistry/external/pathguide/__init__.py -> build/lib/bioregistry/external/pathguide -creating build/lib/bioregistry/external/cellosaurus -copying src/bioregistry/external/cellosaurus/__init__.py -> build/lib/bioregistry/external/cellosaurus -creating build/lib/bioregistry/external/togoid -copying src/bioregistry/external/togoid/__init__.py -> build/lib/bioregistry/external/togoid -creating build/lib/bioregistry/external/biolink -copying src/bioregistry/external/biolink/__init__.py -> build/lib/bioregistry/external/biolink -creating build/lib/bioregistry/external/ontobee -copying src/bioregistry/external/ontobee/__init__.py -> build/lib/bioregistry/external/ontobee creating build/lib/bioregistry/external/ols copying src/bioregistry/external/ols/__init__.py -> build/lib/bioregistry/external/ols -creating build/lib/bioregistry/external/lov -copying src/bioregistry/external/lov/__init__.py -> build/lib/bioregistry/external/lov +creating build/lib/bioregistry/external/n2t +copying src/bioregistry/external/n2t/__init__.py -> build/lib/bioregistry/external/n2t +creating build/lib/bioregistry/external/biolink +copying src/bioregistry/external/biolink/__init__.py -> build/lib/bioregistry/external/biolink +creating build/lib/bioregistry/external/zazuko +copying src/bioregistry/external/zazuko/__init__.py -> build/lib/bioregistry/external/zazuko +creating build/lib/bioregistry/external/bartoc +copying src/bioregistry/external/bartoc/__init__.py -> build/lib/bioregistry/external/bartoc +creating build/lib/bioregistry/external/cheminf +copying src/bioregistry/external/cheminf/__init__.py -> build/lib/bioregistry/external/cheminf +creating build/lib/bioregistry/external/rrid +copying src/bioregistry/external/rrid/__init__.py -> build/lib/bioregistry/external/rrid +creating build/lib/bioregistry/external/uniprot +copying src/bioregistry/external/uniprot/__init__.py -> build/lib/bioregistry/external/uniprot +creating build/lib/bioregistry/external/prefixcommons +copying src/bioregistry/external/prefixcommons/__init__.py -> build/lib/bioregistry/external/prefixcommons +creating build/lib/bioregistry/external/biocontext +copying src/bioregistry/external/biocontext/__init__.py -> build/lib/bioregistry/external/biocontext +creating build/lib/bioregistry/external/hl7 +copying src/bioregistry/external/hl7/__init__.py -> build/lib/bioregistry/external/hl7 creating build/lib/bioregistry/external/cropoct copying src/bioregistry/external/cropoct/__init__.py -> build/lib/bioregistry/external/cropoct -creating build/lib/bioregistry/external/ncbi -copying src/bioregistry/external/ncbi/__init__.py -> build/lib/bioregistry/external/ncbi -creating build/lib/bioregistry/external/re3data -copying src/bioregistry/external/re3data/__init__.py -> build/lib/bioregistry/external/re3data -creating build/lib/bioregistry/external/miriam -copying src/bioregistry/external/miriam/__init__.py -> build/lib/bioregistry/external/miriam +creating build/lib/bioregistry/external/ontobee +copying src/bioregistry/external/ontobee/__init__.py -> build/lib/bioregistry/external/ontobee +creating build/lib/bioregistry/external/obofoundry +copying src/bioregistry/external/obofoundry/__init__.py -> build/lib/bioregistry/external/obofoundry +creating build/lib/bioregistry/external/togoid +copying src/bioregistry/external/togoid/__init__.py -> build/lib/bioregistry/external/togoid +creating build/lib/bioregistry/external/integbio +copying src/bioregistry/external/integbio/__init__.py -> build/lib/bioregistry/external/integbio +creating build/lib/bioregistry/external/cellosaurus +copying src/bioregistry/external/cellosaurus/__init__.py -> build/lib/bioregistry/external/cellosaurus +creating build/lib/bioregistry/external/pathguide +copying src/bioregistry/external/pathguide/__init__.py -> build/lib/bioregistry/external/pathguide +creating build/lib/bioregistry/external/wikidata +copying src/bioregistry/external/wikidata/__init__.py -> build/lib/bioregistry/external/wikidata +creating build/lib/bioregistry/external/aberowl +copying src/bioregistry/external/aberowl/__init__.py -> build/lib/bioregistry/external/aberowl +creating build/lib/bioregistry/external/edam +copying src/bioregistry/external/edam/__init__.py -> build/lib/bioregistry/external/edam running egg_info creating src/bioregistry.egg-info writing src/bioregistry.egg-info/PKG-INFO @@ -1299,14 +1335,8 @@ !! check.warn(importable) copying src/bioregistry/py.typed -> build/lib/bioregistry -copying src/bioregistry/schema/schema.json -> build/lib/bioregistry/schema +copying src/bioregistry/curation/curated_papers.csv -> build/lib/bioregistry/curation copying src/bioregistry/analysis/paper_ranking_requirements.txt -> build/lib/bioregistry/analysis -copying src/bioregistry/data/README.md -> build/lib/bioregistry/data -copying src/bioregistry/data/bioregistry.json -> build/lib/bioregistry/data -copying src/bioregistry/data/collections.json -> build/lib/bioregistry/data -copying src/bioregistry/data/contexts.json -> build/lib/bioregistry/data -copying src/bioregistry/data/metaregistry.json -> build/lib/bioregistry/data -copying src/bioregistry/data/mismatch.json -> build/lib/bioregistry/data creating build/lib/bioregistry/app/static copying src/bioregistry/app/static/logo.svg -> build/lib/bioregistry/app/static creating build/lib/bioregistry/app/templates @@ -1343,289 +1373,295 @@ copying src/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/lib/bioregistry/app/templates/resolve_errors -copying src/bioregistry/curation/curated_papers.csv -> build/lib/bioregistry/curation -copying src/bioregistry/external/integbio/processed.json -> build/lib/bioregistry/external/integbio -copying src/bioregistry/external/biocontext/processed.json -> build/lib/bioregistry/external/biocontext -copying src/bioregistry/external/aberowl/processed.json -> build/lib/bioregistry/external/aberowl -copying src/bioregistry/external/prefixcommons/processed.json -> build/lib/bioregistry/external/prefixcommons -copying src/bioregistry/external/bartoc/processed.json -> build/lib/bioregistry/external/bartoc -copying src/bioregistry/external/edam/processed.json -> build/lib/bioregistry/external/edam -copying src/bioregistry/external/hl7/OID_Report.csv -> build/lib/bioregistry/external/hl7 +copying src/bioregistry/schema/schema.json -> build/lib/bioregistry/schema +copying src/bioregistry/data/README.md -> build/lib/bioregistry/data +copying src/bioregistry/data/bioregistry.json -> build/lib/bioregistry/data +copying src/bioregistry/data/collections.json -> build/lib/bioregistry/data +copying src/bioregistry/data/contexts.json -> build/lib/bioregistry/data +copying