Diff of the two buildlogs: -- --- b1/build.log 2024-05-05 13:51:29.150022658 +0000 +++ b2/build.log 2024-05-05 13:53:42.792335450 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun May 5 01:46:41 -12 2024 -I: pbuilder-time-stamp: 1714916801 +I: Current time: Sun Jun 8 10:14:33 +14 2025 +I: pbuilder-time-stamp: 1749327273 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying cstdint.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1126001/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2863991/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 7 20:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2863991/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2863991/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='920f9240dac7441085f3a96882eb85f7' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1126001' - PS1='# ' - PS2='> ' + INVOCATION_ID=33e430b174654677ab5a3e50dfd66367 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2863991 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PdjYntS5/pbuilderrc_T2cC --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PdjYntS5/b1 --logfile b1/build.log metaeuk_6-a5d39d9+ds-5.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PdjYntS5/pbuilderrc_zftQ --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PdjYntS5/b2 --logfile b2/build.log metaeuk_6-a5d39d9+ds-5.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 3 08:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1126001/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 5 14:46 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2863991/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -190,7 +222,7 @@ Get: 60 http://deb.debian.org/debian trixie/main amd64 libsimde-dev all 0.8.2-1 [465 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libxxhash-dev amd64 0.8.2-2+b1 [79.3 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.5+dfsg2-2 [358 kB] -Fetched 36.7 MB in 1s (34.4 MB/s) +Fetched 36.7 MB in 0s (107 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19695 files and directories currently installed.) @@ -453,7 +485,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metaeuk_6-a5d39d9+ds-5_source.changes +I: user script /srv/workspace/pbuilder/2863991/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2863991/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../metaeuk_6-a5d39d9+ds-5_source.changes dpkg-buildpackage: info: source package metaeuk dpkg-buildpackage: info: source version 6-a5d39d9+ds-5 dpkg-buildpackage: info: source distribution unstable @@ -543,8 +579,8 @@ -- Found OpenMP -- xxd not found, using xxdi.pl instead -- ShellCheck not found --- Configuring done (5.7s) --- Generating done (0.4s) +-- Configuring done (1.9s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -560,7 +596,7 @@ -- Build files have been written to: /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds' dh_auto_build - cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/metaeuk-6-a5d39d9+ds -B/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -570,426 +606,426 @@ make -f lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/build.make lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/depend make -f lib/mmseqs/lib/alp/CMakeFiles/alp.dir/build.make lib/mmseqs/lib/alp/CMakeFiles/alp.dir/depend make -f lib/mmseqs/lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/mmseqs/lib/ksw2/CMakeFiles/ksw2.dir/depend +make[3]: Entering directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/metaeuk-6-a5d39d9+ds /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/microtar /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake "--color=" make -f 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-I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -MF CMakeFiles/cacode.dir/lubksb.cpp.o.d -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode/lubksb.cpp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true blosum62.out -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true easypredict.sh cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true taxtocontig.sh -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -[ 2%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprob.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/njn_dynprogprob.cpp -[ 3%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -[ 4%] Generating ../generated/PAM30.out.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl VTML80.out > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl VTML40.out > 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lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o -MF CMakeFiles/cacode.dir/ludcmp.cpp.o.d -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode/ludcmp.cpp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true PAM30.out -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -MF CMakeFiles/alp.dir/njn_random.cpp.o.d -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/njn_random.cpp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl predictexons.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl blosum62.out > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl easypredict.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl taxtocontig.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -[ 5%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -[ 6%] Building CXX object lib/mmseqs/lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h.tmp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/njn_dynprogprobproto.cpp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl PAM30.out > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/ksw2 && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT lib/mmseqs/lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -MF CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o.d -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2/ksw2_extz2_sse.cpp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h.tmp -[ 6%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/njn_localmaxstat.cpp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h -[ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 7%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -[ 7%] Generating ../generated/Library255_may17.lib.h -[ 7%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +[ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true blosum62.out +[ 6%] Generating ../generated/easypredict.