Diff of the two buildlogs: -- --- b1/build.log 2024-04-30 14:18:49.051778631 +0000 +++ b2/build.log 2024-04-30 14:19:58.500829980 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Apr 30 02:17:49 -12 2024 -I: pbuilder-time-stamp: 1714486669 +I: Current time: Tue Jun 3 10:41:52 +14 2025 +I: pbuilder-time-stamp: 1748896912 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,51 +30,83 @@ dpkg-source: info: applying pass_cflags_during_build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3724531/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1870614/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 2 20:42 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1870614/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1870614/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='86ba0eec3fe94b82b1d6f549a74c5c8b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3724531' - PS1='# ' - PS2='> ' + INVOCATION_ID=9ca2ede3c8f34bc29551238408344c0b + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1870614 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JxRuIFef/pbuilderrc_4o17 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JxRuIFef/b1 --logfile b1/build.log libpll_0.3.2-5.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JxRuIFef/pbuilderrc_xl6t --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JxRuIFef/b2 --logfile b2/build.log libpll_0.3.2-5.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.1.0-20-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 23 11:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3724531/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 24 13:34 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1870614/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -152,7 +184,7 @@ Get: 32 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] -Fetched 21.4 MB in 0s (77.3 MB/s) +Fetched 21.4 MB in 0s (72.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package autoconf-archive. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19901 files and directories currently installed.) @@ -304,7 +336,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libpll-0.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpll_0.3.2-5_source.changes +I: user script /srv/workspace/pbuilder/1870614/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1870614/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libpll-0.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libpll_0.3.2-5_source.changes dpkg-buildpackage: info: source package libpll dpkg-buildpackage: info: source version 0.3.2-5 dpkg-buildpackage: info: source distribution unstable @@ -485,8 +521,8 @@ make[2]: Entering directory '/build/reproducible-path/libpll-0.3.2' Making all in src make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' -/bin/bash ../ylwrap parse_rtree.y y.tab.c parse_rtree.c y.tab.h `echo parse_rtree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_rtree.output -- bison -y -d -p `/usr/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_rtree"` -/bin/bash ../ylwrap parse_utree.y y.tab.c parse_utree.c y.tab.h `echo parse_utree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_utree.output -- bison -y -d -p `/usr/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_utree"` +/bin/sh ../ylwrap parse_rtree.y y.tab.c parse_rtree.c y.tab.h `echo parse_rtree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_rtree.output -- bison -y -d -p `/usr/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_rtree"` +/bin/sh ../ylwrap parse_utree.y y.tab.c parse_utree.c y.tab.h `echo parse_utree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_utree.output -- bison -y -d -p `/usr/bin/sed -n 's/.*_\(.*\)/pll_\1_/p' <<<"parse_utree"` /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y:102.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc] 102 | %error-verbose | ^~~~~~~~~~~~~~ @@ -525,148 +561,148 @@ /build/reproducible-path/libpll-0.3.2/src/parse_utree.y:164.