Diff of the two buildlogs: -- --- b1/build.log 2024-12-07 12:22:19.117204682 +0000 +++ b2/build.log 2024-12-07 12:33:45.474252861 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Jan 9 06:41:42 -12 2026 -I: pbuilder-time-stamp: 1767984102 +I: Current time: Sun Dec 8 02:22:24 +14 2024 +I: pbuilder-time-stamp: 1733574144 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying shlex.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2090282/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3789339/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 7 12:22 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3789339/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3789339/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='4a32c92db3754c34bcd0a22064c21b15' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2090282' - PS1='# ' - PS2='> ' + INVOCATION_ID=9803354caf3d4ddb9b9d475074e0dd1b + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3789339 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CPIXwVpV/pbuilderrc_4VIF --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CPIXwVpV/b1 --logfile b1/build.log paleomix_1.3.8-2.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CPIXwVpV/pbuilderrc_jyPW --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CPIXwVpV/b2 --logfile b2/build.log paleomix_1.3.8-2.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2090282/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3789339/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -432,7 +464,7 @@ Get: 291 http://deb.debian.org/debian trixie/main amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-2+b1 [179 kB] Get: 292 http://deb.debian.org/debian trixie/main amd64 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get: 293 http://deb.debian.org/debian trixie/main amd64 python3-setproctitle amd64 1.3.3-1+b5 [19.0 kB] -Fetched 234 MB in 5s (43.1 MB/s) +Fetched 234 MB in 22s (10.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) @@ -1400,8 +1432,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Jan 9 18:44:20 UTC 2026. -Universal Time is now: Fri Jan 9 18:44:20 UTC 2026. +Local time is now: Sat Dec 7 12:29:05 UTC 2024. +Universal Time is now: Sat Dec 7 12:29:05 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... @@ -1822,7 +1854,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/paleomix-1.3.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../paleomix_1.3.8-2_source.changes +I: user script /srv/workspace/pbuilder/3789339/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3789339/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/paleomix-1.3.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../paleomix_1.3.8-2_source.changes dpkg-buildpackage: info: source package paleomix dpkg-buildpackage: info: source version 1.3.8-2 dpkg-buildpackage: info: source distribution unstable @@ -1851,133 +1887,133 @@ running build running build_py creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix -copying paleomix/pipeline.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix -copying paleomix/main.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix copying paleomix/node.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix -copying paleomix/yaml.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix copying paleomix/nodegraph.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix copying paleomix/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix +copying paleomix/pipeline.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix +copying paleomix/main.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix +copying paleomix/yaml.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix +creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources +copying paleomix/resources/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources +creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools +copying paleomix/tools/cleanup.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools +copying paleomix/tools/gtf_to_bed.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools +copying paleomix/tools/vcf_filter.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools +copying paleomix/tools/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools +copying paleomix/tools/depths.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools +copying paleomix/tools/factory.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools +copying paleomix/tools/rmdup_collapsed.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools +copying paleomix/tools/dupcheck.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools +copying paleomix/tools/coverage.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools +copying paleomix/tools/vcf_to_fasta.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools +copying paleomix/tools/validate_fastq.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools +creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/logging.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/makefile.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/vcffilter.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/bedtools.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/procs.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/utilities.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/bamfiles.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/vcfwrap.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/testing.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/text.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/sampling.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/timer.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/rtools.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/argparse.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/system.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/sequences.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/fileutils.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +copying paleomix/common/versions.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common +creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines +copying paleomix/pipelines/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd +copying paleomix/atomiccmd/builder.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd +copying paleomix/atomiccmd/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd copying paleomix/atomiccmd/sets.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd copying paleomix/atomiccmd/command.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd copying paleomix/atomiccmd/pprint.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd -copying paleomix/atomiccmd/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd -copying paleomix/atomiccmd/builder.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes copying paleomix/nodes/phylip.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes +copying paleomix/nodes/picard.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes +copying paleomix/nodes/examl.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes copying paleomix/nodes/samtools.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes copying paleomix/nodes/bedtools.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes -copying paleomix/nodes/mafft.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes +copying paleomix/nodes/mapdamage.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes +copying paleomix/nodes/validation.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes copying paleomix/nodes/commands.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes -copying paleomix/nodes/picard.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes -copying paleomix/nodes/examl.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes copying paleomix/nodes/raxml.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes +copying paleomix/nodes/formats.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes copying paleomix/nodes/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes -copying paleomix/nodes/newick.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes +copying paleomix/nodes/bwa.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes copying paleomix/nodes/adapterremoval.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes -copying paleomix/nodes/mapdamage.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes +copying paleomix/nodes/newick.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes copying paleomix/nodes/bowtie2.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes -copying paleomix/nodes/formats.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes +copying paleomix/nodes/mafft.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes copying paleomix/nodes/sequences.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes -copying paleomix/nodes/validation.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes -copying paleomix/nodes/bwa.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes -creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/rtools.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/bedtools.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/sampling.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/logging.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/system.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/procs.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/versions.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/text.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/vcffilter.