src/bioregistry/data/metaregistry.json -> build/lib/bioregistry/data +copying src/bioregistry/data/mismatch.json -> build/lib/bioregistry/data copying src/bioregistry/external/bioportal/agroportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/bioportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/ecoportal.json -> build/lib/bioregistry/external/bioportal -copying src/bioregistry/external/wikidata/processed.json -> build/lib/bioregistry/external/wikidata -copying src/bioregistry/external/uniprot/processed.json -> build/lib/bioregistry/external/uniprot -copying src/bioregistry/external/n2t/processed.json -> build/lib/bioregistry/external/n2t -copying src/bioregistry/external/zazuko/processed.json -> build/lib/bioregistry/external/zazuko -copying src/bioregistry/external/obofoundry/processed.json -> build/lib/bioregistry/external/obofoundry +copying src/bioregistry/external/miriam/processed.json -> build/lib/bioregistry/external/miriam +copying src/bioregistry/external/ncbi/processed.json -> build/lib/bioregistry/external/ncbi +copying src/bioregistry/external/lov/processed.json -> build/lib/bioregistry/external/lov copying src/bioregistry/external/go/processed.json -> build/lib/bioregistry/external/go copying src/bioregistry/external/go/processing_go.json -> build/lib/bioregistry/external/go -copying src/bioregistry/external/cheminf/processed.json -> build/lib/bioregistry/external/cheminf +copying src/bioregistry/external/re3data/processed.json -> build/lib/bioregistry/external/re3data copying src/bioregistry/external/fairsharing/processed.json -> build/lib/bioregistry/external/fairsharing -copying src/bioregistry/external/cellosaurus/processed.json -> build/lib/bioregistry/external/cellosaurus -copying src/bioregistry/external/togoid/processed.json -> build/lib/bioregistry/external/togoid -copying src/bioregistry/external/biolink/processed.json -> build/lib/bioregistry/external/biolink -copying src/bioregistry/external/biolink/processing_biolink.json -> build/lib/bioregistry/external/biolink -copying src/bioregistry/external/ontobee/processed.json -> build/lib/bioregistry/external/ontobee copying src/bioregistry/external/ols/processed.json -> build/lib/bioregistry/external/ols copying src/bioregistry/external/ols/processing_ols.json -> build/lib/bioregistry/external/ols -copying src/bioregistry/external/lov/processed.json -> build/lib/bioregistry/external/lov +copying src/bioregistry/external/n2t/processed.json -> build/lib/bioregistry/external/n2t +copying src/bioregistry/external/biolink/processed.json -> build/lib/bioregistry/external/biolink +copying src/bioregistry/external/biolink/processing_biolink.json -> build/lib/bioregistry/external/biolink +copying src/bioregistry/external/zazuko/processed.json -> build/lib/bioregistry/external/zazuko +copying src/bioregistry/external/bartoc/processed.json -> build/lib/bioregistry/external/bartoc +copying src/bioregistry/external/cheminf/processed.json -> build/lib/bioregistry/external/cheminf +copying src/bioregistry/external/uniprot/processed.json -> build/lib/bioregistry/external/uniprot +copying src/bioregistry/external/prefixcommons/processed.json -> build/lib/bioregistry/external/prefixcommons +copying src/bioregistry/external/biocontext/processed.json -> build/lib/bioregistry/external/biocontext +copying src/bioregistry/external/hl7/OID_Report.csv -> build/lib/bioregistry/external/hl7 copying src/bioregistry/external/cropoct/processed.json -> build/lib/bioregistry/external/cropoct -copying src/bioregistry/external/ncbi/processed.json -> build/lib/bioregistry/external/ncbi -copying src/bioregistry/external/re3data/processed.json -> build/lib/bioregistry/external/re3data -copying src/bioregistry/external/miriam/processed.json -> build/lib/bioregistry/external/miriam +copying src/bioregistry/external/ontobee/processed.json -> build/lib/bioregistry/external/ontobee +copying src/bioregistry/external/obofoundry/processed.json -> build/lib/bioregistry/external/obofoundry +copying src/bioregistry/external/togoid/processed.json -> build/lib/bioregistry/external/togoid +copying src/bioregistry/external/integbio/processed.json -> build/lib/bioregistry/external/integbio +copying src/bioregistry/external/cellosaurus/processed.json -> build/lib/bioregistry/external/cellosaurus +copying src/bioregistry/external/wikidata/processed.json -> build/lib/bioregistry/external/wikidata +copying src/bioregistry/external/aberowl/processed.json -> build/lib/bioregistry/external/aberowl +copying src/bioregistry/external/edam/processed.json -> build/lib/bioregistry/external/edam installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/bioregistry -creating build/bdist.linux-x86_64/wheel/bioregistry/benchmarks -copying build/lib/bioregistry/benchmarks/curie_parsing.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks -copying build/lib/bioregistry/benchmarks/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks -copying build/lib/bioregistry/benchmarks/uri_parsing.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks -copying build/lib/bioregistry/benchmarks/curie_validation.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks -copying build/lib/bioregistry/benchmarks/__main__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks -copying build/lib/bioregistry/benchmarks/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks -copying build/lib/bioregistry/uri_format.py -> build/bdist.linux-x86_64/wheel/./bioregistry -copying build/lib/bioregistry/constants.py -> build/bdist.linux-x86_64/wheel/./bioregistry -copying build/lib/bioregistry/upload_ndex.py -> build/bdist.linux-x86_64/wheel/./bioregistry -creating build/bdist.linux-x86_64/wheel/bioregistry/export -copying build/lib/bioregistry/export/prefix_maps.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export -copying build/lib/bioregistry/export/sssom_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export -copying build/lib/bioregistry/export/rdf_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export -copying build/lib/bioregistry/export/warnings_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export -copying build/lib/bioregistry/export/schema_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export -copying build/lib/bioregistry/export/yaml_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export -copying build/lib/bioregistry/export/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export -copying build/lib/bioregistry/export/tsv_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export -copying build/lib/bioregistry/export/tables_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export -copying build/lib/bioregistry/export/__main__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export -copying build/lib/bioregistry/export/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export -copying build/lib/bioregistry/export/prefixcc.