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 164 | %destructor { free($$); } label | ^~~~~~~~~~~ -/build/reproducible-path/libpll-0.3.2/src/parse_utree.y: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] /build/reproducible-path/libpll-0.3.2/src/parse_rtree.y: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] -updating parse_utree.h +/build/reproducible-path/libpll-0.3.2/src/parse_utree.y: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] updating parse_rtree.h +updating parse_utree.h make all-am make[4]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fasta.lo `test -f 'fasta.c' || echo './'`fasta.c -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-gamma.lo `test -f 'gamma.c' || echo './'`gamma.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-fasta.lo `test -f 'fasta.c' || echo './'`fasta.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-gamma.lo `test -f 'gamma.c' || echo './'`gamma.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c fasta.c -fPIC -DPIC -o .libs/libpll_la-fasta.o -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-likelihood.lo `test -f 'likelihood.c' || echo './'`likelihood.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-likelihood.lo `test -f 'likelihood.c' || echo './'`likelihood.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c gamma.c -fPIC -DPIC -o .libs/libpll_la-gamma.o -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-list.lo `test -f 'list.c' || echo './'`list.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-list.lo `test -f 'list.c' || echo './'`list.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c likelihood.c -fPIC -DPIC -o .libs/libpll_la-likelihood.o -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-maps.lo `test -f 'maps.c' || echo './'`maps.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-maps.lo `test -f 'maps.c' || echo './'`maps.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c list.c -fPIC -DPIC -o .libs/libpll_la-list.o -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-models.lo `test -f 'models.c' || echo './'`models.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-models.lo `test -f 'models.c' || echo './'`models.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c maps.c -fPIC -DPIC -o .libs/libpll_la-maps.o -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-pll.lo `test -f 'pll.c' || echo './'`pll.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-pll.lo `test -f 'pll.c' || echo './'`pll.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c models.c -fPIC -DPIC -o .libs/libpll_la-models.o -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-output.lo `test -f 'output.c' || echo './'`output.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-output.lo `test -f 'output.c' || echo './'`output.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-utree.lo `test -f 'utree.c' || echo './'`utree.c libtool: 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-fPIC -msse3 -g -c -o libsimd_sse_la-fast_parsimony_sse.lo `test -f 'fast_parsimony_sse.c' || echo './'`fast_parsimony_sse.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c fast_parsimony_sse.c -fPIC -DPIC -o .libs/libsimd_sse_la-fast_parsimony_sse.o -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_utree.lo `test -f 'lex_utree.c' || echo './'`lex_utree.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_utree.lo `test -f 'lex_utree.c' || echo './'`lex_utree.c +/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_rtree.lo `test -f 'lex_rtree.c' || echo './'`lex_rtree.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_pmatrix_sse.c -o libsimd_sse_la-core_pmatrix_sse.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c -fPIC -DPIC -o .libs/libpll_la-lex_utree.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c fast_parsimony_avx.c -o libsimd_avx_la-fast_parsimony_avx.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c -fPIC -DPIC -o .libs/libpll_la-lex_rtree.o +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_likelihood_avx.c -o libsimd_avx_la-core_likelihood_avx.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_partials_sse.c -o libsimd_sse_la-core_partials_sse.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_derivatives_avx.c -o libsimd_avx_la-core_derivatives_avx.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -c core_likelihood_avx.c -o libsimd_avx_la-core_likelihood_avx.