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/fileutils.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/vcfwrap.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/utilities.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/testing.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/bamfiles.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/argparse.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/makefile.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/timer.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -copying paleomix/common/sequences.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common -creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools -copying paleomix/tools/validate_fastq.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools -copying paleomix/tools/cleanup.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools -copying paleomix/tools/depths.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools -copying paleomix/tools/factory.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools -copying paleomix/tools/vcf_to_fasta.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools -copying paleomix/tools/gtf_to_bed.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools -copying paleomix/tools/coverage.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools -copying paleomix/tools/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools -copying paleomix/tools/rmdup_collapsed.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools -copying paleomix/tools/dupcheck.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools -copying paleomix/tools/vcf_filter.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools -creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines -copying paleomix/pipelines/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines -creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources -copying paleomix/resources/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources +creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats +copying paleomix/tools/bam_stats/common.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats +copying paleomix/tools/bam_stats/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats +copying paleomix/tools/bam_stats/coverage.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats copying paleomix/common/formats/phylip.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats -copying paleomix/common/formats/fastq.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats copying paleomix/common/formats/msa.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats +copying paleomix/common/formats/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats +copying paleomix/common/formats/fastq.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats +copying paleomix/common/formats/fasta.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats copying paleomix/common/formats/_common.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats copying paleomix/common/formats/_graph.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats -copying paleomix/common/formats/fasta.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats -copying paleomix/common/formats/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats copying paleomix/common/formats/newick.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats -creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats -copying paleomix/tools/bam_stats/common.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats -copying paleomix/tools/bam_stats/coverage.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats -copying paleomix/tools/bam_stats/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo -copying paleomix/pipelines/phylo/config.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo -copying paleomix/pipelines/phylo/pipeline.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo copying paleomix/pipelines/phylo/makefile.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo copying paleomix/pipelines/phylo/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo copying paleomix/pipelines/phylo/example.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo +copying paleomix/pipelines/phylo/pipeline.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo +copying paleomix/pipelines/phylo/config.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo copying paleomix/pipelines/phylo/mkfile.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam -copying paleomix/pipelines/bam/config.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam -copying paleomix/pipelines/bam/pipeline.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/makefile.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam -copying paleomix/pipelines/bam/trim_pipeline.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam -copying paleomix/pipelines/bam/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam -copying paleomix/pipelines/bam/mkfile.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/paths.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam +copying paleomix/pipelines/bam/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam +copying paleomix/pipelines/bam/pipeline.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam +copying paleomix/pipelines/bam/config.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/nodes.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam +copying paleomix/pipelines/bam/trim_pipeline.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam +copying paleomix/pipelines/bam/mkfile.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey -copying paleomix/pipelines/zonkey/config.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey -copying paleomix/pipelines/zonkey/pipeline.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/common.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey +copying paleomix/pipelines/zonkey/database.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/build_db.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/build_mito.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey -copying paleomix/pipelines/zonkey/database.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/build_tped.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey +copying paleomix/pipelines/zonkey/pipeline.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey +copying paleomix/pipelines/zonkey/config.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/parts -copying paleomix/pipelines/phylo/parts/phylo.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/parts copying paleomix/pipelines/phylo/parts/msa.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/parts +copying paleomix/pipelines/phylo/parts/phylo.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/parts copying paleomix/pipelines/phylo/parts/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/parts copying paleomix/pipelines/phylo/parts/genotype.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/parts creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/target.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts +copying paleomix/pipelines/bam/parts/reads.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/statistics.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts -copying paleomix/pipelines/bam/parts/summary.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/prefix.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts -copying paleomix/pipelines/bam/parts/sample.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts -copying paleomix/pipelines/bam/parts/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/library.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts +copying paleomix/pipelines/bam/parts/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/lane.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts -copying paleomix/pipelines/bam/parts/reads.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts +copying paleomix/pipelines/bam/parts/summary.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts +copying paleomix/pipelines/bam/parts/sample.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts creating /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/admixture.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/common.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts -copying paleomix/pipelines/zonkey/parts/summary.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts -copying paleomix/pipelines/zonkey/parts/mitochondria.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/nuclear.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts +copying paleomix/pipelines/zonkey/parts/mitochondria.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/__init__.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/report.