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export +copying build/lib/bioregistry/resolve.py -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/gh -copying build/lib/bioregistry/gh/new_prefix.py -> build/bdist.linux-x86_64/wheel/./bioregistry/gh -copying build/lib/bioregistry/gh/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/gh copying build/lib/bioregistry/gh/github_client.py -> build/bdist.linux-x86_64/wheel/./bioregistry/gh -copying build/lib/bioregistry/resolve.py -> build/bdist.linux-x86_64/wheel/./bioregistry -copying build/lib/bioregistry/bibliometrics.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/gh/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/gh +copying build/lib/bioregistry/gh/new_prefix.py -> build/bdist.linux-x86_64/wheel/./bioregistry/gh creating build/bdist.linux-x86_64/wheel/bioregistry/health +copying build/lib/bioregistry/health/check_homepages.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health copying build/lib/bioregistry/health/check_providers.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health copying build/lib/bioregistry/health/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health -copying build/lib/bioregistry/health/check_homepages.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health -copying build/lib/bioregistry/health/__main__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health copying build/lib/bioregistry/health/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health -copying build/lib/bioregistry/version.py -> build/bdist.linux-x86_64/wheel/./bioregistry -copying build/lib/bioregistry/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/health/__main__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/health copying build/lib/bioregistry/resource_manager.py -> build/bdist.linux-x86_64/wheel/./bioregistry -copying build/lib/bioregistry/collection_api.py -> build/bdist.linux-x86_64/wheel/./bioregistry copying build/lib/bioregistry/schema_utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry -copying build/lib/bioregistry/pandas.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/bibliometrics.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/upload_ndex.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/uri_format.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/parse_version_iri.py -> build/bdist.linux-x86_64/wheel/./bioregistry +creating build/bdist.linux-x86_64/wheel/bioregistry/export +copying build/lib/bioregistry/export/warnings_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export +copying build/lib/bioregistry/export/sssom_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export +copying build/lib/bioregistry/export/yaml_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export +copying build/lib/bioregistry/export/prefixcc.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export +copying build/lib/bioregistry/export/schema_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export +copying build/lib/bioregistry/export/tables_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export +copying build/lib/bioregistry/export/tsv_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export +copying build/lib/bioregistry/export/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export +copying build/lib/bioregistry/export/prefix_maps.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export +copying build/lib/bioregistry/export/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export +copying build/lib/bioregistry/export/__main__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export +copying build/lib/bioregistry/export/rdf_export.py -> build/bdist.linux-x86_64/wheel/./bioregistry/export copying build/lib/bioregistry/license_standardizer.py -> build/bdist.linux-x86_64/wheel/./bioregistry -copying build/lib/bioregistry/py.typed -> build/bdist.linux-x86_64/wheel/./bioregistry -copying build/lib/bioregistry/compare.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/version.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/parse_iri.py -> build/bdist.linux-x86_64/wheel/./bioregistry +creating build/bdist.linux-x86_64/wheel/bioregistry/curation +copying build/lib/bioregistry/curation/rename_metaprefix.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/add_co_providers.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/enrich_publications.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/deprecation_diff.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/add_examples.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/review_pc.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/add_descriptions_from_gs.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/curated_papers.csv -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/suggest_uniprot_providers.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/bulk_import.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/map_bartoc_via_wikidata.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/clean_licenses.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/cleanup_authors.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/make_description_curation_sheet.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/clean_publications.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/add_examples_from_ols.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/suggest_author_curation.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/fix_obo_purls.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/add_ontology_regexes.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/map_re3data_via_fairsharing.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/import_pc_semiautomatic.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/make_health_report_curation_sheet.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/add_examples_from_javert.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/clean_name_suffixes.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/lint.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/summary.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/record_accumulator.