Diff of the two buildlogs: -- --- b1/build.log 2024-11-06 18:08:04.828400426 +0000 +++ b2/build.log 2024-11-06 18:23:31.503455884 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Dec 9 12:16:07 -12 2025 -I: pbuilder-time-stamp: 1765325767 +I: Current time: Thu Nov 7 08:08:08 +14 2024 +I: pbuilder-time-stamp: 1730916488 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking libcifpp_7.0.7-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/254715/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1019291/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 6 18:08 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1019291/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1019291/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='dd369727494f412dab09fa11d0491880' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='254715' - PS1='# ' - PS2='> ' + INVOCATION_ID=f95535f5ea0d4c2885cebec723e46209 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1019291 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1DpBAdpo/pbuilderrc_TNBt --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1DpBAdpo/b1 --logfile b1/build.log libcifpp_7.0.7-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1DpBAdpo/pbuilderrc_E5sB --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1DpBAdpo/b2 --logfile b2/build.log libcifpp_7.0.7-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/254715/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1019291/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -341,7 +373,7 @@ Get: 210 http://deb.debian.org/debian trixie/main amd64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 211 http://deb.debian.org/debian trixie/main amd64 python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [29.5 kB] Get: 212 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 167 MB in 13s (13.1 MB/s) +Fetched 167 MB in 8s (20.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) @@ -1039,8 +1071,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Dec 10 00:18:55 UTC 2025. -Universal Time is now: Wed Dec 10 00:18:55 UTC 2025. +Local time is now: Wed Nov 6 18:11:31 UTC 2024. +Universal Time is now: Wed Nov 6 18:11:31 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -1232,7 +1264,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libcifpp-7.0.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libcifpp_7.0.7-3_source.changes +I: user script /srv/workspace/pbuilder/1019291/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1019291/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libcifpp-7.0.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libcifpp_7.0.7-3_source.changes dpkg-buildpackage: info: source package libcifpp dpkg-buildpackage: info: source version 7.0.7-3 dpkg-buildpackage: info: source distribution unstable @@ -1297,8 +1333,8 @@ -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot -- Found Sphinx: /usr/bin/sphinx-build --- Configuring done (52.5s) --- Generating done (0.2s) +-- Configuring done (24.9s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -1315,80 +1351,67 @@ export http_proxy=127.0.0.1:9 export https_proxy=127.0.0.1:9 dh_auto_build - cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libcifpp-7.0.7 -B/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make -f CMakeFiles/cifpp.dir/build.make CMakeFiles/cifpp.dir/depend -make -f docs/CMakeFiles/Doxygen-libcifpp.dir/build.make docs/CMakeFiles/Doxygen-libcifpp.dir/depend -make -f docs/CMakeFiles/Sphinx-libcifpp.dir/build.make docs/CMakeFiles/Sphinx-libcifpp.dir/depend make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +make -f docs/CMakeFiles/Doxygen-libcifpp.dir/build.make docs/CMakeFiles/Doxygen-libcifpp.dir/depend cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/CMakeFiles/cifpp.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +make -f docs/CMakeFiles/Sphinx-libcifpp.dir/build.make docs/CMakeFiles/Sphinx-libcifpp.dir/depend cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/docs /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/CMakeFiles/Doxygen-libcifpp.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/docs /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/CMakeFiles/Sphinx-libcifpp.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make -f CMakeFiles/cifpp.dir/build.make CMakeFiles/cifpp.dir/build +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make -f docs/CMakeFiles/Doxygen-libcifpp.dir/build.make docs/CMakeFiles/Doxygen-libcifpp.dir/build -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make -f docs/CMakeFiles/Sphinx-libcifpp.dir/build.make docs/CMakeFiles/Sphinx-libcifpp.dir/build -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' [ 2%] Building CXX object CMakeFiles/cifpp.dir/src/category.cpp.o [ 4%] Generating xml -[ 6%] Building CXX object CMakeFiles/cifpp.dir/src/datablock.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/category.cpp.o -MF CMakeFiles/cifpp.dir/src/category.cpp.o.d -o CMakeFiles/cifpp.dir/src/category.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/category.cpp cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/xml +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/category.cpp.o -MF CMakeFiles/cifpp.dir/src/category.cpp.o.d -o CMakeFiles/cifpp.dir/src/category.