Diff of the two buildlogs:

--
--- b1/build.log	2025-01-27 04:52:38.812230920 +0000
+++ b2/build.log	2025-01-27 06:12:55.914584728 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Sun Jan 26 12:53:04 -12 2025
-I: pbuilder-time-stamp: 1737939184
+I: Current time: Mon Mar  2 01:15:43 +14 2026
+I: pbuilder-time-stamp: 1772363743
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
 I: copying local configuration
@@ -34,52 +34,84 @@
 dpkg-source: info: applying doxygen_mathjax_path.patch
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/1681150/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/1374404/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos5-amd64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Mar  1 11:15 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/1374404/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/1374404/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='amd64'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
-  DISTRIBUTION='trixie'
-  HOME='/root'
-  HOST_ARCH='amd64'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
+  BASH_VERSION='5.2.37(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=amd64
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 '
+  DIRSTACK=()
+  DISTRIBUTION=trixie
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=x86_64
+  HOST_ARCH=amd64
   IFS=' 	
   '
-  INVOCATION_ID='8e51ec2d2a4f4485a62356b68c40e4f5'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='1681150'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=ae8ceb112fa14668b1af7844803d1931
+  LANG=C
+  LANGUAGE=et_EE:et
+  LC_ALL=C
+  MACHTYPE=x86_64-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=1374404
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xOcqaGHQ/pbuilderrc_beVO --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xOcqaGHQ/b1 --logfile b1/build.log libsbml_5.20.4+dfsg-0.1.dsc'
-  SUDO_GID='110'
-  SUDO_UID='105'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://46.16.76.132:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xOcqaGHQ/pbuilderrc_iefF --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xOcqaGHQ/b2 --logfile b2/build.log libsbml_5.20.4+dfsg-0.1.dsc'
+  SUDO_GID=110
+  SUDO_UID=105
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://213.165.73.152:3128
 I: uname -a
-  Linux ionos1-amd64 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux
 I: ls -l /bin
-  lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/1681150/tmp/hooks/D02_print_environment finished
+  lrwxrwxrwx 1 root root 7 Nov 22  2024 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/1374404/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -785,7 +817,7 @@
 Get: 630 http://deb.debian.org/debian trixie/main amd64 r-base-dev all 4.4.2-1 [4516 B]
 Get: 631 http://deb.debian.org/debian trixie/main amd64 rdfind amd64 1.6.0-1+b1 [44.7 kB]
 Get: 632 http://deb.debian.org/debian trixie/main amd64 swig amd64 4.3.0-0.1 [1502 kB]
-Fetched 453 MB in 40s (11.2 MB/s)
+Fetched 453 MB in 20s (22.5 MB/s)
 Preconfiguring packages ...
 Selecting previously unselected package libpython3.13-minimal:amd64.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19856 files and directories currently installed.)
@@ -2837,8 +2869,8 @@
 Setting up tzdata (2024b-6) ...
 
 Current default time zone: 'Etc/UTC'
-Local time is now:      Mon Jan 27 01:05:47 UTC 2025.
-Universal Time is now:  Mon Jan 27 01:05:47 UTC 2025.
+Local time is now:      Sun Mar  1 11:18:37 UTC 2026.
+Universal Time is now:  Sun Mar  1 11:18:37 UTC 2026.
 Run 'dpkg-reconfigure tzdata' if you wish to change it.
 
 Setting up libxcb-present0:amd64 (1.17.0-2+b1) ...
@@ -3564,7 +3596,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/libsbml-5.20.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../libsbml_5.20.4+dfsg-0.1_source.changes
+I: user script /srv/workspace/pbuilder/1374404/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for trixie
+I: user script /srv/workspace/pbuilder/1374404/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/libsbml-5.20.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../libsbml_5.20.4+dfsg-0.1_source.changes
 dpkg-buildpackage: info: source package libsbml
 dpkg-buildpackage: info: source version 5.20.4+dfsg-0.1
 dpkg-buildpackage: info: source distribution unstable
@@ -3726,9 +3762,9 @@
 
    To contact the developers directly, email libsbml-team@googlegroups.com
 
-   Configured on host 'ionos1-amd64'
+   Configured on host 'i-capture-the-hostname'
      host type                       = Linux
-     host operating system           = Linux 6.1.0-30-amd64
+     host operating system           = Linux 6.12.9+bpo-amd64
      host CPU architecture           = x86_64
 
    General build flags:
@@ -3779,8 +3815,8 @@
 --   Compression support is enabled for .bz2 files
 -- 
 ----------------------------------------------------------------------
--- Configuring done (35.3s)
--- Generating done (4.4s)
+-- Configuring done (2.9s)
+-- Generating done (0.4s)
 CMake Warning:
   Manually-specified variables were not used by the project:
 