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts +copying paleomix/pipelines/zonkey/parts/summary.py -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts running egg_info creating paleomix.egg-info writing paleomix.egg-info/PKG-INFO @@ -2547,7 +2583,7 @@ copying paleomix/resources/rscripts/zonkey/treemix.r -> /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/rscripts/zonkey debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/paleomix-1.3.8' -PATH=/build/reproducible-path/paleomix-1.3.8/bin/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games dh_auto_test +PATH=/build/reproducible-path/paleomix-1.3.8/bin/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path dh_auto_test I: pybuild pybuild:308: cp -a README.rst /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build; I: pybuild base:311: cd /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build; python3.12 -m pytest tests ============================= test session starts ============================== @@ -2600,7 +2636,7 @@ tests/tools_test/factory_test.py xXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX [ 99%] XXXXXXXXXXXXX [100%] -================= 1440 passed, 1 xfailed, 51 xpassed in 12.35s ================= +============ 1440 passed, 1 xfailed, 51 xpassed in 88.19s (0:01:28) ============ make[1]: Leaving directory '/build/reproducible-path/paleomix-1.3.8' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -3132,437 +3168,437 @@ check.warn(importable) running install_lib creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/README.rst -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipeline.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/main.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/sets.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/command.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/__pycache__/pprint.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/__pycache__/command.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/__pycache__/sets.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/__pycache__/builder.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/pprint.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/builder.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/node.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodegraph.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/__pycache__/node.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/__pycache__/nodegraph.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/__pycache__/pipeline.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/__pycache__/main.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/__pycache__/node.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/__pycache__/nodegraph.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/__pycache__/yaml.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/node.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/phylip.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/samtools.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/bedtools.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/mafft.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/bedtools.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/bwa.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/phylip.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/formats.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/commands.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/mapdamage.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/adapterremoval.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/validation.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/raxml.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/sequences.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/bowtie2.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/newick.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/picard.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/examl.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/samtools.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/mafft.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/commands.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/picard.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/examl.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/raxml.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/newick.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/adapterremoval.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/mapdamage.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/bowtie2.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/formats.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/sequences.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/validation.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/bwa.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/__pycache__/main.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/__pycache__ +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/__pycache__ +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts/common +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/rscripts/common/requires.r -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts/common +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts/zonkey +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/rscripts/zonkey/pca.r -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts/zonkey +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/rscripts/zonkey/coverage.r -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts/zonkey +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/rscripts/zonkey/admixture.r -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts/zonkey +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/rscripts/zonkey/treemix.r -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts/zonkey +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/rscripts/zonkey/tinytree.r -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts/zonkey +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/prefixes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/prefixes/rCRS.fasta -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/prefixes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/makefile.yaml -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_03.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_01.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_03.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_03.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_02.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_03.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_02.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_03.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_01.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.collapsed.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.collapsed.truncated.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.singleton.truncated.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_02.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_02.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_04.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_03.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_04.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_02.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_01.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_02.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_01.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_01.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_01.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/setup.sh -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/setup.sh -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/chimpanzee.fasta -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/gorilla.fasta -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/bonobo.fasta -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/rCRS.fasta.fai -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/white_handed_gibbon.fasta -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/rCRS.fasta -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/sumatran_orangutan.fasta -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/makefile.yaml -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/phylogeny/makefile.yaml -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions/rCRS.non_coding.bed -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions/rCRS.protein_coding.CDS.bed -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/synthesize_reads.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/reports +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/reports/zonkey +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/reports/zonkey/report.css -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/reports/zonkey +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/cleanup.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/vcf_to_fasta.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/coverage.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/depths.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/vcf_filter.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/validate_fastq.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/rmdup_collapsed.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/factory.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/cleanup.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/gtf_to_bed.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats/__pycache__/coverage.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats/__pycache__/common.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats/common.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats/coverage.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/vcf_filter.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/depths.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/factory.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/rmdup_collapsed.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/dupcheck.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/coverage.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/vcf_to_fasta.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/validate_fastq.