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/category.cpp +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +[ 6%] Building CXX object CMakeFiles/cifpp.dir/src/condition.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/condition.cpp.o -MF CMakeFiles/cifpp.dir/src/condition.cpp.o.d -o CMakeFiles/cifpp.dir/src/condition.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/condition.cpp [ 9%] Building CXX object CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o +[ 11%] Building CXX object CMakeFiles/cifpp.dir/src/datablock.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/datablock.cpp.o -MF CMakeFiles/cifpp.dir/src/datablock.cpp.o.d -o CMakeFiles/cifpp.dir/src/datablock.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/datablock.cpp -[ 11%] Building CXX object CMakeFiles/cifpp.dir/src/condition.cpp.o -[ 13%] Building CXX object CMakeFiles/cifpp.dir/src/file.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/condition.cpp.o -MF CMakeFiles/cifpp.dir/src/condition.cpp.o.d -o CMakeFiles/cifpp.dir/src/condition.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/condition.cpp /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -MF CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o.d -o CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/dictionary_parser.cpp -[ 15%] Generating xml +[ 13%] Generating xml +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/xml +[ 18%] Building CXX object CMakeFiles/cifpp.dir/src/file.cpp.o +[ 18%] Generating docs +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs && /usr/bin/doxygen /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/Doxyfile /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/file.cpp.o -MF CMakeFiles/cifpp.dir/src/file.cpp.o.d -o CMakeFiles/cifpp.dir/src/file.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/file.cpp -[ 18%] Building CXX object CMakeFiles/cifpp.dir/src/parser.cpp.o +[ 20%] Generating docs +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs && /usr/bin/doxygen /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/Doxyfile +[ 22%] Building CXX object CMakeFiles/cifpp.dir/src/parser.cpp.o +[ 25%] Building CXX object CMakeFiles/cifpp.dir/src/item.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/parser.cpp.o -MF 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-I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/text.cpp.o -MF CMakeFiles/cifpp.dir/src/text.cpp.o.d -o CMakeFiles/cifpp.dir/src/text.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/text.cpp -[ 29%] Building CXX object CMakeFiles/cifpp.dir/src/utilities.cpp.o -[ 31%] Building CXX object CMakeFiles/cifpp.dir/src/point.cpp.o +[ 31%] Building CXX object CMakeFiles/cifpp.dir/src/utilities.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. 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Searching for example files... @@ -1445,7 +1468,12 @@ Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/io.hpp... Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/pdb2cif.hpp... Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/pdb2cif.hpp... -Preprocessing /build/reproducible-path/libcifpp-7.0.Doxygen version used: 1.9.8 +Preprocessing /build/reproducible-path/libcifpp-7.0./usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/symmetry.cpp.o -MF CMakeFiles/cifpp.dir/src/symmetry.cpp.o.d -o CMakeFiles/cifpp.dir/src/symmetry.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/symmetry.cpp +[ 45%] Building CXX object CMakeFiles/cifpp.dir/src/model.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/model.cpp.o -MF CMakeFiles/cifpp.dir/src/model.cpp.o.d -o CMakeFiles/cifpp.dir/src/model.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/model.cpp +[ 47%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/cif2pdb.cpp +Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... @@ -1501,7 +1529,9 @@ Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/io.hpp... Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/pdb2cif.hpp... Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/pdb2cif.hpp... -Preprocessing /build/reproducible-path/libcifpp-7.0./build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:173: warning: Compound cif::validation_exception is not documented. +Preprocessing /build/reproducible-path/libcifpp-7.0.[ 50%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/pdb2cif.cpp +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:173: warning: Compound cif::validation_exception is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:173: warning: Compound cif::validation_exception is not documented. 7/include/cif++/pdb/tls.hpp... Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/tls.hpp... @@ -1599,102 +1629,6 @@ Generating code for file cif++/pdb/io.hpp... Generating code for file cif++/pdb/pdb2cif.hpp... Generating code for file cif++/pdb/tls.hpp... -Generating code for file c7/include/cif++/pdb/tls.hpp... -Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/tls.hpp... -Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/point.hpp... -Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/point.hpp... -Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/row.hpp... -Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/row.hpp... -Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/symmetry.hpp... -Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/symmetry.hpp... -Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/text.hpp... -Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/text.hpp... -Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/utilities.hpp... -Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/utilities.hpp... -Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp... -Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp... -Building macro definition list... -Building group list... -Building directory list... -Building namespace list... -Building file list... -Building class list... -Building concept list... -Computing nesting relations for classes... -Associating documentation with classes... -Associating documentation with concepts... -Associating documentation with modules... -Building example list... -Searching for enumerations... -Searching for documented typedefs... -Searching for members imported via using declarations... -Searching for included using directives... -Searching for documented variables... -Building interface member list... -Building member list... -Searching for friends... -Searching for documented defines... -Computing class inheritance relations... -Computing class usage relations... -Flushing cached template relations that have become invalid... -Computing class relations... -Add enum values to enums... -Searching for member function documentation... -Creating members for template instances... -Building page list... -Search for main page... -Computing page relations... -Determining the scope of groups... -Computing module relations... -Sorting lists... -Determining which enums are documented -Computing member relations... -Building full member lists recursively... -Adding members to member groups. -Computing member references... -Inheriting documentation... -Generating disk names... -Adding source references... -Adding xrefitems... -Sorting member lists... -Setting anonymous enum type... -Computing dependencies between directories... -Generating citations page... -Counting members... -Counting data structures... -Resolving user defined references... -Finding anchors and sections in the documentation... -Transferring function references... -Combining using relations... -Adding members to index pages... -Correcting members for VHDL... -Computing tooltip texts... -Generating style sheet... -Generating search indices... -Generating example documentation... -Generating file sources... -Generating code for file cif++.hpp... -Generating code for file cif++/atom_type.hpp... -Generating code for file cif++/category.hpp... -Generating code for file cif++/compound.hpp... -Generating code for file cif++/condition.hpp... -Generating code for file cif++/datablock.hpp... -Generating code for file cif++/dictionary_parser.hpp... -Generating code for file cif++/exports.hpp... -Generating code for file cif++/file.hpp... -Generating code for file cif++/format.hpp... -Generating code for file cif++/forward_decl.hpp... -Generating code for file cif++/gzio.hpp... -Generating code for file cif++/item.hpp... -Generating code for file cif++/iterator.hpp... -Generating code for file cif++/matrix.hpp... -Generating code for file cif++/model.hpp... -Generating code for file cif++/parser.hpp... -Generating code for file cif++/pdb.hpp... -Generating code for file cif++/pdb/cif2pdb.hpp... -Generating code for file cif++/pdb/io.hpp... -Generating code for file cif++/pdb/pdb2cif.hpp... -Generating code for file cif++/pdb/tls.hpp... Generating code for file c/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. @@ -1710,8 +1644,6 @@ /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:287: warning: Member item_alias(const item_alias &)=default (function) of struct cif::item_alias is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:288: warning: Member operator=(const item_alias &)=default (function) of struct cif::item_alias is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented. if++/point.hpp... Generating code for file cif++/row.hpp... @@ -1799,27 +1731,109 @@ Generating docs for compound cif::parser... Generating docs for compound cif::point_type... Generating docs for compound cif::progress_bar... -G/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:153: warning: Member operator=(category rhs) (function) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:176: warning: Member validation_exception(validation_error err) (function) of class cif::validation_exception is not documented. +G/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:176: warning: Member validation_exception(validation_error err) (function) of class cif::validation_exception is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:181: warning: Member validation_exception(validation_error err, std::string_view category) (function) of class cif::validation_exception is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:186: warning: Member validation_exception(validation_error err, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:191: warning: Member validation_exception(std::error_code