@@ -38999,19 +39035,13 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/EventAssignment.h:1180: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:2524: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:2524: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/groups/validator/GroupsSBMLErrorTable.h:55: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.cpp:2592: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1656: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/List.cpp:560: warning: Found unknown command '@_tif_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/List.cpp:561: warning: Found unknown command '@_tmemberof_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/List.cpp:562: warning: Found unknown command '@_tendif_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/List.h:622: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.cpp:2592: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1656: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/groups/validator/GroupsSBMLErrorTable.h:55: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/FormulaFormatter.cpp:82: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/FormulaFormatter.h:91: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5030: warning: Found unknown command '@_tsbmlconstant_t'
@@ -39020,11 +39050,11 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:987: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1086: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1086: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/CompartmentReference.h:923: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/CompartmentReference.h:923: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
@@ -39032,15 +39062,15 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:46: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4126: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4126: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/groups/sbml/Group.h:1230: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/groups/sbml/Group.h:1230: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2052: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2052: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:355: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1243: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1243: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2257: warning: Found unknown command '@_tc_t'
@@ -39051,15 +39081,14 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/RDFAnnotationParser.cpp:1545: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1676: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1676: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:950: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:950: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/groups/sbml/Member.h:1054: warning: Found unknown command '@_tc_t'
@@ -39068,23 +39097,26 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag </_tcode_t> found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag <_tcode_t> found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Input.h:72: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_tldquo_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/RDFAnnotationParser.cpp:1545: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:761: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:761: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/MathML.cpp:2089: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2260: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2260: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/InitialAssignment.cpp:1218: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/InitialAssignment.h:1164: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:467: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:467: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_treturn_t'
@@ -39094,10 +39126,12 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:618: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:545: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
@@ -39109,106 +39143,52 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:741: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1246: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1246: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/InitialAssignment.cpp:1218: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/InitialAssignment.h:1164: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/MathML.cpp:2089: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Input.h:72: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_tldquo_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLError.h:1086: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLErrorTable.h:52: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/validator/CompSBMLError.h:44: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:360: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:361: warning: Found unknown command '@_tbrief_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_tldquo_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_trdquo_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBMLExtension.cpp:473: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBMLExtension.h:694: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1356: warning: explicit link request to '_tFluxBoundOperation_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1358: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:87: warning: Found unknown command '@_tif_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:88: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:89: warning: Found unknown command '@_tendif_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3911: warning: Found unknown command '@_tsbmlconstant_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3911: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:1244: warning: Found unknown command '@_tmemberof_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tp_t'
@@ -39219,77 +39199,91 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4092: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4092: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:1244: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:87: warning: Found unknown command '@_tif_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:88: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:89: warning: Found unknown command '@_tendif_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag </_tcode_t> found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/FunctionDefinition.cpp:1315: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/FunctionDefinition.h:999: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/FunctionDefinition.h:1000: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ModifierSpeciesReference.cpp:388: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ModifierSpeciesReference.h:473: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ModifierSpeciesReference.h:474: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1356: warning: explicit link request to '_tFluxBoundOperation_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1358: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4405: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4405: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/MultiSpeciesType.h:1311: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBasePlugin.h:1263: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:727: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1644: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1644: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/List.cpp:460: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/List.h:474: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:727: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:360: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:361: warning: Found unknown command '@_tbrief_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_tldquo_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBMLExtension.cpp:473: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBMLExtension.h:694: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag </_tcode_t> found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:955: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/CompartmentReference.h:940: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:935: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.cpp:364: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:497: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:498: warning: Found unknown command '@_tp_t'
@@ -39299,55 +39293,83 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Trigger.h:1116: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1828: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1828: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/CompartmentReference.h:940: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:935: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/validator/CompSBMLError.h:44: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBasePlugin.h:1263: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/MultiSpeciesType.h:1311: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1956: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1956: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLError.h:1086: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLErrorLog.cpp:400: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLErrorLog.h:424: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4028: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4028: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:903: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:516: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
@@ -39360,17 +39382,37 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:903: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:516: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:691: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:691: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/FormulaTokenizer.h:87: warning: Found unknown command '@_tstruct_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/FormulaTokenizer.h:88: warning: Found unknown command '@_tsbmlbrief_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLErrorLog.cpp:400: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLErrorLog.h:424: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:1396: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:1396: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:493: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
@@ -39385,60 +39427,39 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:807: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/MathML.cpp:2206: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:105: warning: Found unknown command '@_tif_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:106: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:107: warning: Found unknown command '@_tendif_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/FormulaTokenizer.cpp:247: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/CVTerm.h:337: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:871: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag </_tcode_t> found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Input.h:1578: warning: explicit link request to '_tInputSign_t_t' could not be resolved
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Input.h:1578: warning: explicit link request to '_tInputSign_t_t' could not be resolved
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:426: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:427: warning: Found unknown command '@_tbrief_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:428: warning: Unsupported symbol &_tldquo_t; found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:428: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1288: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1288: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/CVTerm.h:337: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/MathML.cpp:2206: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:105: warning: Found unknown command '@_tif_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:106: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:107: warning: Found unknown command '@_tendif_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag </_tcode_t> found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:890: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/FormulaTokenizer.cpp:247: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
@@ -39446,40 +39467,55 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:126: warning: Found unknown command '@_tif_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:127: warning: Found unknown command '@_tmemberof_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:128: warning: Found unknown command '@_tendif_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:890: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLConvert.cpp:67: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductRef.h:788: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:2006: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:2006: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.cpp:2000: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:1485: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLError.h:1058: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ListOf.h:830: warning: Unsupported xml/html tag <_tem_t> found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ListOf.h:830: warning: Unsupported xml/html tag </_tem_t> found
@@ -39495,23 +39531,23 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:3058: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:3058: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:3058: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:713: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:713: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp:548: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/CVTerm.h:1589: warning: explicit link request to '_tModelQualifierType_t_t' could not be resolved
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/CVTerm.h:1589: warning: explicit link request to '_tModelQualifierType_t_t' could not be resolved
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
@@ -39519,11 +39555,11 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2420: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2420: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:195: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:652: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Deletion.h:443: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Deletion.h:443: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Deletion.h:443: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Deletion.h:443: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:652: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.cpp:66: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/FormulaParser.cpp:58: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2324: warning: Found unknown command '@_tc_t'
@@ -83212,7 +83248,7 @@
 writing tag file...
 Running plantuml with JAVA...
 Running dot...
-Generating dot graphs using 21 parallel threads...
+Generating dot graphs using 43 parallel threads...
 Running dot for graph 1/793
 Running dot for graph 2/793
 Running dot for graph 3/793
@@ -87784,19 +87820,13 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/EventAssignment.h:1180: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:2524: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:2524: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/groups/validator/GroupsSBMLErrorTable.h:55: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.cpp:2592: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1656: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/List.cpp:560: warning: Found unknown command '@_tif_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/List.cpp:561: warning: Found unknown command '@_tmemberof_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/List.cpp:562: warning: Found unknown command '@_tendif_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/List.h:622: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.cpp:2592: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1656: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/groups/validator/GroupsSBMLErrorTable.h:55: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/FormulaFormatter.cpp:82: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/FormulaFormatter.h:91: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5030: warning: Found unknown command '@_tsbmlconstant_t'
@@ -87805,11 +87835,11 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:987: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1086: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1086: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/CompartmentReference.h:923: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/CompartmentReference.h:923: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
@@ -87817,15 +87847,15 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:46: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4126: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4126: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/groups/sbml/Group.h:1230: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/groups/sbml/Group.h:1230: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2052: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2052: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:355: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1243: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1243: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2257: warning: Found unknown command '@_tc_t'
@@ -87836,15 +87866,14 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/RDFAnnotationParser.cpp:1545: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1676: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1676: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:950: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:950: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/groups/sbml/Member.h:1054: warning: Found unknown command '@_tc_t'
@@ -87853,23 +87882,26 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag </_tcode_t> found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag <_tcode_t> found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Input.h:72: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_tldquo_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/RDFAnnotationParser.cpp:1545: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:761: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:761: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/MathML.cpp:2089: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2260: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2260: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/InitialAssignment.cpp:1218: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/InitialAssignment.h:1164: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:467: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:467: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_treturn_t'
@@ -87879,10 +87911,12 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:618: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:545: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
@@ -87894,106 +87928,52 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:741: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1246: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1246: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/InitialAssignment.cpp:1218: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/InitialAssignment.h:1164: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/MathML.cpp:2089: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Input.h:72: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_tldquo_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLError.h:1086: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLErrorTable.h:52: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/validator/CompSBMLError.h:44: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:360: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:361: warning: Found unknown command '@_tbrief_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_tldquo_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_trdquo_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBMLExtension.cpp:473: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBMLExtension.h:694: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1356: warning: explicit link request to '_tFluxBoundOperation_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1358: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:87: warning: Found unknown command '@_tif_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:88: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:89: warning: Found unknown command '@_tendif_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3911: warning: Found unknown command '@_tsbmlconstant_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3911: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:1244: warning: Found unknown command '@_tmemberof_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tp_t'