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry +creating build/bdist.linux-x86_64/wheel/bioregistry/analysis +copying build/lib/bioregistry/analysis/bioregistry_diff.py -> build/bdist.linux-x86_64/wheel/./bioregistry/analysis +copying build/lib/bioregistry/analysis/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/analysis +copying build/lib/bioregistry/analysis/paper_ranking_requirements.txt -> build/bdist.linux-x86_64/wheel/./bioregistry/analysis +copying build/lib/bioregistry/analysis/paper_ranking.py -> build/bdist.linux-x86_64/wheel/./bioregistry/analysis +copying build/lib/bioregistry/metaresource_api.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/constants.py -> build/bdist.linux-x86_64/wheel/./bioregistry +creating build/bdist.linux-x86_64/wheel/bioregistry/app +copying build/lib/bioregistry/app/wsgi.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app +copying build/lib/bioregistry/app/proxies.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app +copying build/lib/bioregistry/app/ui.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app +copying build/lib/bioregistry/app/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app +creating build/bdist.linux-x86_64/wheel/bioregistry/app/static +copying build/lib/bioregistry/app/static/logo.svg -> build/bdist.linux-x86_64/wheel/./bioregistry/app/static +copying build/lib/bioregistry/app/utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app +creating build/bdist.linux-x86_64/wheel/bioregistry/app/templates +copying build/lib/bioregistry/app/templates/collections.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/collection.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/metaresources.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/metaresource.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/reference.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates +creating build/bdist.linux-x86_64/wheel/bioregistry/app/templates/highlights +copying build/lib/bioregistry/app/templates/highlights/owners.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/highlights +copying build/lib/bioregistry/app/templates/highlights/relations.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/highlights +copying build/lib/bioregistry/app/templates/highlights/twitter.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/highlights +copying build/lib/bioregistry/app/templates/highlights/keywords.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/highlights +copying build/lib/bioregistry/app/templates/contexts.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/resources.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/context.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/macros.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/contributors.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/resource.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/home.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/base.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/contributor.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/prose.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates +creating build/bdist.linux-x86_64/wheel/bioregistry/app/templates/resolve_errors +copying build/lib/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/resolve_errors +copying build/lib/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/resolve_errors +copying build/lib/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/resolve_errors +copying build/lib/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/resolve_errors +creating build/bdist.linux-x86_64/wheel/bioregistry/app/templates/meta +copying build/lib/bioregistry/app/templates/meta/acknowledgements.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta +copying build/lib/bioregistry/app/templates/meta/related.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta +copying build/lib/bioregistry/app/templates/meta/download.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta +copying build/lib/bioregistry/app/templates/meta/schema.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta +copying build/lib/bioregistry/app/templates/meta/sustainability.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta +copying build/lib/bioregistry/app/templates/meta/summary.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta +copying build/lib/bioregistry/app/templates/meta/access.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta +copying build/lib/bioregistry/app/test.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app +copying build/lib/bioregistry/app/constants.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app +copying build/lib/bioregistry/app/impl.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app +copying build/lib/bioregistry/app/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app +copying build/lib/bioregistry/app/api.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app creating build/bdist.linux-x86_64/wheel/bioregistry/schema -copying build/lib/bioregistry/schema/constants.py -> build/bdist.linux-x86_64/wheel/./bioregistry/schema -copying build/lib/bioregistry/schema/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/schema.json -> build/bdist.linux-x86_64/wheel/./bioregistry/schema +copying build/lib/bioregistry/schema/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/struct.py -> build/bdist.linux-x86_64/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry/schema +copying build/lib/bioregistry/schema/constants.py -> build/bdist.linux-x86_64/wheel/./bioregistry/schema +copying build/lib/bioregistry/py.typed -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/external -creating build/bdist.linux-x86_64/wheel/bioregistry/external/integbio -copying build/lib/bioregistry/external/integbio/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/integbio -copying build/lib/bioregistry/external/integbio/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/integbio -creating build/bdist.linux-x86_64/wheel/bioregistry/external/biocontext -copying build/lib/bioregistry/external/biocontext/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biocontext -copying build/lib/bioregistry/external/biocontext/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biocontext -creating build/bdist.linux-x86_64/wheel/bioregistry/external/aberowl -copying build/lib/bioregistry/external/aberowl/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/aberowl -copying build/lib/bioregistry/external/aberowl/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/aberowl -creating build/bdist.linux-x86_64/wheel/bioregistry/external/rrid -copying build/lib/bioregistry/external/rrid/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/rrid -copying build/lib/bioregistry/external/alignment_utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external -creating build/bdist.linux-x86_64/wheel/bioregistry/external/prefixcommons -copying build/lib/bioregistry/external/prefixcommons/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/prefixcommons -copying build/lib/bioregistry/external/prefixcommons/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/prefixcommons -creating build/bdist.linux-x86_64/wheel/bioregistry/external/bartoc -copying build/lib/bioregistry/external/bartoc/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bartoc -copying build/lib/bioregistry/external/bartoc/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bartoc -copying build/lib/bioregistry/external/align.