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipeline.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/rtools.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/bedtools.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/sampling.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/phylip.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/fastq.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/msa.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__pycache__/phylip.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__pycache__/msa.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__pycache__/_graph.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__pycache__/fastq.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__pycache__/_common.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__pycache__/newick.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/_common.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/_graph.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/fasta.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/newick.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/logging.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/system.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/procs.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/makefile.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/vcffilter.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/bedtools.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/procs.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/sampling.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/makefile.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/fileutils.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/argparse.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/timer.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/testing.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/bamfiles.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/system.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/logging.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/timer.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/utilities.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/versions.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/makefile.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/vcfwrap.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/fileutils.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/rtools.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/argparse.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/versions.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/sequences.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/vcffilter.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/utilities.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/bamfiles.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/sequences.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/sampling.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/procs.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/text.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/versions.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/text.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/vcffilter.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/fileutils.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/vcfwrap.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__pycache__/logging.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/bedtools.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/procs.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/utilities.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/testing.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/bamfiles.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/argparse.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/makefile.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/vcfwrap.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/testing.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/phylip.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__pycache__/fastq.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__pycache__/_common.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__pycache__/newick.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__pycache__/msa.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__pycache__/_graph.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__pycache__/phylip.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/msa.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/fastq.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/fasta.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/_common.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/_graph.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/formats/newick.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/text.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/sampling.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/timer.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/rtools.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/argparse.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/system.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/sequences.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/validate_fastq.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/cleanup.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/depths.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/factory.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/vcf_to_fasta.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/depths.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/vcf_filter.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/rmdup_collapsed.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/coverage.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/vcf_to_fasta.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/cleanup.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/validate_fastq.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__pycache__/factory.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/gtf_to_bed.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/coverage.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/rmdup_collapsed.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/dupcheck.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats/common.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats/__pycache__/common.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats/__pycache__/coverage.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats/coverage.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/bam_stats/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/tools/vcf_filter.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/yaml.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodegraph.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/fileutils.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/common/versions.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/main.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/config.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/pipeline.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/__pycache__/example.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/__pycache__/makefile.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/__pycache__/mkfile.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/__pycache__/pipeline.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/__pycache__/config.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/makefile.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/parts/phylo.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/parts/msa.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/parts/__pycache__/msa.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/parts/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/parts/__pycache__/phylo.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/parts/__pycache__/genotype.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/parts/msa.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/parts/phylo.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/parts/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/parts/genotype.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/makefile.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/__pycache__/mkfile.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/__pycache__/example.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/__pycache__/pipeline.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/__pycache__/config.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/__pycache__/makefile.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/example.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/pipeline.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/config.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/phylo/mkfile.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/config.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/pipeline.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__pycache__/makefile.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__pycache__/mkfile.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__pycache__/pipeline.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__pycache__/config.