Diff of the two buildlogs: -- --- b1/build.log 2024-04-30 21:51:42.050622282 +0000 +++ b2/build.log 2024-04-30 23:48:48.403577765 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Apr 30 08:06:30 -12 2024 -I: pbuilder-time-stamp: 1714507590 +I: Current time: Tue Jun 3 18:14:47 +14 2025 +I: pbuilder-time-stamp: 1748924087 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -26,51 +26,83 @@ dpkg-source: info: unpacking ncbi-igblast_1.19.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3296776/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3331416/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 3 04:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3331416/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3331416/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='75707fab648e46628e8a02c366ace3dd' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3296776' - PS1='# ' - PS2='> ' + INVOCATION_ID=5cef8b68a9f2494c861878f4944d01ff + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3331416 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rCnH2dMW/pbuilderrc_olRH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rCnH2dMW/b1 --logfile b1/build.log ncbi-igblast_1.19.0-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rCnH2dMW/pbuilderrc_AnBs --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rCnH2dMW/b2 --logfile b2/build.log ncbi-igblast_1.19.0-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.1.0-20-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 23 11:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3296776/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 24 13:34 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3331416/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -139,7 +171,7 @@ Get: 29 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 time amd64 1.9-0.2 [50.8 kB] -Fetched 19.1 MB in 0s (39.3 MB/s) +Fetched 19.1 MB in 3s (5870 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19901 files and directories currently installed.) @@ -278,7 +310,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ncbi-igblast-1.19.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ncbi-igblast_1.19.0-1_source.changes +I: user script /srv/workspace/pbuilder/3331416/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3331416/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ncbi-igblast-1.19.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ncbi-igblast_1.19.0-1_source.changes dpkg-buildpackage: info: source package ncbi-igblast dpkg-buildpackage: info: source version 1.19.0-1 dpkg-buildpackage: info: source distribution unstable @@ -785,7 +821,7 @@ checking for libungif... no checking for libXpm... no checking for freetype-config... no -./src/build-system/configure: line 29564: cd: /nonexistent/first-build: No such file or directory +/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/build-system/configure: line 29564: cd: /nonexistent/second-build: No such file or directory checking for libftgl... no checking for libmagic... no checking for libmimetic... no @@ -821,217 +857,217 @@ configure: ...done configure: updating cache config.cache configure: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/config.status -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/seqmasks_io/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/services/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/services/unit_test/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/seqdb_writer/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/seqdb_writer/unit_test/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/blastdb_format/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/blastdb_format/unit_test/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/gene_info_reader/demo/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/gene_info_reader/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/gene_info_reader/unit_test/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/cgi/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/serial/datatool/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/serial/grpc_integration/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/serial/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/db/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/db/sqlite/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/corelib/ncbicfg.c +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/corelib/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/corelib/Makefile.precompile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/alnmgr/Makefile config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/seqdb_reader/test/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/seqdb_reader/demo/Makefile config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/seqdb_reader/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/align_format/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/align_format/unit_test/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/alnmgr/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/logging/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/readers/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/pubseq_gateway/cache/test/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/pubseq_gateway/cache/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/pubseq_gateway/diag/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/pubseq_gateway/protobuf/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/seqdb_reader/demo/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/gene_info_reader/unit_test/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/gene_info_reader/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/gene_info_reader/demo/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/blastdb_format/unit_test/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/blastdb_format/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/services/unit_test/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/services/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/seqdb_writer/unit_test/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/seqdb_writer/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/data_loaders/genbank/gicache/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/data_loaders/genbank/id1/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/data_loaders/genbank/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/data_loaders/genbank/cache/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/data_loaders/genbank/id2/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/data_loaders/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/data_loaders/blastdb/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/format/Makefile config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/pubseq_gateway/client/test/Makefile config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/pubseq_gateway/client/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/pubseq_gateway/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/pubseq_gateway/protobuf/Makefile config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/pubseq_gateway/cassandra/test/Makefile config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/pubseq_gateway/cassandra/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/api/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/espell/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/egquery/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/ehistory/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/pubseq_gateway/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/pubseq_gateway/cache/test/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/pubseq_gateway/cache/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/pubseq_gateway/diag/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/logging/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/readers/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/edit/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/uilist/Makefile config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/epost/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/linkout/Makefile config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/esummary/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/uilist/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/linkout/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/esearch/Makefile config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/einfo/Makefile config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/Makefile -config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/esearch/Makefile config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/efetch/test/Makefile config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/efetch/Makefile +config.status: creating 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/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/connect/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/connect/services/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/Makefile +config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/html/Makefile config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/./Makefile config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc/common/ncbi_build_ver.h config.status: creating /build/reproducible-path/ncbi-igblast-1.19.0/c++/include/common/ncbi_revision.h @@ -1046,21 +1082,21 @@ gcc -c -g -O2 -DNCBI_APP_BUILT_AS=run_with_lock /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o gcc run_with_lock.o -L/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib -lm -o run_with_lock strip run_with_lock -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin /bin/ln -f run_with_lock /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/run_with_lock make[3]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/build-system/helpers' make[2]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/build-system/helpers' Prebuilt project_tree_builder not found -/bin/bash: line 1: ps: command not found -/bin/bash: line 1: ps: command not found -/bin/bash: line 1: ps: command not found -/bin/bash: line 1: ps: command not found -/bin/bash: line 1: ps: command not found -/bin/bash: line 1: ps: command not found -/bin/bash: line 1: ps: command not found -/bin/bash: line 1: ps: command not found -/bin/bash: line 1: ps: command not found -/bin/bash: line 1: ps: command not found +/bin/sh: line 1: ps: command not found +/bin/sh: line 1: ps: command not found +/bin/sh: line 1: ps: command not found +/bin/sh: line 1: ps: command not found +/bin/sh: line 1: ps: command not found +/bin/sh: line 1: ps: command not found +/bin/sh: line 1: ps: command not found +/bin/sh: line 1: ps: command not found +/bin/sh: line 1: ps: command not found +/bin/sh: line 1: ps: command not found =============================================================================== NCBI C++ Toolkit documentation: Online: https://www.ncbi.nlm.nih.gov/toolkit/doc/book/ @@ -1814,7 +1850,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/corelib/ncbi_pool_balancer.cpp -o ncbi_pool_balancer.