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external -creating build/bdist.linux-x86_64/wheel/bioregistry/external/edam -copying build/lib/bioregistry/external/edam/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/edam -copying build/lib/bioregistry/external/edam/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/edam -creating build/bdist.linux-x86_64/wheel/bioregistry/external/hl7 -copying build/lib/bioregistry/external/hl7/OID_Report.csv -> build/bdist.linux-x86_64/wheel/./bioregistry/external/hl7 -copying build/lib/bioregistry/external/hl7/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/hl7 creating build/bdist.linux-x86_64/wheel/bioregistry/external/bioportal -copying build/lib/bioregistry/external/bioportal/ecoportal.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal -copying build/lib/bioregistry/external/bioportal/agroportal.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/bioportal.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal +copying build/lib/bioregistry/external/bioportal/ecoportal.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/agroportal.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal +copying build/lib/bioregistry/external/bioportal/ecoportal.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal +copying build/lib/bioregistry/external/bioportal/agroportal.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/bioportal.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal -copying build/lib/bioregistry/external/bioportal/ecoportal.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bioportal -creating build/bdist.linux-x86_64/wheel/bioregistry/external/wikidata -copying build/lib/bioregistry/external/wikidata/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/wikidata -copying build/lib/bioregistry/external/wikidata/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/wikidata -creating build/bdist.linux-x86_64/wheel/bioregistry/external/uniprot -copying build/lib/bioregistry/external/uniprot/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/uniprot -copying build/lib/bioregistry/external/uniprot/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/uniprot -creating build/bdist.linux-x86_64/wheel/bioregistry/external/n2t -copying build/lib/bioregistry/external/n2t/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/n2t -copying build/lib/bioregistry/external/n2t/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/n2t -creating build/bdist.linux-x86_64/wheel/bioregistry/external/zazuko -copying build/lib/bioregistry/external/zazuko/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/zazuko -copying build/lib/bioregistry/external/zazuko/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/zazuko -copying build/lib/bioregistry/external/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external -creating build/bdist.linux-x86_64/wheel/bioregistry/external/obofoundry -copying build/lib/bioregistry/external/obofoundry/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/obofoundry -copying build/lib/bioregistry/external/obofoundry/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/obofoundry +creating build/bdist.linux-x86_64/wheel/bioregistry/external/miriam +copying build/lib/bioregistry/external/miriam/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/miriam +copying build/lib/bioregistry/external/miriam/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/miriam +creating build/bdist.linux-x86_64/wheel/bioregistry/external/ncbi +copying build/lib/bioregistry/external/ncbi/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ncbi +copying build/lib/bioregistry/external/ncbi/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ncbi +creating build/bdist.linux-x86_64/wheel/bioregistry/external/lov +copying build/lib/bioregistry/external/lov/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/lov +copying build/lib/bioregistry/external/lov/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/lov creating build/bdist.linux-x86_64/wheel/bioregistry/external/go -copying build/lib/bioregistry/external/go/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/go/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/go +copying build/lib/bioregistry/external/go/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/go/processing_go.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/go -creating build/bdist.linux-x86_64/wheel/bioregistry/external/cheminf -copying build/lib/bioregistry/external/cheminf/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cheminf -copying build/lib/bioregistry/external/cheminf/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cheminf +creating build/bdist.linux-x86_64/wheel/bioregistry/external/re3data +copying build/lib/bioregistry/external/re3data/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/re3data +copying build/lib/bioregistry/external/re3data/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/re3data creating build/bdist.linux-x86_64/wheel/bioregistry/external/fairsharing -copying build/lib/bioregistry/external/fairsharing/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/fairsharing copying build/lib/bioregistry/external/fairsharing/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/fairsharing -creating build/bdist.linux-x86_64/wheel/bioregistry/external/pathguide -copying build/lib/bioregistry/external/pathguide/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/pathguide -creating build/bdist.linux-x86_64/wheel/bioregistry/external/cellosaurus -copying build/lib/bioregistry/external/cellosaurus/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cellosaurus -copying build/lib/bioregistry/external/cellosaurus/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cellosaurus -creating build/bdist.linux-x86_64/wheel/bioregistry/external/togoid -copying build/lib/bioregistry/external/togoid/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/togoid -copying build/lib/bioregistry/external/togoid/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/togoid -creating build/bdist.linux-x86_64/wheel/bioregistry/external/biolink -copying build/lib/bioregistry/external/biolink/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biolink -copying build/lib/bioregistry/external/biolink/processing_biolink.