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__pycache__/paths.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__pycache__/nodes.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__pycache__/trim_pipeline.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/makefile.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/target.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/statistics.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__pycache__/sample.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__pycache__/reads.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__pycache__/target.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__pycache__/prefix.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__pycache__/library.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__pycache__/lane.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__pycache__/summary.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__pycache__/statistics.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/summary.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__pycache__/target.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__pycache__/summary.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__pycache__/lane.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__pycache__/reads.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__pycache__/prefix.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/target.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/reads.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/statistics.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/prefix.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/sample.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/library.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/lane.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/reads.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/makefile.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/trim_pipeline.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/mkfile.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/summary.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/parts/sample.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__pycache__/mkfile.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__pycache__/pipeline.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__pycache__/config.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__pycache__/makefile.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__pycache__/trim_pipeline.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__pycache__/paths.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__pycache__/nodes.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/paths.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/pipeline.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/config.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/nodes.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/trim_pipeline.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/bam/mkfile.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/config.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/pipeline.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/common.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__pycache__/common.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__pycache__/build_tped.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__pycache__/pipeline.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__pycache__/config.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__pycache__/build_db.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__pycache__/build_mito.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__pycache__/database.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/build_db.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/build_mito.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/admixture.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/common.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/__pycache__/summary.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/__pycache__/report.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/__pycache__/common.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/__pycache__/mitochondria.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/__pycache__/admixture.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/__pycache__/report.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/__pycache__/nuclear.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/__pycache__/summary.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/summary.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/mitochondria.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/__pycache__/mitochondria.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/common.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/nuclear.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/mitochondria.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/report.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/parts/summary.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__pycache__/pipeline.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__pycache__/build_mito.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__pycache__/database.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__pycache__/build_tped.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__pycache__/build_db.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__pycache__/config.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__pycache__/common.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/common.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/database.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/build_db.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/build_mito.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/build_tped.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/reports -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/reports/zonkey -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/reports/zonkey/report.css -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/reports/zonkey -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/__pycache__ -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/__pycache__ -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts/common -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/rscripts/common/requires.r -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts/common -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts/zonkey -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/rscripts/zonkey/pca.r -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts/zonkey -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/rscripts/zonkey/admixture.r -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts/zonkey -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/rscripts/zonkey/coverage.r -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts/zonkey -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/rscripts/zonkey/tinytree.r -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts/zonkey -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/rscripts/zonkey/treemix.r -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/rscripts/zonkey -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_02.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_02.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_03.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_03.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_04.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_01.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_02.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_03.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_02.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_02.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_01.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_03.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_01.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_04.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_01.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_02.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_03.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_03.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_01.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_01.fastq.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.collapsed.truncated.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.collapsed.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.singleton.truncated.gz -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/prefixes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/prefixes/rCRS.fasta -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline/prefixes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/bam_pipeline/makefile.yaml -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/bam_pipeline -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/setup.sh -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/setup.sh -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/sumatran_orangutan.fasta -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/rCRS.fasta -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/rCRS.fasta.fai -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/gorilla.fasta -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/bonobo.fasta -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/white_handed_gibbon.fasta -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/chimpanzee.fasta -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/alignment/makefile.yaml -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/synthesize_reads.