Diff of the two buildlogs:

--
--- b1/build.log	2025-02-23 18:46:39.665709429 +0000
+++ b2/build.log	2025-02-23 18:55:46.884952972 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Sat Mar 28 13:00:47 -12 2026
-I: pbuilder-time-stamp: 1774746047
+I: Current time: Mon Feb 24 08:46:42 +14 2025
+I: pbuilder-time-stamp: 1740336402
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
 I: copying local configuration
@@ -29,51 +29,83 @@
 dpkg-source: info: applying python3.13
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/653172/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/1611740/tmp/hooks/D01_modify_environment starting
+debug: Running on infom01-amd64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Feb 23 18:46 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/1611740/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/1611740/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='amd64'
-  DEBIAN_FRONTEND='noninteractive'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
+  BASH_VERSION='5.2.37(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=amd64
+  DEBIAN_FRONTEND=noninteractive
   DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
-  DISTRIBUTION='trixie'
-  HOME='/root'
-  HOST_ARCH='amd64'
+  DIRSTACK=()
+  DISTRIBUTION=trixie
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=x86_64
+  HOST_ARCH=amd64
   IFS=' 	
   '
-  INVOCATION_ID='a3bd1d8779a34028abb00fc17c84a25e'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='653172'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=4f6036aae0e042aa9bf3fb06280b1cae
+  LANG=C
+  LANGUAGE=et_EE:et
+  LC_ALL=C
+  MACHTYPE=x86_64-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=1611740
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1d1LBYqX/pbuilderrc_CdvK --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1d1LBYqX/b1 --logfile b1/build.log obitools_3.0.1~b26+dfsg-4.dsc'
-  SUDO_GID='109'
-  SUDO_UID='104'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1d1LBYqX/pbuilderrc_LJ6b --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1d1LBYqX/b2 --logfile b2/build.log obitools_3.0.1~b26+dfsg-4.dsc'
+  SUDO_GID=109
+  SUDO_UID=104
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
 I: uname -a
-  Linux infom02-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 6.1.0-31-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
 I: ls -l /bin
-  lrwxrwxrwx 1 root root 7 Nov 22  2024 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/653172/tmp/hooks/D02_print_environment finished
+  lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/1611740/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -215,7 +247,7 @@
 Get: 93 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.13.1-2 [10.2 kB]
 Get: 94 http://deb.debian.org/debian trixie/main amd64 python3.13-dev amd64 3.13.2-1 [507 kB]
 Get: 95 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.13.1-2 [26.1 kB]
-Fetched 60.8 MB in 2s (27.1 MB/s)
+Fetched 60.8 MB in 2s (30.9 MB/s)
 Preconfiguring packages ...
 Selecting previously unselected package libpython3.13-minimal:amd64.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19805 files and directories currently installed.)
@@ -535,8 +567,8 @@
 Setting up tzdata (2025a-2) ...
 
 Current default time zone: 'Etc/UTC'
-Local time is now:      Sun Mar 29 01:02:02 UTC 2026.
-Universal Time is now:  Sun Mar 29 01:02:02 UTC 2026.
+Local time is now:      Sun Feb 23 18:47:50 UTC 2025.
+Universal Time is now:  Sun Feb 23 18:47:50 UTC 2025.
 Run 'dpkg-reconfigure tzdata' if you wish to change it.
 
 Setting up autotools-dev (20220109.1) ...
@@ -622,7 +654,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../obitools_3.0.1~b26+dfsg-4_source.changes
+I: user script /srv/workspace/pbuilder/1611740/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for trixie
+I: user script /srv/workspace/pbuilder/1611740/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../obitools_3.0.1~b26+dfsg-4_source.changes
 dpkg-buildpackage: info: source package obitools
 dpkg-buildpackage: info: source version 3.0.1~b26+dfsg-4
 dpkg-buildpackage: info: source distribution unstable
@@ -650,85 +686,85 @@
    dh_auto_configure -O--buildsystem=pybuild
 I: pybuild base:311: python3.13 setup.py config 
 Compiling python/obitools3/utils.pyx because it changed.
-Compiling python/obitools3/libalign/_qsassemble.pyx because it changed.
-Compiling python/obitools3/libalign/_freeendgapfm.pyx because it changed.
-Compiling python/obitools3/libalign/_freeendgap.pyx because it changed.
