Diff of the two buildlogs: -- --- b1/build.log 2024-10-04 05:14:10.719854498 +0000 +++ b2/build.log 2024-10-04 05:16:56.384803540 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Nov 5 23:33:29 -12 2025 -I: pbuilder-time-stamp: 1762428809 +I: Current time: Fri Oct 4 19:14:13 +14 2024 +I: pbuilder-time-stamp: 1728018853 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -27,51 +27,83 @@ dpkg-source: info: applying skip-one-test-on-i386.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/919786/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1977834/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 4 05:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1977834/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1977834/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='df3e28167c864d1a96a14a2497015336' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='919786' - PS1='# ' - PS2='> ' + INVOCATION_ID=bc095fec369b4ac3a5e735cb81356b6a + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1977834 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1oEAAEZN/pbuilderrc_qKKz --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1oEAAEZN/b1 --logfile b1/build.log opentsne_1.0.2-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1oEAAEZN/pbuilderrc_Bp2e --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1oEAAEZN/b2 --logfile b2/build.log opentsne_1.0.2-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.10.6+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.6-1~bpo12+1 (2024-08-26) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-25-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.106-3 (2024-08-26) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/919786/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1977834/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -237,7 +269,7 @@ Get: 104 http://deb.debian.org/debian trixie/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 python3-sklearn-lib amd64 1.4.2+dfsg-6 [3657 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 python3-sklearn all 1.4.2+dfsg-6 [2248 kB] -Fetched 76.8 MB in 1s (70.7 MB/s) +Fetched 76.8 MB in 1s (85.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19788 files and directories currently installed.) @@ -591,8 +623,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Nov 6 11:34:39 UTC 2025. -Universal Time is now: Thu Nov 6 11:34:39 UTC 2025. +Local time is now: Fri Oct 4 05:14:57 UTC 2024. +Universal Time is now: Fri Oct 4 05:14:57 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -692,7 +724,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/opentsne-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../opentsne_1.0.2-2_source.changes +I: user script /srv/workspace/pbuilder/1977834/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1977834/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/opentsne-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../opentsne_1.0.2-2_source.changes dpkg-buildpackage: info: source package opentsne dpkg-buildpackage: info: source version 1.0.2-2 dpkg-buildpackage: info: source distribution unstable @@ -724,16 +760,16 @@ running build_py creating build/lib.linux-x86_64-cpython-312 creating build/lib.linux-x86_64-cpython-312/openTSNE -copying openTSNE/utils.py -> build/lib.linux-x86_64-cpython-312/openTSNE -copying openTSNE/nearest_neighbors.py -> build/lib.linux-x86_64-cpython-312/openTSNE -copying openTSNE/affinity.py -> build/lib.linux-x86_64-cpython-312/openTSNE copying openTSNE/callbacks.py -> build/lib.linux-x86_64-cpython-312/openTSNE -copying openTSNE/__init__.py -> build/lib.linux-x86_64-cpython-312/openTSNE -copying openTSNE/tsne.py -> build/lib.linux-x86_64-cpython-312/openTSNE -copying openTSNE/metrics.py -> build/lib.linux-x86_64-cpython-312/openTSNE -copying openTSNE/initialization.py -> build/lib.linux-x86_64-cpython-312/openTSNE copying openTSNE/version.py -> build/lib.linux-x86_64-cpython-312/openTSNE copying openTSNE/sklearn.py -> build/lib.linux-x86_64-cpython-312/openTSNE +copying openTSNE/nearest_neighbors.py -> build/lib.linux-x86_64-cpython-312/openTSNE +copying openTSNE/utils.py -> build/lib.linux-x86_64-cpython-312/openTSNE +copying openTSNE/tsne.py -> build/lib.linux-x86_64-cpython-312/openTSNE +copying openTSNE/__init__.py -> build/lib.linux-x86_64-cpython-312/openTSNE +copying openTSNE/initialization.py -> build/lib.linux-x86_64-cpython-312/openTSNE +copying openTSNE/metrics.py -> build/lib.linux-x86_64-cpython-312/openTSNE +copying openTSNE/affinity.py -> build/lib.linux-x86_64-cpython-312/openTSNE creating build/lib.linux-x86_64-cpython-312/openTSNE/dependencies copying openTSNE/dependencies/__init__.py -> build/lib.linux-x86_64-cpython-312/openTSNE/dependencies creating build/lib.linux-x86_64-cpython-312/openTSNE/_matrix_mul @@ -741,9 +777,9 @@ creating build/lib.linux-x86_64-cpython-312/openTSNE/dependencies/annoy copying openTSNE/dependencies/annoy/__init__.py -> build/lib.linux-x86_64-cpython-312/openTSNE/dependencies/annoy running build_ext -creating build/reproducible-path/opentsne-1.0.2/tmpnq9usnvo -x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -c /build/reproducible-path/opentsne-1.0.2/tmpnq9usnvo/omp.c -o build/reproducible-path/opentsne-1.0.2/tmpnq9usnvo/omp.o -x86_64-linux-gnu-gcc build/reproducible-path/opentsne-1.0.2/tmpnq9usnvo/omp.o -o /build/reproducible-path/opentsne-1.0.2/tmpnq9usnvo/omp.c +creating build/reproducible-path/opentsne-1.0.2/tmprb_q2rrc +x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -c /build/reproducible-path/opentsne-1.0.2/tmprb_q2rrc/omp.c -o build/reproducible-path/opentsne-1.0.2/tmprb_q2rrc/omp.o +x86_64-linux-gnu-gcc build/reproducible-path/opentsne-1.0.2/tmprb_q2rrc/omp.o -o /build/reproducible-path/opentsne-1.0.2/tmprb_q2rrc/omp.c performance hint: openTSNE/quad_tree.pyx:73:5: Exception check on 'update_center_of_mass' will always require the GIL to be acquired. Possible solutions: 1. Declare 'update_center_of_mass' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. @@ -854,27 +890,27 @@ creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/openTSNE -copying build/lib.linux-x86_64-cpython-312/openTSNE/utils.py -> build/bdist.linux-x86_64/wheel/./openTSNE +copying build/lib.linux-x86_64-cpython-312/openTSNE/callbacks.py -> build/bdist.linux-x86_64/wheel/./openTSNE +copying build/lib.linux-x86_64-cpython-312/openTSNE/version.py -> build/bdist.linux-x86_64/wheel/./openTSNE +copying build/lib.linux-x86_64-cpython-312/openTSNE/sklearn.py -> build/bdist.linux-x86_64/wheel/./openTSNE copying build/lib.linux-x86_64-cpython-312/openTSNE/nearest_neighbors.py -> build/bdist.linux-x86_64/wheel/./openTSNE -copying build/lib.linux-x86_64-cpython-312/openTSNE/kl_divergence.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./openTSNE -copying build/lib.linux-x86_64-cpython-312/openTSNE/quad_tree.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./openTSNE creating build/bdist.linux-x86_64/wheel/openTSNE/dependencies creating build/bdist.linux-x86_64/wheel/openTSNE/dependencies/annoy copying build/lib.linux-x86_64-cpython-312/openTSNE/dependencies/annoy/annoylib.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./openTSNE/dependencies/annoy copying build/lib.linux-x86_64-cpython-312/openTSNE/dependencies/annoy/__init__.py -> build/bdist.linux-x86_64/wheel/./openTSNE/dependencies/annoy copying build/lib.linux-x86_64-cpython-312/openTSNE/dependencies/__init__.py -> build/bdist.linux-x86_64/wheel/./openTSNE/dependencies -copying build/lib.linux-x86_64-cpython-312/openTSNE/affinity.py -> build/bdist.linux-x86_64/wheel/./openTSNE -copying build/lib.linux-x86_64-cpython-312/openTSNE/callbacks.py -> build/bdist.linux-x86_64/wheel/./openTSNE -copying build/lib.linux-x86_64-cpython-312/openTSNE/__init__.py -> build/bdist.linux-x86_64/wheel/./openTSNE -copying build/lib.linux-x86_64-cpython-312/openTSNE/tsne.py -> build/bdist.linux-x86_64/wheel/./openTSNE +copying build/lib.linux-x86_64-cpython-312/openTSNE/quad_tree.