ec) (function) of class cif::validation_exception is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:193: warning: Member validation_exception(std::error_code ec, std::string_view category) (function) of class cif::validation_exception is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:195: warning: Member validation_exception(std::error_code ec, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:164: warning: Member swap(category &a, category &b) noexcept (friend) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:274: warning: Member is_water(std::string_view res_name) const (function) of class cif::compound_factory is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:292: warning: Member report_missing_compound(std::string_view compound_id) (function) of class cif::compound_factory is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:327: warning: Member compound_source(const cif::file &file) (function) of class cif::compound_source is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/datablock.hpp:77: warning: Member swap_(datablock &a, datablock &b) noexcept (friend) of class cif::datablock is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:287: warning: Member item_alias(const item_alias &)=default (function) of struct cif::item_alias is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:288: warning: Member operator=(const item_alias &)=default (function) of struct cif::item_alias is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented. -enerating docs for compound cif::quaternion_type... +7/include/cif++/pdb/tls.hpp... +Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/tls.hpp... +Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/point.hpp... +Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/point.hpp... +Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/row.hpp... +Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/row.hpp... +Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/symmetry.hpp... +Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/symmetry.hpp... +Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/text.hpp... +Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/text.hpp... +Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/utilities.hpp... +Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/utilities.hpp... +Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp... +Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp... +Building macro definition list... +Building group list... +Building directory list... +Building namespace list... +Building file list... +Building class list... +Building concept list... +Computing nesting relations for classes... +Associating documentation with classes... +Associating documentation with concepts... +Associating documentation with modules... +Building example list... +Searching for enumerations... +Searching for documented typedefs... +Searching for members imported via using declarations... +Searching for included using directives... +Searching for documented variables... +Building interface member list... +Building member list... +Searching for friends... +Searching for documented defines... +Computing class inheritance relations... +Computing class usage relations... +Flushing cached template relations that have become invalid... +Computing class relations... +Add enum values to enums... +Searching for member function documentation... +Creating members for template instances... +Building page list... +Search for main page... +Computing page relations... +Determining the scope of groups... +Computing module relations... +Sorting lists... +Determining which enums are documented +Computing member relations... +Building full member lists recursively... +Adding members to member groups. +Computing member references... +Inheriting documentation... +Generating disk names... +Adding source references... +Adding xrefitems... +Sorting member lists... +Setting anonymous enum type... +Computing dependencies between directories... +Generating citations page... +Counting members... +Counting data structures... +Resolving user defined references... +Finding anchors and sections in the documentation... +Transferring function references... +Combining using relations... +Adding members to index pages... +Correcting members for VHDL... +Computing tooltip texts... +Generating style sheet... +Generating search indices... +Generating example documentation... +Generating file sources... +Generating code for file cif++.hpp... +Generating code for file cif++/atom_type.hpp... +Generating code for file cif++/category.hpp... +Generating code for file cif++/compound.hpp... +Generating code for file cif++/condition.hpp... +Generating code for file cif++/datablock.hpp... +Generating code for file cif++/dictionary_parser.hpp... +Generating code for file cif++/exports.hpp... +Generating code for file cif++/file.hpp... +Generating code for file cif++/format.hpp... +Generating code for file cif++/forward_decl.hpp... +Generating code for file cif++/gzio.hpp... +Generating code for file cif++/item.hpp... +Generating code for file cif++/iterator.hpp... +Generating code for file cif++/matrix.hpp... +Generating code for file