-Compiling python/obitools3/libalign/_qsrassemble.pyx because it changed.
-Compiling python/obitools3/libalign/_nws.pyx because it changed.
-Compiling python/obitools3/libalign/shifted_ali.pyx because it changed.
-Compiling python/obitools3/libalign/_assemble.pyx because it changed.
-Compiling python/obitools3/libalign/apat_pattern.pyx because it changed.
-Compiling python/obitools3/libalign/_solexapairend.pyx because it changed.
-Compiling python/obitools3/libalign/_rassemble.pyx because it changed.
-Compiling python/obitools3/libalign/_dynamic.pyx because it changed.
-Compiling python/obitools3/format/fasta.pyx because it changed.
-Compiling python/obitools3/format/header.pyx because it changed.
-Compiling python/obitools3/format/fastq.pyx because it changed.
-Compiling python/obitools3/format/tab.pyx because it changed.
-Compiling python/obitools3/uri/decode.pyx because it changed.
-Compiling python/obitools3/commands/sort.pyx because it changed.
-Compiling python/obitools3/commands/split.pyx because it changed.
+Compiling python/obitools3/files/uncompress.pyx because it changed.
+Compiling python/obitools3/files/universalopener.pyx because it changed.
+Compiling python/obitools3/files/linebuffer.pyx because it changed.
+Compiling python/obitools3/writers/fasta.pyx because it changed.
+Compiling python/obitools3/writers/fastq.pyx because it changed.
+Compiling python/obitools3/writers/tab.pyx because it changed.
+Compiling python/obitools3/commands/clean_dms.pyx because it changed.
 Compiling python/obitools3/commands/uniq.pyx because it changed.
-Compiling python/obitools3/commands/tail.pyx because it changed.
-Compiling python/obitools3/commands/clean.pyx because it changed.
-Compiling python/obitools3/commands/ecopcr.pyx because it changed.
-Compiling python/obitools3/commands/import.pyx because it changed.
-Compiling python/obitools3/commands/head.pyx because it changed.
-Compiling python/obitools3/commands/rm.pyx because it changed.
 Compiling python/obitools3/commands/ls.pyx because it changed.
-Compiling python/obitools3/commands/export.pyx because it changed.
+Compiling python/obitools3/commands/clean.pyx because it changed.
+Compiling python/obitools3/commands/split.pyx because it changed.
+Compiling python/obitools3/commands/grep.pyx because it changed.
+Compiling python/obitools3/commands/history.pyx because it changed.
+Compiling python/obitools3/commands/sort.pyx because it changed.
 Compiling python/obitools3/commands/less.pyx because it changed.
-Compiling python/obitools3/commands/cat.pyx because it changed.
 Compiling python/obitools3/commands/test.pyx because it changed.
-Compiling python/obitools3/commands/alignpairedend.pyx because it changed.
-Compiling python/obitools3/commands/ecotag.pyx because it changed.
-Compiling python/obitools3/commands/annotate.pyx because it changed.
+Compiling python/obitools3/commands/rm.pyx because it changed.
 Compiling python/obitools3/commands/ngsfilter.pyx because it changed.
-Compiling python/obitools3/commands/clean_dms.pyx because it changed.
+Compiling python/obitools3/commands/tail.pyx because it changed.
 Compiling python/obitools3/commands/taxonomy.pyx because it changed.
+Compiling python/obitools3/commands/ecopcr.pyx because it changed.
+Compiling python/obitools3/commands/head.pyx because it changed.
 Compiling python/obitools3/commands/build_ref_db.pyx because it changed.
-Compiling python/obitools3/commands/grep.pyx because it changed.
-Compiling python/obitools3/commands/count.pyx because it changed.
-Compiling python/obitools3/commands/history.pyx because it changed.
 Compiling python/obitools3/commands/stats.pyx because it changed.
 Compiling python/obitools3/commands/align.pyx because it changed.
+Compiling python/obitools3/commands/import.pyx because it changed.
+Compiling python/obitools3/commands/cat.pyx because it changed.
 Compiling python/obitools3/commands/addtaxids.pyx because it changed.
-Compiling python/obitools3/dms/obiseq.pyx because it changed.
-Compiling python/obitools3/dms/dms.pyx because it changed.
+Compiling python/obitools3/commands/ecotag.pyx because it changed.
+Compiling python/obitools3/commands/alignpairedend.pyx because it changed.