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biolink -copying build/lib/bioregistry/external/biolink/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biolink -creating build/bdist.linux-x86_64/wheel/bioregistry/external/ontobee -copying build/lib/bioregistry/external/ontobee/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ontobee -copying build/lib/bioregistry/external/ontobee/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ontobee +copying build/lib/bioregistry/external/fairsharing/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/fairsharing creating build/bdist.linux-x86_64/wheel/bioregistry/external/ols -copying build/lib/bioregistry/external/ols/processing_ols.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ols -copying build/lib/bioregistry/external/ols/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ols copying build/lib/bioregistry/external/ols/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ols -creating build/bdist.linux-x86_64/wheel/bioregistry/external/lov -copying build/lib/bioregistry/external/lov/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/lov -copying build/lib/bioregistry/external/lov/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/lov +copying build/lib/bioregistry/external/ols/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ols +copying build/lib/bioregistry/external/ols/processing_ols.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ols +creating build/bdist.linux-x86_64/wheel/bioregistry/external/n2t +copying build/lib/bioregistry/external/n2t/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/n2t +copying build/lib/bioregistry/external/n2t/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/n2t +creating build/bdist.linux-x86_64/wheel/bioregistry/external/biolink +copying build/lib/bioregistry/external/biolink/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biolink +copying build/lib/bioregistry/external/biolink/processing_biolink.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biolink +copying build/lib/bioregistry/external/biolink/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biolink +creating build/bdist.linux-x86_64/wheel/bioregistry/external/zazuko +copying build/lib/bioregistry/external/zazuko/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/zazuko +copying build/lib/bioregistry/external/zazuko/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/zazuko +creating build/bdist.linux-x86_64/wheel/bioregistry/external/bartoc +copying build/lib/bioregistry/external/bartoc/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bartoc +copying build/lib/bioregistry/external/bartoc/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/bartoc +creating build/bdist.linux-x86_64/wheel/bioregistry/external/cheminf +copying build/lib/bioregistry/external/cheminf/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cheminf +copying build/lib/bioregistry/external/cheminf/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cheminf +creating build/bdist.linux-x86_64/wheel/bioregistry/external/rrid +copying build/lib/bioregistry/external/rrid/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/rrid +copying build/lib/bioregistry/external/alignment_utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external +copying build/lib/bioregistry/external/align.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external +creating build/bdist.linux-x86_64/wheel/bioregistry/external/uniprot +copying build/lib/bioregistry/external/uniprot/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/uniprot +copying build/lib/bioregistry/external/uniprot/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/uniprot +copying build/lib/bioregistry/external/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external +creating build/bdist.linux-x86_64/wheel/bioregistry/external/prefixcommons +copying build/lib/bioregistry/external/prefixcommons/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/prefixcommons +copying build/lib/bioregistry/external/prefixcommons/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/prefixcommons +creating build/bdist.linux-x86_64/wheel/bioregistry/external/biocontext +copying build/lib/bioregistry/external/biocontext/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biocontext +copying build/lib/bioregistry/external/biocontext/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/biocontext +creating build/bdist.linux-x86_64/wheel/bioregistry/external/hl7 +copying build/lib/bioregistry/external/hl7/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/hl7 +copying build/lib/bioregistry/external/hl7/OID_Report.csv -> build/bdist.linux-x86_64/wheel/./bioregistry/external/hl7 creating build/bdist.linux-x86_64/wheel/bioregistry/external/cropoct -copying build/lib/bioregistry/external/cropoct/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cropoct copying build/lib/bioregistry/external/cropoct/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cropoct -creating build/bdist.linux-x86_64/wheel/bioregistry/external/ncbi -copying build/lib/bioregistry/external/ncbi/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ncbi -copying build/lib/bioregistry/external/ncbi/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ncbi -creating build/bdist.linux-x86_64/wheel/bioregistry/external/re3data -copying build/lib/bioregistry/external/re3data/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/re3data -copying build/lib/bioregistry/external/re3data/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/re3data -creating build/bdist.linux-x86_64/wheel/bioregistry/external/miriam -copying build/lib/bioregistry/external/miriam/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/miriam -copying build/lib/bioregistry/external/miriam/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/miriam -copying build/lib/bioregistry/parse_iri.py -> build/bdist.linux-x86_64/wheel/./bioregistry -creating build/bdist.linux-x86_64/wheel/bioregistry/analysis -copying build/lib/bioregistry/analysis/paper_ranking_requirements.txt -> build/bdist.linux-x86_64/wheel/./bioregistry/analysis -copying build/lib/bioregistry/analysis/paper_ranking.py -> build/bdist.linux-x86_64/wheel/./bioregistry/analysis -copying build/lib/bioregistry/analysis/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/analysis -copying build/lib/bioregistry/analysis/bioregistry_diff.py -> build/bdist.linux-x86_64/wheel/./bioregistry/analysis +copying build/lib/bioregistry/external/cropoct/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cropoct +creating build/bdist.linux-x86_64/wheel/bioregistry/external/ontobee +copying build/lib/bioregistry/external/ontobee/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ontobee +copying build/lib/bioregistry/external/ontobee/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/ontobee +creating build/bdist.linux-x86_64/wheel/bioregistry/external/obofoundry +copying build/lib/bioregistry/external/obofoundry/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/obofoundry +copying build/lib/bioregistry/external/obofoundry/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/obofoundry +creating build/bdist.linux-x86_64/wheel/bioregistry/external/togoid +copying build/lib/bioregistry/external/togoid/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/togoid +copying build/lib/bioregistry/external/togoid/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/togoid +creating build/bdist.linux-x86_64/wheel/bioregistry/external/integbio +copying build/lib/bioregistry/external/integbio/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/integbio +copying build/lib/bioregistry/external/integbio/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/integbio +creating build/bdist.linux-x86_64/wheel/bioregistry/external/cellosaurus +copying build/lib/bioregistry/external/cellosaurus/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cellosaurus +copying build/lib/bioregistry/external/cellosaurus/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/cellosaurus +creating build/bdist.linux-x86_64/wheel/bioregistry/external/pathguide +copying build/lib/bioregistry/external/pathguide/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/pathguide +creating build/bdist.linux-x86_64/wheel/bioregistry/external/wikidata +copying build/lib/bioregistry/external/wikidata/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/wikidata +copying build/lib/bioregistry/external/wikidata/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/wikidata +creating build/bdist.linux-x86_64/wheel/bioregistry/external/aberowl +copying build/lib/bioregistry/external/aberowl/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/aberowl +copying build/lib/bioregistry/external/aberowl/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/aberowl +creating build/bdist.linux-x86_64/wheel/bioregistry/external/edam +copying build/lib/bioregistry/external/edam/processed.json -> build/bdist.linux-x86_64/wheel/./bioregistry/external/edam +copying build/lib/bioregistry/external/edam/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/external/edam +copying build/lib/bioregistry/pandas.py -> build/bdist.linux-x86_64/wheel/./bioregistry +creating build/bdist.linux-x86_64/wheel/bioregistry/benchmarks +copying build/lib/bioregistry/benchmarks/curie_parsing.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks +copying build/lib/bioregistry/benchmarks/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks +copying build/lib/bioregistry/benchmarks/uri_parsing.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks +copying build/lib/bioregistry/benchmarks/curie_validation.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks +copying build/lib/bioregistry/benchmarks/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks +copying build/lib/bioregistry/benchmarks/__main__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/benchmarks +copying build/lib/bioregistry/compare.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/collection_api.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/resolve_identifier.py -> build/bdist.linux-x86_64/wheel/./bioregistry +copying build/lib/bioregistry/__main__.py -> build/bdist.linux-x86_64/wheel/./bioregistry creating build/bdist.linux-x86_64/wheel/bioregistry/data +copying build/lib/bioregistry/data/metaregistry.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/data/collections.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data -copying build/lib/bioregistry/data/README.md -> build/bdist.linux-x86_64/wheel/./bioregistry/data +copying build/lib/bioregistry/data/mismatch.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/data/bioregistry.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/data/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/data -copying build/lib/bioregistry/data/mismatch.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data copying build/lib/bioregistry/data/contexts.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data -copying build/lib/bioregistry/data/metaregistry.json -> build/bdist.linux-x86_64/wheel/./bioregistry/data -copying build/lib/bioregistry/summary.py -> build/bdist.linux-x86_64/wheel/./bioregistry -copying build/lib/bioregistry/__main__.py -> build/bdist.linux-x86_64/wheel/./bioregistry -copying build/lib/bioregistry/parse_version_iri.py -> build/bdist.linux-x86_64/wheel/./bioregistry -copying build/lib/bioregistry/resolve_identifier.py -> build/bdist.linux-x86_64/wheel/./bioregistry -copying build/lib/bioregistry/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry -copying build/lib/bioregistry/lint.py -> build/bdist.linux-x86_64/wheel/./bioregistry -copying build/lib/bioregistry/utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry -copying build/lib/bioregistry/record_accumulator.py -> build/bdist.linux-x86_64/wheel/./bioregistry -creating build/bdist.linux-x86_64/wheel/bioregistry/app -copying build/lib/bioregistry/app/constants.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app -copying build/lib/bioregistry/app/wsgi.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app -copying build/lib/bioregistry/app/proxies.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app -copying build/lib/bioregistry/app/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app -copying build/lib/bioregistry/app/api.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app -copying build/lib/bioregistry/app/test.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app -copying build/lib/bioregistry/app/impl.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app -copying build/lib/bioregistry/app/cli.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app -copying build/lib/bioregistry/app/utils.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app -creating build/bdist.linux-x86_64/wheel/bioregistry/app/static -copying build/lib/bioregistry/app/static/logo.svg -> build/bdist.linux-x86_64/wheel/./bioregistry/app/static -creating build/bdist.linux-x86_64/wheel/bioregistry/app/templates -copying build/lib/bioregistry/app/templates/macros.