Diff of the two buildlogs:
--
--- b1/build.log 2024-11-07 09:53:25.013416306 +0000
+++ b2/build.log 2024-11-07 10:59:44.555606324 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Wed Nov 6 16:28:36 -12 2024
-I: pbuilder-time-stamp: 1730953716
+I: Current time: Thu Dec 11 06:16:31 +14 2025
+I: pbuilder-time-stamp: 1765383391
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
@@ -38,52 +38,84 @@
dpkg-source: info: applying doxygen_mathjax_path.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/623940/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/2989641/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos5-amd64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Dec 10 16:16 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/2989641/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/2989641/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build/reproducible-path'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='amd64'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
- DISTRIBUTION='trixie'
- HOME='/root'
- HOST_ARCH='amd64'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
+ BASH_VERSION='5.2.32(1)-release'
+ BUILDDIR=/build/reproducible-path
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=amd64
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 '
+ DIRSTACK=()
+ DISTRIBUTION=trixie
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=x86_64
+ HOST_ARCH=amd64
IFS='
'
- INVOCATION_ID='81ebf20986a74b499a5f6795e0b27565'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='623940'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=b194e8f95bc14472a8f35caa7e73dcc0
+ LANG=C
+ LANGUAGE=et_EE:et
+ LC_ALL=C
+ MACHTYPE=x86_64-pc-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=2989641
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Hmg7jtXf/pbuilderrc_uCxv --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Hmg7jtXf/b1 --logfile b1/build.log libsbml_5.20.2+dfsg-8.dsc'
- SUDO_GID='110'
- SUDO_UID='105'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://46.16.76.132:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Hmg7jtXf/pbuilderrc_SrsC --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Hmg7jtXf/b2 --logfile b2/build.log libsbml_5.20.2+dfsg-8.dsc'
+ SUDO_GID=110
+ SUDO_UID=105
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://213.165.73.152:3128
I: uname -a
- Linux ionos1-amd64 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux
+ Linux i-capture-the-hostname 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux
I: ls -l /bin
- lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/623940/tmp/hooks/D02_print_environment finished
+ lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/2989641/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -933,7 +965,7 @@
Get: 772 http://deb.debian.org/debian trixie/main amd64 r-base-dev all 4.4.1-3 [4512 B]
Get: 773 http://deb.debian.org/debian trixie/main amd64 rdfind amd64 1.6.0-1+b1 [44.7 kB]
Get: 774 http://deb.debian.org/debian trixie/main amd64 swig amd64 4.2.1-1 [1437 kB]
-Fetched 496 MB in 30s (16.4 MB/s)
+Fetched 496 MB in 7s (75.3 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libkrb5support0:amd64.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19970 files and directories currently installed.)
@@ -3418,8 +3450,8 @@
Setting up tzdata (2024a-4) ...
Current default time zone: 'Etc/UTC'
-Local time is now: Thu Nov 7 04:33:17 UTC 2024.
-Universal Time is now: Thu Nov 7 04:33:17 UTC 2024.
+Local time is now: Wed Dec 10 16:18:07 UTC 2025.
+Universal Time is now: Wed Dec 10 16:18:07 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up libxcb-present0:amd64 (1.17.0-2+b1) ...
@@ -4593,7 +4625,11 @@
Building tag database...
-> Finished parsing the build-deps
I: Building the package
-I: Running cd /build/reproducible-path/libsbml-5.20.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libsbml_5.20.2+dfsg-8_source.changes
+I: user script /srv/workspace/pbuilder/2989641/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for trixie
+I: user script /srv/workspace/pbuilder/2989641/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/libsbml-5.20.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libsbml_5.20.2+dfsg-8_source.changes
dpkg-buildpackage: info: source package libsbml
dpkg-buildpackage: info: source version 5.20.2+dfsg-8
dpkg-buildpackage: info: source distribution unstable
@@ -4762,9 +4798,9 @@
To contact the developers directly, email libsbml-team@googlegroups.com
- Configured on host 'ionos1-amd64'
+ Configured on host 'i-capture-the-hostname'
host type = Linux
- host operating system = Linux 6.1.0-26-amd64
+ host operating system = Linux 6.10.11+bpo-amd64
host CPU architecture = x86_64
General build flags:
@@ -4816,8 +4852,8 @@
-- Compression support is enabled for .bz2 files
--
----------------------------------------------------------------------
--- Configuring done (5.9s)
--- Generating done (0.6s)
+-- Configuring done (3.0s)
+-- Generating done (0.4s)
CMake Warning:
Manually-specified variables were not used by the project:
@@ -40261,19 +40297,13 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/EventAssignment.h:1180: warning: Found unknown command '@_tclass_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2524: warning: Found unknown command '@_treturn_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2524: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/validator/GroupsSBMLErrorTable.h:55: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.cpp:2592: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1656: warning: Found unknown command '@_tclass_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:560: warning: Found unknown command '@_tif_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:561: warning: Found unknown command '@_tmemberof_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:562: warning: Found unknown command '@_tendif_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:622: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.cpp:2592: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1656: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/validator/GroupsSBMLErrorTable.h:55: warning: Found unknown command '@_tcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaFormatter.cpp:82: warning: Found unknown command '@_tcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaFormatter.h:91: warning: Found unknown command '@_tcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5030: warning: Found unknown command '@_tsbmlconstant_t'
@@ -40282,11 +40312,11 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:987: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1086: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1086: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/CompartmentReference.h:923: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/CompartmentReference.h:923: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
@@ -40294,8 +40324,6 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:46: warning: Found unknown command '@_tenum_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4126: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4126: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Group.h:1230: warning: Found unknown command '@_tclass_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Group.h:1230: warning: Found unknown command '@_tclass_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:488: warning: Found unknown command '@_tif_t'
@@ -40303,12 +40331,13 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:490: warning: Found unknown command '@_tendif_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:512: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:513: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2052: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2052: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:355: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:807: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1243: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1243: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2257: warning: Found unknown command '@_tc_t'
@@ -40319,15 +40348,14 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/RDFAnnotationParser.cpp:1545: warning: Found unknown command '@_tendcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1676: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1676: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:950: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:950: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Member.h:1054: warning: Found unknown command '@_tc_t'
@@ -40336,23 +40364,27 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag found
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag <_tcode_t> found
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:72: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_tldquo_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:807: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/RDFAnnotationParser.cpp:1545: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:761: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:761: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/MathML.cpp:2089: warning: Found unknown command '@_tcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2260: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2260: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.cpp:1218: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1164: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:467: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:467: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_treturn_t'
@@ -40362,10 +40394,12 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:618: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:545: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
@@ -40377,106 +40411,52 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:741: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1246: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1246: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.cpp:1218: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1164: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/MathML.cpp:2089: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:72: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_tldquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLError.h:1086: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLErrorTable.h:52: warning: Found unknown command '@_tcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/validator/CompSBMLError.h:44: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:360: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:361: warning: Found unknown command '@_tbrief_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_tldquo_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_trdquo_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLExtension.cpp:473: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLExtension.h:694: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1356: warning: explicit link request to '_tFluxBoundOperation_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1358: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:87: warning: Found unknown command '@_tif_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:88: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:89: warning: Found unknown command '@_tendif_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3911: warning: Found unknown command '@_tsbmlconstant_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3911: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:1244: warning: Found unknown command '@_tmemberof_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_treturn_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tp_t'
@@ -40487,76 +40467,91 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4092: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4092: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:1244: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:87: warning: Found unknown command '@_tif_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:88: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:89: warning: Found unknown command '@_tendif_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag found
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/FunctionDefinition.cpp:1315: warning: Found unknown command '@_tendcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/FunctionDefinition.h:999: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/FunctionDefinition.h:1000: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.cpp:388: warning: Found unknown command '@_tendcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:473: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:474: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1356: warning: explicit link request to '_tFluxBoundOperation_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1358: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4405: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4405: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/MultiSpeciesType.h:1311: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBasePlugin.h:1263: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:727: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1644: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1644: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:460: warning: Found unknown command '@_tendcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:474: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:727: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:360: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:361: warning: Found unknown command '@_tbrief_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_tldquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLExtension.cpp:473: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLExtension.h:694: warning: Found unknown command '@_tendcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag found
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:955: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:935: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.cpp:364: warning: Found unknown command '@_tendcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:497: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:498: warning: Found unknown command '@_tp_t'