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/njn_localmaxstatmatrix.cpp -[ 8%] Linking CXX static library libversion.a -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -[ 9%] Generating ../generated/libPolished_8.lib.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -[ 9%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -[ 9%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o -MF CMakeFiles/cacode.dir/ludcmp.cpp.o.d -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode/ludcmp.cpp +[ 6%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +[ 6%] Generating ../generated/Library255_may17.lib.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true nucleotide.out cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/sls_alp_sim.cpp +[ 7%] Generating ../generated/PAM30.out.h +[ 8%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true easypredict.sh +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -MF CMakeFiles/cacode.dir/nrutil.cpp.o.d -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode/nrutil.cpp +[ 8%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +[ 8%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 8%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true Library255_may17.lib +[ 9%] Generating ../generated/libPolished_8.lib.h +[ 9%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +[ 9%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true PAM30.out +[ 10%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/src/version && /usr/bin/c++ -DGIT_SHA1=6-a5d39d9+ds-5 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/src/commons -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/version/CMakeFiles/version.dir/Version.cpp.o -MF CMakeFiles/version.dir/Version.cpp.o.d -o CMakeFiles/version.dir/Version.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/src/version/Version.cpp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/sls_pvalues.cpp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +[ 10%] Generating ../generated/cs219.lib.h +[ 10%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/sls_alignment_evaluer.cpp +[ 11%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar 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lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/sls_alp.cpp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/njn_localmaxstatutil.cpp +[ 14%] Generating ../generated/K4000.crf.h +[ 14%] Generating ../generated/easysearch.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/sls_basic.cpp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/sls_alp_data.cpp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl predictexons.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true Library255_may17.lib +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/njn_ioutil.cpp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true libPolished_8.lib +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true cs219.lib +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true krona_prelude.html +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true result_viz_prelude.html.zst +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl taxtocontig.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h +[ 14%] Generating ../generated/easycluster.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true K4000.crf +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl easypredict.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true easysearch.sh +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true easycluster.sh +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -[ 10%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -[ 10%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl VTML80.out > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl VTML40.out > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl blosum62.out > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl PAM30.out > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/njn_dynprogproblim.cpp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/sls_alignment_evaluer.cpp -[ 10%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -[ 11%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/sls_alp.cpp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/sls_alp_regression.cpp -/usr/bin/ranlib libversion.a -make[3]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' -[ 12%] Linking C static library libmicrotar.a -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -[ 12%] Built target local-generated -[ 12%] Generating ../generated/cs219.lib.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true cs219.lib -make[3]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl cs219.lib > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h -[ 12%] Generating ../generated/krona_prelude.html.h -[ 12%] Generating ../generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true krona_prelude.html -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true result_viz_prelude.html.zst -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h.tmp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h -[ 12%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/njn_localmaxstatutil.cpp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h -/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function ‘base’: -/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 373 | ret->bound = s->bound; - | ^~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:372:19: -/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19: -/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 93 | ret->type = type; - | ~~~~~~~~~~^~~~~~ -/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function ‘base’: -/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 367 | ret->value = s->value; - | ^~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19: -/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function ‘base’: -/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 446 | ret->value = NAN; - | ^~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:444:19: -/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -[ 12%] Built target version -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -/usr/bin/ranlib libmicrotar.a -[ 13%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/sls_basic.cpp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h.tmp -[ 14%] Generating ../generated/K4000.crf.