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o ncbi_dbsvcmapper.o ncbi_pool_balancer.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxncbi.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxncbi.a /bin/ln -f .xncbi.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xncbi.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/corelib' @@ -1935,7 +1971,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libtest_mt.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libtest_mt.a /bin/ln -f .test_mt.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.test_mt.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/corelib' @@ -2205,7 +2241,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/crc32_sse.cpp -o crc32_sse.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o crc32_sse.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxutil.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxutil.a /bin/ln -f .xutil.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xutil.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util' @@ -2274,7 +2310,7 @@ /usr/bin/gcc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/regexp -DHAVE_CONFIG_H -DPCRE_NO_UTF16 -DPCRE_NO_UTF32 -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/regexp/pcreposix.c -o pcreposix.o /bin/rm -f libregexp.a .libregexp.a.stamp ar cr libregexp.a pcre_byte_order.o pcre_chartables.o pcre_compile.o pcre_config.o pcre_dfa_exec.o pcre_exec.o pcre_fullinfo.o pcre_get.o pcre_globals.o pcre_jit_compile.o pcre_maketables.o pcre_newline.o pcre_ord2utf8.o pcre_refcount.o pcre_string_utils.o pcre_study.o pcre_tables.o pcre_ucd.o pcre_valid_utf8.o pcre_version.o pcre_xclass.o pcreposix.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libregexp.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libregexp.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libregexp.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libregexp.a /bin/ln -f .regexp.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.regexp.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/regexp' @@ -2286,7 +2322,7 @@ /usr/bin/gcc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/regexp -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/regexp/.. -DHAVE_CONFIG_H -DSUPPORT_PCRE8 -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -DNCBI_APP_BUILT_AS=test_pcre /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/regexp/pcre_printint.c -o pcre_printint.o /usr/bin/g++ -std=gnu++17 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -Wl,-z,relro -O2 pcretest.o pcre_printint.o -L/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib -lregexp -o test_pcre strip test_pcre -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f test_pcre /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f test_pcre /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin /bin/ln -f test_pcre /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/test_pcre make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/regexp' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/regexp' @@ -2314,18 +2350,17 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/regexp -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/regexp /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/xregexp/convert_dates_iso8601.cpp -o convert_dates_iso8601.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o convert_dates_iso8601.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxregexp.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxregexp.a /bin/ln -f .xregexp.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xregexp.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/xregexp' -/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/run_with_lock: Unable to rename log file make_xregexp.log.new: No such file or directory. /usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/xregexp TMPL=xregexp_template_tester -w all make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/xregexp' Updating dependency information for /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/xregexp/regexp_template_tester.cpp. /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxregexp_template_tester.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xregexp_template_tester.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/xregexp' @@ -2357,7 +2392,7 @@ /usr/bin/gcc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/bzip2 /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/compress/bzip2/bzlib.c -o bzlib.o /bin/rm -f libbz2.a .libbz2.a.stamp ar cr libbz2.a blocksort.o huffman.o crctable.o randtable.o ncbi_bz2_compress.o decompress.o bzlib.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbz2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbz2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libbz2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libbz2.a /bin/ln -f .bz2.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.bz2.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/compress/bzip2' @@ -2402,7 +2437,7 @@ /usr/bin/gcc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/zlib /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/compress/zlib/gzwrite.c -o gzwrite.o /bin/rm -f libz.a .libz.a.stamp ar cr libz.a adler32.o crc32.o deflate.o infback.o inffast.o inflate.o inftrees.o trees.o zutil.o ncbi_z_compress.o uncompr.o gzclose.o gzlib.o gzread.o gzwrite.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libz.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libz.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libz.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libz.a /bin/ln -f .z.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.z.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/compress/zlib' @@ -2441,7 +2476,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/zlib -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/zlib -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/bzip2 -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/bzip2 /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxcompress.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxcompress.a /bin/ln -f .xcompress.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xcompress.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/compress/api' @@ -2469,7 +2504,7 @@ /usr/bin/gcc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libtables.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libtables.a /bin/ln -f .tables.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.tables.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/tables' @@ -2499,7 +2534,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libsequtil.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libsequtil.a /bin/ln -f .sequtil.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.sequtil.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/sequtil' @@ -2651,7 +2686,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/qparse/parse_utils.cpp -o parse_utils.o /bin/rm -f libxqueryparse.a .libxqueryparse.a.stamp ar cr libxqueryparse.a query_parse.o parser.o query_tree_print.o query_exec.o parse_utils.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxqueryparse.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxqueryparse.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxqueryparse.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxqueryparse.a /bin/ln -f .xqueryparse.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xqueryparse.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/qparse' @@ -2675,7 +2710,7 @@ /usr/bin/gcc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/lmdb /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/lmdb/midl.c -o midl.o /bin/rm -f liblmdb.a .liblmdb.a.stamp ar cr liblmdb.a mdb.o midl.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblmdb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblmdb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f liblmdb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/liblmdb.a /bin/ln -f .lmdb.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.lmdb.