cif++/model.hpp... +Generating code for file cif++/parser.hpp... +Generating code for file cif++/pdb.hpp... +Generating code for file cif++/pdb/cif2pdb.hpp... +Generating code for file cif++/pdb/io.hpp... +Generating code for file cif++/pdb/pdb2cif.hpp... +Generating code for file cif++/pdb/tls.hpp... +Generating code for file cenerating docs for compound cif::quaternion_type... Generating docs for compound cif::row... Generating docs for compound cif::row_handle... Generating docs for compound cif::row_initializer... @@ -1898,7 +1912,35 @@ Generating XML output for class cif::item_value Generating XML output for class cif::iterator_impl Generating XML output for class cif::iterator_impl< Category > -Generating XML output for class cif::iterator_impl< Caif++/point.hpp... +Generating XML output for class cif::iterator_impl< Ca/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:153: warning: Member operator=(category rhs) (function) of class cif::category is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:164: warning: Member swap(category &a, category &b) noexcept (friend) of class cif::category is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:274: warning: Member is_water(std::string_view res_name) const (function) of class cif::compound_factory is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:292: warning: Member report_missing_compound(std::string_view compound_id) (function) of class cif::compound_factory is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:327: warning: Member compound_source(const cif::file &file) (function) of class cif::compound_source is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/datablock.hpp:77: warning: Member swap_(datablock &a, datablock &b) noexcept (friend) of class cif::datablock is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:287: warning: Member item_alias(const item_alias &)=default (function) of struct cif::item_alias is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:288: warning: Member operator=(const item_alias &)=default (function) of struct cif::item_alias is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented. +if++/point.hpp... Generating code for file cif++/row.hpp... Generating code for file cif++/symmetry.hpp... Generating code for file cif++/text.hpp... @@ -1990,109 +2032,6 @@ /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:191: warning: Member validation_exception(std::error_code ec) (function) of class cif::validation_exception is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:193: warning: Member validation_exception(std::error_code ec, std::string_view category) (function) of class cif::validation_exception is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:195: warning: Member validation_exception(std::error_code ec, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented: - parameter 'pdbx_file' -enerating docs for compound cif::quaternion_type... -Generating docs for compound cif::row... -Generating docs for compound cif::row_handle... -Generating docs for compound cif::row_initializer... -Generating docs for compound cif::sac_parser... -Generating docs for compound cif::space_group... -Generating docs for compound cif::spacegroup... -Generating docs for compound cif::spherical_dots... -Generating docs for compound cif::sym_op... -Generating docs for compound cif::symmetric_matrix... -Generating docs for compound cif::symmetric_matrix_fixed... -Generating docs for compound cif::symop_data... -Generating docs for compound cif::symop_datablock... -Generating docs for compound cif::transformation... -Generating docs for compound cif::type_validator... -Generating docs for compound cif::validation_category_impl... -Generating docs for compound cif::validation_exception... -Generating docs for compound cif::validator... -Generating docs for compound cif::validator_factory... -Generating docs for concept cif::Numeric... -Generating docs for compound cif::colour::detail::coloured_string_t... -Generating docs for compound cif::gzio::basic_ifstream... -Generating docs for compound cif::gzio::basic_igzip_streambuf... -Generating docs for compound cif::gzio::basic_istream... -Generating docs for compound cif::gzio::basic_ofstream... -Generating docs for compound cif::gzio::basic_ogzip_streambuf... -Generating docs for compound cif::gzio::basic_ostream... -Generating docs for compound cif::gzio::basic_streambuf... -Generating docs for compound cif::mm::atom... -Generating docs for compound cif::mm::branch... -Generating docs for compound cif::mm::monomer... -Generating docs for compound cif::mm::polymer... -Generating docs for compound cif::mm::residue... -Generating docs for compound cif::mm::structure... -Generating docs for compound cif::mm::sugar... -Generating graph info page... -Generating directory documentation... -Generating dependency graph for directory cif++/pdb -finalizing index lists... -writing tag file... -Generating XML output... -Generating XML output for class cif::mm::atom -Generating XML output for class cif::atom_type_info -Generating XML output for class cif::atom_type_traits -Generating XML output for class cif::gzio::basic_ifstream -Generating XML output for class cif::gzio::basic_igzip_streambuf -Generating