@@ -88004,77 +87984,91 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4092: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4092: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:1244: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:87: warning: Found unknown command '@_tif_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:88: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:89: warning: Found unknown command '@_tendif_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag </_tcode_t> found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/FunctionDefinition.cpp:1315: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/FunctionDefinition.h:999: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/FunctionDefinition.h:1000: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ModifierSpeciesReference.cpp:388: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ModifierSpeciesReference.h:473: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ModifierSpeciesReference.h:474: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1356: warning: explicit link request to '_tFluxBoundOperation_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1358: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4405: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4405: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/MultiSpeciesType.h:1311: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBasePlugin.h:1263: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:727: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1644: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1644: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/List.cpp:460: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/List.h:474: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:727: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:360: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:361: warning: Found unknown command '@_tbrief_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_tldquo_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBMLExtension.cpp:473: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBMLExtension.h:694: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag </_tcode_t> found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:955: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/CompartmentReference.h:940: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:935: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.cpp:364: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:497: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AlgebraicRule.h:498: warning: Found unknown command '@_tp_t'
@@ -88084,55 +88078,83 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Trigger.h:1116: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1828: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1828: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/CompartmentReference.h:940: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:935: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/validator/CompSBMLError.h:44: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/extension/SBasePlugin.h:1263: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/MultiSpeciesType.h:1311: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1956: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:1956: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLError.h:1086: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLErrorLog.cpp:400: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLErrorLog.h:424: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4028: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4028: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:903: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:516: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
@@ -88145,17 +88167,37 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:903: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:516: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:691: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:691: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/FormulaTokenizer.h:87: warning: Found unknown command '@_tstruct_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/FormulaTokenizer.h:88: warning: Found unknown command '@_tsbmlbrief_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLErrorLog.cpp:400: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLErrorLog.h:424: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:1396: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:1396: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:493: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
@@ -88170,60 +88212,39 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:807: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/MathML.cpp:2206: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:105: warning: Found unknown command '@_tif_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:106: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:107: warning: Found unknown command '@_tendif_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/FormulaTokenizer.cpp:247: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/CVTerm.h:337: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:871: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag </_tcode_t> found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Input.h:1578: warning: explicit link request to '_tInputSign_t_t' could not be resolved
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Input.h:1578: warning: explicit link request to '_tInputSign_t_t' could not be resolved
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:426: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:427: warning: Found unknown command '@_tbrief_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:428: warning: Unsupported symbol &_tldquo_t; found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:428: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1288: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1288: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/CVTerm.h:337: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/MathML.cpp:2206: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:105: warning: Found unknown command '@_tif_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:106: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:107: warning: Found unknown command '@_tendif_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag </_tcode_t> found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:890: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/FormulaTokenizer.cpp:247: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
@@ -88231,40 +88252,55 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:126: warning: Found unknown command '@_tif_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:127: warning: Found unknown command '@_tmemberof_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitKind.c:128: warning: Found unknown command '@_tendif_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:890: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLConvert.cpp:67: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductRef.h:788: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:2006: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SpeciesReference.h:2006: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.cpp:2000: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/KineticLaw.h:1485: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/SBMLError.h:1058: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ListOf.h:830: warning: Unsupported xml/html tag <_tem_t> found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/ListOf.h:830: warning: Unsupported xml/html tag </_tem_t> found
@@ -88280,23 +88316,23 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:3058: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:3058: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:3058: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:713: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:713: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp:548: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/CVTerm.h:1589: warning: explicit link request to '_tModelQualifierType_t_t' could not be resolved
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/CVTerm.h:1589: warning: explicit link request to '_tModelQualifierType_t_t' could not be resolved
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
@@ -88304,11 +88340,11 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2420: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2420: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.h:195: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:652: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Deletion.h:443: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Deletion.h:443: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Deletion.h:443: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/sbml/Deletion.h:443: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:652: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/ASTNode.cpp:66: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/math/FormulaParser.cpp:58: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/Unit.h:2324: warning: Found unknown command '@_tc_t'
@@ -102216,6 +102252,56 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:903: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:905: warning: Found unknown command '@_tcopydetails_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:907: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:978: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:981: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:983: warning: Found unknown command '@_tcopydetails_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:984: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:984: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:985: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:985: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:986: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:986: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:987: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:987: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:988: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:988: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:989: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:989: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:990: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:990: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:992: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:860: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:863: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:865: warning: Found unknown command '@_tcopydetails_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:866: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:866: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:867: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:867: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:868: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:868: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:869: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:869: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:870: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:870: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:871: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:871: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:872: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:872: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:874: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:1017: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:1020: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:1022: warning: Found unknown command '@_tcopydetails_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:1024: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:779: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:782: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:784: warning: Found unknown command '@_tcopydetails_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:786: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:917: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:919: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:921: warning: Found unknown command '@_tcopydetails_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:923: warning: Found unknown command '@_tsee_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:924: warning: Found unknown command '@_tsee_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:925: warning: Found unknown command '@_tsee_t'
 LevelVersionConverter.cpp...
 Generating docs for file SBMLLevelVersionConverter.h...
 Generating docs for file SBMLLocalParameterConverter.cpp...
@@ -102301,57 +102387,7 @@
 Generating docs for file CompExtension.cpp...
 Generating docs for file CompExtension.h...
 Generating docs for file CompModelPlugin.cpp...
-Generat/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:978: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:981: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:983: warning: Found unknown command '@_tcopydetails_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:984: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:984: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:985: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:985: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:986: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:986: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:987: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:987: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:988: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:988: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:989: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:989: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:990: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:990: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:992: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:860: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:863: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:865: warning: Found unknown command '@_tcopydetails_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:866: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:866: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:867: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:867: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:868: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:868: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:869: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:869: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:870: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:870: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:871: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:871: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:872: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:872: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:874: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:1017: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:1020: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:1022: warning: Found unknown command '@_tcopydetails_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:1024: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:779: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:782: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:784: warning: Found unknown command '@_tcopydetails_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:786: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:917: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:919: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:921: warning: Found unknown command '@_tcopydetails_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:923: warning: Found unknown command '@_tsee_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:924: warning: Found unknown command '@_tsee_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:925: warning: Found unknown command '@_tsee_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:926: warning: Found unknown command '@_tsee_t'
+Generat/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:926: warning: Found unknown command '@_tsee_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:927: warning: Found unknown command '@_tsee_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:928: warning: Found unknown command '@_tsee_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:930: warning: Found unknown command '@_tmemberof_t'
@@ -133875,6 +133911,7 @@
 Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h...
 Pa/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.cpp:413: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp:969: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.h:126: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
 rsing file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h...
 Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp...
 Parsing file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp...
@@ -133909,8 +133946,7 @@
 Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h...
 Parsing file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h...
 Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp...
-Parsing file /build/reproducible-path/libsbml-5.20./build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.h:126: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.cpp:944: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
+Parsing file /build/reproducible-path/libsbml-5.20./build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.cpp:944: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1242: warning: the \endcond does not have a corresponding \cond in this file
 4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp...
 Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.h...
@@ -140687,7 +140723,7 @@
 writing tag file...
 Running plantuml with JAVA...
 Running dot...
-Generating dot graphs using 21 parallel threads...
+Generating dot graphs using 43 parallel threads...
 Running dot for graph 1/1596
 Running dot for graph 2/1596
 Running dot for graph 3/1596
@@ -155082,7 +155118,7 @@
 writing tag file...
 Running plantuml with JAVA...
 Running dot...
-Generating dot graphs using 21 parallel threads...
+Generating dot graphs using 43 parallel threads...
 Running dot for graph 1/127
 Running dot for graph 2/127
 Running dot for graph 3/127
@@ -155973,7 +156009,6 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:222: warning: included file callExternalValidator.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:225: warning: included file convertSBML.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:228: warning: included file createExampleSBML.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH
 -path/libsbml-5.20.4+dfsg/docs/src/libsbml-math.txt...
 Parsing file /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-math.txt...
 Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-news.txt...
@@ -156060,7 +156095,8 @@
 Generating docs for example callExternalValidator.py...
 Generating docs for example convertSBML.py...
 Generating docs for example createExampleSBML.py...
-Generating docs fo/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH
+Generating docs fo/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH
@@ -156684,7 +156720,7 @@
 writing tag file...
 Running plantuml with JAVA...
 Running dot...
-Generating dot graphs using 21 parallel threads...
+Generating dot graphs using 43 parallel threads...
 Running dot for graph 1/7
 Running dot for graph 2/7
 Running dot for graph 3/7
@@ -162229,9 +162265,6 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:330: warning: included file translateMath.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:333: warning: included file unsetAnnotation.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:336: warning: included file unsetNotes.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH
 l/packages/qual/validator/QualSBMLError.h...
 Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h...
 Parsing file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h...
@@ -162326,7 +162359,10 @@
 Generating docs for example translateMath.cpp...
 Generating docs for example unsetAnnotation.cpp...
 Generating docs for example unsetNotes.cpp...
-Generating docs for example va/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH
+Generating docs for example va/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:351: warning: included file spec_example4.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:356: warning: included file fbc_example1.cpp is not found. Check your EXAMPLE_PATH
@@ -164916,7 +164952,7 @@
 Generating Perl module output...
 Running plantuml with JAVA...
 Running dot...
-Generating dot graphs using 21 parallel threads...
+Generating dot graphs using 43 parallel threads...
 Running dot for graph 1/1594
 Running dot for graph 2/1594
 Running dot for graph 3/1594
@@ -177503,7 +177539,7 @@
 1:  TestMultipleNamespaces
 1:  SBMLCompCheckConsistency
 1: 100%: Checks: 14, Failures: 0, Errors: 0
- 1/65 Test  #1: test_comp_extensions_run ......................   Passed    0.60 sec
+ 1/65 Test  #1: test_comp_extensions_run ......................   Passed    0.31 sec
 test 2
       Start  2: test_comp_sbase_run
 