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/lmdb' @@ -2685,7 +2720,7 @@ /usr/bin/gcc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/lmdb -DNCBI_APP_BUILT_AS=lmdb_test1 /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/lmdb/mtest.c -o mtest.o /usr/bin/g++ -std=gnu++17 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -Wl,-z,relro -O2 mtest.o -L/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib -llmdb -lpthread -o lmdb_test1 strip lmdb_test1 -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdb_test1 /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdb_test1 /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin /bin/ln -f lmdb_test1 /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/lmdb_test1 make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/lmdb' /usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/lmdb TMPL=lmdb_test2 -w all @@ -2694,7 +2729,7 @@ /usr/bin/gcc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/lmdb -DNCBI_APP_BUILT_AS=lmdb_test2 /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/lmdb/mtest2.c -o mtest2.o /usr/bin/g++ -std=gnu++17 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -Wl,-z,relro -O2 mtest2.o -L/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib -llmdb -lpthread -o lmdb_test2 strip lmdb_test2 -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdb_test2 /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdb_test2 /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin /bin/ln -f lmdb_test2 /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/lmdb_test2 make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/lmdb' /usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/lmdb TMPL=lmdb_test3 -w all @@ -2703,7 +2738,7 @@ /usr/bin/gcc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/lmdb -DNCBI_APP_BUILT_AS=lmdb_test3 /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/lmdb/mtest3.c -o mtest3.o /usr/bin/g++ -std=gnu++17 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -Wl,-z,relro -O2 mtest3.o -L/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib -llmdb -lpthread -o lmdb_test3 strip lmdb_test3 -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdb_test3 /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdb_test3 /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin /bin/ln -f lmdb_test3 /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/lmdb_test3 make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/lmdb' /usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/lmdb TMPL=lmdb_test4 -w all @@ -2712,7 +2747,7 @@ /usr/bin/gcc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/lmdb -DNCBI_APP_BUILT_AS=lmdb_test4 /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/lmdb/mtest4.c -o mtest4.o /usr/bin/g++ -std=gnu++17 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -Wl,-z,relro -O2 mtest4.o -L/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib -llmdb -lpthread -o lmdb_test4 strip lmdb_test4 -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdb_test4 /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdb_test4 /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin /bin/ln -f lmdb_test4 /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/lmdb_test4 make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/lmdb' /usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/lmdb TMPL=lmdb_test5 -w all @@ -2721,7 +2756,7 @@ /usr/bin/gcc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/lmdb -DNCBI_APP_BUILT_AS=lmdb_test5 /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/lmdb/mtest5.c -o mtest5.o /usr/bin/g++ -std=gnu++17 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -Wl,-z,relro -O2 mtest5.o -L/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib -llmdb -lpthread -o lmdb_test5 strip lmdb_test5 -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdb_test5 /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdb_test5 /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin /bin/ln -f lmdb_test5 /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/lmdb_test5 make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/lmdb' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/lmdb' @@ -2734,7 +2769,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/lmdbxx -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/lmdb -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/lmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -DNCBI_APP_BUILT_AS=lmdbxx_sample /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/lmdbxx/example.cpp -o example.o /usr/bin/g++ -std=gnu++17 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -Wl,-z,relro -O2 example.o -L/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib -llmdb -lxncbi -lpthread -lm -o lmdbxx_sample strip lmdbxx_sample -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin /bin/ln -f lmdbxx_sample /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/lmdbxx_sample make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/lmdbxx' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/lmdbxx' @@ -2756,7 +2791,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/util/profile/rtprofile.cpp -o rtprofile.o /bin/rm -f libutrtprof.a .libutrtprof.a.stamp ar cr libutrtprof.a rtprofile.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libutrtprof.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libutrtprof.a /bin/ln -f .utrtprof.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.utrtprof.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/util/profile' @@ -3006,7 +3041,7 @@ /usr/bin/gcc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/connect/mbedtls/ssl_tls13_keys.c -o mbedtls/ssl_tls13_keys.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libconnssl.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libconnssl.a /bin/ln -f .connssl.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.connssl.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/connect' @@ -3194,7 +3229,7 @@ /usr/bin/gcc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/connect/ncbi_lbdns.c -o ncbi_lbdns.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_dispd.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libconnect.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libconnect.a /bin/ln -f .connect.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.connect.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/connect' @@ -3464,7 +3499,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/connect/mbedtls -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/connect/connect_misc.cpp -o connect_misc.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxxconnect.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xxconnect.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/connect' @@ -3472,7 +3507,7 @@ make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_dispd.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxconnect.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxconnect.a /bin/ln -f .xconnect.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xconnect.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/connect' @@ -3507,7 +3542,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxthrserv.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xthrserv.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/connect' @@ -4927,7 +4962,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxconnserv.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xconnserv.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/connect/services' @@ -4937,7 +4972,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp ar cr libncbi_xcache_netcache.a neticache_client.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libncbi_xcache_netcache.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.ncbi_xcache_netcache.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/connect/services' @@ -4947,7 +4982,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libncbi_xblobstorage_netcache.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.ncbi_xblobstorage_netcache.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/connect/services' @@ -5904,7 +5939,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxcgi.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxcgi.a /bin/ln -f .xcgi.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xcgi.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/cgi' @@ -6043,7 +6078,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -DNCBI_XFCGI_EXPORTS /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxfcgi.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xfcgi.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/cgi' @@ -6098,7 +6133,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxhtml.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxhtml.a /bin/ln -f .xhtml.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xhtml.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/html' @@ -8841,7 +8876,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/g++ -std=gnu++17 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -Wl,-z,relro -O2 file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -L/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib -lxutil -lxncbi -lxregexp -lregexp -lm -o project_tree_builder strip project_tree_builder -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin /bin/ln -f project_tree_builder /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/project_tree_builder make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/build-system/project_tree_builder' /usr/bin/make -C msbuild -w all_r || exit 5 @@ -8981,7 +9016,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxser.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxser.a /bin/ln -f .xser.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xser.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/serial' @@ -8993,7 +9028,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxcser.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxcser.a /bin/ln -f .xcser.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xcser.