+Compiling python/obitools3/commands/annotate.pyx because it changed.
+Compiling python/obitools3/commands/count.pyx because it changed.
+Compiling python/obitools3/commands/export.pyx because it changed.
+Compiling python/obitools3/apps/logging.pyx because it changed.
+Compiling python/obitools3/apps/config.pyx because it changed.
+Compiling python/obitools3/apps/command.pyx because it changed.
+Compiling python/obitools3/apps/temp.pyx because it changed.
+Compiling python/obitools3/apps/progress.pyx because it changed.
+Compiling python/obitools3/apps/arguments.pyx because it changed.
+Compiling python/obitools3/uri/decode.pyx because it changed.
+Compiling python/obitools3/libalign/_assemble.pyx because it changed.
+Compiling python/obitools3/libalign/_rassemble.pyx because it changed.
+Compiling python/obitools3/libalign/_qsrassemble.pyx because it changed.
+Compiling python/obitools3/libalign/_dynamic.pyx because it changed.
+Compiling python/obitools3/libalign/_freeendgap.pyx because it changed.
+Compiling python/obitools3/libalign/_solexapairend.pyx because it changed.
+Compiling python/obitools3/libalign/_freeendgapfm.pyx because it changed.
+Compiling python/obitools3/libalign/_nws.pyx because it changed.
+Compiling python/obitools3/libalign/_qsassemble.pyx because it changed.
+Compiling python/obitools3/libalign/apat_pattern.pyx because it changed.
+Compiling python/obitools3/libalign/shifted_ali.pyx because it changed.
+Compiling python/obitools3/format/fasta.pyx because it changed.
+Compiling python/obitools3/format/header.pyx because it changed.
+Compiling python/obitools3/format/fastq.pyx because it changed.
+Compiling python/obitools3/format/tab.pyx because it changed.
+Compiling python/obitools3/parsers/fasta.pyx because it changed.
+Compiling python/obitools3/parsers/ngsfilter.pyx because it changed.
+Compiling python/obitools3/parsers/header.pyx because it changed.
+Compiling python/obitools3/parsers/fastq.pyx because it changed.
+Compiling python/obitools3/parsers/universal.pyx because it changed.
+Compiling python/obitools3/parsers/embl.pyx because it changed.
+Compiling python/obitools3/parsers/embl_genbank_features.pyx because it changed.
+Compiling python/obitools3/parsers/genbank.pyx because it changed.
+Compiling python/obitools3/parsers/tab.pyx because it changed.
 Compiling python/obitools3/dms/object.pyx because it changed.
-Compiling python/obitools3/dms/taxo/taxo.pyx because it changed.
-Compiling python/obitools3/dms/view/view.pyx because it changed.
-Compiling python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx because it changed.
+Compiling python/obitools3/dms/dms.pyx because it changed.
+Compiling python/obitools3/dms/obiseq.pyx because it changed.
 Compiling python/obitools3/dms/column/column.pyx because it changed.
 Compiling python/obitools3/dms/column/column_idx.pyx because it changed.
-Compiling python/obitools3/dms/column/typed_column/qual.pyx because it changed.
+Compiling python/obitools3/dms/column/typed_column/str.pyx because it changed.
 Compiling python/obitools3/dms/column/typed_column/char.pyx because it changed.
+Compiling python/obitools3/dms/column/typed_column/bool.pyx because it changed.
 Compiling python/obitools3/dms/column/typed_column/int.pyx because it changed.
+Compiling python/obitools3/dms/column/typed_column/qual.pyx because it changed.
 Compiling python/obitools3/dms/column/typed_column/seq.pyx because it changed.
-Compiling python/obitools3/dms/column/typed_column/bool.pyx because it changed.
-Compiling python/obitools3/dms/column/typed_column/str.pyx because it changed.
 Compiling python/obitools3/dms/column/typed_column/float.pyx because it changed.
-Compiling python/obitools3/parsers/embl_genbank_features.pyx because it changed.
-Compiling python/obitools3/parsers/genbank.pyx because it changed.
-Compiling python/obitools3/parsers/embl.pyx because it changed.
-Compiling python/obitools3/parsers/fasta.pyx because it changed.
-Compiling python/obitools3/parsers/universal.pyx because it changed.
-Compiling python/obitools3/parsers/ngsfilter.pyx because it changed.