XML output for class cif::gzio::basic_istream -Generating XML output for class cif::gzio::basic_ofstream -Generating XML output for class cif::gzio::basic_ogzip_streambuf -Generating XML output for class cif::gzio::basic_ostream -Generating XML output for class cif::gzio::basic_streambuf -Generating XML output for class cif::mm::branch -Generating XML output for class cif::category -Generating XML output for class cif::category_validator -Generating XML output for class cif::cell -Generating XML output for class cif::colour::detail::coloured_string_t -Generating XML output for class cif::compound -Generating XML output for class cif::compound_atom -Generating XML output for class cif::compound_bond -Generating XML output for class cif::compound_factory -Generating XML output for class cif::compound_source -Generating XML output for class cif::condition -Generating XML output for class cif::conditional_iterator_proxy -Generating XML output for class cif::crystal -Generating XML output for class cif::datablock -Generating XML output for class cif::duplicate_key_error -Generating XML output for class cif::empty_type -Generating XML output for class cif::file -Generating XML output for class cif::fill_out_streambuf -Generating XML output for class cif::identity_matrix -Generating XML output for class cif::iless -Generating XML output for class cif::item -Generating XML output for class cif::item_alias -Generating XML output for class cif::category::item_entry -Generating XML output for class cif::item_handle -Generating XML output for class cif::item_validator -Generating XML output for class cif::item_value -Generating XML output for class cif::iterator_impl -Generating XML output for class cif::iterator_impl< Category > -Generating XML output for class cif::iterator_impl< Ca/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented: - parameter 'pdbx_file' tegory, T > Generating XML output for class cif::iterator_proxy Generating XML output for class cif::key @@ -2185,8 +2124,101 @@ type lookup cache used 4688/65536 hits=49233 misses=4934 symbol lookup cache used 5033/65536 hits=61776 misses=5033 finished... -[ 59%] Generating documentation with Sphinx -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs && /usr/bin/sphinx-build -b html -Dbreathe_projects.libcifpp=/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/xml /build/reproducible-path/libcifpp-7.0.7/docs /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/sphinx +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +enerating docs for compound cif::quaternion_type... +Generating docs for compound cif::row... +Generating docs for compound cif::row_handle... +Generating docs for compound cif::row_initializer... +Generating docs for compound cif::sac_parser... +Generating docs for compound cif::space_group... +Generating docs for compound cif::spacegroup... +Generating docs for compound cif::spherical_dots... +Generating docs for compound cif::sym_op... +Generating docs for compound cif::symmetric_matrix... +Generating docs for compound cif::symmetric_matrix_fixed... +Generating docs for compound cif::symop_data... +Generating docs for compound cif::symop_datablock... +Generating docs for compound cif::transformation... +Generating docs for compound cif::type_validator... +Generating docs for compound cif::validation_category_impl... +Generating docs for compound cif::validation_exception... +Generating docs for compound cif::validator... +Generating docs for compound cif::validator_factory... +Generating docs for concept cif::Numeric... +Generating docs for compound cif::colour::detail::coloured_string_t... +Generating docs for compound cif::gzio::basic_ifstream... +Generating docs for compound cif::gzio::basic_igzip_streambuf... +Generating docs for compound cif::gzio::basic_istream... +Generating docs for compound cif::gzio::basic_ofstream... +Generating docs for compound cif::gzio::basic_ogzip_streambuf... +Generating docs for compound cif::gzio::basic_ostream... +Generating docs for compound cif::gzio::basic_streambuf... +Generating docs for compound cif::mm::atom... +Generating docs for compound cif::mm::branch... +Generating docs for compound cif::mm::monomer... +Generating docs for compound cif::mm::polymer... +Generating docs for compound cif::mm::residue... +Generating docs for compound cif::mm::structure... +Generating docs for compound cif::mm::sugar... +Generating graph info page... +Generating directory documentation... +Generating dependency graph for directory cif++/pdb +finalizing index lists... +writing tag file... +Generating XML output... +Generating XML output for class cif::mm::atom +Generating XML output for class cif::atom_type_info +Generating XML output for class cif::atom_type_traits +Generating XML output for class cif::gzio::basic_ifstream +Generating XML output for class cif::gzio::basic_igzip_streambuf +Generating XML output for class cif::gzio::basic_istream +Generating XML output for class cif::gzio::basic_ofstream +Generating XML output for class cif::gzio::basic_ogzip_streambuf +Generating XML output for class cif::gzio::basic_ostream +Generating XML output for class cif::gzio::basic_streambuf +Generating XML output for class cif::mm::branch +Generating XML output for class cif::category +Generating XML output for class cif::category_validator +Generating XML output for class cif::cell +Generating XML output for class cif::colour::detail::coloured_string_t +Generating XML output for class cif::compound +Generating XML output for class cif::compound_atom +Generating XML output for class cif::compound_bond +Generating XML output for class cif::compound_factory +Generating XML output for class cif::compound_source +Generating XML output for class cif::condition +Generating XML output for class cif::conditional_iterator_proxy +Generating XML output for class cif::crystal +Generating XML output for class cif::datablock +Generating XML output for class cif::duplicate_key_error +Generating XML output for class cif::empty_type +Generating XML output for class cif::file +Generating XML output for class cif::fill_out_streambuf +Generating XML output for class cif::identity_matrix +Generating XML output for class cif::iless +Generating XML output for class cif::item +Generating XML output for class cif::item_alias +Generating XML output for class cif::category::item_entry +Generating XML output for class cif::item_handle +Generating XML output for class cif::item_validator +Generating XML output for class cif::item_value +Generating XML output for class cif::iterator_impl +Generating XML output for class cif::iterator_impl< Category > +Generating XML output for class cif::iterator_impl< Ca[ 50%] Built target Doxygen-libcifpp +[ 52%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/pdb2cif_remark_3.cpp +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented: + parameter 'pdbx_file' tegory, T > Generating XML output for class cif::iterator_proxy Generating XML output for class cif::key @@ -2279,18 +2311,22 @@ type lookup cache used 4688/65536 hits=49233 misses=4934 symbol lookup cache used 5033/65536 hits=61776 misses=5033 finished... -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -[ 59%] Built target Doxygen-libcifpp +[ 54%] Generating documentation with Sphinx +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs && /usr/bin/sphinx-build -b html -Dbreathe_projects.libcifpp=/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/xml /build/reproducible-path/libcifpp-7.0.7/docs /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/docs/sphinx Running Sphinx v7.4.7 loading translations [en]... done /usr/lib/python3/dist-packages/breathe/project.py:116: RemovedInSphinx80Warning: Sphinx 8 will drop support for representing paths as strings. Use "pathlib.Path" or "os.fspath" instead. self._default_build_dir = os.path.dirname(app.doctreedir.rstrip(os.sep)) making output directory... done +[ 56%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/reconstruct.cpp +[ 59%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/validate-pdbx.cpp (!) Unabridged API: unexpected kind 'concept' (IGNORED) [~] Exhale: parsing Doxygen XML. -[+] Exhale: finished parsing Doxygen XML in 20.11 seconds. +[+] Exhale: finished parsing Doxygen XML in 15.91 seconds. [~] Exhale: generating reStructuredText documents. -[+] Exhale: generated reStructuredText documents in 23.3 seconds. +[+] Exhale: generated reStructuredText documents in 8.65 seconds. myst v4.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'colon_fence'}, disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_sort=True, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... @@ -2309,6 +2345,15 @@ reading sources... [ 3%] api/classcif_1_1duplicate__key__error reading sources... [ 4%] api/classcif_1_1file reading sources... [ 4%] api/classcif_1_1fill__out__streambuf +reading sources... [ 4%] api/classcif_1_1gzio_1_1basic__ifstream +reading sources... [ 5%] api/classcif_1_1gzio_1_1basic__igzip__streambuf +reading sources... [ 5%] api/classcif_1_1gzio_1_1basic__istream +reading sources... [ 5%] api/classcif_1_1gzio_1_1basic__ofstream +reading sources... [ 5%] api/classcif_1_1gzio_1_1basic__ogzip__streambuf +reading sources... [ 6%] api/classcif_1_1gzio_1_1basic__ostream +reading sources... [ 6%] api/classcif_1_1gzio_1_1basic__streambuf +reading sources... [ 6%] api/classcif_1_1identity__matrix +reading sources... [ 7%] api/classcif_1_1item In file included from /usr/include/c++/14/string:42, from /usr/include/c++/14/stdexcept:39, from /usr/include/c++/14/system_error:43, @@ -2328,15 +2373,6 @@ /build/reproducible-path/libcifpp-7.0.7/src/pdb/reconstruct.cpp:780:30: note: ‘letter_can’ was declared here 780 | char letter_can; | ^~~~~~~~~~ -reading sources... [ 4%] api/classcif_1_1gzio_1_1basic__ifstream -reading sources... [ 5%] api/classcif_1_1gzio_1_1basic__igzip__streambuf -reading sources... [ 5%] api/classcif_1_1gzio_1_1basic__istream -reading sources... [ 5%] api/classcif_1_1gzio_1_1basic__ofstream -reading sources... [ 5%] api/classcif_1_1gzio_1_1basic__ogzip__streambuf -reading sources... [ 6%] api/classcif_1_1gzio_1_1basic__ostream -reading sources... [ 6%] api/classcif_1_1gzio_1_1basic__streambuf -reading sources... [ 6%] api/classcif_1_1identity__matrix -reading sources... [ 7%] api/classcif_1_1item reading sources... [ 7%] api/classcif_1_1iterator__impl reading sources... [ 7%] api/classcif_1_1iterator__impl_3_01Category_00_01T_01_4 