@@ -177524,7 +177560,7 @@
 2:  comp_sBaseRef
 2:  comp_submodel
 2: 100%: Checks: 105, Failures: 0, Errors: 0
- 2/65 Test  #2: test_comp_sbase_run ...........................   Passed    1.49 sec
+ 2/65 Test  #2: test_comp_sbase_run ...........................   Passed    0.16 sec
 test 3
       Start  3: test_comp_util_run
 
@@ -177542,7 +177578,7 @@
 3:  SBMLCompFlatteningNewFlags
 3:  SBMLCompFlatteningConverterStripPackage
 3: 100%: Checks: 365, Failures: 0, Errors: 0
- 3/65 Test  #3: test_comp_util_run ............................   Passed    7.44 sec
+ 3/65 Test  #3: test_comp_util_run ............................   Passed    2.45 sec
 test 4
       Start  4: test_comp_validator_run
 
@@ -177562,7 +177598,7 @@
 4: 100%: Checks: 14, Failures: 0
 4: Testing Unit Consistency Constraints (10500 - 10599).
 4: 100%: Checks: 22, Failures: 0
- 4/65 Test  #4: test_comp_validator_run .......................   Passed    0.54 sec
+ 4/65 Test  #4: test_comp_validator_run .......................   Passed    0.27 sec
 test 5
       Start  5: test_sbml_package_fbc_run
 
@@ -177576,7 +177612,7 @@
 5:  ReadFbcExtension
 5:  FbcAssociation
 5: 100%: Checks: 38, Failures: 0, Errors: 0
- 5/65 Test  #5: test_sbml_package_fbc_run .....................   Passed    0.23 sec
+ 5/65 Test  #5: test_sbml_package_fbc_run .....................   Passed    0.10 sec
 test 6
       Start  6: test_fbc_validator_run
 
@@ -177594,7 +177630,7 @@
 6: 100%: Checks: 248, Failures: 0
 6: Testing Id Consistency Constraints (10300 - 10399).
 6: 100%: Checks: 13, Failures: 0
- 6/65 Test  #6: test_fbc_validator_run ........................   Passed    0.68 sec
+ 6/65 Test  #6: test_fbc_validator_run ........................   Passed    0.28 sec
 test 7
       Start  7: test_extension_package_groups_run
 
@@ -177608,7 +177644,7 @@
 7:  ReadGroupsExtension
 7:  GroupsModelPlugin
 7: 100%: Checks: 25, Failures: 0, Errors: 0
- 7/65 Test  #7: test_extension_package_groups_run .............   Passed    0.11 sec
+ 7/65 Test  #7: test_extension_package_groups_run .............   Passed    0.05 sec
 test 8
       Start  8: test_groups_validator_run
 
@@ -177626,7 +177662,7 @@
 8: 100%: Checks: 95, Failures: 0
 8: Testing Id Consistency Constraints (10300 - 10399).
 8: 100%: Checks: 11, Failures: 0
- 8/65 Test  #8: test_groups_validator_run .....................   Passed    0.09 sec
+ 8/65 Test  #8: test_groups_validator_run .....................   Passed    0.03 sec
 test 9
       Start  9: test_l3v2extendedmath_validator_run
 
@@ -177644,7 +177680,7 @@
 9: 100%: Checks: 4, Failures: 0
 9: Testing Unit Consistency Constraints (10500 - 10599).
 9: 100%: Checks: 6, Failures: 0
- 9/65 Test  #9: test_l3v2extendedmath_validator_run ...........   Passed    0.03 sec
+ 9/65 Test  #9: test_l3v2extendedmath_validator_run ...........   Passed    0.01 sec
 test 10
       Start 10: test_extension_package_l3v2extendedmath_run
 
@@ -177658,7 +177694,7 @@
 10:  ReadL3v2EMExtension
 10:  ReadWriteL3v2Infix
 10: 100%: Checks: 18, Failures: 0, Errors: 0
-10/65 Test #10: test_extension_package_l3v2extendedmath_run ...   Passed    0.09 sec
+10/65 Test #10: test_extension_package_l3v2extendedmath_run ...   Passed    0.03 sec
 test 11
       Start 11: test_sbml_package_layout_run
 
@@ -177687,7 +177723,7 @@
 11:  SBMLHandler
 11:  LayoutWriting
 11: 100%: Checks: 288, Failures: 0, Errors: 0
-11/65 Test #11: test_sbml_package_layout_run ..................   Passed    1.11 sec
+11/65 Test #11: test_sbml_package_layout_run ..................   Passed    0.59 sec
 test 12
       Start 12: test_layout_validator_run
 
@@ -177705,7 +177741,7 @@
 12: 100%: Checks: 223, Failures: 0
 12: Testing Id Consistency Constraints (10300 - 10399).
 12: 100%: Checks: 18, Failures: 0
-12/65 Test #12: test_layout_validator_run .....................   Passed    0.84 sec
+12/65 Test #12: test_layout_validator_run .....................   Passed    0.39 sec
 test 13
       Start 13: test_extension_package_qual_run
 
@@ -177719,7 +177755,7 @@
 13:  ReadQualExtension
 13:  GetAllElements
 13: 100%: Checks: 20, Failures: 0, Errors: 0
-13/65 Test #13: test_extension_package_qual_run ...............   Passed    0.10 sec
+13/65 Test #13: test_extension_package_qual_run ...............   Passed    0.04 sec
 test 14
       Start 14: test_sbml_package_qual_run
 