@@ -40566,55 +40561,82 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Trigger.h:1116: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1828: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1828: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:935: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/validator/CompSBMLError.h:44: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBasePlugin.h:1263: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/MultiSpeciesType.h:1311: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1956: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1956: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLError.h:1086: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLErrorLog.cpp:400: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLErrorLog.h:424: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4028: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4028: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:903: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:516: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
@@ -40627,17 +40649,37 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:903: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:516: warning: Found unknown command '@_tenum_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:691: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:691: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.h:87: warning: Found unknown command '@_tstruct_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.h:88: warning: Found unknown command '@_tsbmlbrief_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLErrorLog.cpp:400: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLErrorLog.h:424: warning: Found unknown command '@_tclass_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:1396: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:1396: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:493: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
@@ -40646,60 +40688,39 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/MathML.cpp:2206: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:105: warning: Found unknown command '@_tif_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:106: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:107: warning: Found unknown command '@_tendif_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.cpp:247: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:337: warning: Found unknown command '@_tenum_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:871: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag found
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1578: warning: explicit link request to '_tInputSign_t_t' could not be resolved
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1578: warning: explicit link request to '_tInputSign_t_t' could not be resolved
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:426: warning: Found unknown command '@_tenum_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:427: warning: Found unknown command '@_tbrief_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:428: warning: Unsupported symbol &_tldquo_t; found
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:428: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1288: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1288: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:337: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/MathML.cpp:2206: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:105: warning: Found unknown command '@_tif_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:106: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:107: warning: Found unknown command '@_tendif_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag found
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:890: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.cpp:247: warning: Found unknown command '@_tendcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
@@ -40707,40 +40728,55 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:126: warning: Found unknown command '@_tif_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:127: warning: Found unknown command '@_tmemberof_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:128: warning: Found unknown command '@_tendif_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:890: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLConvert.cpp:67: warning: Found unknown command '@_tcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProductRef.h:788: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2006: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2006: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.cpp:2000: warning: Found unknown command '@_tendcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1485: warning: Found unknown command '@_tclass_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLError.h:1058: warning: Found unknown command '@_tcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ListOf.h:830: warning: Unsupported xml/html tag <_tem_t> found
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ListOf.h:830: warning: Unsupported xml/html tag found
@@ -40756,23 +40792,23 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:3058: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:3058: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:3058: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:713: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:713: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp:548: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:1589: warning: explicit link request to '_tModelQualifierType_t_t' could not be resolved
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:1589: warning: explicit link request to '_tModelQualifierType_t_t' could not be resolved
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
@@ -63902,15 +63938,6 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2442: warning: Found unknown command '@_tmemberof_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2452: warning: Found unknown command '@_tparam_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2454: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1895: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1859: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1883: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1907: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2396: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1789: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tc_t'
GeneProductAssociation.cpp...
Generating docs for file GeneProductAssociation.h...
Generating docs for file GeneProductRef.cpp...
@@ -63994,7 +64021,16 @@
Generating docs for file GraphicalObject.cpp...
Generating docs for file GraphicalObject.h...
Generating docs for file Layout.cpp...
-Generating/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1778: warning: Found unknown command '@_tp_t'
+Generating/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1895: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1859: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1883: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1907: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2396: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1789: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1778: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2280: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2205: warning: Found unknown command '@_tp_t'
@@ -84484,7 +84520,7 @@
writing tag file...
Running plantuml with JAVA...
Running dot...
-Generating dot graphs using 21 parallel threads...
+Generating dot graphs using 43 parallel threads...
Running dot for graph 1/793
Running dot for graph 2/793
Running dot for graph 3/793
@@ -89046,19 +89082,13 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/EventAssignment.h:1180: warning: Found unknown command '@_tclass_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2524: warning: Found unknown command '@_treturn_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2524: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/validator/GroupsSBMLErrorTable.h:55: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.cpp:2592: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1656: warning: Found unknown command '@_tclass_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:560: warning: Found unknown command '@_tif_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:561: warning: Found unknown command '@_tmemberof_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:562: warning: Found unknown command '@_tendif_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:622: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.cpp:2592: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1656: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/validator/GroupsSBMLErrorTable.h:55: warning: Found unknown command '@_tcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaFormatter.cpp:82: warning: Found unknown command '@_tcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaFormatter.h:91: warning: Found unknown command '@_tcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5030: warning: Found unknown command '@_tsbmlconstant_t'
@@ -89067,11 +89097,11 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:987: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1086: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1086: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/CompartmentReference.h:923: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/CompartmentReference.h:923: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
@@ -89079,8 +89109,6 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:46: warning: Found unknown command '@_tenum_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4126: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4126: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Group.h:1230: warning: Found unknown command '@_tclass_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Group.h:1230: warning: Found unknown command '@_tclass_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:488: warning: Found unknown command '@_tif_t'
@@ -89088,12 +89116,13 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:490: warning: Found unknown command '@_tendif_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:512: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:513: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2052: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2052: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:355: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:807: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1243: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1243: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2257: warning: Found unknown command '@_tc_t'
@@ -89104,15 +89133,14 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/RDFAnnotationParser.cpp:1545: warning: Found unknown command '@_tendcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1676: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1676: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:950: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:950: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Member.h:1054: warning: Found unknown command '@_tc_t'
@@ -89121,23 +89149,27 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag found
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag <_tcode_t> found
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:72: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_tldquo_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:807: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/RDFAnnotationParser.cpp:1545: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:761: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:761: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/MathML.cpp:2089: warning: Found unknown command '@_tcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2260: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2260: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.cpp:1218: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1164: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:467: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:467: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_treturn_t'
@@ -89147,10 +89179,12 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:618: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:545: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
@@ -89162,106 +89196,52 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:741: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1246: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1246: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.cpp:1218: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1164: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/MathML.cpp:2089: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:72: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_tldquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLError.h:1086: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLErrorTable.h:52: warning: Found unknown command '@_tcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/validator/CompSBMLError.h:44: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:360: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:361: warning: Found unknown command '@_tbrief_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_tldquo_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_trdquo_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLExtension.cpp:473: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLExtension.h:694: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1356: warning: explicit link request to '_tFluxBoundOperation_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1358: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:87: warning: Found unknown command '@_tif_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:88: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:89: warning: Found unknown command '@_tendif_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3911: warning: Found unknown command '@_tsbmlconstant_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3911: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:1244: warning: Found unknown command '@_tmemberof_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_treturn_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tp_t'