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true K4000.crf -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -make[3]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl K4000.crf > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/K4000.crf.h -[ 15%] Generating ../generated/easysearch.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true easysearch.sh -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/predictexons.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h.tmp -[ 15%] Built target microtar -[ 15%] Generating ../generated/easycluster.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true easycluster.sh -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/easypredict.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h -[ 16%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/njn_ioutil.cpp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h -[ 16%] Building CXX object lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/alp && /usr/bin/c++ -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/mmseqs/lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp/sls_alp_data.cpp -[ 16%] Generating ../generated/easytaxonomy.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/data && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated/taxtocontig.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h.tmp +make[3]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML40.out.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/VTML80.out.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blosum62.out.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide.out.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h.tmp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true easytaxonomy.sh +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/PAM30.out.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/libPolished_8.lib.h +[ 15%] Linking CXX static library libversion.a +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easysearch.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easycluster.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h -[ 16%] Generating ../generated/easyrbh.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +[ 15%] Generating ../generated/easyrbh.sh.h +[ 15%] Generating ../generated/easytaxonomy.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true easytaxonomy.sh cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true easyrbh.sh +[ 15%] Built target local-generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h.tmp +[ 16%] Generating ../generated/blastpgp.sh.h [ 16%] Generating ../generated/blastp.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h.tmp +[ 16%] Generating ../generated/map.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h.tmp +[ 16%] Generating ../generated/rbh.sh.h +[ 16%] Generating ../generated/linclust.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true blastp.sh -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl blastp.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h -make[3]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' -[ 17%] Generating ../generated/blastpgp.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true blastpgp.sh -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h.tmp -[ 17%] Built target cacode -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h.tmp -[ 18%] Linking C static library libtinyexpr.a -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h -[ 18%] Generating ../generated/map.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true map.sh -[ 18%] Generating ../generated/linclust.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true linclust.sh -[ 18%] Generating ../generated/rbh.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true rbh.sh -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl map.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl linclust.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl rbh.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h -[ 18%] Generating ../generated/clustering.sh.h +[ 16%] Generating ../generated/clustering.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +[ 17%] Generating ../generated/cascaded_clustering.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true linclust.sh cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true clustering.sh -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h.tmp +[ 17%] Generating ../generated/update_clustering.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -/usr/bin/ranlib libtinyexpr.a -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl clustering.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h -make[3]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h -[ 19%] Generating ../generated/cascaded_clustering.sh.h +[ 17%] Generating ../generated/searchtargetprofile.sh.h +[ 17%] Generating ../generated/createindex.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true cascaded_clustering.sh -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h -[ 19%] Built target tinyexpr -[ 19%] Generating ../generated/update_clustering.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h.tmp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true update_clustering.sh -[ 19%] Generating ../generated/searchtargetprofile.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true searchtargetprofile.sh -[ 20%] Generating ../generated/createtaxdb.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true createtaxdb.sh +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true createindex.sh +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/Library255_may17.lib.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cs219.lib.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -[ 20%] Generating ../generated/createindex.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true createindex.sh -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl blastp.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easytaxonomy.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/easyrbh.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl map.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl rbh.