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/contexts.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/reference.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/metaresources.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/resource.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/base.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/prose.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/home.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/collections.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/metaresource.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/contributor.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/collection.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/context.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/resources.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates -creating build/bdist.linux-x86_64/wheel/bioregistry/app/templates/meta -copying build/lib/bioregistry/app/templates/meta/related.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta -copying build/lib/bioregistry/app/templates/meta/download.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta -copying build/lib/bioregistry/app/templates/meta/summary.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta -copying build/lib/bioregistry/app/templates/meta/acknowledgements.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta -copying build/lib/bioregistry/app/templates/meta/sustainability.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta -copying build/lib/bioregistry/app/templates/meta/access.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta -copying build/lib/bioregistry/app/templates/meta/schema.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/meta -creating build/bdist.linux-x86_64/wheel/bioregistry/app/templates/resolve_errors -copying build/lib/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/resolve_errors -copying build/lib/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/resolve_errors -copying build/lib/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/resolve_errors -copying build/lib/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/resolve_errors -copying build/lib/bioregistry/app/templates/contributors.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates -creating build/bdist.linux-x86_64/wheel/bioregistry/app/templates/highlights -copying build/lib/bioregistry/app/templates/highlights/relations.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/highlights -copying build/lib/bioregistry/app/templates/highlights/keywords.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/highlights -copying build/lib/bioregistry/app/templates/highlights/owners.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/highlights -copying build/lib/bioregistry/app/templates/highlights/twitter.html -> build/bdist.linux-x86_64/wheel/./bioregistry/app/templates/highlights -copying build/lib/bioregistry/app/ui.py -> build/bdist.linux-x86_64/wheel/./bioregistry/app -copying build/lib/bioregistry/metaresource_api.py -> build/bdist.linux-x86_64/wheel/./bioregistry -creating build/bdist.linux-x86_64/wheel/bioregistry/curation -copying build/lib/bioregistry/curation/deprecation_diff.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/fix_obo_purls.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/add_examples.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/clean_name_suffixes.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/make_description_curation_sheet.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/rename_metaprefix.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/suggest_uniprot_providers.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/add_ontology_regexes.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/clean_licenses.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/cleanup_authors.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/__init__.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/add_examples_from_ols.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/review_pc.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/add_descriptions_from_gs.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/curated_papers.csv -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/clean_publications.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/make_health_report_curation_sheet.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/enrich_publications.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/add_examples_from_javert.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/import_pc_semiautomatic.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/bulk_import.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/map_bartoc_via_wikidata.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/suggest_author_curation.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/map_re3data_via_fairsharing.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/add_co_providers.py -> build/bdist.linux-x86_64/wheel/./bioregistry/curation +copying build/lib/bioregistry/data/README.md -> build/bdist.linux-x86_64/wheel/./bioregistry/data running install_egg_info Copying src/bioregistry.egg-info to build/bdist.linux-x86_64/wheel/./bioregistry-0.11.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/bioregistry-0.11.12.dist-info/WHEEL -creating '/build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12/.tmp-b2wiedbq/bioregistry-0.11.12-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it +creating '/build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.12/.tmp-rxvuconk/bioregistry-0.11.12-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'bioregistry/__init__.py' adding 'bioregistry/__main__.py' adding 'bioregistry/bibliometrics.py' @@ -1921,7 +1957,7 @@ warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -== 125 passed, 6 skipped, 6 deselected, 1450840 warnings in 452.71s (0:07:32) == +== 125 passed, 6 skipped, 6 deselected, 1450840 warnings in 300.02s (0:05:00) == create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1956,12 +1992,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2436594/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2436594/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3370675 and its subdirectories -I: Current time: Fri Nov 29 00:24:23 -12 2024 -I: pbuilder-time-stamp: 1732883063 +I: removing directory /srv/workspace/pbuilder/2436594 and its subdirectories +I: Current time: Fri Jan 2 08:54:16 +14 2026 +I: pbuilder-time-stamp: 1767293656