@@ -177737,7 +177773,7 @@
 14:  ListOfFunctionTerms
 14:  CopyAndClone
 14: 100%: Checks: 73, Failures: 0, Errors: 0
-14/65 Test #14: test_sbml_package_qual_run ....................   Passed    0.23 sec
+14/65 Test #14: test_sbml_package_qual_run ....................   Passed    0.09 sec
 test 15
       Start 15: test_qual_validator_run
 
@@ -177757,7 +177793,7 @@
 15: 100%: Checks: 4, Failures: 0
 15: Testing Math Consistency Constraints (10200 - 10299).
 15: 100%: Checks: 3, Failures: 0
-15/65 Test #15: test_qual_validator_run .......................   Passed    0.16 sec
+15/65 Test #15: test_qual_validator_run .......................   Passed    0.07 sec
 test 16
       Start 16: test_sbml_package_render_run
 
@@ -177796,7 +177832,7 @@
 16:  RenderReading
 16:  RenderWriting
 16: 100%: Checks: 136, Failures: 0, Errors: 0
-16/65 Test #16: test_sbml_package_render_run ..................   Passed    1.19 sec
+16/65 Test #16: test_sbml_package_render_run ..................   Passed    0.67 sec
 test 17
       Start 17: test_render_validator_run
 
@@ -177812,7 +177848,7 @@
 17: 
 17: Testing General XML Consistency Constraints (20000 - 29999).
 17: 100%: Checks: 111, Failures: 0
-17/65 Test #17: test_render_validator_run .....................   Passed    0.16 sec
+17/65 Test #17: test_render_validator_run .....................   Passed    0.06 sec
 test 18
       Start 18: test_sbml_annotation_run
 
@@ -177839,7 +177875,7 @@
 18:  RDFAnnotationV4
 18:  UnusualRDFAnnotation
 18: 100%: Checks: 193, Failures: 0, Errors: 0
-18/65 Test #18: test_sbml_annotation_run ......................   Passed    0.98 sec
+18/65 Test #18: test_sbml_annotation_run ......................   Passed    0.41 sec
 test 19
       Start 19: test_sbml_conversion_run
 
@@ -177861,7 +177897,7 @@
 19:  RateOfConverter
 19:  SBMLRateRuleConverter
 19: 100%: Checks: 188, Failures: 0, Errors: 0
-19/65 Test #19: test_sbml_conversion_run ......................   Passed    1.83 sec
+19/65 Test #19: test_sbml_conversion_run ......................   Passed    0.82 sec
 test 20
       Start 20: test_sbml_extension_run
 
@@ -177880,7 +177916,7 @@
 20:  SBMLExtensionRegistry
 20:  TestUnknownPackages
 20: 100%: Checks: 30, Failures: 0, Errors: 0
-20/65 Test #20: test_sbml_extension_run .......................   Passed    0.12 sec
+20/65 Test #20: test_sbml_extension_run .......................   Passed    0.05 sec
 test 21
       Start 21: test_sbml_math_run
 
@@ -177908,7 +177944,7 @@
 21:  TestInferRnFunctions
 21:  TestDerivFunctions
 21: 100%: Checks: 739, Failures: 0, Errors: 0
-21/65 Test #21: test_sbml_math_run ............................   Passed    2.31 sec
+21/65 Test #21: test_sbml_math_run ............................   Passed    1.20 sec
 test 22
       Start 22: test_sbml_sbml_run
 
@@ -178024,7 +178060,7 @@
 22:  SBaseIdName
 22:  Generic Attribute Functions
 22: 100%: Checks: 1746, Failures: 0, Errors: 0
-22/65 Test #22: test_sbml_sbml_run ............................   Passed   11.80 sec
+22/65 Test #22: test_sbml_sbml_run ............................   Passed    5.24 sec
 test 23
       Start 23: test_sbml_units_run
 
@@ -178045,7 +178081,7 @@
 23:  UnitFormulaFormatter3
 23:  DerivedUnitDefinitionUndefined
 23: 100%: Checks: 178, Failures: 0, Errors: 0
-23/65 Test #23: test_sbml_units_run ...........................   Passed    1.19 sec
+23/65 Test #23: test_sbml_units_run ...........................   Passed    0.69 sec
 test 24
       Start 24: test_sbml_util_run
 
@@ -178058,7 +178094,7 @@
 24:  Stack
 24:  StringBuffer
 24: 100%: Checks: 57, Failures: 0, Errors: 0
-24/65 Test #24: test_sbml_util_run ............................   Passed    0.09 sec
+24/65 Test #24: test_sbml_util_run ............................   Passed    0.05 sec
 test 25
       Start 25: test_sbml_validator_run
 
@@ -178135,7 +178171,7 @@
 25: 100%: Checks: 30, Failures: 0
 25: Testing Modeling Practice Constraints (80000 - 89999).
 25: 100%: Checks: 56, Failures: 0
-25/65 Test #25: test_sbml_validator_run .......................   Passed    7.21 sec
+25/65 Test #25: test_sbml_validator_run .......................   Passed    2.79 sec
 test 26
       Start 26: test_sbml_xml_run
 
@@ -178157,11 +178193,11 @@
 26:  XMLErrorLog
 26:  XMLInputStream
 26:  XMLOutputStream
-26: <!-- Created by foo version bar on 2025-01-26 16:39 with libSBML version 5.20.4. -->
+26: <!-- Created by foo version bar on 2026-03-02 02:25 with libSBML version 5.20.4. -->
 26:  XMLAttributesC
 26:  XMLExceptions
 26: 100%: Checks: 131, Failures: 0, Errors: 0
-26/65 Test #26: test_sbml_xml_run .............................   Passed    0.38 sec
+26/65 Test #26: test_sbml_xml_run .............................   Passed    0.17 sec
 test 27
       Start 27: test_java_binding
 
@@ -178170,8 +178206,8 @@
 27: Environment variables: 
 27:  LD_LIBRARY_PATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/java:
 27: Test timeout computed to be: 3000
-27: .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
-27/65 Test #27: test_java_binding .............................   Passed    1.13 sec
+27: ..........................................................................................................................................................................................................................................................
+27/65 Test #27: test_java_binding .............................   Passed    0.29 sec
 test 28
       Start 28: test_java_printversion
 
@@ -178179,7 +178215,7 @@
 28: Working Directory: /build/reproducible-path/libsbml-5.20.4+dfsg/src/bindings/java
 28: Test timeout computed to be: 3000
 28: .
-28/65 Test #28: test_java_printversion ........................   Passed    0.19 sec
+28/65 Test #28: test_java_printversion ........................   Passed    0.15 sec
 test 29
       Start 29: test_perl_binding
 
@@ -178230,9 +178266,9 @@
 29: /build/reproducible-path/libsbml-5.20.4+dfsg/src/bindings/perl/t/07__TestModelHistory.t .......... ok
 29: /build/reproducible-path/libsbml-5.20.4+dfsg/src/bindings/perl/t/07__TestRDFAnnotation2.t ........ ok
 29: All tests successful.
-29: Files=41, Tests=3364, 10 wallclock secs ( 0.39 usr  0.10 sys +  8.29 cusr  1.50 csys = 10.28 CPU)
+29: Files=41, Tests=3364,  6 wallclock secs ( 0.36 usr  0.07 sys +  4.96 cusr  0.93 csys =  6.32 CPU)
 29: Result: PASS
-29/65 Test #29: test_perl_binding .............................   Passed   10.28 sec
+29/65 Test #29: test_perl_binding .............................   Passed    6.08 sec
 test 30
       Start 30: test_python_binding
 