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl linclust.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl clustering.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -[ 20%] Generating ../generated/translated_search.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl createindex.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true translated_search.sh +/usr/bin/ranlib libversion.a +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h.tmp +make[3]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h.tmp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h.tmp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h -[ 20%] Generating ../generated/taxpercontig.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/map.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastpgp.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastp.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h.tmp +[ 18%] Generating ../generated/createtaxdb.sh.h +[ 18%] Generating ../generated/translated_search.sh.h +[ 18%] Generating ../generated/taxpercontig.sh.h +[ 19%] Generating ../generated/multihitsearch.sh.h +[ 20%] Generating ../generated/blastn.sh.h +[ 21%] Generating ../generated/enrich.sh.h +[ 21%] Generating ../generated/multihitdb.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true createtaxdb.sh +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true translated_search.sh cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true taxpercontig.sh -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h -[ 20%] Generating ../generated/multihitdb.sh.h -make[3]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' -[ 20%] Built target ksw2 -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h.tmp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true multihitdb.sh -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h -[ 21%] Generating ../generated/multihitsearch.sh.h -[ 22%] Generating ../generated/taxonomy.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h.tmp -[ 25%] Generating ../generated/searchslicedtargetprofile.sh.h -[ 25%] Generating ../generated/blastn.sh.h -[ 25%] Generating ../generated/enrich.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true multihitsearch.sh cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true enrich.sh +[ 22%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true blastn.sh +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createindex.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/clustering.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linclust.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchtargetprofile.sh.h +[ 23%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/rbh.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/update_clustering.sh.h +[ 23%] Built target version cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true taxonomy.sh -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h -[ 26%] Generating ../generated/linsearch.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true linsearch.sh cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -[ 27%] Generating ../generated/databases.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl enrich.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl blastn.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true databases.sh -[ 28%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h -[ 28%] Generating ../generated/iterativepp.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h.tmp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h.tmp +[ 25%] Generating ../generated/nucleotide_clustering.sh.h +[ 25%] Generating ../generated/linsearch.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h.tmp +[ 26%] Generating ../generated/databases.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true linsearch.sh +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true databases.sh +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h.tmp +[ 26%] Generating ../generated/iterativepp.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/createtaxdb.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true iterativepp.sh +[ 27%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/translated_search.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitdb.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxpercontig.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl databases.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h -[ 29%] Generating ../generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/checkshell.sh true tsv2exprofiledb.sh -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/multihitsearch.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/blastn.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mkdir -p /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl databases.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/enrich.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h.tmp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h.tmp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h.tmp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/iterativepp.sh.h -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h.tmp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/taxonomy.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/linsearch.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h.tmp +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/workflow && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/databases.sh.h +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/krona_prelude.html.h +[ 28%] Linking C static library libmicrotar.a +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +make[3]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' +[ 28%] Built target microtar +/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function ‘base’: +/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 373 | ret->bound = s->bound; + | ^~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:372:19: +/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19: +/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 93 | ret->type = type; + | ~~~~~~~~~~^~~~~~ +/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function ‘base’: +/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 367 | ret->value = s->value; + | ^~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:366:19: +/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c: In function ‘base’: +/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 446 | ret->value = NAN; + | ^~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:444:19: +/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +[ 29%] Linking C static library libtinyexpr.a +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +make[3]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' +[ 29%] Built target tinyexpr +make[3]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' +[ 29%] Built target ksw2 +[ 29%] Built target cacode cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/K4000.crf.h > /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/K4000.crf.h.tmp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/data/resources && mv -f /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/K4000.crf.h.tmp /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated/K4000.crf.h make[3]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' @@ -1003,88 +1039,88 @@ make -f lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/build.make lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/build make[3]: Entering directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' [ 30%] Building CXX object 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object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o +[ 35%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated 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-I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/tantan.cpp [ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/SubstitutionMatrix.cpp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/UniprotKB.cpp +[ 45%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o [ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/tantan.cpp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/Util.cpp [ 46%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering/CacheFriendlyOperations.cpp @@ -1096,19 +1132,6 @@ cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering/IndexBuilder.cpp [ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering/KmerGenerator.cpp -In file included from /usr/include/string.h:535, - from /usr/include/c++/13/cstring:42, - from /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/Util.h:6, - from /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/ProfileStates.h:6, - from /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/SubstitutionMatrix.cpp:1: -In function ‘void* memset(void*, int, size_t)’, - inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/SubstitutionMatrix.cpp:174:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 59 | return __builtin___memset_chk (__dest, __ch, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ - 60 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering/Main.cpp [ 49%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o @@ -1116,15 +1139,28 @@ [ 49%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering/PrefilteringIndexReader.cpp [ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering/QueryMatcher.cpp [ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering/ReducedMatrix.cpp -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering/QueryMatcher.cpp [ 50%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering/SequenceLookup.cpp [ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering/UngappedAlignment.cpp [ 51%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering/ungappedprefilter.cpp +In file included from /usr/include/string.h:535, + from /usr/include/c++/13/cstring:42, + from /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/Util.h:6, + from /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/ProfileStates.h:6, + from /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/SubstitutionMatrix.cpp:1: +In function ‘void* memset(void*, int, size_t)’, + inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/SubstitutionMatrix.cpp:174:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 59 | return __builtin___memset_chk (__dest, __ch, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ + 60 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit/besthitperset.cpp [ 52%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o @@ -1137,10 +1173,10 @@ cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit/MultiHitSearch.cpp [ 54%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering 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CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy/NcbiTaxonomy.cpp [ 54%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated 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-I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy/NcbiTaxonomy.cpp [ 55%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 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Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o @@ -1229,9 +1265,6 @@ cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated 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lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/maskbygff.cpp [ 72%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode 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/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/mergeresultsbyset.cpp [ 73%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o @@ -1254,6 +1287,9 @@ cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/profile2seq.cpp [ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/result2dnamsa.cpp +/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ [ 77%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/result2flat.cpp [ 78%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o @@ -1264,31 +1300,11 @@ cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/result2profile.cpp [ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/result2repseq.cpp -In file included from /usr/include/c++/13/algorithm:60, - from /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd/simd.h:9, - from /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/CSProfile.h:9, - from /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/CSProfile.cpp:5: -In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, - inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, - inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, - inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/CSProfile.cpp:383:14, - inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/CSProfile.cpp:350:58: -/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 931 | *__first = __tmp; - | ~~~~~~~~~^~~~~~~ [ 79%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/result2stats.cpp -In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, - inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, - inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, - inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/CSProfile.cpp:383:14, - inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/CSProfile.cpp:354:58: -/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 931 | *__first = __tmp; - | ~~~~~~~~~^~~~~~~ [ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/reverseseq.cpp [ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/reverseseq.cpp cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/cpmvrmlndb.cpp [ 80%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/extractframes.cpp @@ -1298,10 +1314,10 @@ cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/sortresult.cpp [ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/splitdb.cpp -[ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/subtractdbs.cpp [ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering 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CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/splitsequence.cpp +[ 82%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/subtractdbs.cpp [ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util/summarizealis.cpp [ 83%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o @@ -1340,9 +1356,9 @@ cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/workflow/Databases.cpp [ 90%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/workflow/Linclust.cpp -[ 90%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o [ 91%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/workflow/EasySearch.cpp +[ 91%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/workflow/EasyRbh.cpp [ 91%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/workflow/EasyCluster.cpp @@ -1366,6 +1382,26 @@ cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/workflow/CreateIndex.cpp [ 95%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/multihit -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/prefiltering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/linclust -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/taxonomy -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/util -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/MMseqsBase.cpp +In file included from /usr/include/c++/13/algorithm:60, + from /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd/simd.h:9, + from /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/CSProfile.h:9, + from /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/CSProfile.cpp:5: +In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, + inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, + inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, + inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/CSProfile.cpp:383:14, + inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/CSProfile.cpp:350:58: +/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 931 | *__first = __tmp; + | ~~~~~~~~~^~~~~~~ +In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, + inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, + inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, + inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/CSProfile.cpp:383:14, + inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons/CSProfile.cpp:354:58: +/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 931 | *__first = __tmp; + | ~~~~~~~~~^~~~~~~ [ 96%] Linking CXX static library libmmseqs-framework.a cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/cmake -P CMakeFiles/mmseqs-framework.dir/cmake_clean_target.cmake cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs-framework.dir/link.txt --verbose=1 @@ -1379,24 +1415,24 @@ make[3]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/metaeuk.dir/build.make src/CMakeFiles/metaeuk.dir/build make[3]: Entering directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' -[ 96%] Building CXX object src/CMakeFiles/metaeuk.dir/exonpredictor/groupstoacc.cpp.o [ 96%] Building CXX object src/CMakeFiles/metaeuk.dir/exonpredictor/resultspercontig.cpp.o -[ 98%] Building CXX object src/CMakeFiles/metaeuk.dir/workflow/PredictExons.cpp.o +cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DOPENMP=1 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd 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-I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/src/commons -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/tinyexpr -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/microtar -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/simd -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/alp -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/cacode -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/lib/ksw2 -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/lib/mmseqs/generated -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/alignment -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/clustering -I/build/reproducible-path/metaeuk-6-a5d39d9+ds/lib/mmseqs/src/commons 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metaeuk cd /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/metaeuk.