Diff of the two buildlogs: -- --- b1/build.log 2024-05-20 21:37:57.955339227 +0000 +++ b2/build.log 2024-05-20 21:52:12.306968556 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jun 22 15:58:56 -12 2025 -I: pbuilder-time-stamp: 1750651136 +I: Current time: Tue May 21 11:43:09 +14 2024 +I: pbuilder-time-stamp: 1716241389 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -33,52 +33,84 @@ dpkg-source: info: applying fix-gcc10-build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3571274/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3550767/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 20 21:43 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3550767/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3550767/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='f07a23987e2e497a822ab893763a02c5' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3571274' - PS1='# ' - PS2='> ' + INVOCATION_ID=1a7b46df56234c4c990ab84c11d07967 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3550767 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.y1NACtF2/pbuilderrc_B4Lo --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.y1NACtF2/b1 --logfile b1/build.log minc-tools_2.3.00+dfsg-10.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.y1NACtF2/pbuilderrc_mt6r --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.y1NACtF2/b2 --logfile b2/build.log minc-tools_2.3.00+dfsg-10.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 20 17:47 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3571274/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 20 11:26 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3550767/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -275,7 +307,7 @@ Get: 139 http://deb.debian.org/debian trixie/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 140 http://deb.debian.org/debian trixie/main amd64 texlive-base all 2023.20240207-1 [22.0 MB] Get: 141 http://deb.debian.org/debian trixie/main amd64 texlive-latex-base all 2023.20240207-1 [1255 kB] -Fetched 108 MB in 4s (27.5 MB/s) +Fetched 108 MB in 14s (7959 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package m4. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19701 files and directories currently installed.) @@ -875,7 +907,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/minc-tools-2.3.00+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../minc-tools_2.3.00+dfsg-10_source.changes +I: user script /srv/workspace/pbuilder/3550767/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3550767/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/minc-tools-2.3.00+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../minc-tools_2.3.00+dfsg-10_source.changes dpkg-buildpackage: info: source package minc-tools dpkg-buildpackage: info: source version 2.3.00+dfsg-10 dpkg-buildpackage: info: source distribution unstable @@ -993,8 +1029,8 @@ -- Looking for include file pwd.h - found -- Found BISON: /usr/bin/bison (found version "3.8.2") -- Found FLEX: /usr/bin/flex (found version "2.6.4") --- Configuring done (4.0s) --- Generating done (0.1s) +-- Configuring done (28.2s) +-- Generating done (0.7s) CMake Warning: Manually-specified variables were not used by the project: @@ -1010,376 +1046,339 @@ -- Build files have been written to: /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg' dh_auto_build - cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/minc-tools-2.3.00+dfsg -B/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/depend -make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/depend -make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/depend -make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/depend make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake "--color=" -make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/depend -make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/depend +make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/depend make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake "--color=" -make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/depend +make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/depend make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/depend +make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/depend +make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/depend make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake "--color=" -make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/depend +make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/depend make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincconvert.dir/DependInfo.cmake "--color=" -make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/depend -make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/depend +make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/depend make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minccopy.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/build +make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/build +[ 1%] [FLEX][ncgenyy] Building scanner with flex 2.6.4 +[ 2%] [BISON][gram] Building parser with bison 3.8.2 +[ 3%] [FLEX][lex] Building scanner with flex 2.6.4 +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgenyy.c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/ncgenyy.l +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/lex.c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc/lex.l +make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 3%] [BISON][ncgentab] Building parser with bison 3.8.2 +make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/depend +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison -d -o /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgentab.c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison --debug -d -o /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/gram.c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincdump.dir/DependInfo.cmake "--color=" -make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/depend +make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/build +make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/depend +/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: warning: 111 shift/reduce conflicts [-Wconflicts-sr] +/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples +make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/depend make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample1.dir/DependInfo.cmake "--color=" -make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/depend -make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/depend +/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: warning: 1 shift/reduce conflict [-Wconflicts-sr] +/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples +make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincexample2.dir/DependInfo.cmake "--color=" +make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/build +[ 4%] Building C object progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -MF CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o.d -o CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincview/invert_raw_image.c +make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 5%] Building C object progs/CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o +make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/build +make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. 