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data -creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions/rCRS.non_coding.bed -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions/rCRS.protein_coding.CDS.bed -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/resources/examples/phylo_pipeline/phylogeny/makefile.yaml -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny -copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/README.rst -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipeline.py to pipeline.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/main.py to main.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/sets.py to sets.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/command.py to command.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/pprint.py to pprint.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/builder.py to builder.cpython-312.pyc +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/pipeline.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/pipelines/zonkey/config.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/yaml.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/__pycache__/command.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/__pycache__/pprint.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/__pycache__/builder.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/__pycache__/sets.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/builder.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/sets.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/command.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/atomiccmd/pprint.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/phylip.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/picard.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/examl.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +creating /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/bedtools.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/commands.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/picard.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/samtools.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/bowtie2.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/bwa.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/examl.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/newick.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/formats.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/mafft.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/mapdamage.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/validation.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/phylip.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/adapterremoval.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/sequences.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__pycache__/raxml.cpython-312.pyc -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__pycache__ +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/samtools.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/bedtools.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/mapdamage.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/validation.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/commands.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/raxml.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/formats.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/__init__.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/bwa.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/adapterremoval.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/newick.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/bowtie2.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/mafft.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes +copying /build/reproducible-path/paleomix-1.3.8/.pybuild/cpython3_3.12/build/paleomix/nodes/sequences.py -> /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/node.py to node.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/phylip.py to phylip.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/samtools.py to samtools.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/bedtools.py to bedtools.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/mafft.py to mafft.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/commands.py to commands.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/picard.py to picard.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/examl.py to examl.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/raxml.py to raxml.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/newick.py to newick.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/adapterremoval.py to adapterremoval.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/mapdamage.py to mapdamage.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/bowtie2.py to bowtie2.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/formats.py to formats.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/sequences.py to sequences.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/validation.py to validation.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/bwa.py to bwa.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/rtools.py to rtools.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodegraph.py to nodegraph.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/synthesize_reads.py to synthesize_reads.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/cleanup.py to cleanup.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/gtf_to_bed.py to gtf_to_bed.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats/common.py to common.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats/coverage.py to coverage.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/vcf_filter.py to vcf_filter.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/depths.py to depths.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/factory.py to factory.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/rmdup_collapsed.py to rmdup_collapsed.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/dupcheck.py to dupcheck.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/coverage.py to coverage.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/vcf_to_fasta.py to vcf_to_fasta.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/validate_fastq.py to validate_fastq.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipeline.py to pipeline.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/logging.py to logging.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/makefile.py to makefile.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/vcffilter.py to vcffilter.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/bedtools.py to bedtools.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/sampling.py to sampling.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/procs.py to procs.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/utilities.py to utilities.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/bamfiles.py to bamfiles.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/vcfwrap.py to vcfwrap.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/testing.py to testing.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/phylip.py to phylip.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/fastq.py to fastq.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/msa.py to msa.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/fastq.py to fastq.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/fasta.py to fasta.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/_common.py to _common.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/_graph.py to _graph.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/fasta.py to fasta.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/formats/newick.py to newick.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/logging.py to logging.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/system.py to system.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/procs.py to procs.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/versions.py to versions.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/text.py to text.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/vcffilter.py to vcffilter.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/fileutils.py to fileutils.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/vcfwrap.py to vcfwrap.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/utilities.py to utilities.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/testing.py to testing.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/bamfiles.py to bamfiles.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/argparse.py to argparse.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/makefile.py to makefile.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/sampling.py to sampling.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/timer.py to timer.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/rtools.py to rtools.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/argparse.py to argparse.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/system.py to system.