@@ -89272,76 +89252,91 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4092: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4092: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:1244: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:87: warning: Found unknown command '@_tif_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:88: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:89: warning: Found unknown command '@_tendif_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag found
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/FunctionDefinition.cpp:1315: warning: Found unknown command '@_tendcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/FunctionDefinition.h:999: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/FunctionDefinition.h:1000: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.cpp:388: warning: Found unknown command '@_tendcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:473: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:474: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1356: warning: explicit link request to '_tFluxBoundOperation_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1358: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4405: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4405: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/MultiSpeciesType.h:1311: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBasePlugin.h:1263: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:727: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1644: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1644: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:460: warning: Found unknown command '@_tendcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:474: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:727: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:360: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:361: warning: Found unknown command '@_tbrief_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_tldquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLExtension.cpp:473: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLExtension.h:694: warning: Found unknown command '@_tendcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag found
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:955: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:935: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.cpp:364: warning: Found unknown command '@_tendcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:497: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:498: warning: Found unknown command '@_tp_t'
@@ -89351,55 +89346,82 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Trigger.h:1116: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1828: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1828: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:935: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/validator/CompSBMLError.h:44: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBasePlugin.h:1263: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/MultiSpeciesType.h:1311: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1956: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1956: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLError.h:1086: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLErrorLog.cpp:400: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLErrorLog.h:424: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4028: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4028: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:903: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:516: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
@@ -89412,17 +89434,37 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:903: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:516: warning: Found unknown command '@_tenum_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:691: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:691: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.h:87: warning: Found unknown command '@_tstruct_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.h:88: warning: Found unknown command '@_tsbmlbrief_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLErrorLog.cpp:400: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLErrorLog.h:424: warning: Found unknown command '@_tclass_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:1396: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:1396: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:493: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
@@ -89431,60 +89473,39 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/MathML.cpp:2206: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:105: warning: Found unknown command '@_tif_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:106: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:107: warning: Found unknown command '@_tendif_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.cpp:247: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:337: warning: Found unknown command '@_tenum_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:871: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag found
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1578: warning: explicit link request to '_tInputSign_t_t' could not be resolved
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1578: warning: explicit link request to '_tInputSign_t_t' could not be resolved
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:426: warning: Found unknown command '@_tenum_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:427: warning: Found unknown command '@_tbrief_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:428: warning: Unsupported symbol &_tldquo_t; found
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:428: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1288: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1288: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:337: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/MathML.cpp:2206: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:105: warning: Found unknown command '@_tif_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:106: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:107: warning: Found unknown command '@_tendif_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag found
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:890: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.cpp:247: warning: Found unknown command '@_tendcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
@@ -89492,40 +89513,55 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:126: warning: Found unknown command '@_tif_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:127: warning: Found unknown command '@_tmemberof_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:128: warning: Found unknown command '@_tendif_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:890: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLConvert.cpp:67: warning: Found unknown command '@_tcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProductRef.h:788: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2006: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2006: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.cpp:2000: warning: Found unknown command '@_tendcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1485: warning: Found unknown command '@_tclass_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLError.h:1058: warning: Found unknown command '@_tcond_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ListOf.h:830: warning: Unsupported xml/html tag <_tem_t> found
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ListOf.h:830: warning: Unsupported xml/html tag found
@@ -89541,23 +89577,23 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:3058: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:3058: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:3058: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:713: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:713: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp:548: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:1589: warning: explicit link request to '_tModelQualifierType_t_t' could not be resolved
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:1589: warning: explicit link request to '_tModelQualifierType_t_t' could not be resolved
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
@@ -135147,7 +135183,6 @@
Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h...
Pa/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.cpp:413: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp:973: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.h:126: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
rsing file /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h...
Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp...
Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp...
@@ -135182,7 +135217,8 @@
Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h...
Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h...
Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp...
-Parsing file /build/reproducible-path/libsbml-5.20./build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.cpp:960: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
+Parsing file /build/reproducible-path/libsbml-5.20./build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.h:126: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.cpp:960: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1242: warning: the \endcond does not have a corresponding \cond in this file
2+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp...
Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.h...
@@ -141959,7 +141995,7 @@
writing tag file...
Running plantuml with JAVA...
Running dot...
-Generating dot graphs using 21 parallel threads...
+Generating dot graphs using 43 parallel threads...
Running dot for graph 1/1596
Running dot for graph 2/1596
Running dot for graph 3/1596
@@ -155643,10 +155679,6 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:222: warning: included file callExternalValidator.py is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:225: warning: included file convertSBML.py is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:228: warning: included file createExampleSBML.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH
-path/libsbml-5.20.2+dfsg/docs/src/libsbml-math.txt...
Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-math.txt...
Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-news.txt...
@@ -155733,7 +155765,11 @@
Generating docs for example callExternalValidator.py...
Generating docs for example convertSBML.py...
Generating docs for example createExampleSBML.py...
-Generating docs fo/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH
+Generating docs fo/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:247: warning: included file printRegisteredPackages.py is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:250: warning: included file printSBML.py is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:253: warning: included file printSupported.py is not found. Check your EXAMPLE_PATH
@@ -156354,7 +156390,7 @@
writing tag file...
Running plantuml with JAVA...
Running dot...
-Generating dot graphs using 21 parallel threads...
+Generating dot graphs using 43 parallel threads...
Running dot for graph 1/127
Running dot for graph 2/127
Running dot for graph 3/127
@@ -157245,13 +157281,6 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:222: warning: included file callExternalValidator.py is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:225: warning: included file convertSBML.py is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:228: warning: included file createExampleSBML.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:247: warning: included file printRegisteredPackages.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:250: warning: included file printSBML.py is not found. Check your EXAMPLE_PATH
-path/libsbml-5.20.2+dfsg/docs/src/libsbml-math.txt...
Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-math.txt...
Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-news.txt...
@@ -157338,7 +157367,14 @@
Generating docs for example callExternalValidator.py...
Generating docs for example convertSBML.py...
Generating docs for example createExampleSBML.py...
-Generating docs fo/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:253: warning: included file printSupported.py is not found. Check your EXAMPLE_PATH
+Generating docs fo/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:247: warning: included file printRegisteredPackages.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:250: warning: included file printSBML.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:253: warning: included file printSupported.py is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:256: warning: included file printUnits.py is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:259: warning: included file readSBML.py is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:263: warning: included file setIdFromNames.py is not found. Check your EXAMPLE_PATH
@@ -157956,7 +157992,7 @@
writing tag file...
Running plantuml with JAVA...
Running dot...
-Generating dot graphs using 21 parallel threads...
+Generating dot graphs using 43 parallel threads...
Running dot for graph 1/7
Running dot for graph 2/7
Running dot for graph 3/7
@@ -163501,10 +163537,6 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:330: warning: included file translateMath.cpp is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:333: warning: included file unsetAnnotation.cpp is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:336: warning: included file unsetNotes.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH
l/packages/qual/validator/QualSBMLError.h...
Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h...
Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h...