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make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 6%] Building C object progs/CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o +make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake "--color=" -make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/depend -make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/depend -make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg 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/usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake "--color=" -make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/depend -make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs 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/usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake "--color=" -make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/depend -make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/depend -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs 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conversion/CMakeFiles/minctoecat.dir/depend -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison -d -o /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgentab.c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/depend -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/build -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgenyy.c 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-ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -MF CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o.d -o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -MF CMakeFiles/minclookup.dir/minclookup/minclookup.c.o.d -o CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minclookup/minclookup.c make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/build +make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 14%] Building C object progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o +make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/build +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -MF CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o.d -o CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincinfo/mincinfo.c make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd 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CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincmakevector/mincmakevector.c +[ 16%] Building C object progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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-I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincextract.dir/mincextract/mincextract.c.o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -o mincextract -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -o minclookup -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 32%] 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CMakeFiles/minccalc.dir/minccalc/eval.c.o.d -o CMakeFiles/minccalc.dir/minccalc/eval.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc/eval.c +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmath.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -o mincmath -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf +[ 33%] Linking C executable mincaverage +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincaverage.dir/link.txt --verbose=1 +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -o mincaverage -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf +[ 33%] Built target mincmakevector +make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/depend make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/build -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/build -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/build -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/build -/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: warning: 111 shift/reduce conflicts [-Wconflicts-sr] -/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && 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'/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -MF CMakeFiles/mincresample.dir/mincresample/mincresample.c.o.d -o CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c +[ 35%] Built target mincexpand +make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/depend +[ 35%] Built target mincconvert make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake "--color=" +[ 35%] Built target mincmakescalar +make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/depend make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincstats.dir/DependInfo.cmake "--color=" +make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/depend make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/build -make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/build -make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/build -make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/build -make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/build make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/build make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/build +make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/build +[ 35%] Linking C executable minc_modify_header +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_modify_header.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 36%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -MF CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o.d -o CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincreshape/mincreshape.c +[ 37%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o -MF CMakeFiles/mincgen.dir/mincgen/genlib.c.o.d -o CMakeFiles/mincgen.dir/mincgen/genlib.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c +[ 38%] Building C object progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib 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-I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -o minc_modify_header -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +[ 39%] Building C object progs/CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -MF CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o.d -o CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minctoraw/minctoraw.c make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/build make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 39%] Built target invert_raw_image +make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/depend make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake "--color=" +[ 40%] Linking C executable mincdump +[ 40%] Built target mincexample2 +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincdump.dir/link.txt --verbose=1 +make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/depend make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/build +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection 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progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o -MF CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o.d -o 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/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake "--color=" +[ 41%] Building C object progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -MF CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o.d -o CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincwindow/mincwindow.c +[ 41%] Built target mincexample1 +make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/depend +make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/CMakeFiles/rawtominc.