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/serial' @@ -10100,7 +10135,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/g++ -std=gnu++17 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -Wl,-z,relro -O2 datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -L/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib -lxser -lxutil -lxncbi -lm -o datatool strip datatool -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin /bin/ln -f datatool /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/datatool make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/serial/datatool' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/serial/datatool' @@ -10232,7 +10267,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/serial/grpc_integration/grpc_integration.cpp -o grpc_integration.o /bin/rm -f libgrpc_integration.a .libgrpc_integration.a.stamp ar cr libgrpc_integration.a grpc_integration.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgrpc_integration.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgrpc_integration.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libgrpc_integration.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libgrpc_integration.a /bin/ln -f .grpc_integration.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.grpc_integration.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/serial/grpc_integration' @@ -10490,7 +10525,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libdbapi.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libdbapi.a /bin/ln -f .dbapi.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.dbapi.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/dbapi' @@ -10811,7 +10846,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libdbapi_driver.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.dbapi_driver.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/dbapi/driver' @@ -11429,7 +11464,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libgeneral.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libgeneral.a /bin/ln -f .general.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.general.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/general' @@ -11463,7 +11498,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libbiblio.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libbiblio.a /bin/ln -f .biblio.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.biblio.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/biblio' @@ -11489,7 +11524,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libmedline.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libmedline.a /bin/ln -f .medline.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.medline.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/medline' @@ -11515,7 +11550,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libpub.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libpub.a /bin/ln -f .pub.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.pub.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/pub' @@ -11541,7 +11576,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libseqcode.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libseqcode.a /bin/ln -f .seqcode.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.seqcode.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/seqcode' @@ -11737,7 +11772,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/seq -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libseq.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libseq.a /bin/ln -f .seq.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.seq.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/seq' @@ -11775,7 +11810,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libseqset.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libseqset.a /bin/ln -f .seqset.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.seqset.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/seqset' @@ -11804,7 +11839,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libsubmit.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libsubmit.a /bin/ln -f .submit.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.submit.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/submit' @@ -11830,7 +11865,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libseqedit.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libseqedit.a /bin/ln -f .seqedit.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.seqedit.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/seqedit' @@ -11856,7 +11891,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libseqsplit.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.seqsplit.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/seqsplit' @@ -11891,7 +11926,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libid1.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libid1.a /bin/ln -f .id1.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.id1.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/id1' @@ -11903,7 +11938,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libid1cli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libid1cli.a /bin/ln -f .id1cli.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.id1cli.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/id1' @@ -11938,7 +11973,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libid2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libid2.a /bin/ln -f .id2.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.id2.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/id2' @@ -11950,7 +11985,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libid2cli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libid2cli.a /bin/ln -f .id2cli.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.id2cli.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/id2' @@ -11986,7 +12021,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libentrez2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libentrez2.a /bin/ln -f .entrez2.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.entrez2.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/entrez2' @@ -11998,7 +12033,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libentrez2cli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.entrez2cli.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/entrez2' @@ -12028,7 +12063,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libpubmed.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libpubmed.a /bin/ln -f .pubmed.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.pubmed.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/pubmed' @@ -12054,7 +12089,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libmedlars.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libmedlars.a /bin/ln -f .medlars.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.medlars.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/medlars' @@ -12085,7 +12120,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libmla.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libmla.a /bin/ln -f .mla.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.mla.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/mla' @@ -12097,7 +12132,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libmlacli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libmlacli.a /bin/ln -f .mlacli.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.mlacli.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/mla' @@ -12124,7 +12159,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libproj.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libproj.a /bin/ln -f .proj.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.proj.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/proj' @@ -12150,7 +12185,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libscoremat.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libscoremat.a /bin/ln -f .scoremat.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.scoremat.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/scoremat' @@ -12183,7 +12218,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxnetblast.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xnetblast.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/blast' @@ -12195,7 +12230,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxnetblastcli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xnetblastcli.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/blast' @@ -12222,7 +12257,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libblastdb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libblastdb.a /bin/ln -f .blastdb.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.blastdb.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/blastdb' @@ -12248,7 +12283,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libblastxml.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libblastxml.a /bin/ln -f .blastxml.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.blastxml.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/blastxml' @@ -12274,7 +12309,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libblastxml2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.blastxml2.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/blastxml2' @@ -12330,7 +12365,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/mmdb -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libmmdb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libmmdb.a /bin/ln -f .mmdb.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.mmdb.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/mmdb' @@ -12356,7 +12391,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libcn3d.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libcn3d.a /bin/ln -f .cn3d.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.cn3d.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/cn3d' @@ -12382,7 +12417,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libcdd.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libcdd.a /bin/ln -f .cdd.