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c -o libpll_la-lex_rtree.lo `test -f 'lex_rtree.c' || echo './'`lex_rtree.c -/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -Wl,-z,relro -Wl,-z,now -o libsimd_avx2.la libsimd_avx2_la-core_partials_avx2.lo libsimd_avx2_la-core_derivatives_avx2.lo libsimd_avx2_la-core_pmatrix_avx2.lo libsimd_avx2_la-core_likelihood_avx2.lo libsimd_avx2_la-fast_parsimony_avx2.lo -lm -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c -fPIC -DPIC -o .libs/libpll_la-lex_rtree.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_pmatrix_sse.c -o libsimd_sse_la-core_pmatrix_sse.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mfma -mavx2 -g -Wl,-z,relro -Wl,-z,now -o libsimd_avx2.la libsimd_avx2_la-core_partials_avx2.lo libsimd_avx2_la-core_derivatives_avx2.lo libsimd_avx2_la-core_pmatrix_avx2.lo libsimd_avx2_la-core_likelihood_avx2.lo libsimd_avx2_la-fast_parsimony_avx2.lo -lm +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_derivatives_sse.c -o libsimd_sse_la-core_derivatives_sse.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_likelihood_sse.c -o libsimd_sse_la-core_likelihood_sse.o >/dev/null 2>&1 +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c fast_parsimony_sse.c -o libsimd_sse_la-fast_parsimony_sse.o >/dev/null 2>&1 libtool: link: ar cr .libs/libsimd_avx2.a .libs/libsimd_avx2_la-core_partials_avx2.o .libs/libsimd_avx2_la-core_derivatives_avx2.o .libs/libsimd_avx2_la-core_pmatrix_avx2.o .libs/libsimd_avx2_la-core_likelihood_avx2.o .libs/libsimd_avx2_la-fast_parsimony_avx2.o libtool: link: ranlib .libs/libsimd_avx2.a libtool: link: ( cd ".libs" && rm -f "libsimd_avx2.la" && ln -s "../libsimd_avx2.la" "libsimd_avx2.la" ) -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_derivatives_sse.c -o libsimd_sse_la-core_derivatives_sse.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c fast_parsimony_sse.c -o libsimd_sse_la-fast_parsimony_sse.o >/dev/null 2>&1 -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -c core_likelihood_sse.c -o libsimd_sse_la-core_likelihood_sse.o >/dev/null 2>&1 lex_rtree.l: In function 'pll_rtree_lex': lex_rtree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 62 | strncpy(mem+(*dstlen),src,srclen); @@ -690,16 +726,16 @@ lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] lex_utree.l:62:3: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_rtree.c -o libpll_la-lex_rtree.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -Wl,-z,relro -Wl,-z,now -o libsimd_avx.la libsimd_avx_la-core_partials_avx.lo libsimd_avx_la-core_derivatives_avx.lo libsimd_avx_la-core_pmatrix_avx.lo libsimd_avx_la-core_likelihood_avx.lo libsimd_avx_la-fast_parsimony_avx.lo -lm libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -c lex_utree.c -o libpll_la-lex_utree.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -mavx -g -Wl,-z,relro -Wl,-z,now -o libsimd_avx.la libsimd_avx_la-core_partials_avx.lo libsimd_avx_la-core_derivatives_avx.lo libsimd_avx_la-core_pmatrix_avx.lo libsimd_avx_la-core_likelihood_avx.lo libsimd_avx_la-fast_parsimony_avx.lo -lm libtool: link: ar cr .libs/libsimd_avx.a .libs/libsimd_avx_la-core_partials_avx.o .libs/libsimd_avx_la-core_derivatives_avx.o .libs/libsimd_avx_la-core_pmatrix_avx.o .libs/libsimd_avx_la-core_likelihood_avx.o .libs/libsimd_avx_la-fast_parsimony_avx.o libtool: link: ranlib .libs/libsimd_avx.a libtool: link: ( cd ".libs" && rm -f "libsimd_avx.la" && ln -s "../libsimd_avx.la" "libsimd_avx.la" ) -/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -Wl,-z,relro -Wl,-z,now -o libsimd_sse.la libsimd_sse_la-core_partials_sse.lo libsimd_sse_la-core_derivatives_sse.lo libsimd_sse_la-core_likelihood_sse.lo libsimd_sse_la-core_pmatrix_sse.lo libsimd_sse_la-fast_parsimony_sse.lo -lm +/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -msse3 -g -Wl,-z,relro -Wl,-z,now -o libsimd_sse.la libsimd_sse_la-core_partials_sse.lo libsimd_sse_la-core_derivatives_sse.lo libsimd_sse_la-core_likelihood_sse.lo libsimd_sse_la-core_pmatrix_sse.lo libsimd_sse_la-fast_parsimony_sse.lo -lm libtool: link: ar cr .libs/libsimd_sse.a .libs/libsimd_sse_la-core_partials_sse.o .libs/libsimd_sse_la-core_derivatives_sse.o .libs/libsimd_sse_la-core_likelihood_sse.o .libs/libsimd_sse_la-core_pmatrix_sse.o .libs/libsimd_sse_la-fast_parsimony_sse.o libtool: link: ranlib .libs/libsimd_sse.a libtool: link: ( cd ".libs" && rm -f "libsimd_sse.la" && ln -s "../libsimd_sse.la" "libsimd_sse.la" ) -/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libpll.la -rpath /usr/lib/x86_64-linux-gnu libpll_la-fasta.lo libpll_la-gamma.lo libpll_la-likelihood.lo libpll_la-list.lo libpll_la-maps.lo libpll_la-models.lo libpll_la-pll.lo libpll_la-output.lo libpll_la-utree.lo libpll_la-rtree.lo libpll_la-derivatives.lo libpll_la-partials.lo libpll_la-compress.lo libpll_la-utree_moves.lo libpll_la-utree_svg.lo libpll_la-parsimony.lo libpll_la-core_derivatives.lo libpll_la-core_partials.lo libpll_la-core_pmatrix.lo libpll_la-core_likelihood.lo libpll_la-parse_utree.lo libpll_la-parse_rtree.lo libpll_la-lex_utree.lo libpll_la-lex_rtree.lo libpll_la-fast_parsimony.lo libpll_la-stepwise.lo libpll_la-random.lo libpll_la-phylip.lo libpll_la-hardware.lo libsimd_avx2.la libsimd_avx.la libsimd_sse.la -lm +/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libpll-0.3.2/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -fPIC -g -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libpll.la -rpath /usr/lib/x86_64-linux-gnu libpll_la-fasta.lo libpll_la-gamma.lo libpll_la-likelihood.lo libpll_la-list.lo libpll_la-maps.lo libpll_la-models.lo libpll_la-pll.lo libpll_la-output.lo libpll_la-utree.lo libpll_la-rtree.lo libpll_la-derivatives.lo libpll_la-partials.lo libpll_la-compress.lo libpll_la-utree_moves.lo libpll_la-utree_svg.lo libpll_la-parsimony.lo libpll_la-core_derivatives.lo libpll_la-core_partials.lo libpll_la-core_pmatrix.lo libpll_la-core_likelihood.lo libpll_la-parse_utree.lo libpll_la-parse_rtree.lo libpll_la-lex_utree.lo libpll_la-lex_rtree.lo libpll_la-fast_parsimony.lo libpll_la-stepwise.lo libpll_la-random.lo libpll_la-phylip.lo libpll_la-hardware.lo libsimd_avx2.la libsimd_avx.la libsimd_sse.la -lm libtool: link: gcc -shared -fPIC -DPIC .libs/libpll_la-fasta.o .libs/libpll_la-gamma.o .libs/libpll_la-likelihood.o .libs/libpll_la-list.o .libs/libpll_la-maps.o .libs/libpll_la-models.o .libs/libpll_la-pll.o .libs/libpll_la-output.o .libs/libpll_la-utree.o .libs/libpll_la-rtree.o .libs/libpll_la-derivatives.o .libs/libpll_la-partials.o .libs/libpll_la-compress.o .libs/libpll_la-utree_moves.o .libs/libpll_la-utree_svg.o .libs/libpll_la-parsimony.o .libs/libpll_la-core_derivatives.o .libs/libpll_la-core_partials.o .libs/libpll_la-core_pmatrix.o .libs/libpll_la-core_likelihood.o .libs/libpll_la-parse_utree.o .libs/libpll_la-parse_rtree.o .libs/libpll_la-lex_utree.o .libs/libpll_la-lex_rtree.o .libs/libpll_la-fast_parsimony.o .libs/libpll_la-stepwise.o .libs/libpll_la-random.o .libs/libpll_la-phylip.o .libs/libpll_la-hardware.o -Wl,--whole-archive ./.libs/libsimd_avx2.a ./.libs/libsimd_avx.a ./.libs/libsimd_sse.a -Wl,--no-whole-archive -lm -g -O2 -fstack-protector-strong -O3 -g -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libpll.so.0 -o .libs/libpll.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libpll.so.0" && ln -s "libpll.so.0.0.0" "libpll.so.0") libtool: link: (cd ".libs" && rm -f "libpll.so" && ln -s "libpll.so.0.0.0" "libpll.so") @@ -756,7 +792,7 @@ make[3]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' make[4]: Entering directory '/build/reproducible-path/libpll-0.3.2/src' /usr/bin/mkdir -p '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libpll.la '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libpll.la '/build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libpll.so.0.0.0 /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/libpll.so.0.0.0 libtool: install: (cd /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libpll.so.0.0.0 libpll.so.0 || { rm -f libpll.so.0 && ln -s libpll.so.0.0.0 libpll.so.0; }; }) libtool: install: (cd /build/reproducible-path/libpll-0.3.2/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libpll.so.0.0.0 libpll.so || { rm -f libpll.so && ln -s libpll.so.0.0.0 libpll.so; }; }) @@ -885,12 +921,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1870614/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1870614/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3724531 and its subdirectories -I: Current time: Tue Apr 30 02:18:48 -12 2024 -I: pbuilder-time-stamp: 1714486728 +I: removing directory /srv/workspace/pbuilder/1870614 and its subdirectories +I: Current time: Tue Jun 3 10:42:57 +14 2025 +I: pbuilder-time-stamp: 1748896977