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/build make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 4%] Building C object progs/CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -[ 5%] Building C object progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/build -make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/build -make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/build -[ 6%] Building C object progs/CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -MF CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o.d -o CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincview/invert_raw_image.c make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 42%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mincsample.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong 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-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -MF CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o.d -o CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/rawtominc/rawtominc.c +[ 43%] Built target minccopy +make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/depend +make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/progs 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progs/CMakeFiles/minccmp.dir/minccmp/minccmp.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -MF CMakeFiles/minccmp.dir/minccmp/minccmp.c.o.d -o CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccmp/minccmp.c +[ 55%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/init.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/init.c.o -MF CMakeFiles/mincgen.dir/mincgen/init.c.o.d -o CMakeFiles/mincgen.dir/mincgen/init.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/init.c +[ 56%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o +[ 57%] Linking C executable xfmconcat +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -MF CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o.d -o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincreshape/copy_data.c +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -o xfmconcat -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf +[ 58%] Building C object progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -MF CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o.d -o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c +[ 59%] Linking C executable xfminvert +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfminvert.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 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-DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -MF CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o.d -o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -o minccmp -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf -[ 65%] Built target worldtovoxel -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincdump.dir/mincdump/mincdump.c.o CMakeFiles/mincdump.dir/mincdump/vardata.c.o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -o mincdump -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -[ 65%] Built target mincexpand -[ 65%] Built target minccopy -[ 65%] Built target voxeltoworld -[ 65%] Built target mincmakevector -[ 65%] Built target mincwindow -[ 65%] Built target mincconvert -make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/depend +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/load.c.o -MF CMakeFiles/mincgen.dir/mincgen/load.c.o.d -o CMakeFiles/mincgen.dir/mincgen/load.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/load.c +[ 60%] Built target transformtags +[ 60%] Built target voxeltoworld +[ 60%] Built target worldtovoxel +make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/depend make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake "--color=" -[ 66%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o -[ 67%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/node.c.o -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o -MF CMakeFiles/minccalc.dir/minccalc/ident.c.o.d -o CMakeFiles/minccalc.dir/minccalc/ident.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc/ident.c -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/node.c.o -MF CMakeFiles/minccalc.dir/minccalc/node.c.o.d -o CMakeFiles/minccalc.dir/minccalc/node.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc/node.c -[ 68%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg 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conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -MF CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o.d -o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/minctoecat/ecat_write.c -[ 70%] Building C object progs/CMakeFiles/mincgen.dir/ncgenyy.c.o -[ 71%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -c 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CMakeFiles/mincgen.dir/ncgenyy.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs/ncgenyy.c +[ 62%] Building C object progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -MF CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o.d -o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_io.c +[ 63%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o -MF CMakeFiles/minccalc.dir/minccalc/ident.c.o.d -o CMakeFiles/minccalc.dir/minccalc/ident.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc/ident.c +make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration 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-I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -MF CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o.d -o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c: In function 'main': -/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c:204:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] - 204 | fread(&ana_hdr, sizeof (ana_hdr), 1, fp); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 71%] Linking C executable mincblob -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincblob.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincsample.dir/mincsample/mincsample.c.o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -o mincsample -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf -[ 72%] Building C object conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -MF CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o.d -o CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c -[ 72%] Built target transformtags -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -o mincblob -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf -[ 73%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o -cd 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-MF CMakeFiles/mincgen.dir/mincgen/genlib.c.o.d -o CMakeFiles/mincgen.dir/mincgen/genlib.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c -[ 75%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/ecattominc/insertblood.c make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/build +make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c: In function 'gen_c': +/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:28: warning: '%.16g' directive writing between 1 and 23 bytes into a region of size 20 [-Wformat-overflow=] + 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); + | ^~~~~ +In function 'cstring', + inlined from 'gen_c' at /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:361:20: +/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:27: note: assuming directive output of 22 bytes + 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); + | ^~~~~~~ +In file included from /usr/include/stdio.h:964, + from /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:11: +In function 'sprintf', + inlined from 'cstring' at /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:9, + inlined from 'gen_c' at /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:361:20: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 24 bytes into a destination of size 20 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ +[ 67%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -o mincconcat -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu 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directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o -MF CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o.d -o CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/minctoecat/minctoecat.c make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 69%] Building C object conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -MF CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o.d -o CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c +[ 69%] Built target xfmconcat +make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/depend +make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake "--color=" +[ 70%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/optim.