@@ -163599,7 +163631,11 @@
Generating docs for example translateMath.cpp...
Generating docs for example unsetAnnotation.cpp...
Generating docs for example unsetNotes.cpp...
-Generating docs for example va/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH
+Generating docs for example va/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:351: warning: included file spec_example4.cpp is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:356: warning: included file fbc_example1.cpp is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:360: warning: included file convertCobraToFbc.cpp is not found. Check your EXAMPLE_PATH
@@ -166188,7 +166224,7 @@
Generating Perl module output...
Running plantuml with JAVA...
Running dot...
-Generating dot graphs using 21 parallel threads...
+Generating dot graphs using 43 parallel threads...
Running dot for graph 1/1594
Running dot for graph 2/1594
Running dot for graph 3/1594
@@ -176050,8 +176086,6 @@
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:330: warning: included file translateMath.cpp is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:333: warning: included file unsetAnnotation.cpp is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:336: warning: included file unsetNotes.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH
l/packages/qual/validator/QualSBMLError.h...
Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h...
Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h...
@@ -176146,7 +176180,9 @@
Generating docs for example translateMath.cpp...
Generating docs for example unsetAnnotation.cpp...
Generating docs for example unsetNotes.cpp...
-Generating docs for example va/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH
+Generating docs for example va/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH
/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:351: warning: included file spec_example4.cpp is not found. Check your EXAMPLE_PATH
@@ -179151,7 +179187,7 @@
writing tag file...
Running plantuml with JAVA...
Running dot...
-Generating dot graphs using 21 parallel threads...
+Generating dot graphs using 43 parallel threads...
Running dot for graph 1/1
Patching output file 1/1
type lookup cache used 1/65536 hits=0 misses=1
@@ -179587,7 +179623,7 @@
1: TestMultipleNamespaces
1: SBMLCompCheckConsistency
1: 100%: Checks: 14, Failures: 0, Errors: 0
- 1/67 Test #1: test_comp_extensions_run ...................... Passed 1.29 sec
+ 1/67 Test #1: test_comp_extensions_run ...................... Passed 0.44 sec
test 2
Start 2: test_comp_sbase_run
@@ -179608,7 +179644,7 @@
2: comp_sBaseRef
2: comp_submodel
2: 100%: Checks: 105, Failures: 0, Errors: 0
- 2/67 Test #2: test_comp_sbase_run ........................... Passed 2.01 sec
+ 2/67 Test #2: test_comp_sbase_run ........................... Passed 0.65 sec
test 3
Start 3: test_comp_util_run
@@ -179626,7 +179662,7 @@
3: SBMLCompFlatteningNewFlags
3: SBMLCompFlatteningConverterStripPackage
3: 100%: Checks: 365, Failures: 0, Errors: 0
- 3/67 Test #3: test_comp_util_run ............................ Passed 21.25 sec
+ 3/67 Test #3: test_comp_util_run ............................ Passed 6.62 sec
test 4
Start 4: test_comp_validator_run
@@ -179646,7 +179682,7 @@
4: 100%: Checks: 14, Failures: 0
4: Testing Unit Consistency Constraints (10500 - 10599).
4: 100%: Checks: 22, Failures: 0
- 4/67 Test #4: test_comp_validator_run ....................... Passed 2.75 sec
+ 4/67 Test #4: test_comp_validator_run ....................... Passed 0.59 sec
test 5
Start 5: test_sbml_package_fbc_run
@@ -179660,7 +179696,7 @@
5: ReadFbcExtension
5: FbcAssociation
5: 100%: Checks: 38, Failures: 0, Errors: 0
- 5/67 Test #5: test_sbml_package_fbc_run ..................... Passed 1.05 sec
+ 5/67 Test #5: test_sbml_package_fbc_run ..................... Passed 0.16 sec
test 6
Start 6: test_fbc_validator_run
@@ -179678,7 +179714,7 @@
6: 100%: Checks: 248, Failures: 0
6: Testing Id Consistency Constraints (10300 - 10399).
6: 100%: Checks: 13, Failures: 0
- 6/67 Test #6: test_fbc_validator_run ........................ Passed 2.32 sec
+ 6/67 Test #6: test_fbc_validator_run ........................ Passed 0.59 sec
test 7
Start 7: test_extension_package_groups_run
@@ -179692,7 +179728,7 @@
7: ReadGroupsExtension
7: GroupsModelPlugin
7: 100%: Checks: 25, Failures: 0, Errors: 0
- 7/67 Test #7: test_extension_package_groups_run ............. Passed 0.69 sec
+ 7/67 Test #7: test_extension_package_groups_run ............. Passed 0.07 sec
test 8
Start 8: test_groups_validator_run
@@ -179710,7 +179746,7 @@
8: 100%: Checks: 95, Failures: 0
8: Testing Id Consistency Constraints (10300 - 10399).
8: 100%: Checks: 11, Failures: 0
- 8/67 Test #8: test_groups_validator_run ..................... Passed 1.00 sec
+ 8/67 Test #8: test_groups_validator_run ..................... Passed 0.09 sec
test 9
Start 9: test_l3v2extendedmath_validator_run
@@ -179728,7 +179764,7 @@
9: 100%: Checks: 4, Failures: 0
9: Testing Unit Consistency Constraints (10500 - 10599).
9: 100%: Checks: 6, Failures: 0
- 9/67 Test #9: test_l3v2extendedmath_validator_run ........... Passed 0.28 sec
+ 9/67 Test #9: test_l3v2extendedmath_validator_run ........... Passed 0.02 sec
test 10
Start 10: test_extension_package_l3v2extendedmath_run
@@ -179742,7 +179778,7 @@
10: ReadL3v2EMExtension
10: ReadWriteL3v2Infix
10: 100%: Checks: 18, Failures: 0, Errors: 0
-10/67 Test #10: test_extension_package_l3v2extendedmath_run ... Passed 0.49 sec
+10/67 Test #10: test_extension_package_l3v2extendedmath_run ... Passed 0.05 sec
test 11
Start 11: test_sbml_package_layout_run
@@ -179771,7 +179807,7 @@
11: SBMLHandler
11: LayoutWriting
11: 100%: Checks: 288, Failures: 0, Errors: 0
-11/67 Test #11: test_sbml_package_layout_run .................. Passed 5.41 sec
+11/67 Test #11: test_sbml_package_layout_run .................. Passed 0.56 sec
test 12
Start 12: test_layout_validator_run
@@ -179789,7 +179825,7 @@
12: 100%: Checks: 223, Failures: 0
12: Testing Id Consistency Constraints (10300 - 10399).
12: 100%: Checks: 18, Failures: 0
-12/67 Test #12: test_layout_validator_run ..................... Passed 2.97 sec
+12/67 Test #12: test_layout_validator_run ..................... Passed 0.63 sec
test 13
Start 13: test_extension_package_qual_run
@@ -179803,7 +179839,7 @@
13: ReadQualExtension
13: GetAllElements
13: 100%: Checks: 20, Failures: 0, Errors: 0
-13/67 Test #13: test_extension_package_qual_run ............... Passed 0.43 sec
+13/67 Test #13: test_extension_package_qual_run ............... Passed 0.06 sec
test 14
Start 14: test_sbml_package_qual_run
@@ -179821,7 +179857,7 @@
14: ListOfFunctionTerms
14: CopyAndClone
14: 100%: Checks: 73, Failures: 0, Errors: 0
-14/67 Test #14: test_sbml_package_qual_run .................... Passed 1.20 sec
+14/67 Test #14: test_sbml_package_qual_run .................... Passed 3.05 sec
test 15
Start 15: test_qual_validator_run
@@ -179841,7 +179877,7 @@
15: 100%: Checks: 4, Failures: 0
15: Testing Math Consistency Constraints (10200 - 10299).