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.cdd.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/cdd' @@ -12412,7 +12447,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libncbimime.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libncbimime.a /bin/ln -f .ncbimime.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.ncbimime.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/ncbimime' @@ -12441,7 +12476,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libpcsubstance.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.pcsubstance.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/pcsubstance' @@ -12467,7 +12502,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libpcassay.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libpcassay.a /bin/ln -f .pcassay.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.pcassay.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/pcassay' @@ -12498,7 +12533,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/pcassay2/pcassay2___.cpp -o pcassay2___.o /bin/rm -f libpcassay2.a .libpcassay2.a.stamp ar cr libpcassay2.a pcassay2__.o pcassay2___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libpcassay2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libpcassay2.a /bin/ln -f .pcassay2.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.pcassay2.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/pcassay2' @@ -12524,7 +12559,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libgbseq.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libgbseq.a /bin/ln -f .gbseq.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.gbseq.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/gbseq' @@ -12550,7 +12585,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libinsdseq.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libinsdseq.a /bin/ln -f .insdseq.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.insdseq.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/insdseq' @@ -12576,7 +12611,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libtinyseq.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.tinyseq.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/tinyseq' @@ -12602,7 +12637,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libbiotree.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libbiotree.a /bin/ln -f .biotree.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.biotree.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/biotree' @@ -12641,7 +12676,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libentrezgene.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.entrezgene.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/entrezgene' @@ -12670,7 +12705,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libomssa.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libomssa.a /bin/ln -f .omssa.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.omssa.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/omssa' @@ -12701,7 +12736,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libremap.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libremap.a /bin/ln -f .remap.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.remap.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/remap' @@ -12713,7 +12748,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libremapcli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libremapcli.a /bin/ln -f .remapcli.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.remapcli.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/remap' @@ -12740,7 +12775,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libseqtest.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libseqtest.a /bin/ln -f .seqtest.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.seqtest.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/seqtest' @@ -12785,7 +12820,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libtaxon1.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libtaxon1.a /bin/ln -f .taxon1.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.taxon1.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/taxon1' @@ -12820,7 +12855,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libtaxon3.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libtaxon3.a /bin/ln -f .taxon3.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.taxon3.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/taxon3' @@ -12851,7 +12886,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libgbproj.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libgbproj.a /bin/ln -f .gbproj.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.gbproj.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/gbproj' @@ -12888,7 +12923,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libtrackmgr.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.trackmgr.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/trackmgr' @@ -13010,7 +13045,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libtrackmgrcli.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.trackmgrcli.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/trackmgr' @@ -13043,7 +13078,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libvalerr.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libvalerr.a /bin/ln -f .valerr.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.valerr.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/valerr' @@ -13069,7 +13104,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libvalid.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libvalid.a /bin/ln -f .valid.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.valid.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/valid' @@ -13095,7 +13130,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libaccess.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libaccess.a /bin/ln -f .access.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.access.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/access' @@ -13121,7 +13156,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libdocsum.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libdocsum.a /bin/ln -f .docsum.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.docsum.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/docsum' @@ -13147,7 +13182,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libfeatdef.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libfeatdef.a /bin/ln -f .featdef.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.featdef.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/featdef' @@ -13169,7 +13204,7 @@ make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/genomecoll' cd /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/genomecoll && /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/new_module.sh gencoll_client all Waiting for /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/genomecoll/make_asn.lock. -Acquired /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/genomecoll/make_asn.lock for PID 4033140 (make_asn) +Acquired /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/genomecoll/make_asn.lock for PID 4182372 (make_asn) /usr/bin/make -w -f /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/reproducible-path/ncbi-igblast-1.19.0/c++ builddir=/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build DATATOOL=/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-igblast-1.19.0/c++/src all make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/genomecoll' /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/datatool -oR /build/reproducible-path/ncbi-igblast-1.19.0/c++ \ @@ -13199,7 +13234,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libgenome_collection.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.genome_collection.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/genomecoll' @@ -13239,7 +13274,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libhomologene.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libhomologene.a /bin/ln -f .homologene.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.homologene.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/homologene' @@ -13265,7 +13300,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libmim.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libmim.a /bin/ln -f .mim.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.mim.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/mim' @@ -13291,7 +13326,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libobjprt.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libobjprt.a /bin/ln -f .objprt.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.objprt.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/objprt' @@ -13322,7 +13357,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libvariation.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libvariation.a /bin/ln -f .variation.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.variation.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/variation' @@ -13379,7 +13414,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libmacro.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libmacro.a /bin/ln -f .macro.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.macro.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/macro' @@ -13408,7 +13443,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libgenesbyloc.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.genesbyloc.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/genesbyloc' @@ -13439,7 +13474,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libobjcoords.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libobjcoords.a /bin/ln -f .objcoords.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.objcoords.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/coords' @@ -13470,7 +13505,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libvarrep.