-Compiling python/obitools3/parsers/header.pyx because it changed.
-Compiling python/obitools3/parsers/fastq.pyx because it changed.
-Compiling python/obitools3/parsers/tab.pyx because it changed.
-Compiling python/obitools3/writers/fasta.pyx because it changed.
-Compiling python/obitools3/writers/fastq.pyx because it changed.
-Compiling python/obitools3/writers/tab.pyx because it changed.
-Compiling python/obitools3/apps/arguments.pyx because it changed.
-Compiling python/obitools3/apps/config.pyx because it changed.
-Compiling python/obitools3/apps/progress.pyx because it changed.
-Compiling python/obitools3/apps/command.pyx because it changed.
-Compiling python/obitools3/apps/logging.pyx because it changed.
-Compiling python/obitools3/apps/temp.pyx because it changed.
-Compiling python/obitools3/files/uncompress.pyx because it changed.
-Compiling python/obitools3/files/linebuffer.pyx because it changed.
-Compiling python/obitools3/files/universalopener.pyx because it changed.
+Compiling python/obitools3/dms/taxo/taxo.pyx because it changed.
+Compiling python/obitools3/dms/view/view.pyx because it changed.
+Compiling python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx because it changed.
 [ 1/80] Cythonizing python/obitools3/apps/arguments.pyx
 [ 2/80] Cythonizing python/obitools3/apps/command.pyx
 [ 3/80] Cythonizing python/obitools3/apps/config.pyx
@@ -833,7 +869,7 @@
 -- Detecting C compile features - done
 -- Found OpenMP_C: -fopenmp (found version "4.5")
 -- Found OpenMP: TRUE (found version "4.5")
--- Configuring done (0.8s)
+-- Configuring done (0.6s)
 -- Generating done (0.0s)
 CMake Warning:
   Manually-specified variables were not used by the project:
@@ -976,201 +1012,256 @@
 make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
 running build_py
 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3
-copying python/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3
 copying python/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3
+copying python/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files
+copying python/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers
+copying python/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands
+copying python/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps
+copying python/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/optiongroups
+copying python/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/optiongroups
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri
+copying python/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri
 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign
-copying python/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign
 copying python/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign
+copying python/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign
 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format
 copying python/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri
-copying python/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands
-copying python/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers
+copying python/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers
 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms
 copying python/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo
-copying python/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo
 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/capi
 copying python/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/capi
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view
-copying python/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view
-copying python/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view
 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column
 copying python/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column
 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column
 copying python/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers
-copying python/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers
-copying python/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps
-copying python/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/optiongroups
-copying python/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/optiongroups
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files
-copying python/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo
+copying python/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view
+copying python/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view
+copying python/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view
 running build_ext
 building 'obitools3.utils' extension
 creating build/temp.linux-x86_64-cpython-313/build/python/obitools3
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/utils.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/utils.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/utils.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/utils.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.libalign._qsassemble' extension
-creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_qsassemble.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_qsassemble.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_qsassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsassemble.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.libalign._freeendgapfm' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_freeendgapfm.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_freeendgapfm.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_freeendgapfm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.libalign._freeendgap' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_freeendgap.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_freeendgap.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_freeendgap.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgap.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.libalign._qsrassemble' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_qsrassemble.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_qsrassemble.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_qsrassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsrassemble.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.libalign._nws' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_nws.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_nws.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_nws.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_nws.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.libalign.shifted_ali' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/shifted_ali.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/shifted_ali.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/shifted_ali.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/shifted_ali.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.libalign._assemble' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_assemble.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_assemble.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_assemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_assemble.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.libalign.apat_pattern' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/apat_pattern.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/apat_pattern.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/apat_pattern.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/apat_pattern.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.libalign._solexapairend' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_solexapairend.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_solexapairend.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_solexapairend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_solexapairend.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.libalign._rassemble' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/libalign/_rassemble.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_rassemble.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/libalign/_rassemble.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_rassemble.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.libalign._dynamic' extension
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-building 'obitools3.commands.sort' extension
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+building 'obitools3.writers.fasta' extension
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+building 'obitools3.writers.tab' extension
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+building 'obitools3.commands.clean_dms' extension
 creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/sort.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/sort.o -w -fPIC
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-building 'obitools3.commands.split' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/split.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/split.o -w -fPIC
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 building 'obitools3.commands.uniq' extension
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/uniq.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/uniq.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/uniq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/uniq.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.commands.tail' extension
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-building 'obitools3.commands.clean' extension
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-building 'obitools3.commands.ecopcr' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ecopcr.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ecopcr.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ecopcr.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecopcr.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.commands.import' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/import.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/import.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/import.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/import.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.commands.head' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/head.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/head.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/head.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/head.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.commands.rm' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/rm.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/rm.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/rm.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/rm.cpython-313-x86_64-linux-gnu.so