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H 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-o minccmp -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf +[ 73%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/sym.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/sym.c.o -MF CMakeFiles/minccalc.dir/minccalc/sym.c.o.d -o CMakeFiles/minccalc.dir/minccalc/sym.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/minccalc/sym.c +[ 74%] Linking C executable mincstats +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -o rawtominc -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf +cd 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CMakeFiles/mincreshape.dir/link.txt --verbose=1 +[ 78%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -o mincreshape -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -MF CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o.d -o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/minctoecat/ecat_write.c make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 76%] Built target invert_raw_image +[ 79%] Linking C executable mincresample +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincresample.dir/link.txt --verbose=1 +[ 79%] Built target xfminvert +make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/depend +/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c: In function 'main': +make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake "--color=" +/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c:204:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] + 204 | fread(&ana_hdr, sizeof (ana_hdr), 1, fp); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincresample.dir/mincresample/mincresample.c.o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -o mincresample -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 76%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema/file_io.c +make -f conversion/CMakeFiles/upet2mnc.dir/build.make 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78%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema/globals.c -[ 78%] Linking C executable rawtominc -[ 78%] Built 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'/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 88%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema/globals.c +[ 89%] Linking C executable nii2mnc cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/nii2mnc.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[ 89%] Built target mincreshape +[ 89%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include 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-Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -o mincreshape -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -[ 87%] Built target minclookup -[ 87%] Built target mincmath -[ 87%] Built target minccmp -[ 87%] Built target mnc2nii -[ 87%] Built target mincdump +[ 90%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/group.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema/group.c +[ 91%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -o upet2mnc -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -o minctoecat -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz 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CMakeFiles/upet2mnc.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c: In function 'gen_c': -/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:28: warning: '%.16g' directive writing between 1 and 23 bytes into a region of size 20 [-Wformat-overflow=] - 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); - | ^~~~~ -In function 'cstring', - inlined from 'gen_c' at /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:361:20: -/build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:27: note: assuming directive output of 22 bytes - 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); - | ^~~~~~~ -In file included from /usr/include/stdio.h:964, - from /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:11: -In function 'sprintf', - inlined from 'cstring' at /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:9, - inlined from 'gen_c' at /build/reproducible-path/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:361:20: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 24 bytes into a destination of size 20 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -o upet2mnc -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -[ 91%] Built target mincreshape -[ 91%] Built target nii2mnc +[ 93%] Built target mincmorph make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 91%] Linking C executable minccalc +[ 93%] Built target minctoecat +[ 93%] Built target mnc2nii +[ 93%] Linking C executable minccalc cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccalc.dir/link.txt --verbose=1 -[ 92%] Linking C executable mincmorph -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmorph.dir/link.txt --verbose=1 -[ 93%] Linking C static library libacr_nema.a -cd 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-Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -o mincmorph -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/acr_nema.dir/link.txt --verbose=1 -/usr/bin/ar qc libacr_nema.a CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -[ 93%] Built target ecattominc -[ 93%] Built target minctoecat -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target mincresample -[ 93%] Built target mincstats -/usr/bin/ranlib libacr_nema.a +[ 93%] Built target nii2mnc make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 93%] Built target upet2mnc +[ 94%] Linking C static library libacr_nema.a +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -P CMakeFiles/acr_nema.dir/cmake_clean_target.cmake +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/acr_nema.dir/link.txt --verbose=1 +/usr/bin/ar qc libacr_nema.a CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +/usr/bin/ranlib libacr_nema.a make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target mincmorph -[ 93%] Built target minccalc -[ 93%] Built target acr_nema +[ 94%] Built target ecattominc +[ 94%] Built target acr_nema make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/depend make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/minc-tools-2.3.00+dfsg /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/DependInfo.cmake "--color=" @@ -1681,22 +1720,21 @@ make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/build make[3]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' [ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -[ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -[ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -[ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_to_minc.c -[ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c -[ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_read.c -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c +[ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_to_minc.c +[ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o +[ 99%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o +[ 99%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/siemens_to_dicom.c +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c +[ 99%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/progress.c -[ 99%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o +cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_read.c +[100%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu -I/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -c /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/string_to_filename.c -[100%] Linking C executable mincgen -cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincgen.dir/link.txt --verbose=1 -/usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincgen.dir/mincgen/main.c.o CMakeFiles/mincgen.dir/ncgentab.c.o CMakeFiles/mincgen.dir/ncgenyy.c.o CMakeFiles/mincgen.dir/mincgen/escapes.c.o CMakeFiles/mincgen.dir/mincgen/genlib.c.o CMakeFiles/mincgen.dir/mincgen/getfill.c.o CMakeFiles/mincgen.dir/mincgen/init.c.o CMakeFiles/mincgen.dir/mincgen/load.c.o -o mincgen -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf +make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' +[100%] Built target minccalc /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ @@ -1706,10 +1744,6 @@ /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: note: in expansion of macro 'VERSION_STRING' 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ -/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c: In function 'setup_minc_variables': -/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c:1084:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] - 1084 | fread(data, 1, length, fp); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'is_cdexport_file': /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:1019:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1019 | fread(tst_str, 1, DICM_MAGIC_SIZE, fp); @@ -1722,8 +1756,10 @@ /build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:980:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 980 | fscanf(fp, "%s", pipe_output_name); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[3]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' -[100%] Built target mincgen +/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c: In function 'setup_minc_variables': +/build/reproducible-path/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c:1084:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] + 1084 | fread(data, 1, length, fp); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking C executable dcm2mnc cd /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/dcm2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -o dcm2mnc -L/usr/lib/x86_64-linux-gnu/lib -Wl,-rpath,/usr/lib/x86_64-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf libacr_nema.a -lminc2 -lm -lz -lm -ldl -lnetcdf @@ -1733,10 +1769,10 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' dh_auto_test - cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 + cd obj-x86_64-linux-gnu && make -j20 test ARGS\+=--verbose ARGS\+=-j20 make[1]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j42 +/usr/bin/ctest --force-new-ctest-process --verbose -j20 UpdateCTestConfiguration from :/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu/DartConfiguration.tcl @@ -1804,61 +1840,61 @@ 6: Test timeout computed to be: 1500 1: Case 1 - Test the essential command line options. 2: Case 1 - Basic output. -2: Case 2 - Test the sum and sum2 options. 3: Processing:...Done 5: Transforming slices:.....Done +2: Case 2 - Test the sum and sum2 options. 1: Case 2 - test operation with no command-line options. +1: Case 3 - test the dimnames option. 2: Case 3 - Test the mean option. 4: Case 1...OK -1: Case 3 - test the dimnames option. -2: Case 4 - Test the stddev and variance options. -1: Case 4 - test the varnames option. 3: Normalizing:..Done -5: Transforming slices:.....Done 3: Processing:...Done -2: Case 5 - Test the min and max options. +1: Case 4 - test the varnames option. +5: Transforming slices:.....Done +2: Case 4 - Test the stddev and variance options. +3: OK. 1: Case 5 - test the dimlength option. +1/6 Test #3: mincaverage-test ................. Passed 0.40 sec 5: OK. -1/6 Test #5: mincresample-test ................ Passed 0.07 sec +2/6 Test #5: mincresample-test ................ Passed 0.43 sec +2: Case 5 - Test the min and max options. 4: Case 2...OK -3: OK. -2/6 Test #3: mincaverage-test ................. Passed 0.08 sec 1: Case 6 - test the vartype option. 2: Case 6 - Test the CoM option. 1: Case 7 - test the vardims option. -2: Case 7 - Test the median and entropy options. 1: Case 8 - test the varatts option. +2: Case 7 - Test the median and entropy options. +4: Case 3...OK 2: Case 8 - Test the histogram option. -2: Case 9 - Test the integer histogram option. 1: Case 9 - test the varatts option. -4: Case 3...OK -2: OK. -3/6 Test #2: mincstats-test ................... Passed 0.15 sec +2: Case 9 - Test the integer histogram option. 1: Case 10 - test the atttype option. +4: Case 4...OK +2: OK. +3/6 Test #2: mincstats-test ................... Passed 0.99 sec 1: Case 11 - test the attvalue option. 1: Case 12 - test the minc_version option. 1: Case 13 - test the error_string option. -4: Case 4...OK 1: OK. -4/6 Test #1: mincinfo-test .................... Passed 0.23 sec -6: OK. -5/6 Test #6: mincreshape-test ................. Passed 0.26 sec +4/6 Test #1: mincinfo-test .................... Passed 1.26 sec 4: Case 5...OK...OK 4: Case 6...OK...OK...OK +6: OK. +5/6 Test #6: mincreshape-test ................. Passed 1.70 sec 4: Case 7...OK 4: Case 8...OK 4: Case 9...OK 4: No errors detected. -6/6 Test #4: minccalc-test .................... Passed 0.48 sec +6/6 Test #4: minccalc-test .................... Passed 2.23 sec 100% tests passed, 0 tests failed out of 6 -Total Test time (real) = 0.49 sec +Total Test time (real) = 2.28 sec make[1]: Leaving directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/minc-tools/ - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/minc-tools-2.3.00\+dfsg/debian/minc-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/minc-tools-2.3.00\+dfsg/debian/minc-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/minc-tools-2.3.00+dfsg -B/build/reproducible-path/minc-tools-2.3.00+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2020,8 +2056,8 @@ dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'minc-tools-dbgsym' in '../minc-tools-dbgsym_2.3.00+dfsg-10_amd64.deb'. dpkg-deb: building package 'minc-tools' in '../minc-tools_2.3.00+dfsg-10_amd64.deb'. +dpkg-deb: building package 'minc-tools-dbgsym' in '../minc-tools-dbgsym_2.3.00+dfsg-10_amd64.deb'. dpkg-genbuildinfo --build=binary -O../minc-tools_2.3.00+dfsg-10_amd64.buildinfo dpkg-genchanges --build=binary -O../minc-tools_2.3.00+dfsg-10_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2029,12 +2065,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3550767/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3550767/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3571274 and its subdirectories -I: Current time: Sun Jun 22 16:00:57 -12 2025 -I: pbuilder-time-stamp: 1750651257 +I: removing directory /srv/workspace/pbuilder/3550767 and its subdirectories +I: Current time: Tue May 21 11:52:07 +14 2024 +I: pbuilder-time-stamp: 1716241927