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libvarrep.a /bin/ln -f .varrep.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.varrep.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/varrep' @@ -13505,7 +13540,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp -o search_by_rsid___.o /bin/rm -f libsearchbyrsid.a .libsearchbyrsid.a.stamp ar cr libsearchbyrsid.a search_by_rsid__.o search_by_rsid___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsearchbyrsid.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsearchbyrsid.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libsearchbyrsid.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libsearchbyrsid.a /bin/ln -f .searchbyrsid.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.searchbyrsid.dep make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/variation_libs/dbsnp/search_by_rsid' @@ -13536,7 +13571,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp -o dbsnp_tooltip_service___.o /bin/rm -f libdbsnp_tooltip_service.a .libdbsnp_tooltip_service.a.stamp ar cr libdbsnp_tooltip_service.a dbsnp_tooltip_service__.o dbsnp_tooltip_service___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_tooltip_service.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_tooltip_service.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libdbsnp_tooltip_service.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libdbsnp_tooltip_service.a /bin/ln -f .dbsnp_tooltip_service.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.dbsnp_tooltip_service.dep make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/variation_libs/dbsnp/tooltip_service' @@ -13575,7 +13610,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNCBI_DBSNP_PTIS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objects/dbsnp/primary_track/snpptis.cpp -o snpptis.o /bin/rm -f libdbsnp_ptis.a .libdbsnp_ptis.a.stamp ar cr libdbsnp_ptis.a dbsnp.pb.wrapper.o dbsnp.grpc.pb.wrapper.o snpptis.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_ptis.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_ptis.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libdbsnp_ptis.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libdbsnp_ptis.a /bin/ln -f .dbsnp_ptis.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.dbsnp_ptis.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objects/dbsnp/primary_track' @@ -13753,7 +13788,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxobjmgr.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xobjmgr.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objmgr' @@ -13918,7 +13953,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxobjutil.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xobjutil.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objmgr/util' @@ -13962,7 +13997,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/zlib -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/zlib -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/bzip2 -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/bzip2 /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libid2_split.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libid2_split.a /bin/ln -f .id2_split.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.id2_split.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objmgr/split' @@ -14040,7 +14075,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/logging/listener.cpp -o listener.o /bin/rm -f libxlogging.a .libxlogging.a.stamp ar cr libxlogging.a message.o listener.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxlogging.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxlogging.a /bin/ln -f .xlogging.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xlogging.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/logging' @@ -14996,7 +15031,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -Wno-unused-local-typedefs -DBOOST_DISABLE_THREADS /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.a .libxobjread.a.stamp ar cr libxobjread.a reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxobjread.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxobjread.a /bin/ln -f .xobjread.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xobjread.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/readers' @@ -15350,7 +15385,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/readers/source_mod_parser_wrapper.cpp -o source_mod_parser_wrapper.o /bin/rm -f libxobjreadex.a .libxobjreadex.a.stamp ar cr libxobjreadex.a glimmer_reader.o idmapper.o idmapper_builtin.o idmapper_config.o idmapper_database.o idmapper_gcassembly.o idmapper_scope.o source_mod_parser_wrapper.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjreadex.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjreadex.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxobjreadex.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxobjreadex.a /bin/ln -f .xobjreadex.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xobjreadex.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/readers' @@ -15452,7 +15487,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/lmdb -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/lmdb /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libseqdb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libseqdb.a /bin/ln -f .seqdb.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.seqdb.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/seqdb_reader' @@ -15464,7 +15499,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /usr/bin/g++ -std=gnu++17 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -Wl,-z,relro -O2 seqdb_demo.o -L/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lresolv -lm -o seqdb_demo strip seqdb_demo -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin /bin/ln -f seqdb_demo /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/seqdb_demo make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/seqdb_reader/demo' make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/seqdb_reader/demo' @@ -15607,7 +15642,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/bin/g++ -std=gnu++17 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -Wl,-z,relro -O2 seqdb_perf.o -L/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lresolv -lpthread -lm -o seqdb_perf strip seqdb_perf -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin /bin/ln -f seqdb_perf /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/seqdb_perf make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/seqdb_reader/test' make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/seqdb_reader/test' @@ -15703,7 +15738,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/lmdb -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/lmdb /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libwritedb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libwritedb.a /bin/ln -f .writedb.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.writedb.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/seqdb_writer' @@ -15732,7 +15767,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libgene_info.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libgene_info.a /bin/ln -f .gene_info.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.gene_info.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/gene_info_reader' @@ -15854,7 +15889,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /usr/bin/g++ -std=gnu++17 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -Wl,-z,relro -O2 gene_info_reader_app.o -L/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lresolv -lpthread -lm -o gene_info_reader strip gene_info_reader -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin /bin/ln -f gene_info_reader /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/gene_info_reader make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/gene_info_reader/demo' make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/gene_info_reader/demo' @@ -15882,7 +15917,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libblast_services.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libblast_services.a /bin/ln -f .blast_services.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.blast_services.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/services' @@ -15950,7 +15985,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libblastdb_format.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.blastdb_format.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/blast/blastdb_format' @@ -16013,7 +16048,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o /bin/rm -f libpsg_client.a .libpsg_client.a.stamp ar cr libpsg_client.a psg_client.o psg_client_transport.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libpsg_client.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libpsg_client.a /bin/ln -f .psg_client.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.psg_client.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/pubseq_gateway/client' @@ -16133,7 +16168,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.ncbi_xreader.dep make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/data_loaders/genbank' @@ -16371,7 +16406,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/zlib -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/zlib -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/bzip2 -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/bzip2 /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libncbi_xloader_genbank.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libncbi_xloader_genbank.a /bin/ln -f .ncbi_xloader_genbank.