15: 100%: Checks: 3, Failures: 0
-15/67 Test #15: test_qual_validator_run ....................... Passed 0.76 sec
+15/67 Test #15: test_qual_validator_run ....................... Passed 0.14 sec
test 16
Start 16: test_sbml_package_render_run
@@ -179880,7 +179916,7 @@
16: RenderReading
16: RenderWriting
16: 100%: Checks: 136, Failures: 0, Errors: 0
-16/67 Test #16: test_sbml_package_render_run .................. Passed 3.74 sec
+16/67 Test #16: test_sbml_package_render_run .................. Passed 0.64 sec
test 17
Start 17: test_render_validator_run
@@ -179896,7 +179932,7 @@
17:
17: Testing General XML Consistency Constraints (20000 - 29999).
17: 100%: Checks: 111, Failures: 0
-17/67 Test #17: test_render_validator_run ..................... Passed 0.97 sec
+17/67 Test #17: test_render_validator_run ..................... Passed 0.10 sec
test 18
Start 18: test_sbml_annotation_run
@@ -179923,7 +179959,7 @@
18: RDFAnnotationV4
18: UnusualRDFAnnotation
18: 100%: Checks: 193, Failures: 0, Errors: 0
-18/67 Test #18: test_sbml_annotation_run ...................... Passed 4.26 sec
+18/67 Test #18: test_sbml_annotation_run ...................... Passed 0.47 sec
test 19
Start 19: test_sbml_conversion_run
@@ -179945,7 +179981,7 @@
19: RateOfConverter
19: SBMLRateRuleConverter
19: 100%: Checks: 188, Failures: 0, Errors: 0
-19/67 Test #19: test_sbml_conversion_run ...................... Passed 6.51 sec
+19/67 Test #19: test_sbml_conversion_run ...................... Passed 0.93 sec
test 20
Start 20: test_sbml_extension_run
@@ -179964,7 +180000,7 @@
20: SBMLExtensionRegistry
20: TestUnknownPackages
20: 100%: Checks: 30, Failures: 0, Errors: 0
-20/67 Test #20: test_sbml_extension_run ....................... Passed 0.65 sec
+20/67 Test #20: test_sbml_extension_run ....................... Passed 0.04 sec
test 21
Start 21: test_sbml_math_run
@@ -179992,7 +180028,7 @@
21: TestInferRnFunctions
21: TestDerivFunctions
21: 100%: Checks: 739, Failures: 0, Errors: 0
-21/67 Test #21: test_sbml_math_run ............................ Passed 12.76 sec
+21/67 Test #21: test_sbml_math_run ............................ Passed 1.21 sec
test 22
Start 22: test_sbml_sbml_run
@@ -180108,7 +180144,7 @@
22: SBaseIdName
22: Generic Attribute Functions
22: 100%: Checks: 1746, Failures: 0, Errors: 0
-22/67 Test #22: test_sbml_sbml_run ............................ Passed 31.73 sec
+22/67 Test #22: test_sbml_sbml_run ............................ Passed 5.71 sec
test 23
Start 23: test_sbml_units_run
@@ -180129,7 +180165,7 @@
23: UnitFormulaFormatter3
23: DerivedUnitDefinitionUndefined
23: 100%: Checks: 178, Failures: 0, Errors: 0
-23/67 Test #23: test_sbml_units_run ........................... Passed 5.69 sec
+23/67 Test #23: test_sbml_units_run ........................... Passed 0.60 sec
test 24
Start 24: test_sbml_util_run
@@ -180142,7 +180178,7 @@
24: Stack
24: StringBuffer
24: 100%: Checks: 57, Failures: 0, Errors: 0
-24/67 Test #24: test_sbml_util_run ............................ Passed 0.93 sec
+24/67 Test #24: test_sbml_util_run ............................ Passed 0.05 sec
test 25
Start 25: test_sbml_validator_run
@@ -180219,7 +180255,7 @@
25: 100%: Checks: 30, Failures: 0
25: Testing Modeling Practice Constraints (80000 - 89999).
25: 100%: Checks: 56, Failures: 0
-25/67 Test #25: test_sbml_validator_run ....................... Passed 43.97 sec
+25/67 Test #25: test_sbml_validator_run ....................... Passed 4.53 sec
test 26
Start 26: test_sbml_xml_run
@@ -180241,11 +180277,11 @@
26: XMLErrorLog
26: XMLInputStream
26: XMLOutputStream
-26:
+26:
26: XMLAttributesC
26: XMLExceptions
26: 100%: Checks: 131, Failures: 0, Errors: 0
-26/67 Test #26: test_sbml_xml_run ............................. Passed 2.28 sec
+26/67 Test #26: test_sbml_xml_run ............................. Passed 0.16 sec
test 27
Start 27: test_csharp_bindings
@@ -180259,7 +180295,7 @@
27: ...........................................................................................................................................................................................................................
27: All tests passed.
27:
-27/67 Test #27: test_csharp_bindings .......................... Passed 1.96 sec
+27/67 Test #27: test_csharp_bindings .......................... Passed 0.27 sec
test 28
Start 28: test_csharp_bindings_full
@@ -180273,14 +180309,14 @@
28: Running the tests with:
28: Data Directory: /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/test/test-data
28:
-28: .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
+28: .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
28: .....................................
28:
28: Total Number of Tests 1830, failures 0
28:
28: All tests passed.
28:
-28/67 Test #28: test_csharp_bindings_full ..................... Passed 7.82 sec
+28/67 Test #28: test_csharp_bindings_full ..................... Passed 2.00 sec
test 29
Start 29: test_java_binding
@@ -180289,8 +180325,8 @@
29: Environment variables:
29: LD_LIBRARY_PATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/java:
29: Test timeout computed to be: 3000
-29: .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
-29/67 Test #29: test_java_binding ............................. Passed 7.31 sec
+29: ..........................................................................................................................................................................................................................................................
+29/67 Test #29: test_java_binding ............................. Passed 0.29 sec
test 30
Start 30: test_java_printversion
@@ -180298,7 +180334,7 @@
30: Working Directory: /build/reproducible-path/libsbml-5.20.2+dfsg/src/bindings/java
30: Test timeout computed to be: 3000
30: .
-30/67 Test #30: test_java_printversion ........................ Passed 1.33 sec
+30/67 Test #30: test_java_printversion ........................ Passed 0.13 sec
test 31
Start 31: test_perl_binding
@@ -180349,9 +180385,9 @@
31: /build/reproducible-path/libsbml-5.20.2+dfsg/src/bindings/perl/t/07__TestModelHistory.t .......... ok
31: /build/reproducible-path/libsbml-5.20.2+dfsg/src/bindings/perl/t/07__TestRDFAnnotation2.t ........ ok
31: All tests successful.