@@ -178245,13 +178281,13 @@
 30:   re_libxml = re.compile('^ USE_LIBXML  \s* = \s* 1', re.X)
 30: /build/reproducible-path/libsbml-5.20.4+dfsg/src/bindings/python/test/sbml/TestReadSBML.py:51: SyntaxWarning: invalid escape sequence '\s'
 30:   re_xerces = re.compile('^ USE_XERCES  \s* = \s* 1', re.X)
-30: ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................<!-- Created by foo version bar on 2025-01-26 16:39 with libSBML version 5.20.4. -->
-30: .........................................................................................................................................................................................................................................................................................................................................................
+30: ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................<!-- Created by foo version bar on 2026-03-02 02:25 with libSBML version 5.20.4. -->
+30: ............................................................................................................................................................................................................................................................................................................................................................................................................................................
 30: ----------------------------------------------------------------------
-30: Ran 1819 tests in 0.509s
+30: Ran 1819 tests in 0.384s
 30: 
 30: OK
-30/65 Test #30: test_python_binding ...........................   Passed    2.37 sec
+30/65 Test #30: test_python_binding ...........................   Passed    1.27 sec
 test 31
       Start 31: test_python_printversion
 
@@ -178260,7 +178296,7 @@
 31: Environment variables: 
 31:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 31: Test timeout computed to be: 3000
-31/65 Test #31: test_python_printversion ......................   Passed    0.27 sec
+31/65 Test #31: test_python_printversion ......................   Passed    0.15 sec
 test 32
       Start 32: test_python_addCVTerms
 
@@ -178269,7 +178305,7 @@
 32: Environment variables: 
 32:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 32: Test timeout computed to be: 3000
-32/65 Test #32: test_python_addCVTerms ........................   Passed    0.27 sec
+32/65 Test #32: test_python_addCVTerms ........................   Passed    0.15 sec
 test 33
       Start 33: test_python_addingEvidenceCodes_1
 
@@ -178278,7 +178314,7 @@
 33: Environment variables: 
 33:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 33: Test timeout computed to be: 3000
-33/65 Test #33: test_python_addingEvidenceCodes_1 .............   Passed    0.27 sec
+33/65 Test #33: test_python_addingEvidenceCodes_1 .............   Passed    0.15 sec
 test 34
       Start 34: test_python_addingEvidenceCodes_2
 
@@ -178287,7 +178323,7 @@
 34: Environment variables: 
 34:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 34: Test timeout computed to be: 3000
-34/65 Test #34: test_python_addingEvidenceCodes_2 .............   Passed    0.36 sec
+34/65 Test #34: test_python_addingEvidenceCodes_2 .............   Passed    0.15 sec
 test 35
       Start 35: test_python_addModelHistory
 
@@ -178300,7 +178336,7 @@
 35: Set created date:      succeeded
 35: Set modified date:     succeeded
 35: Set model history:     unknown
-35/65 Test #35: test_python_addModelHistory ...................   Passed    0.36 sec
+35/65 Test #35: test_python_addModelHistory ...................   Passed    0.15 sec
 test 36
       Start 36: test_python_append_to_note
 
@@ -178317,7 +178353,7 @@
 36: Body after change: 
 36: <body xmlns="http://www.w3.org/1999/xhtml">
 36:   <p xmlns="http://www.w3.org/1999/xhtml">Some notes</p>a new note</body>
-36/65 Test #36: test_python_append_to_note ....................   Passed    0.33 sec
+36/65 Test #36: test_python_append_to_note ....................   Passed    0.16 sec
 test 37
       Start 37: test_python_appendAnnotation
 
@@ -178326,7 +178362,7 @@
 37: Environment variables: 
 37:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 37: Test timeout computed to be: 3000
-37/65 Test #37: test_python_appendAnnotation ..................   Passed    0.27 sec
+37/65 Test #37: test_python_appendAnnotation ..................   Passed    0.16 sec
 test 38
       Start 38: test_python_convertSBML
 
@@ -178339,7 +178375,7 @@
 38: 
 38: Conversion completed.
 38: 
-38/65 Test #38: test_python_convertSBML .......................   Passed    0.26 sec
+38/65 Test #38: test_python_convertSBML .......................   Passed    0.16 sec
 test 39
       Start 39: test_python_createExampleSBML
 
@@ -178357,7 +178393,7 @@
 39: Notice: encountered 1 validation warning in model 'functionExample'.
 39: 
 39: Wrote file 'functiondef.xml'
-39/65 Test #39: test_python_createExampleSBML .................   Passed    0.31 sec
+39/65 Test #39: test_python_createExampleSBML .................   Passed    0.18 sec
 test 40
       Start 40: test_python_createSimpleModel
 
@@ -178409,7 +178445,7 @@
 40:   </model>
 40: </sbml>
 40: 
-40/65 Test #40: test_python_createSimpleModel .................   Passed    0.26 sec
+40/65 Test #40: test_python_createSimpleModel .................   Passed    0.15 sec
 test 41
       Start 41: test_python_echoSBML
 
@@ -178419,7 +178455,7 @@
 41:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 41: Test timeout computed to be: 3000
 41: [OK] Echoed /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml to echoSBML.out.xml
-41/65 Test #41: test_python_echoSBML ..........................   Passed    0.27 sec
+41/65 Test #41: test_python_echoSBML ..........................   Passed    0.15 sec
 test 42
       Start 42: test_python_evaluateCustomMath
 
@@ -178429,7 +178465,7 @@
 42:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 42: Test timeout computed to be: 3000
 42: 2*3+4 = 10.0
-42/65 Test #42: test_python_evaluateCustomMath ................   Passed    0.25 sec
+42/65 Test #42: test_python_evaluateCustomMath ................   Passed    0.16 sec
 test 43
       Start 43: test_python_getAllElementsWithNotes
 
@@ -178440,11 +178476,11 @@
 43: Test timeout computed to be: 3000
 43: 
 43:             filename: /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
-43:       read time (ms): 1.630126953125
+43:       read time (ms): 1.041748046875
 43:     searching ......:
-43:     search time (ms): 0.257568359375
+43:     search time (ms): 0.1455078125
 43:  elements with notes: 0
-43/65 Test #43: test_python_getAllElementsWithNotes ...........   Passed    0.26 sec
+43/65 Test #43: test_python_getAllElementsWithNotes ...........   Passed    0.15 sec
 test 44
       Start 44: test_python_inlineInitialAssignments
 
@@ -178453,7 +178489,7 @@
 44: Environment variables: 
 44:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 44: Test timeout computed to be: 3000
-44/65 Test #44: test_python_inlineInitialAssignments ..........   Passed    0.27 sec
+44/65 Test #44: test_python_inlineInitialAssignments ..........   Passed    0.15 sec
 test 45
       Start 45: test_python_printAnnotation
 
@@ -178464,7 +178500,7 @@
 45: Test timeout computed to be: 3000
 45: filename: /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
 45: 
-45/65 Test #45: test_python_printAnnotation ...................   Passed    0.30 sec
+45/65 Test #45: test_python_printAnnotation ...................   Passed    0.16 sec
 test 46
       Start 46: test_python_printMath
 
