Diff of the two buildlogs: -- --- b1/build.log 2024-05-11 07:53:41.657569599 +0000 +++ b2/build.log 2024-05-11 08:04:00.223181108 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri May 10 19:24:28 -12 2024 -I: pbuilder-time-stamp: 1715412268 +I: Current time: Sat Jun 14 04:16:45 +14 2025 +I: pbuilder-time-stamp: 1749824205 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying drop_deprecated_nisext_for_python3.12_compatibility.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1051209/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3245969/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 13 14:16 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3245969/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3245969/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='89702690a85b4ebeb1a3e737c073e3eb' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1051209' - PS1='# ' - PS2='> ' + INVOCATION_ID=2cb64153ff17463cbe60faee1335e6ff + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3245969 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Fv0b6cjZ/pbuilderrc_Hyak --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Fv0b6cjZ/b1 --logfile b1/build.log nibabel_5.2.1-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Fv0b6cjZ/pbuilderrc_qvoY --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Fv0b6cjZ/b2 --logfile b2/build.log nibabel_5.2.1-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 10 11:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1051209/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 10 17:46 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3245969/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -328,7 +360,7 @@ Get: 177 http://deb.debian.org/debian trixie/main amd64 python3-werkzeug all 3.0.2-1 [206 kB] Get: 178 http://deb.debian.org/debian trixie/main amd64 python3-pytest-httpserver all 1.0.10-1 [21.1 kB] Get: 179 http://deb.debian.org/debian trixie/main amd64 python3-texext all 0.6.7-5 [22.5 kB] -Fetched 124 MB in 10s (11.9 MB/s) +Fetched 124 MB in 1s (93.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) @@ -910,8 +942,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat May 11 07:27:19 UTC 2024. -Universal Time is now: Sat May 11 07:27:19 UTC 2024. +Local time is now: Fri Jun 13 14:17:36 UTC 2025. +Universal Time is now: Fri Jun 13 14:17:36 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1087,7 +1119,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/nibabel-5.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nibabel_5.2.1-1_source.changes +I: user script /srv/workspace/pbuilder/3245969/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3245969/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/nibabel-5.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../nibabel_5.2.1-1_source.changes dpkg-buildpackage: info: source package nibabel dpkg-buildpackage: info: source version 5.2.1-1 dpkg-buildpackage: info: source distribution unstable @@ -1104,8 +1140,8 @@ make[1]: Entering directory '/build/reproducible-path/nibabel-5.2.1' /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/nibabel-5.2.1' -/bin/sh: 1: python: not found -/bin/sh: 1: git: not found +/bin/sh: line 1: python: command not found +/bin/sh: line 1: git: command not found /usr/bin/make -C doc clean make[3]: Entering directory '/build/reproducible-path/nibabel-5.2.1/doc' rm -rf source/reference/*.rst @@ -1327,17 +1363,17 @@ /usr/share/sphinx/scripts/python3/sphinx-build -b html -d ../build/doctrees source ../build/html Running Sphinx v7.2.6 loading intersphinx inventory from https://docs.python.org/3/objects.inv... -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv... -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) loading intersphinx inventory from https://docs.scipy.org/doc/scipy/objects.inv... -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) loading intersphinx inventory from https://matplotlib.org/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 127 source files that are out of date @@ -1402,10 +1438,10 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/nibabel-5.2.1' PYBUILD_SYSTEM=custom \ -PYBUILD_TEST_ARGS="PATH={dir}/.pybuild/cpython3_{version}/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PYTHONPATH={build_dir} LC_ALL=C.UTF-8 {interpreter} -m pytest --verbose" \ +PYBUILD_TEST_ARGS="PATH={dir}/.pybuild/cpython3_{version}/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PYTHONPATH={build_dir} LC_ALL=C.UTF-8 {interpreter} -m pytest --verbose" \ dh_auto_test dh_auto_test: warning: warning: pybuild does not support building out of source tree. In source building enforced. -I: pybuild base:311: PATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.12/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PYTHONPATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.12/build LC_ALL=C.UTF-8 python3.12 -m pytest --verbose +I: pybuild base:311: PATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.12/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PYTHONPATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.12/build LC_ALL=C.UTF-8 python3.12 -m pytest --verbose ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache @@ -7099,8 +7135,8 @@ if checker(have_version) < checker(version): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -= 5345 passed, 96 skipped, 40 xfailed, 4 xpassed, 3062 warnings in 498.01s (0:08:18) = -I: pybuild base:311: PATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.11/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PYTHONPATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.11/build LC_ALL=C.UTF-8 python3.11 -m pytest --verbose += 5345 passed, 96 skipped, 40 xfailed, 4 xpassed, 3062 warnings in 159.23s (0:02:39) = +I: pybuild base:311: PATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.11/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PYTHONPATH=/build/reproducible-path/nibabel-5.2.1/.pybuild/cpython3_3.11/build LC_ALL=C.UTF-8 python3.11 -m pytest --verbose ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.11 cachedir: .pytest_cache @@ -12761,17 +12797,12 @@ /build/reproducible-path/nibabel-5.2.1/nibabel/tests/test_scaling.py:133: RuntimeWarning: invalid value encountered in cast assert_array_equal(data_back, [np.array(np.nan).astype(np.int32), 99]) -nibabel/tests/test_volumeutils.py::test__ftype4scaled_finite_warningfilters -nibabel/tests/test_volumeutils.py::test__ftype4scaled_finite_warningfilters - /build/reproducible-path/nibabel-5.2.1/nibabel/volumeutils.py:1174: RuntimeWarning: overflow encountered in multiply - tst_trans = tst_trans * slope - nisext/tests/test_sexts.py: 18 warnings /build/reproducible-path/nibabel-5.2.1/nisext/sexts.py:199: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if checker(have_version) < checker(version): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -= 5351 passed, 96 skipped, 35 xfailed, 3 xpassed, 269 warnings in 514.40s (0:08:34) = += 5351 passed, 96 skipped, 35 xfailed, 3 xpassed, 267 warnings in 258.73s (0:04:18) = make[1]: Leaving directory '/build/reproducible-path/nibabel-5.2.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild -O--builddirectory=build @@ -12832,8 +12863,8 @@ dh_gencontrol -O--buildsystem=pybuild -O--builddirectory=build dh_md5sums -O--buildsystem=pybuild -O--builddirectory=build dh_builddeb -O--buildsystem=pybuild -O--builddirectory=build -dpkg-deb: building package 'python-nibabel-doc' in '../python-nibabel-doc_5.2.1-1_all.deb'. dpkg-deb: building package 'python3-nibabel' in '../python3-nibabel_5.2.1-1_all.deb'. +dpkg-deb: building package 'python-nibabel-doc' in '../python-nibabel-doc_5.2.1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../nibabel_5.2.1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../nibabel_5.2.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -12842,12 +12873,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3245969/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3245969/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1051209 and its subdirectories -I: Current time: Fri May 10 19:53:40 -12 2024 -I: pbuilder-time-stamp: 1715414020 +I: removing directory /srv/workspace/pbuilder/3245969 and its subdirectories +I: Current time: Sat Jun 14 04:26:57 +14 2025 +I: pbuilder-time-stamp: 1749824817