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.ncbi_xloader_genbank.dep make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/data_loaders/genbank' @@ -16390,7 +16425,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/zlib -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/zlib -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/bzip2 -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/bzip2 /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libncbi_xreader_cache.a /bin/ln -f .ncbi_xreader_cache.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.ncbi_xreader_cache.dep make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/data_loaders/genbank/cache' @@ -16410,7 +16445,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/zlib -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/zlib /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libncbi_xreader_id2.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libncbi_xreader_id2.a /bin/ln -f .ncbi_xreader_id2.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.ncbi_xreader_id2.dep make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/data_loaders/genbank/id2' @@ -16427,7 +16462,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/zlib -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/zlib -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/bzip2 -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/compress/bzip2 /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libncbi_xreader_id1.a /bin/ln -f .ncbi_xreader_id1.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.ncbi_xreader_id1.dep make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/data_loaders/genbank/id1' @@ -16468,7 +16503,7 @@ /usr/bin/gcc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/lmdb -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/lmdb -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libncbi_xreader_gicache.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libncbi_xreader_gicache.a /bin/ln -f .ncbi_xreader_gicache.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.ncbi_xreader_gicache.dep make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/data_loaders/genbank/gicache' @@ -16505,7 +16540,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libncbi_xloader_blastdb.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.ncbi_xloader_blastdb.dep make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/data_loaders/blastdb' @@ -16517,7 +16552,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.ncbi_xloader_blastdb_rmt.dep make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/data_loaders/blastdb' @@ -16548,7 +16583,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxobjsimple.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xobjsimple.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/simple' @@ -16685,7 +16720,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxalnmgr.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xalnmgr.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/alnmgr' @@ -16734,7 +16769,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/eutils/egquery/egquery___.cpp -o egquery___.o /bin/rm -f libegquery.a .libegquery.a.stamp ar cr libegquery.a egquery__.o egquery___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libegquery.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libegquery.a /bin/ln -f .egquery.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.egquery.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/egquery' @@ -16766,7 +16801,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/eutils/elink/elink___.cpp -o elink___.o /bin/rm -f libelink.a .libelink.a.stamp ar cr libelink.a elink__.o elink___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libelink.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libelink.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libelink.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libelink.a /bin/ln -f .elink.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.elink.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/elink' @@ -16798,7 +16833,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o /bin/rm -f libepost.a .libepost.a.stamp ar cr libepost.a epost__.o epost___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libepost.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libepost.a /bin/ln -f .epost.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.epost.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/epost' @@ -16830,7 +16865,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o /bin/rm -f libesearch.a .libesearch.a.stamp ar cr libesearch.a esearch__.o esearch___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libesearch.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libesearch.a /bin/ln -f .esearch.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.esearch.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/esearch' @@ -16862,7 +16897,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/eutils/espell/espell___.cpp -o espell___.o /bin/rm -f libespell.a .libespell.a.stamp ar cr libespell.a espell__.o espell___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libespell.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libespell.a /bin/ln -f .espell.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.espell.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/espell' @@ -16894,7 +16929,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o /bin/rm -f libesummary.a .libesummary.a.stamp ar cr libesummary.a esummary__.o esummary___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libesummary.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libesummary.a /bin/ln -f .esummary.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.esummary.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/esummary' @@ -16926,7 +16961,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/eutils/linkout/linkout___.cpp -o linkout___.o /bin/rm -f liblinkout.a .liblinkout.a.stamp ar cr liblinkout.a linkout__.o linkout___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblinkout.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblinkout.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f liblinkout.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/liblinkout.a /bin/ln -f .linkout.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.linkout.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/linkout' @@ -16958,7 +16993,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o /bin/rm -f libeinfo.a .libeinfo.a.stamp ar cr libeinfo.a einfo__.o einfo___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libeinfo.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libeinfo.a /bin/ln -f .einfo.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.einfo.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/einfo' @@ -16990,7 +17025,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/eutils/uilist/uilist___.cpp -o uilist___.o /bin/rm -f libuilist.a .libuilist.a.stamp ar cr libuilist.a uilist__.o uilist___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libuilist.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libuilist.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libuilist.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libuilist.a /bin/ln -f .uilist.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.uilist.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/uilist' @@ -17022,7 +17057,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o /bin/rm -f libehistory.a .libehistory.a.stamp ar cr libehistory.a ehistory__.o ehistory___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libehistory.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libehistory.a /bin/ln -f .ehistory.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.ehistory.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/ehistory' @@ -17054,7 +17089,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/eutils/efetch/efetch___.cpp -o efetch___.o /bin/rm -f libefetch.a .libefetch.a.stamp ar cr libefetch.a efetch__.o efetch___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libefetch.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libefetch.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libefetch.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libefetch.a /bin/ln -f .efetch.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.efetch.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/efetch' @@ -17176,7 +17211,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -DNCBI_APP_BUILT_AS=test_pubmed_article /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/eutils/efetch/test/test_pubmed_article.cpp -o test_pubmed_article.o /usr/bin/g++ -std=gnu++17 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -Wl,-z,relro -O2 test_pubmed_article.o -L/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib -lefetch -lpubmed -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -o test_pubmed_article strip test_pubmed_article -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f test_pubmed_article /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f test_pubmed_article /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin /bin/ln -f test_pubmed_article /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/test_pubmed_article make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/efetch/test' make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/efetch/test' @@ -17215,7 +17250,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o /bin/rm -f libeutils.a .libeutils.a.stamp ar cr libeutils.a eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libeutils.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libeutils.a /bin/ln -f .eutils.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.eutils.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/eutils/api' @@ -17550,7 +17585,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/edit/huge_file_process.cpp -o huge_file_process.