@@ -178480,7 +178516,7 @@
 46: 
 46: 
 46: 
-46/65 Test #46: test_python_printMath .........................   Passed    0.26 sec
+46/65 Test #46: test_python_printMath .........................   Passed    0.15 sec
 test 47
       Start 47: test_python_printRegisteredPackages
 
@@ -178500,7 +178536,7 @@
 47: 	qual
 47: 
 47: 
-47/65 Test #47: test_python_printRegisteredPackages ...........   Passed    0.30 sec
+47/65 Test #47: test_python_printRegisteredPackages ...........   Passed    0.16 sec
 test 48
       Start 48: test_python_printSBML
 
@@ -178526,7 +178562,7 @@
 48:              events: 0
 48: 
 48: 
-48/65 Test #48: test_python_printSBML .........................   Passed    0.27 sec
+48/65 Test #48: test_python_printSBML .........................   Passed    0.16 sec
 test 49
       Start 49: test_python_printsupported
 
@@ -178547,7 +178583,7 @@
 49: 	SBML Level: 3 Version: 1
 49: 	SBML Level: 3 Version: 2
 49: 
-49/65 Test #49: test_python_printsupported ....................   Passed    0.31 sec
+49/65 Test #49: test_python_printsupported ....................   Passed    0.15 sec
 test 50
       Start 50: test_python_printUnits
 
@@ -178567,7 +178603,7 @@
 50: Reaction 1: 
 50: Kinetic Law: second (exponent = -1, multiplier = 1, scale = 0), mole (exponent = 1, multiplier = 1, scale = 0)
 50:         undeclared units: no
-50/65 Test #50: test_python_printUnits ........................   Passed    0.30 sec
+50/65 Test #50: test_python_printUnits ........................   Passed    0.15 sec
 test 51
       Start 51: test_python_promoteParameters
 
@@ -178577,7 +178613,7 @@
 51:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 51: Test timeout computed to be: 3000
 51: [OK] wrote promoteParameters.out.xml
-51/65 Test #51: test_python_promoteParameters .................   Passed    0.31 sec
+51/65 Test #51: test_python_promoteParameters .................   Passed    0.15 sec
 test 52
       Start 52: test_python_readSBML
 
@@ -178589,10 +178625,10 @@
 52: 
 52:             filename: /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
 52:            file size: 3930
-52:       read time (ms): 2.2237300872802734
+52:       read time (ms): 1.1968612670898438
 52:  validation error(s): 0
 52: 
-52/65 Test #52: test_python_readSBML ..........................   Passed    0.29 sec
+52/65 Test #52: test_python_readSBML ..........................   Passed    0.15 sec
 test 53
       Start 53: test_python_replaceOneFD
 
@@ -178601,7 +178637,7 @@
 53: Environment variables: 
 53:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 53: Test timeout computed to be: 3000
-53/65 Test #53: test_python_replaceOneFD ......................   Passed    0.38 sec
+53/65 Test #53: test_python_replaceOneFD ......................   Passed    0.15 sec
 test 54
       Start 54: test_python_setIdFromNames
 
@@ -178612,11 +178648,11 @@
 54: Test timeout computed to be: 3000
 54: 
 54:             filename: /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
-54:       read time (ms): 1.646240234375
-54:     rename time (ms): 0.22607421875
-54:      write time (ms): 1.005615234375
+54:       read time (ms): 1.0517578125
+54:     rename time (ms): 0.088134765625
+54:      write time (ms): 0.3984375
 54: 
-54/65 Test #54: test_python_setIdFromNames ....................   Passed    0.36 sec
+54/65 Test #54: test_python_setIdFromNames ....................   Passed    0.15 sec
 test 55
       Start 55: test_python_setNamesFromIds
 
@@ -178627,11 +178663,11 @@
 55: Test timeout computed to be: 3000
 55: 
 55:             filename: /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
-55:       read time (ms): 2.46484375
-55:     rename time (ms): 0.53857421875
-55:      write time (ms): 1.526123046875
+55:       read time (ms): 1.082275390625
+55:     rename time (ms): 0.222412109375
+55:      write time (ms): 0.40869140625
 55: 
-55/65 Test #55: test_python_setNamesFromIds ...................   Passed    0.35 sec
+55/65 Test #55: test_python_setNamesFromIds ...................   Passed    0.15 sec
 test 56
       Start 56: test_python_unsetAnnotation
 
@@ -178640,7 +178676,7 @@
 56: Environment variables: 
 56:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 56: Test timeout computed to be: 3000
-56/65 Test #56: test_python_unsetAnnotation ...................   Passed    0.31 sec
+56/65 Test #56: test_python_unsetAnnotation ...................   Passed    0.15 sec
 test 57
       Start 57: test_python_unsetNotes
 
@@ -178649,7 +178685,7 @@
 57: Environment variables: 
 57:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 57: Test timeout computed to be: 3000
-57/65 Test #57: test_python_unsetNotes ........................   Passed    0.30 sec
+57/65 Test #57: test_python_unsetNotes ........................   Passed    0.15 sec
 test 58
       Start 58: test_python_validateSBML
 
@@ -178661,15 +178697,15 @@
 58: ---------------------------------------------------------------------------
 58:                  filename : /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
 58:          file size (byte) : 3930
-58:            read time (ms) : 1.691818
-58:         c-check time (ms) : 3.301859
+58:            read time (ms) : 1.062155
+58:         c-check time (ms) : 2.045155
 58:       validation error(s) : 0
 58:     (consistency error(s)): 0
 58:     validation warning(s) : 0
 58:   (consistency warning(s)): 0
 58: ---------------------------------------------------------------------------
 58: Validated 1 files, 1 valid files, 0 invalid files
-58/65 Test #58: test_python_validateSBML ......................   Passed    0.28 sec
+58/65 Test #58: test_python_validateSBML ......................   Passed    0.15 sec
 test 59
       Start 59: test_python_stringInput
 
@@ -178682,7 +178718,7 @@
 59: 
 59: <class 'str'>
 59: <class 'str'>
-59/65 Test #59: test_python_stringInput .......................   Passed    0.25 sec
+59/65 Test #59: test_python_stringInput .......................   Passed    0.14 sec
 test 60
       Start 60: test_python_stripPackage
 
@@ -178692,7 +178728,7 @@
 60:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 60: Test timeout computed to be: 3000
 60: [OK] stripped package 'fbc' from /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/fbc/fbc_example1.xml to stripPackage.out.xml
-60/65 Test #60: test_python_stripPackage ......................   Passed    0.32 sec
+60/65 Test #60: test_python_stripPackage ......................   Passed    0.16 sec
 test 61
       Start 61: test_python_fbc_fbc_example1
 
@@ -178701,7 +178737,7 @@
 61: Environment variables: 
 61:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 61: Test timeout computed to be: 3000
-61/65 Test #61: test_python_fbc_fbc_example1 ..................   Passed    0.28 sec
+61/65 Test #61: test_python_fbc_fbc_example1 ..................   Passed    0.15 sec
 test 62
       Start 62: test_python_groups_groups_example1
 
@@ -178710,7 +178746,7 @@
 62: Environment variables: 
 62:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 62: Test timeout computed to be: 3000
-62/65 Test #62: test_python_groups_groups_example1 ............   Passed    0.26 sec
+62/65 Test #62: test_python_groups_groups_example1 ............   Passed    0.16 sec
 test 63
       Start 63: test_python_layout_example1_L3
 