-31: Files=41, Tests=3364, 40 wallclock secs ( 0.63 usr 0.14 sys + 13.64 cusr 2.28 csys = 16.69 CPU)
+31: Files=41, Tests=3364, 6 wallclock secs ( 0.34 usr 0.05 sys + 4.90 cusr 0.82 csys = 6.11 CPU)
31: Result: PASS
-31/67 Test #31: test_perl_binding ............................. Passed 40.59 sec
+31/67 Test #31: test_perl_binding ............................. Passed 5.92 sec
test 32
Start 32: test_python_binding
@@ -180366,13 +180402,13 @@
32: re_libxml = re.compile('^ USE_LIBXML \s* = \s* 1', re.X)
32: /build/reproducible-path/libsbml-5.20.2+dfsg/src/bindings/python/test/sbml/TestReadSBML.py:51: SyntaxWarning: invalid escape sequence '\s'
32: re_xerces = re.compile('^ USE_XERCES \s* = \s* 1', re.X)
-32: ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
-32: .........................................................................................................................................................................................................................................................................................................................................................
+32: ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
+32: ............................................................................................................................................................................................................................................................................................................................................................................................................................................
32: ----------------------------------------------------------------------
-32: Ran 1819 tests in 1.927s
+32: Ran 1819 tests in 0.309s
32:
32: OK
-32/67 Test #32: test_python_binding ........................... Passed 7.51 sec
+32/67 Test #32: test_python_binding ........................... Passed 1.22 sec
test 33
Start 33: test_python_printversion
@@ -180381,7 +180417,7 @@
33: Environment variables:
33: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
33: Test timeout computed to be: 3000
-33/67 Test #33: test_python_printversion ...................... Passed 0.56 sec
+33/67 Test #33: test_python_printversion ...................... Passed 0.13 sec
test 34
Start 34: test_python_addCVTerms
@@ -180390,7 +180426,7 @@
34: Environment variables:
34: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
34: Test timeout computed to be: 3000
-34/67 Test #34: test_python_addCVTerms ........................ Passed 0.80 sec
+34/67 Test #34: test_python_addCVTerms ........................ Passed 0.13 sec
test 35
Start 35: test_python_addingEvidenceCodes_1
@@ -180399,7 +180435,7 @@
35: Environment variables:
35: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
35: Test timeout computed to be: 3000
-35/67 Test #35: test_python_addingEvidenceCodes_1 ............. Passed 0.93 sec
+35/67 Test #35: test_python_addingEvidenceCodes_1 ............. Passed 0.49 sec
test 36
Start 36: test_python_addingEvidenceCodes_2
@@ -180408,7 +180444,7 @@
36: Environment variables:
36: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
36: Test timeout computed to be: 3000
-36/67 Test #36: test_python_addingEvidenceCodes_2 ............. Passed 1.40 sec
+36/67 Test #36: test_python_addingEvidenceCodes_2 ............. Passed 0.13 sec
test 37
Start 37: test_python_addModelHistory
@@ -180421,7 +180457,7 @@
37: Set created date: succeeded
37: Set modified date: succeeded
37: Set model history: unknown
-37/67 Test #37: test_python_addModelHistory ................... Passed 0.91 sec
+37/67 Test #37: test_python_addModelHistory ................... Passed 0.13 sec
test 38
Start 38: test_python_append_to_note
@@ -180438,7 +180474,7 @@
38: Body after change:
38:
38: Some notes
a new note
-38/67 Test #38: test_python_append_to_note .................... Passed 0.95 sec
+38/67 Test #38: test_python_append_to_note .................... Passed 0.13 sec
test 39
Start 39: test_python_appendAnnotation
@@ -180447,7 +180483,7 @@
39: Environment variables:
39: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
39: Test timeout computed to be: 3000
-39/67 Test #39: test_python_appendAnnotation .................. Passed 0.41 sec
+39/67 Test #39: test_python_appendAnnotation .................. Passed 0.13 sec
test 40
Start 40: test_python_convertSBML
@@ -180460,7 +180496,7 @@
40:
40: Conversion completed.
40:
-40/67 Test #40: test_python_convertSBML ....................... Passed 1.15 sec
+40/67 Test #40: test_python_convertSBML ....................... Passed 0.15 sec
test 41
Start 41: test_python_createExampleSBML
@@ -180478,7 +180514,7 @@
41: Notice: encountered 1 validation warning in model 'functionExample'.
41:
41: Wrote file 'functiondef.xml'
-41/67 Test #41: test_python_createExampleSBML ................. Passed 0.97 sec
+41/67 Test #41: test_python_createExampleSBML ................. Passed 0.14 sec
test 42
Start 42: test_python_createSimpleModel
@@ -180530,7 +180566,7 @@
42:
42:
42:
-42/67 Test #42: test_python_createSimpleModel ................. Passed 1.34 sec
+42/67 Test #42: test_python_createSimpleModel ................. Passed 0.13 sec
test 43
Start 43: test_python_echoSBML
@@ -180540,7 +180576,7 @@
43: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
43: Test timeout computed to be: 3000
43: [OK] Echoed /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml to echoSBML.out.xml
-43/67 Test #43: test_python_echoSBML .......................... Passed 1.48 sec
+43/67 Test #43: test_python_echoSBML .......................... Passed 0.13 sec
test 44
Start 44: test_python_evaluateCustomMath
@@ -180550,7 +180586,7 @@
44: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
44: Test timeout computed to be: 3000
44: 2*3+4 = 10.0
-44/67 Test #44: test_python_evaluateCustomMath ................ Passed 0.62 sec
+44/67 Test #44: test_python_evaluateCustomMath ................ Passed 0.13 sec
test 45
Start 45: test_python_getAllElementsWithNotes
@@ -180561,11 +180597,11 @@
45: Test timeout computed to be: 3000
45:
45: filename: /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
-45: read time (ms): 7.68359375
+45: read time (ms): 1.030029296875
45: searching ......:
-45: search time (ms): 0.3876953125
+45: search time (ms): 0.13427734375
45: elements with notes: 0
-45/67 Test #45: test_python_getAllElementsWithNotes ........... Passed 0.92 sec
+45/67 Test #45: test_python_getAllElementsWithNotes ........... Passed 0.13 sec
test 46
Start 46: test_python_inlineInitialAssignments
@@ -180574,7 +180610,7 @@
46: Environment variables:
46: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
46: Test timeout computed to be: 3000
-46/67 Test #46: test_python_inlineInitialAssignments .......... Passed 1.19 sec
+46/67 Test #46: test_python_inlineInitialAssignments .......... Passed 0.13 sec
test 47
Start 47: test_python_printAnnotation
@@ -180585,7 +180621,7 @@
47: Test timeout computed to be: 3000