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o mla_updater.o eutils_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o pub_fix.o huge_asn_reader.o huge_file.o huge_file_process.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxobjedit.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xobjedit.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/edit' @@ -17642,7 +17677,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxcleanup.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xcleanup.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/cleanup' @@ -17801,7 +17836,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxformat.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxformat.a /bin/ln -f .xformat.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xformat.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/format' @@ -17861,7 +17896,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libseqmasks_io.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.seqmasks_io.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/seqmasks_io' @@ -17920,7 +17955,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libalign_format.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libalign_format.a /bin/ln -f .align_format.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.align_format.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/objtools/align_format' @@ -18042,7 +18077,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxalgodustmask.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xalgodustmask.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/algo/dustmask' @@ -20052,7 +20087,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxalgowinmask.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xalgowinmask.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/algo/winmask' @@ -20136,7 +20171,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/regexp -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include/util/regexp /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/algo/sequence/micro_introns.cpp -o micro_introns.o /bin/rm -f libxalgoseq.a .libxalgoseq.a.stamp ar cr libxalgoseq.a adapter_search.o cpg.o nuc_prop.o orf.o prot_prop.o regexp_loc.o seq_match.o restriction.o antigenic.o coiled_coil.o signal_seq.o make_cdr_prods.o find_pattern.o gene_model.o project_exons.o transform_align.o annot_compare.o compare_feats.o align_group.o masking_delta.o align_cleanup.o util.o gap_analysis.o internal_stops.o micro_introns.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoseq.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoseq.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxalgoseq.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxalgoseq.a /bin/ln -f .xalgoseq.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xalgoseq.dep make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/algo/sequence' @@ -20282,7 +20317,7 @@ /usr/bin/gcc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libcomposition_adjustment.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.composition_adjustment.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/algo/blast/composition_adjustment' @@ -20490,7 +20525,7 @@ /usr/bin/gcc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /bin/rm -f libblast.a .libblast.a.stamp ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libblast.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libblast.a /bin/ln -f .blast.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.blast.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/algo/blast/core' @@ -20540,7 +20575,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -DDO_INLINE -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxalgoblastdbindex.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xalgoblastdbindex.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/algo/blast/dbindex' @@ -20776,7 +20811,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /usr/bin/g++ -std=gnu++17 -msse4.2 -Wl,--enable-new-dtags -Wl,-export-dynamic -Wl,-z,relro -O2 main.o mkindex_app.o -L/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lresolv -lm -o makembindex strip makembindex -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin /bin/ln -f makembindex /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/bin/makembindex make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/algo/blast/dbindex/makeindex' make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/algo/blast/dbindex/makeindex' @@ -21775,7 +21810,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxblast.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxblast.a /bin/ln -f .xblast.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xblast.dep rm .core_blast_dynarray.c .core_spliced_hits.c .core_boost_erf.c .core_index_ungapped.c .core_gencode_singleton.c .core_ncbi_math.c .core_lookup_wrap.c .core_hspfilter_besthit.c .core_gapinfo.c .core_blast_seqsrc.c .core_blast_psi.c .core_blast_itree.c .core_blast_filter.c .core_blast_engine.c .core_blast_hspstream_mt_utils.c .core_blast_lookup.c .core_blast_diagnostics.c .core_blast_nascan.c .core_blast_hspstream.c .core_na_ungapped.c .core_phi_extend.c .core_blast_nalookup.c .core_blast_encoding.c .core_blast_psi_priv.c .core_jumper.c .core_blast_aalookup.c .core_blast_util.c .core_hspfilter_mapper.c .core_blast_posit.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_blast_traceback.c .core_blast_stat.c .core_blast_setup.c .core_link_hsps.c .core_pattern.c .core_greedy_align.c .core_lookup_util.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_blast_traceback_mt_priv.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_aascan.c .core_blast_query_info.c .core_phi_lookup.c .core_blast_gapalign.c .core_blast_seg.c .core_split_query.c .core_blast_sw.c .core_blast_tune.c .core_blast_options.c .core_blast_extend.c .core_phi_gapalign.c @@ -22053,7 +22088,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include -Wno-unused-local-typedefs -DBOOST_DISABLE_THREADS /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libproteinkmer.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libproteinkmer.a /bin/ln -f .proteinkmer.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.proteinkmer.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/algo/blast/proteinkmer' @@ -22263,7 +22298,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxblastformat.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xblastformat.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/algo/blast/format' @@ -22346,7 +22381,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libblastinput.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libblastinput.a /bin/ln -f .blastinput.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.blastinput.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/algo/blast/blastinput' @@ -22391,7 +22426,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libigblast.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libigblast.a /bin/ln -f .igblast.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.igblast.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/algo/blast/igblast' @@ -22511,7 +22546,7 @@ /usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.19.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_WITHOUT_MT -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/inc -I/build/reproducible-path/ncbi-igblast-1.19.0/c++/include /build/reproducible-path/ncbi-igblast-1.19.0/c++/src/algo/align/util/best_placement.cpp -o best_placement.o /bin/rm -f libxalgoalignutil.a .libxalgoalignutil.a.stamp ar cr libxalgoalignutil.a align_shadow.o blast_tabular.o score_builder.o score_lookup.o align_filter.o genomic_compart.o patch_sequence.o align_compare.o align_sort.o depth_filter.o tabular_fmt.o collection_score.o named_collection_score_impl.o best_placement.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoalignutil.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.19.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoalignutil.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib /bin/ln -f libxalgoalignutil.a /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/lib/libxalgoalignutil.a /bin/ln -f .xalgoalignutil.dep /build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/status/.xalgoalignutil.dep make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.19.0/c++/GCC1320-Release64/build/algo/align/util' @@ -24647,12 +24682,12 @@ Testing, please wait... -OK -- [util/lmdb] lmdb_test.sh 1 (real 0.27, user 0.00, sys 0.01) -OK -- [util/lmdb] lmdb_test.sh 2 (real 0.01, user 0.01, sys 0.00) -OK -- [util/lmdb] lmdb_test.sh 3 (real 0.01, user 0.01, sys 0.00) -OK -- [util/lmdb] lmdb_test.sh 4 (real 0.01, user 0.00, sys 0.00) -OK -- [util/lmdb] lmdb_test.sh 5 (real 0.01, user 0.01, sys 0.00) -OK -- [serial/datatool] datatool.sh (real 0.19, user 0.14, sys 0.05) +OK -- [util/lmdb] lmdb_test.sh 1 (real 1.10, user 0.02, sys 0.03) +OK -- [util/lmdb] lmdb_test.sh 2 (real 0.02, user 0.01, sys 0.01) +OK -- [util/lmdb] lmdb_test.sh 3 (real 0.03, user 0.02, sys 0.01) +OK -- [util/lmdb] lmdb_test.sh 4 (real 0.03, user 0.02, sys 0.01) +OK -- [util/lmdb] lmdb_test.sh 5 (real 0.02, user 0.01, sys 0.01) +OK -- [serial/datatool] datatool.sh (real 0.40, user 0.21, sys 0.13) SKP -- [serial/datatool] datatool_xml.sh DIS -- [objtools/blast/seqdb_reader/test] scan_blastdb_mt DIS -- [objtools/blast/seqdb_reader/test] scan_blastdb_st @@ -24720,12 +24755,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3331416/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3331416/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3296776 and its subdirectories -I: Current time: Tue Apr 30 09:51:40 -12 2024 -I: pbuilder-time-stamp: 1714513900 +I: removing directory /srv/workspace/pbuilder/3331416 and its subdirectories +I: Current time: Tue Jun 3 20:11:40 +14 2025 +I: pbuilder-time-stamp: 1748931100