@@ -178719,7 +178755,7 @@
 63: Environment variables: 
 63:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 63: Test timeout computed to be: 3000
-63/65 Test #63: test_python_layout_example1_L3 ................   Passed    0.27 sec
+63/65 Test #63: test_python_layout_example1_L3 ................   Passed    0.15 sec
 test 64
       Start 64: test_python_layout_example1
 
@@ -178728,7 +178764,7 @@
 64: Environment variables: 
 64:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 64: Test timeout computed to be: 3000
-64/65 Test #64: test_python_layout_example1 ...................   Passed    0.29 sec
+64/65 Test #64: test_python_layout_example1 ...................   Passed    0.16 sec
 test 65
       Start 65: test_python_qual_qual_example1
 
@@ -178737,11 +178773,11 @@
 65: Environment variables: 
 65:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 65: Test timeout computed to be: 3000
-65/65 Test #65: test_python_qual_qual_example1 ................   Passed    0.28 sec
+65/65 Test #65: test_python_qual_qual_example1 ................   Passed    0.15 sec
 
 100% tests passed, 0 tests failed out of 65
 
-Total Test time (real) =  65.48 sec
+Total Test time (real) =  30.27 sec
 make[1]: Leaving directory '/build/reproducible-path/libsbml-5.20.4+dfsg/build'
    create-stamp debian/debhelper-build-stamp
    dh_testroot -O--builddir=build -O--buildsystem=cmake -O--no-parallel
@@ -179330,7 +179366,8 @@
 	mv /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/*/${pyv}/site-packages/* /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/${pyv}/dist-packages ; \
     fi ; \
 done
-+ [ -d /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/python3.13/site-packages/ ]
++ for pyv in python3.13
++ '[' -d /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/python3.13/site-packages/ ']'
 + mkdir -p /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/python3.13/dist-packages
 + mv /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/python3.13/site-packages/libsbml /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/python3.13/site-packages/libsbml.pth /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/python3.13/dist-packages
 find /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr -type f -name "*.js" -delete
@@ -179357,15 +179394,17 @@
 	rmdir ${madir}/x86_64-linux-gnu ; \
     fi ; \
 done
-+ + sort
-find debian+ uniq
- -name x86_64-linux-gnu -type d
-+ [ -d debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu ]
-+ echo Moving contents of wrong directory debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu into place
+++ find debian -name x86_64-linux-gnu -type d
+++ sort
+++ uniq
++ for madir in `find debian -name x86_64-linux-gnu -type d | sort | uniq`
++ '[' -d debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu ']'
++ echo 'Moving contents of wrong directory debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu into place'
 Moving contents of wrong directory debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu into place
 + mv debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu/perl5 debian/tmp/usr/lib/x86_64-linux-gnu
 + rmdir debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu
-+ [ -d debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu/x86_64-linux-gnu ]
++ for madir in `find debian -name x86_64-linux-gnu -type d | sort | uniq`
++ '[' -d debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu/x86_64-linux-gnu ']'
 find debian -type f -name "_form*" -delete
 make[1]: Leaving directory '/build/reproducible-path/libsbml-5.20.4+dfsg'
    dh_install -O--builddir=build -O--buildsystem=cmake -O--no-parallel
@@ -179411,19 +179450,19 @@
    dh_md5sums -O--builddir=build -O--buildsystem=cmake -O--no-parallel
    dh_builddeb -O--builddir=build -O--buildsystem=cmake -O--no-parallel
 dpkg-deb: building package 'libsbml5-dev' in '../libsbml5-dev_5.20.4+dfsg-0.1_amd64.deb'.
-dpkg-deb: building package 'python3-sbml5' in '../python3-sbml5_5.20.4+dfsg-0.1_amd64.deb'.
-dpkg-deb: building package 'libsbml5t64-dbgsym' in '../libsbml5t64-dbgsym_5.20.4+dfsg-0.1_amd64.deb'.
-dpkg-deb: building package 'libsbml5-java' in '../libsbml5-java_5.20.4+dfsg-0.1_amd64.deb'.
+dpkg-deb: building package 'libsbml5-perl' in '../libsbml5-perl_5.20.4+dfsg-0.1_amd64.deb'.
 dpkg-deb: building package 'libsbml5t64' in '../libsbml5t64_5.20.4+dfsg-0.1_amd64.deb'.
 dpkg-deb: building package 'python3-sbml5-dbgsym' in '../python3-sbml5-dbgsym_5.20.4+dfsg-0.1_amd64.deb'.
+dpkg-deb: building package 'libsbml5t64-dbgsym' in '../libsbml5t64-dbgsym_5.20.4+dfsg-0.1_amd64.deb'.
+dpkg-deb: building package 'libsbml5-java' in '../libsbml5-java_5.20.4+dfsg-0.1_amd64.deb'.
+dpkg-deb: building package 'python3-sbml5' in '../python3-sbml5_5.20.4+dfsg-0.1_amd64.deb'.
 dpkg-deb: building package 'libsbml5-perl-dbgsym' in '../libsbml5-perl-dbgsym_5.20.4+dfsg-0.1_amd64.deb'.
 dpkg-deb: building package 'libsbml5-java-dbgsym' in '../libsbml5-java-dbgsym_5.20.4+dfsg-0.1_amd64.deb'.
-dpkg-deb: building package 'libsbml5-perl' in '../libsbml5-perl_5.20.4+dfsg-0.1_amd64.deb'.
+dpkg-deb: building package 'python3-sbml5-doc' in '../python3-sbml5-doc_5.20.4+dfsg-0.1_all.deb'.
 dpkg-deb: building package 'libsbml5-octave' in '../libsbml5-octave_5.20.4+dfsg-0.1_amd64.deb'.
-dpkg-deb: building package 'libsbml5-examples' in '../libsbml5-examples_5.20.4+dfsg-0.1_all.deb'.
-dpkg-deb: building package 'libsbml5-doc' in '../libsbml5-doc_5.20.4+dfsg-0.1_all.deb'.
 dpkg-deb: building package 'libsbml5-perl-doc' in '../libsbml5-perl-doc_5.20.4+dfsg-0.1_all.deb'.
-dpkg-deb: building package 'python3-sbml5-doc' in '../python3-sbml5-doc_5.20.4+dfsg-0.1_all.deb'.
+dpkg-deb: building package 'libsbml5-doc' in '../libsbml5-doc_5.20.4+dfsg-0.1_all.deb'.
+dpkg-deb: building package 'libsbml5-examples' in '../libsbml5-examples_5.20.4+dfsg-0.1_all.deb'.
  dpkg-genbuildinfo --build=binary -O../libsbml_5.20.4+dfsg-0.1_amd64.buildinfo
  dpkg-genchanges --build=binary -O../libsbml_5.20.4+dfsg-0.1_amd64.changes
 dpkg-genchanges: info: binary-only upload (no source code included)
@@ -179432,12 +179471,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: including full source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/1374404/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/1374404/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/1681150 and its subdirectories
-I: Current time: Sun Jan 26 16:52:37 -12 2025
-I: pbuilder-time-stamp: 1737953557
+I: removing directory /srv/workspace/pbuilder/1374404 and its subdirectories
+I: Current time: Mon Mar  2 02:35:52 +14 2026
+I: pbuilder-time-stamp: 1772368552