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/metaeuk-6-a5d39d9+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp CMakeFiles/metaeuk.dir/exonpredictor/resultspercontig.cpp.o CMakeFiles/metaeuk.dir/exonpredictor/collectoptimalset.cpp.o CMakeFiles/metaeuk.dir/exonpredictor/reduceredundancy.cpp.o CMakeFiles/metaeuk.dir/exonpredictor/unitesetstofasta.cpp.o CMakeFiles/metaeuk.dir/exonpredictor/groupstoacc.cpp.o CMakeFiles/metaeuk.dir/workflow/PredictExons.cpp.o CMakeFiles/metaeuk.dir/workflow/EasyPredict.cpp.o CMakeFiles/metaeuk.dir/workflow/TaxToContig.cpp.o CMakeFiles/metaeuk.dir/metaeuk.cpp.o -o metaeuk ../lib/mmseqs/src/libmmseqs-framework.a version/libversion.a -latomic ../lib/mmseqs/lib/tinyexpr/libtinyexpr.a -lm -Wl,-Bstatic -lzstd ../lib/mmseqs/lib/microtar/libmicrotar.a -Wl,-Bdynamic -lbz2 @@ -1406,14 +1442,14 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' dh_auto_test - rm -fr -- /tmp/dh-xdg-rundir-LsgcLo6y + rm -fr -- /tmp/dh-xdg-rundir-wR9iSrn_ create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/metaeuk.substvars debian/metaeuk-examples.substvars rm -fr -- debian/.debhelper/generated/metaeuk/ debian/metaeuk/ debian/tmp/ debian/.debhelper/generated/metaeuk-examples/ debian/metaeuk-examples/ dh_auto_install install -m0755 -d /build/reproducible-path/metaeuk-6-a5d39d9\+ds/debian/tmp - cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/metaeuk-6-a5d39d9\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/metaeuk-6-a5d39d9\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/metaeuk-6-a5d39d9+ds -B/build/reproducible-path/metaeuk-6-a5d39d9+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1454,9 +1490,9 @@ cd debian/metaeuk cd debian/metaeuk-examples chmod a-x usr/share/doc/metaeuk/README.md usr/share/doc/metaeuk/changelog.Debian + gzip -9nf usr/share/doc/metaeuk/README.md usr/share/doc/metaeuk/changelog.Debian chmod a-x usr/share/doc/metaeuk-examples/changelog.Debian usr/share/doc/metaeuk/example-data/DB.fasta usr/share/doc/metaeuk/example-data/QUERY.fasta usr/share/doc/metaeuk/example-data/VTML80.out usr/share/doc/metaeuk/example-data/resources/CovSeqidQscPercMinDiag.lib usr/share/doc/metaeuk/example-data/resources/CovSeqidQscPercMinDiagTargetCov.lib usr/share/doc/metaeuk/example-data/resources/ExpOpt3_8_polished.cs32.lib usr/share/doc/metaeuk/example-data/resources/K4000.crf usr/share/doc/metaeuk/example-data/resources/Library255_may17.lib usr/share/doc/metaeuk/example-data/resources/cs219.lib usr/share/doc/metaeuk/example-data/resources/libPure_blosum62_255.lib usr/share/doc/metaeuk/example-data/resources/libPure_blosum62_32.lib usr/share/doc/metaeuk/example-data/workflow/blastpgp.sh usr/share/doc/metaeuk/example-data/workflow/cascaded_clustering.sh usr/share/doc/metaeuk/example-data/workflow/createtaxdb.sh usr/share/doc/metaeuk/example-data/workflow/databases.sh usr/share/doc/metaeuk/example-data/workflow/enrich.sh usr/share/doc/metaeuk/example-data/workflow/linclust.sh usr/share/doc/metaeuk/example-data/workflow/nucleotide_clustering.sh usr/share/doc/metaeuk/example-data/workflow/searchslicedtargetprofile.sh usr/share/doc/metaeuk/example-data/workflow/taxpercontig.sh usr/share/doc/metaeuk/example-data/workflow/update_clustering.sh gzip -9nf usr/share/doc/metaeuk-examples/changelog.Debian usr/share/doc/metaeuk/example-data/DB.fasta usr/share/doc/metaeuk/example-data/QUERY.fasta usr/share/doc/metaeuk/example-data/VTML80.out usr/share/doc/metaeuk/example-data/resources/CovSeqidQscPercMinDiag.lib usr/share/doc/metaeuk/example-data/resources/CovSeqidQscPercMinDiagTargetCov.lib usr/share/doc/metaeuk/example-data/resources/ExpOpt3_8_polished.cs32.lib usr/share/doc/metaeuk/example-data/resources/K4000.crf usr/share/doc/metaeuk/example-data/resources/Library255_may17.lib usr/share/doc/metaeuk/example-data/resources/cs219.lib usr/share/doc/metaeuk/example-data/resources/libPure_blosum62_255.lib usr/share/doc/metaeuk/example-data/resources/libPure_blosum62_32.lib usr/share/doc/metaeuk/example-data/workflow/blastpgp.sh usr/share/doc/metaeuk/example-data/workflow/cascaded_clustering.sh usr/share/doc/metaeuk/example-data/workflow/createtaxdb.sh usr/share/doc/metaeuk/example-data/workflow/databases.sh usr/share/doc/metaeuk/example-data/workflow/enrich.sh usr/share/doc/metaeuk/example-data/workflow/linclust.sh usr/share/doc/metaeuk/example-data/workflow/nucleotide_clustering.sh usr/share/doc/metaeuk/example-data/workflow/searchslicedtargetprofile.sh usr/share/doc/metaeuk/example-data/workflow/taxpercontig.sh usr/share/doc/metaeuk/example-data/workflow/update_clustering.sh - gzip -9nf usr/share/doc/metaeuk/README.md usr/share/doc/metaeuk/changelog.Debian cd '/build/reproducible-path/metaeuk-6-a5d39d9+ds' cd '/build/reproducible-path/metaeuk-6-a5d39d9+ds' dh_fixperms @@ -1493,18 +1529,18 @@ debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-1), " + install -m0755 -d debian/metaeuk-examples/DEBIAN + echo misc:Depends= >> debian/metaeuk-examples.substvars + echo misc:Pre-Depends= >> debian/metaeuk-examples.substvars + dpkg-gencontrol -pmetaeuk-examples -ldebian/changelog -Tdebian/metaeuk-examples.substvars -cdebian/control -Pdebian/metaeuk-examples "-Vsimde:Built-Using=simde (= 0.8.2-1), " install -m0755 -d debian/metaeuk/DEBIAN echo misc:Depends= >> debian/metaeuk.substvars echo misc:Pre-Depends= >> debian/metaeuk.substvars install -m0755 -d debian/.debhelper/metaeuk/dbgsym-root/DEBIAN dpkg-gencontrol -pmetaeuk -ldebian/changelog -Tdebian/metaeuk.substvars -cdebian/control -Pdebian/.debhelper/metaeuk/dbgsym-root "-Vsimde:Built-Using=simde (= 0.8.2-1), " -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=metaeuk-dbgsym "-DDepends=metaeuk (= \${binary:Version})" "-DDescription=debug symbols for metaeuk" -DBuild-Ids=716b2bbf480927507f53d3d999e9716d7d61bc36 -DSection=debug -UMulti-Arch -UReplaces -UBreaks - install -m0755 -d debian/metaeuk-examples/DEBIAN - echo misc:Depends= >> debian/metaeuk-examples.substvars - echo misc:Pre-Depends= >> debian/metaeuk-examples.substvars - dpkg-gencontrol -pmetaeuk-examples -ldebian/changelog -Tdebian/metaeuk-examples.substvars -cdebian/control -Pdebian/metaeuk-examples "-Vsimde:Built-Using=simde (= 0.8.2-1), " + chmod 0644 -- debian/metaeuk-examples/DEBIAN/control chmod 0644 -- debian/.debhelper/metaeuk/dbgsym-root/DEBIAN/control dpkg-gencontrol -pmetaeuk -ldebian/changelog -Tdebian/metaeuk.substvars -cdebian/control -Pdebian/metaeuk "-Vsimde:Built-Using=simde (= 0.8.2-1), " - chmod 0644 -- debian/metaeuk-examples/DEBIAN/control chmod 0644 -- debian/metaeuk/DEBIAN/control make[1]: Leaving directory '/build/reproducible-path/metaeuk-6-a5d39d9+ds' dh_md5sums @@ -1531,12 +1567,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2863991/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2863991/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1126001 and its subdirectories -I: Current time: Sun May 5 01:51:28 -12 2024 -I: pbuilder-time-stamp: 1714917088 +I: removing directory /srv/workspace/pbuilder/2863991 and its subdirectories +I: Current time: Sun Jun 8 10:16:42 +14 2025 +I: pbuilder-time-stamp: 1749327402