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./openTSNE +copying build/lib.linux-x86_64-cpython-312/openTSNE/utils.py -> build/bdist.linux-x86_64/wheel/./openTSNE creating build/bdist.linux-x86_64/wheel/openTSNE/_matrix_mul -copying build/lib.linux-x86_64-cpython-312/openTSNE/_matrix_mul/matrix_mul.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./openTSNE/_matrix_mul copying build/lib.linux-x86_64-cpython-312/openTSNE/_matrix_mul/__init__.py -> build/bdist.linux-x86_64/wheel/./openTSNE/_matrix_mul -copying build/lib.linux-x86_64-cpython-312/openTSNE/metrics.py -> build/bdist.linux-x86_64/wheel/./openTSNE +copying build/lib.linux-x86_64-cpython-312/openTSNE/_matrix_mul/matrix_mul.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./openTSNE/_matrix_mul +copying build/lib.linux-x86_64-cpython-312/openTSNE/tsne.py -> build/bdist.linux-x86_64/wheel/./openTSNE +copying build/lib.linux-x86_64-cpython-312/openTSNE/__init__.py -> build/bdist.linux-x86_64/wheel/./openTSNE copying build/lib.linux-x86_64-cpython-312/openTSNE/initialization.py -> build/bdist.linux-x86_64/wheel/./openTSNE -copying build/lib.linux-x86_64-cpython-312/openTSNE/version.py -> build/bdist.linux-x86_64/wheel/./openTSNE +copying build/lib.linux-x86_64-cpython-312/openTSNE/metrics.py -> build/bdist.linux-x86_64/wheel/./openTSNE +copying build/lib.linux-x86_64-cpython-312/openTSNE/kl_divergence.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./openTSNE copying build/lib.linux-x86_64-cpython-312/openTSNE/_tsne.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./openTSNE -copying build/lib.linux-x86_64-cpython-312/openTSNE/sklearn.py -> build/bdist.linux-x86_64/wheel/./openTSNE +copying build/lib.linux-x86_64-cpython-312/openTSNE/affinity.py -> build/bdist.linux-x86_64/wheel/./openTSNE running install_egg_info running egg_info creating openTSNE.egg-info @@ -891,7 +927,7 @@ Copying openTSNE.egg-info to build/bdist.linux-x86_64/wheel/./openTSNE-1.0.2.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/openTSNE-1.0.2.dist-info/WHEEL -creating '/build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne/.tmp-8jcejfer/openTSNE-1.0.2-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it +creating '/build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne/.tmp-risjm_48/openTSNE-1.0.2-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'openTSNE/__init__.py' adding 'openTSNE/_tsne.cpython-312-x86_64-linux-gnu.so' adding 'openTSNE/affinity.py' @@ -951,7 +987,7 @@ warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -============ 137 passed, 26 skipped, 7 warnings in 62.48s (0:01:02) ============ +================= 137 passed, 26 skipped, 7 warnings in 49.32s ================= create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -976,8 +1012,8 @@ dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-opentsne-dbgsym' in '../python3-opentsne-dbgsym_1.0.2-2_amd64.deb'. dpkg-deb: building package 'python3-opentsne' in '../python3-opentsne_1.0.2-2_amd64.deb'. +dpkg-deb: building package 'python3-opentsne-dbgsym' in '../python3-opentsne-dbgsym_1.0.2-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../opentsne_1.0.2-2_amd64.buildinfo dpkg-genchanges --build=binary -O../opentsne_1.0.2-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -985,12 +1021,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1977834/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1977834/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/919786 and its subdirectories -I: Current time: Wed Nov 5 23:37:09 -12 2025 -I: pbuilder-time-stamp: 1762429029 +I: removing directory /srv/workspace/pbuilder/1977834 and its subdirectories +I: Current time: Fri Oct 4 19:16:55 +14 2024 +I: pbuilder-time-stamp: 1728019015