47: filename: /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
47:
-47/67 Test #47: test_python_printAnnotation ................... Passed 1.16 sec
+47/67 Test #47: test_python_printAnnotation ................... Passed 0.13 sec
test 48
Start 48: test_python_printMath
@@ -180601,7 +180637,7 @@
48:
48:
48:
-48/67 Test #48: test_python_printMath ......................... Passed 1.31 sec
+48/67 Test #48: test_python_printMath ......................... Passed 0.13 sec
test 49
Start 49: test_python_printRegisteredPackages
@@ -180621,7 +180657,7 @@
49: qual
49:
49:
-49/67 Test #49: test_python_printRegisteredPackages ........... Passed 1.16 sec
+49/67 Test #49: test_python_printRegisteredPackages ........... Passed 0.13 sec
test 50
Start 50: test_python_printSBML
@@ -180647,7 +180683,7 @@
50: events: 0
50:
50:
-50/67 Test #50: test_python_printSBML ......................... Passed 0.71 sec
+50/67 Test #50: test_python_printSBML ......................... Passed 0.14 sec
test 51
Start 51: test_python_printsupported
@@ -180668,7 +180704,7 @@
51: SBML Level: 3 Version: 1
51: SBML Level: 3 Version: 2
51:
-51/67 Test #51: test_python_printsupported .................... Passed 0.43 sec
+51/67 Test #51: test_python_printsupported .................... Passed 0.13 sec
test 52
Start 52: test_python_printUnits
@@ -180688,7 +180724,7 @@
52: Reaction 1:
52: Kinetic Law: second (exponent = -1, multiplier = 1, scale = 0), mole (exponent = 1, multiplier = 1, scale = 0)
52: undeclared units: no
-52/67 Test #52: test_python_printUnits ........................ Passed 1.01 sec
+52/67 Test #52: test_python_printUnits ........................ Passed 0.14 sec
test 53
Start 53: test_python_promoteParameters
@@ -180698,7 +180734,7 @@
53: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
53: Test timeout computed to be: 3000
53: [OK] wrote promoteParameters.out.xml
-53/67 Test #53: test_python_promoteParameters ................. Passed 0.62 sec
+53/67 Test #53: test_python_promoteParameters ................. Passed 0.14 sec
test 54
Start 54: test_python_readSBML
@@ -180710,10 +180746,10 @@
54:
54: filename: /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
54: file size: 3930
-54: read time (ms): 1.7578601837158203
+54: read time (ms): 1.1289119720458984
54: validation error(s): 0
54:
-54/67 Test #54: test_python_readSBML .......................... Passed 0.54 sec
+54/67 Test #54: test_python_readSBML .......................... Passed 0.14 sec
test 55
Start 55: test_python_replaceOneFD
@@ -180722,7 +180758,7 @@
55: Environment variables:
55: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
55: Test timeout computed to be: 3000
-55/67 Test #55: test_python_replaceOneFD ...................... Passed 1.10 sec
+55/67 Test #55: test_python_replaceOneFD ...................... Passed 0.14 sec
test 56
Start 56: test_python_setIdFromNames
@@ -180733,11 +180769,11 @@
56: Test timeout computed to be: 3000
56:
56: filename: /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
-56: read time (ms): 2.560546875
-56: rename time (ms): 0.30029296875
-56: write time (ms): 1.258056640625
+56: read time (ms): 0.999755859375
+56: rename time (ms): 0.100830078125
+56: write time (ms): 0.361572265625
56:
-56/67 Test #56: test_python_setIdFromNames .................... Passed 1.17 sec
+56/67 Test #56: test_python_setIdFromNames .................... Passed 0.14 sec
test 57
Start 57: test_python_setNamesFromIds
@@ -180748,11 +180784,11 @@
57: Test timeout computed to be: 3000
57:
57: filename: /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
-57: read time (ms): 7.0439453125
-57: rename time (ms): 0.510986328125
-57: write time (ms): 1.00732421875
+57: read time (ms): 0.96484375
+57: rename time (ms): 0.190185546875
+57: write time (ms): 0.393310546875
57:
-57/67 Test #57: test_python_setNamesFromIds ................... Passed 0.90 sec
+57/67 Test #57: test_python_setNamesFromIds ................... Passed 0.13 sec
test 58
Start 58: test_python_unsetAnnotation
@@ -180761,7 +180797,7 @@
58: Environment variables:
58: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
58: Test timeout computed to be: 3000
-58/67 Test #58: test_python_unsetAnnotation ................... Passed 0.94 sec
+58/67 Test #58: test_python_unsetAnnotation ................... Passed 0.14 sec
test 59
Start 59: test_python_unsetNotes
@@ -180770,7 +180806,7 @@
59: Environment variables:
59: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
59: Test timeout computed to be: 3000
-59/67 Test #59: test_python_unsetNotes ........................ Passed 1.11 sec
+59/67 Test #59: test_python_unsetNotes ........................ Passed 0.15 sec
test 60
Start 60: test_python_validateSBML
@@ -180782,15 +180818,15 @@
60: ---------------------------------------------------------------------------
60: filename : /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
60: file size (byte) : 3930
-60: read time (ms) : 2.008200
-60: c-check time (ms) : 3.465652
+60: read time (ms) : 1.072645
+60: c-check time (ms) : 1.953840
60: validation error(s) : 0
60: (consistency error(s)): 0
60: validation warning(s) : 0
60: (consistency warning(s)): 0
60: ---------------------------------------------------------------------------
60: Validated 1 files, 1 valid files, 0 invalid files
-60/67 Test #60: test_python_validateSBML ...................... Passed 0.55 sec
+60/67 Test #60: test_python_validateSBML ...................... Passed 0.15 sec
test 61
Start 61: test_python_stringInput
@@ -180803,7 +180839,7 @@
61:
61:
61:
-61/67 Test #61: test_python_stringInput ....................... Passed 0.65 sec
+61/67 Test #61: test_python_stringInput ....................... Passed 0.13 sec
test 62
Start 62: test_python_stripPackage
@@ -180813,7 +180849,7 @@
62: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
62: Test timeout computed to be: 3000
62: [OK] stripped package 'fbc' from /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/fbc/fbc_example1.xml to stripPackage.out.xml
-62/67 Test #62: test_python_stripPackage ...................... Passed 0.85 sec
+62/67 Test #62: test_python_stripPackage ...................... Passed 0.14 sec
test 63
Start 63: test_python_fbc_fbc_example1
@@ -180822,7 +180858,7 @@
63: Environment variables:
63: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
63: Test timeout computed to be: 3000
-63/67 Test #63: test_python_fbc_fbc_example1 .................. Passed 1.64 sec
+63/67 Test #63: test_python_fbc_fbc_example1 .................. Passed 0.13 sec
test 64
Start 64: test_python_groups_groups_example1
@@ -180831,7 +180867,7 @@
64: Environment variables:
64: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
64: Test timeout computed to be: 3000
-64/67 Test #64: test_python_groups_groups_example1 ............ Passed 0.45 sec
+64/67 Test #64: test_python_groups_groups_example1 ............ Passed 0.14 sec
test 65
Start 65: test_python_layout_example1_L3
@@ -180840,7 +180876,7 @@
65: Environment variables:
65: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