 building 'obitools3.commands.ls' extension
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ls.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ls.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ls.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ls.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.commands.export' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/export.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/export.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/export.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/export.cpython-313-x86_64-linux-gnu.so
+building 'obitools3.commands.clean' extension
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+building 'obitools3.commands.split' extension
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+building 'obitools3.commands.grep' extension
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+building 'obitools3.commands.history' extension
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+building 'obitools3.commands.sort' extension
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 building 'obitools3.commands.less' extension
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/less.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/less.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/less.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/less.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.commands.cat' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/cat.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/cat.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/cat.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/cat.cpython-313-x86_64-linux-gnu.so
 building 'obitools3.commands.test' extension
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/test.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/test.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/test.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/test.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.commands.alignpairedend' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/alignpairedend.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/alignpairedend.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/alignpairedend.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/alignpairedend.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.commands.ecotag' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ecotag.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ecotag.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ecotag.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecotag.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.commands.annotate' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/annotate.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/annotate.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/annotate.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/annotate.cpython-313-x86_64-linux-gnu.so
+building 'obitools3.commands.rm' extension
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 building 'obitools3.commands.ngsfilter' extension
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ngsfilter.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ngsfilter.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ngsfilter.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ngsfilter.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.commands.clean_dms' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/clean_dms.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/clean_dms.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/clean_dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean_dms.cpython-313-x86_64-linux-gnu.so
+building 'obitools3.commands.tail' extension
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 building 'obitools3.commands.taxonomy' extension
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/taxonomy.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/taxonomy.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/taxonomy.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/taxonomy.cpython-313-x86_64-linux-gnu.so
+building 'obitools3.commands.ecopcr' extension
+x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/ecopcr.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/ecopcr.o -w -fPIC
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+building 'obitools3.commands.head' extension
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 building 'obitools3.commands.build_ref_db' extension
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/build_ref_db.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/build_ref_db.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/build_ref_db.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/build_ref_db.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.commands.grep' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/grep.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/grep.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/grep.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/grep.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.commands.count' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/count.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/count.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/count.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/count.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.commands.history' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/history.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/history.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/history.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/history.cpython-313-x86_64-linux-gnu.so
 building 'obitools3.commands.stats' extension
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/stats.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/stats.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/stats.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/stats.cpython-313-x86_64-linux-gnu.so
 building 'obitools3.commands.align' extension
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/align.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/align.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/align.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/align.cpython-313-x86_64-linux-gnu.so
+building 'obitools3.commands.import' extension
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+building 'obitools3.commands.cat' extension
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 building 'obitools3.commands.addtaxids' extension
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/commands/addtaxids.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/addtaxids.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/commands/addtaxids.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/addtaxids.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.dms.obiseq' extension
+building 'obitools3.commands.ecotag' extension
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+building 'obitools3.commands.alignpairedend' extension
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+building 'obitools3.commands.annotate' extension
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+building 'obitools3.commands.count' extension
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+building 'obitools3.libalign.shifted_ali' extension
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+building 'obitools3.format.fasta' extension
+creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/format
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+building 'obitools3.format.fastq' extension
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+building 'obitools3.format.tab' extension
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+building 'obitools3.parsers.fasta' extension
+creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers
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+building 'obitools3.parsers.ngsfilter' extension
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+building 'obitools3.parsers.header' extension
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+building 'obitools3.parsers.fastq' extension
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+building 'obitools3.parsers.universal' extension
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+building 'obitools3.parsers.embl' extension
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+building 'obitools3.parsers.embl_genbank_features' extension
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+building 'obitools3.parsers.genbank' extension
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+building 'obitools3.parsers.tab' extension
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+building 'obitools3.dms.object' extension
 creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/obiseq.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/obiseq.o -w -fPIC
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 building 'obitools3.dms.dms' extension
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/dms.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/dms.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/dms.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/dms.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.dms.object' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/object.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/object.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/object.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/object.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.dms.taxo.taxo' extension
-creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/taxo
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/taxo/taxo.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/taxo/taxo.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/taxo/taxo.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo/taxo.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.dms.view.view' extension
-creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/view/view.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/view.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/view.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/view.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.dms.view.typed_view.view_NUC_SEQS' extension
-creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/typed_view
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-313-x86_64-linux-gnu.so
+building 'obitools3.dms.obiseq' extension
+x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/obiseq.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/obiseq.o -w -fPIC
+x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/obiseq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/obiseq.cpython-313-x86_64-linux-gnu.so
 building 'obitools3.dms.column.column' extension
 creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/column.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/column.o -w -fPIC
@@ -1178,95 +1269,40 @@
 building 'obitools3.dms.column.column_idx' extension
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/column_idx.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/column_idx.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/column_idx.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column_idx.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.dms.column.typed_column.qual' extension
+building 'obitools3.dms.column.typed_column.str' extension
 creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/qual.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/qual.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/qual.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-313-x86_64-linux-gnu.so
+x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/str.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/str.o -w -fPIC
+x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/str.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/str.cpython-313-x86_64-linux-gnu.so
 building 'obitools3.dms.column.typed_column.char' extension
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/char.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/char.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/char.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/char.cpython-313-x86_64-linux-gnu.so
+building 'obitools3.dms.column.typed_column.bool' extension
+x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/bool.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/bool.o -w -fPIC
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 building 'obitools3.dms.column.typed_column.int' extension
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/int.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/int.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/int.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/int.cpython-313-x86_64-linux-gnu.so
+building 'obitools3.dms.column.typed_column.qual' extension
+x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/qual.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/qual.o -w -fPIC
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 building 'obitools3.dms.column.typed_column.seq' extension
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/seq.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/seq.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/seq.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.dms.column.typed_column.bool' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/bool.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/bool.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/bool.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.dms.column.typed_column.str' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/str.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/str.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/str.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/str.cpython-313-x86_64-linux-gnu.so
 building 'obitools3.dms.column.typed_column.float' extension
 x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/column/typed_column/float.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/float.o -w -fPIC
 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/column/typed_column/float.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/float.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.parsers.embl_genbank_features' extension
-creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/parsers/embl_genbank_features.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/parsers/embl_genbank_features.o -w -fPIC
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-building 'obitools3.parsers.embl' extension
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-building 'obitools3.writers.fasta' extension
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-creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/files
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/files/uncompress.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/uncompress.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/uncompress.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/uncompress.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.files.linebuffer' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/files/linebuffer.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/linebuffer.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/linebuffer.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/linebuffer.cpython-313-x86_64-linux-gnu.so
-building 'obitools3.files.universalopener' extension
-x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/files/universalopener.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/universalopener.o -w -fPIC
-x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/files/universalopener.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/universalopener.cpython-313-x86_64-linux-gnu.so
+building 'obitools3.dms.taxo.taxo' extension
+creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/taxo
+x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/taxo/taxo.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/taxo/taxo.o -w -fPIC
+x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/taxo/taxo.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo/taxo.cpython-313-x86_64-linux-gnu.so
+building 'obitools3.dms.view.view' extension
+creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view
+x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/view/view.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/view.o -w -fPIC
+x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/view.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/view.cpython-313-x86_64-linux-gnu.so
+building 'obitools3.dms.view.typed_view.view_NUC_SEQS' extension
+creating build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/typed_view
+x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.13 -c build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.c -o build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -w -fPIC
+x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -L/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg -L/usr/lib/x86_64-linux-gnu -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-313-x86_64-linux-gnu.so
 running build_scripts
 creating build/scripts-3.13
 copying and adjusting scripts/obi -> build/scripts-3.13
@@ -1320,7 +1356,7 @@
 
 
 -- Configuring done (0.0s)
--- Generating done (0.0s)
+-- Generating done (0.2s)
 -- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject
 Compile the shared C library
 make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject'
@@ -1354,140 +1390,140 @@
 running install_lib
 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages
 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/utils.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/universalopener.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/linebuffer.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/uncompress.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/fastq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/tab.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/fasta.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/uniq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/addtaxids.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ngsfilter.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/taxonomy.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/split.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/align.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/head.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecopcr.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/test.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/less.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/annotate.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/history.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecotag.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/tail.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ls.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/alignpairedend.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/import.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/cat.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/stats.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/grep.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/count.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/rm.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/sort.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/export.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean_dms.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/build_ref_db.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/progress.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/command.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/config.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/optiongroups
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/optiongroups
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/arguments.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/logging.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/temp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri/decode.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri
 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/shifted_ali.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_dynamic.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_rassemble.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/apat_pattern.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsassemble.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgap.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_rassemble.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_nws.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_assemble.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_dynamic.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/apat_pattern.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsrassemble.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/shifted_ali.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_qsassemble.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_solexapairend.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/libalign/_freeendgapfm.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3
 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/tab.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format
 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/fastq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/tab.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format
 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/fasta.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format
 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/header.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri/decode.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/grep.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/import.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/build_ref_db.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/tail.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/align.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/addtaxids.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/less.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/export.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/taxonomy.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/count.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecotag.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ngsfilter.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/stats.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/rm.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ls.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/history.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/sort.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/uniq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/alignpairedend.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/cat.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/split.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/clean_dms.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/test.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/annotate.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/ecopcr.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/commands/head.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/ngsfilter.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/fastq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/tab.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/embl.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/genbank.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/universal.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/fasta.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/header.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo/taxo.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/dms.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms
 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/capi
 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/capi
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/obiseq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/view.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/object.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/dms.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms
 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column_idx.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column
 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/str.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/float.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/qual.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/char.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/int.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/float.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/seq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/int.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/typed_column/bool.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column
 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/object.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/tab.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/fastq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/embl_genbank_features.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/fasta.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/header.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/ngsfilter.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/genbank.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/universal.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/parsers/embl.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/utils.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/tab.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/fastq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/fasta.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/progress.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/config.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/logging.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/optiongroups
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/optiongroups
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/command.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/arguments.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/apps/temp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3
-creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/linebuffer.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/uncompress.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/universalopener.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files
-copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files
-byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign/__init__.py to __init__.cpython-313.pyc
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column_idx.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/column/column.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo/taxo.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/view.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view
+creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view
+copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.13_obitools3/build/obitools3/dms/obiseq.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms
+byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/version.py to version.cpython-313.pyc
+byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/optiongroups/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri/__init__.py to __init__.cpython-313.pyc
 byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign/solexapairend.py to solexapairend.cpython-313.pyc
+byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/libalign/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/__init__.py to __init__.cpython-313.pyc
 byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/format/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/uri/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/commands/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers/__init__.py to __init__.cpython-313.pyc
 byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/capi/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/__init__.py to __init__.cpython-313.pyc
 byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/typed_column/__init__.py to __init__.cpython-313.pyc
 byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/column/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/parsers/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/writers/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/apps/optiongroups/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/version.py to version.cpython-313.pyc
-byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/files/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/taxo/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.13/dist-packages/obitools3/dms/view/typed_view/__init__.py to __init__.cpython-313.pyc
 running install_egg_info
 running egg_info
 creating python/OBITools3.egg-info
@@ -1539,8 +1575,8 @@
    dh_shlibdeps -a -O--buildsystem=pybuild
 dpkg-shlibdeps: warning: can't extract name and version from library name 'libcobitools3.so'
 dpkg-shlibdeps: warning: can't extract name and version from library name 'libcobitools3.so'
-dpkg-shlibdeps: warning: symbol log used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries
 dpkg-shlibdeps: warning: symbol log10 used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries
+dpkg-shlibdeps: warning: symbol log used by debian/obitools/usr/lib/x86_64-linux-gnu/libcobitools3.so found in none of the libraries
    dh_installdeb -O--buildsystem=pybuild
    dh_gencontrol -O--buildsystem=pybuild
    dh_md5sums -O--buildsystem=pybuild
@@ -1554,12 +1590,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: not including original source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/1611740/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/1611740/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/653172 and its subdirectories
-I: Current time: Sat Mar 28 13:09:38 -12 2026
-I: pbuilder-time-stamp: 1774746578
+I: removing directory /srv/workspace/pbuilder/1611740 and its subdirectories
+I: Current time: Mon Feb 24 08:55:45 +14 2025
+I: pbuilder-time-stamp: 1740336945