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/sequences.py to sequences.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/validate_fastq.py to validate_fastq.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/cleanup.py to cleanup.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/depths.py to depths.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/factory.py to factory.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/vcf_to_fasta.py to vcf_to_fasta.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/gtf_to_bed.py to gtf_to_bed.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/coverage.py to coverage.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/rmdup_collapsed.py to rmdup_collapsed.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/dupcheck.py to dupcheck.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats/common.py to common.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats/coverage.py to coverage.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/bam_stats/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/tools/vcf_filter.py to vcf_filter.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/yaml.py to yaml.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodegraph.py to nodegraph.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/config.py to config.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/pipeline.py to pipeline.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts/phylo.py to phylo.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/fileutils.py to fileutils.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/common/versions.py to versions.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/main.py to main.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/makefile.py to makefile.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts/msa.py to msa.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts/phylo.py to phylo.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/parts/genotype.py to genotype.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/makefile.py to makefile.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/example.py to example.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/pipeline.py to pipeline.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/config.py to config.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/phylo/mkfile.py to mkfile.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/config.py to config.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/pipeline.py to pipeline.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/makefile.py to makefile.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/target.py to target.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/reads.py to reads.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/statistics.py to statistics.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/summary.py to summary.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/prefix.py to prefix.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/sample.py to sample.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/library.py to library.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/lane.py to lane.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/reads.py to reads.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/makefile.py to makefile.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/trim_pipeline.py to trim_pipeline.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/mkfile.py to mkfile.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/summary.py to summary.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/parts/sample.py to sample.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/paths.py to paths.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/pipeline.py to pipeline.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/config.py to config.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/nodes.py to nodes.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/config.py to config.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/pipeline.py to pipeline.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/common.py to common.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/build_db.py to build_db.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/build_mito.py to build_mito.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/trim_pipeline.py to trim_pipeline.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/bam/mkfile.py to mkfile.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/admixture.py to admixture.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/common.py to common.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/summary.py to summary.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/mitochondria.py to mitochondria.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/nuclear.py to nuclear.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/mitochondria.py to mitochondria.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/report.py to report.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/parts/summary.py to summary.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/common.py to common.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/database.py to database.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/build_db.py to build_db.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/build_mito.py to build_mito.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/build_tped.py to build_tped.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/resources/examples/phylo_pipeline/synthesize_reads.py to synthesize_reads.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/pipeline.py to pipeline.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/pipelines/zonkey/config.py to config.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/yaml.py to yaml.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/builder.py to builder.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/sets.py to sets.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/command.py to command.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/atomiccmd/pprint.py to pprint.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/phylip.py to phylip.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/picard.py to picard.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/examl.py to examl.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/samtools.py to samtools.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/bedtools.py to bedtools.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/mapdamage.py to mapdamage.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/validation.py to validation.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/commands.py to commands.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/raxml.py to raxml.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/formats.py to formats.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/bwa.py to bwa.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/adapterremoval.py to adapterremoval.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/newick.py to newick.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/bowtie2.py to bowtie2.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/mafft.py to mafft.cpython-312.pyc +byte-compiling /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix/nodes/sequences.py to sequences.cpython-312.pyc running install_egg_info Copying paleomix.egg-info to /build/reproducible-path/paleomix-1.3.8/debian/paleomix/usr/lib/python3.12/dist-packages/paleomix-1.3.8.egg-info Skipping SOURCES.txt @@ -3582,15 +3618,17 @@ # sure all files are really copied rsync -a -v tests debian/paleomix/usr/share/doc/paleomix sending incremental file list +tests/ tests/atomiccmd_test/ tests/common_tests/ tests/common_tests/formats_tests/ tests/data/ tests/data/empty_file_1 tests/data/empty_file_2 +tests/tools_test/ -sent 977 bytes received 76 bytes 2,106.00 bytes/sec -total size is 334,827 speedup is 317.97 +sent 1,038 bytes received 160 bytes 2,396.00 bytes/sec +total size is 334,827 speedup is 279.49 # test runner is seeking for paleomix modules in source - we use inside the installed package ### sed -i 's:(find paleomix -mindepth 1:(find /usr/lib/python*/dist-packages/paleomix -mindepth 1:' debian/*/usr/share/doc/*/tests/run #echo "====== Also empty files belong to the docs ======" @@ -3632,7 +3670,7 @@ D: dh_python3 pydist:175: trying to find dependency for setproctitle>=1.1.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps -D: dh_python3 depends:253: D={'python3-ruamel.yaml', 'python3-pysam', 'python3-configargparse', 'python3-setproctitle', 'python3-coloredlogs', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:253: D={'python3-ruamel.yaml', 'python3-coloredlogs', 'python3-pysam', 'python3:any', 'python3-setproctitle', 'python3-configargparse'}; R=[]; S=[]; E=[], B=[]; RT=[] make[1]: Leaving directory '/build/reproducible-path/paleomix-1.3.8' dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild @@ -3668,12 +3706,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3789339/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3789339/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2090282 and its subdirectories -I: Current time: Fri Jan 9 06:45:17 -12 2026 -I: pbuilder-time-stamp: 1767984317 +I: removing directory /srv/workspace/pbuilder/3789339 and its subdirectories +I: Current time: Sun Dec 8 02:33:44 +14 2024 +I: pbuilder-time-stamp: 1733574824