65: Test timeout computed to be: 3000
-65/67 Test #65: test_python_layout_example1_L3 ................ Passed 1.24 sec
+65/67 Test #65: test_python_layout_example1_L3 ................ Passed 0.13 sec
test 66
Start 66: test_python_layout_example1
@@ -180849,7 +180885,7 @@
66: Environment variables:
66: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
66: Test timeout computed to be: 3000
-66/67 Test #66: test_python_layout_example1 ................... Passed 1.70 sec
+66/67 Test #66: test_python_layout_example1 ................... Passed 0.16 sec
test 67
Start 67: test_python_qual_qual_example1
@@ -180858,11 +180894,11 @@
67: Environment variables:
67: PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
67: Test timeout computed to be: 3000
-67/67 Test #67: test_python_qual_qual_example1 ................ Passed 1.40 sec
+67/67 Test #67: test_python_qual_qual_example1 ................ Passed 0.13 sec
100% tests passed, 0 tests failed out of 67
-Total Test time (real) = 258.73 sec
+Total Test time (real) = 43.17 sec
make[1]: Leaving directory '/build/reproducible-path/libsbml-5.20.2+dfsg/build'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--builddir=build -O--buildsystem=cmake -O--no-parallel
@@ -181454,7 +181490,8 @@
mv /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/*/${pyv}/site-packages/* /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/${pyv}/dist-packages ; \
fi ; \
done
-+ [ -d /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/python3.12/site-packages/ ]
++ for pyv in python3.12
++ '[' -d /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/python3.12/site-packages/ ']'
+ mkdir -p /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/python3.12/dist-packages
+ mv /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/python3.12/site-packages/libsbml /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/python3.12/site-packages/libsbml.pth /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/python3.12/dist-packages
find /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr -type f -name "*.js" -delete
@@ -181481,15 +181518,17 @@
rmdir ${madir}/x86_64-linux-gnu ; \
fi ; \
done
-+ find debian -name x86_64-linux-gnu -type d
-+ + sort
-uniq
-+ [ -d debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu ]
-+ echo Moving contents of wrong directory debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu into place
+++ find debian -name x86_64-linux-gnu -type d
+++ sort
+++ uniq
++ for madir in `find debian -name x86_64-linux-gnu -type d | sort | uniq`
++ '[' -d debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu ']'
++ echo 'Moving contents of wrong directory debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu into place'
Moving contents of wrong directory debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu into place
+ mv debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu/perl5 debian/tmp/usr/lib/x86_64-linux-gnu
+ rmdir debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu
-+ [ -d debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu/x86_64-linux-gnu ]
++ for madir in `find debian -name x86_64-linux-gnu -type d | sort | uniq`
++ '[' -d debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu/x86_64-linux-gnu ']'
find debian -type f -name "_form*" -delete
make[1]: Leaving directory '/build/reproducible-path/libsbml-5.20.2+dfsg'
dh_install -O--builddir=build -O--buildsystem=cmake -O--no-parallel
@@ -181543,23 +181582,23 @@
dh_gencontrol -O--builddir=build -O--buildsystem=cmake -O--no-parallel
dh_md5sums -O--builddir=build -O--buildsystem=cmake -O--no-parallel
dh_builddeb -O--builddir=build -O--buildsystem=cmake -O--no-parallel
+dpkg-deb: building package 'libsbml5t64-dbgsym' in '../libsbml5t64-dbgsym_5.20.2+dfsg-8_amd64.deb'.
+dpkg-deb: building package 'libsbml5-dev' in '../libsbml5-dev_5.20.2+dfsg-8_amd64.deb'.
dpkg-deb: building package 'libsbml5t64' in '../libsbml5t64_5.20.2+dfsg-8_amd64.deb'.
+dpkg-deb: building package 'python3-sbml5' in '../python3-sbml5_5.20.2+dfsg-8_amd64.deb'.
dpkg-deb: building package 'python3-sbml5-dbgsym' in '../python3-sbml5-dbgsym_5.20.2+dfsg-8_amd64.deb'.
-dpkg-deb: building package 'libsbml5-dev' in '../libsbml5-dev_5.20.2+dfsg-8_amd64.deb'.
dpkg-deb: building package 'libsbml5-java-dbgsym' in '../libsbml5-java-dbgsym_5.20.2+dfsg-8_amd64.deb'.
-dpkg-deb: building package 'python3-sbml5' in '../python3-sbml5_5.20.2+dfsg-8_amd64.deb'.
-dpkg-deb: building package 'libsbml5-cil' in '../libsbml5-cil_5.20.2+dfsg-8_amd64.deb'.
-dpkg-deb: building package 'libsbml5t64-dbgsym' in '../libsbml5t64-dbgsym_5.20.2+dfsg-8_amd64.deb'.
-dpkg-deb: building package 'python3-sbml5-doc' in '../python3-sbml5-doc_5.20.2+dfsg-8_all.deb'.
+dpkg-deb: building package 'libsbml5-java' in '../libsbml5-java_5.20.2+dfsg-8_amd64.deb'.
+dpkg-deb: building package 'libsbml5-perl' in '../libsbml5-perl_5.20.2+dfsg-8_amd64.deb'.
dpkg-deb: building package 'libsbml5-perl-dbgsym' in '../libsbml5-perl-dbgsym_5.20.2+dfsg-8_amd64.deb'.
-dpkg-deb: building package 'libsbml5-doc' in '../libsbml5-doc_5.20.2+dfsg-8_all.deb'.
-dpkg-deb: building package 'libsbml5-perl-doc' in '../libsbml5-perl-doc_5.20.2+dfsg-8_all.deb'.
+dpkg-deb: building package 'libsbml5-cil' in '../libsbml5-cil_5.20.2+dfsg-8_amd64.deb'.
+dpkg-deb: building package 'libsbml5-octave' in '../libsbml5-octave_5.20.2+dfsg-8_amd64.deb'.
+dpkg-deb: building package 'libsbml5-cil-dbgsym' in '../libsbml5-cil-dbgsym_5.20.2+dfsg-8_amd64.deb'.
dpkg-deb: building package 'libsbml5-examples' in '../libsbml5-examples_5.20.2+dfsg-8_all.deb'.
dpkg-deb: building package 'libsbml5-cil-doc' in '../libsbml5-cil-doc_5.20.2+dfsg-8_all.deb'.
-dpkg-deb: building package 'libsbml5-java' in '../libsbml5-java_5.20.2+dfsg-8_amd64.deb'.
-dpkg-deb: building package 'libsbml5-cil-dbgsym' in '../libsbml5-cil-dbgsym_5.20.2+dfsg-8_amd64.deb'.
-dpkg-deb: building package 'libsbml5-octave' in '../libsbml5-octave_5.20.2+dfsg-8_amd64.deb'.
-dpkg-deb: building package 'libsbml5-perl' in '../libsbml5-perl_5.20.2+dfsg-8_amd64.deb'.
+dpkg-deb: building package 'libsbml5-doc' in '../libsbml5-doc_5.20.2+dfsg-8_all.deb'.
+dpkg-deb: building package 'libsbml5-perl-doc' in '../libsbml5-perl-doc_5.20.2+dfsg-8_all.deb'.
+dpkg-deb: building package 'python3-sbml5-doc' in '../python3-sbml5-doc_5.20.2+dfsg-8_all.deb'.
dpkg-genbuildinfo --build=binary -O../libsbml_5.20.2+dfsg-8_amd64.buildinfo
dpkg-genchanges --build=binary -O../libsbml_5.20.2+dfsg-8_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
@@ -181568,12 +181607,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/2989641/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/2989641/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/623940 and its subdirectories
-I: Current time: Wed Nov 6 21:53:23 -12 2024
-I: pbuilder-time-stamp: 1730973203
+I: removing directory /srv/workspace/pbuilder/2989641 and its subdirectories
+I: Current time: Thu Dec 11 07:22:43 +14 2025
+I: pbuilder-time-stamp: 1765387363