reading sources... [ 8%] api/classcif_1_1iterator__impl_3_01Category_01_4 @@ -2420,33 +2456,6 @@ reading sources... [ 31%] api/file_cif++_point.hpp reading sources... [ 31%] api/file_cif++_row.hpp reading sources... [ 32%] api/file_cif++_symmetry.hpp -reading sources... [ 32%] api/file_cif++_text.hpp -reading sources... [ 32%] api/file_cif++_utilities.hpp -reading sources... [ 33%] api/file_cif++_validate.hpp -reading sources... [ 33%] api/function_condition_8hpp_1ae3fb5e492867225091edeba773f91d39 -reading sources... [ 33%] api/function_model_8hpp_1a9bb5822efb054c2979a666d9bfc0913d -reading sources... [ 33%] api/function_model_8hpp_1aa8d7a4613d7166fe2e43c36894cbd1e7 -reading sources... [ 34%] api/function_model_8hpp_1aaaea875b497445410924763ba322f0f4 -reading sources... [ 34%] api/function_model_8hpp_1ab82fb33002132ca78f0f0de0855a9883 -reading sources... [ 34%] api/function_namespacecif_1a016b23e15d2a1d5f8121a697d7bec68e -reading sources... [ 35%] api/function_namespacecif_1a02741e5ba23265cacfda366089d13f00 -reading sources... [ 35%] api/function_namespacecif_1a04692e2c6a26c3dd823891c93aa68c46 -reading sources... [ 35%] api/function_namespacecif_1a07568e2424a8b9f3d87c0e7b506f01c8 -reading sources... [ 36%] api/function_namespacecif_1a0987fe676d4bf9554de808bfe9b13a6b -reading sources... [ 36%] api/function_namespacecif_1a0cf4d792e3cf8fb29aa18b8c585b1426 -reading sources... [ 36%] api/function_namespacecif_1a0e173ffb184bab07d483866b6f2f7274 -reading sources... [ 36%] api/function_namespacecif_1a0f6dd8dc18df398b116c0c2343c2cfee -reading sources... [ 37%] api/function_namespacecif_1a1020ee51b50043210b5e9c8eaecd4c28 -reading sources... [ 37%] api/function_namespacecif_1a10ff1c475902516ebcd1cf4059ac513b -reading sources... [ 37%] api/function_namespacecif_1a1425b605f99bf04eeb638f55c0d91566 -reading sources... [ 38%] api/function_namespacecif_1a15ce5665ae421c0a3db9fac68c149836 -reading sources... [ 38%] api/function_namespacecif_1a17188febf04153361cad42eb042da64a -reading sources... [ 38%] api/function_namespacecif_1a18461202bb0b0d4d134bc3eb46455776 -reading sources... [ 39%] api/function_namespacecif_1a1bf743b12f5bba28eab81d100fa6be6f -reading sources... [ 39%] api/function_namespacecif_1a1cb6fb0735b49d0e7796d223763718e4 -reading sources... [ 39%] api/function_namespacecif_1a2190ac2315339dabb5be80f2a8634e29 -reading sources... [ 39%] api/function_namespacecif_1a26cac7b3c044dff1bdcac52425e775f9 -reading sources... [ 40%] api/function_namespacecif_1a27048ca516d6ab9d61b330b3ae27b37f In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/Eigenvalues:11, from /build/reproducible-path/libcifpp-7.0.7/src/symmetry.cpp:35: @@ -2475,6 +2484,33 @@ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const float*’ to ‘static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]’ declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +reading sources... [ 32%] api/file_cif++_text.hpp +reading sources... [ 32%] api/file_cif++_utilities.hpp +reading sources... [ 33%] api/file_cif++_validate.hpp +reading sources... [ 33%] api/function_condition_8hpp_1ae3fb5e492867225091edeba773f91d39 +reading sources... [ 33%] api/function_model_8hpp_1a9bb5822efb054c2979a666d9bfc0913d +reading sources... [ 33%] api/function_model_8hpp_1aa8d7a4613d7166fe2e43c36894cbd1e7 +reading sources... [ 34%] api/function_model_8hpp_1aaaea875b497445410924763ba322f0f4 +reading sources... [ 34%] api/function_model_8hpp_1ab82fb33002132ca78f0f0de0855a9883 +reading sources... [ 34%] api/function_namespacecif_1a016b23e15d2a1d5f8121a697d7bec68e +reading sources... [ 35%] api/function_namespacecif_1a02741e5ba23265cacfda366089d13f00 +reading sources... [ 35%] api/function_namespacecif_1a04692e2c6a26c3dd823891c93aa68c46 +reading sources... [ 35%] api/function_namespacecif_1a07568e2424a8b9f3d87c0e7b506f01c8 +reading sources... [ 36%] api/function_namespacecif_1a0987fe676d4bf9554de808bfe9b13a6b +reading sources... [ 36%] api/function_namespacecif_1a0cf4d792e3cf8fb29aa18b8c585b1426 +reading sources... [ 36%] api/function_namespacecif_1a0e173ffb184bab07d483866b6f2f7274 +reading sources... [ 36%] api/function_namespacecif_1a0f6dd8dc18df398b116c0c2343c2cfee +reading sources... [ 37%] api/function_namespacecif_1a1020ee51b50043210b5e9c8eaecd4c28 +reading sources... [ 37%] api/function_namespacecif_1a10ff1c475902516ebcd1cf4059ac513b +reading sources... [ 37%] api/function_namespacecif_1a1425b605f99bf04eeb638f55c0d91566 +reading sources... [ 38%] api/function_namespacecif_1a15ce5665ae421c0a3db9fac68c149836 +reading sources... [ 38%] api/function_namespacecif_1a17188febf04153361cad42eb042da64a +reading sources... [ 38%] api/function_namespacecif_1a18461202bb0b0d4d134bc3eb46455776 +reading sources... [ 39%] api/function_namespacecif_1a1bf743b12f5bba28eab81d100fa6be6f +reading sources... [ 39%] api/function_namespacecif_1a1cb6fb0735b49d0e7796d223763718e4 +reading sources... [ 39%] api/function_namespacecif_1a2190ac2315339dabb5be80f2a8634e29 +reading sources... [ 39%] api/function_namespacecif_1a26cac7b3c044dff1bdcac52425e775f9 +reading sources... [ 40%] api/function_namespacecif_1a27048ca516d6ab9d61b330b3ae27b37f reading sources... [ 40%] api/function_namespacecif_1a277d04e4939dd9a5167dc90c21c00266 reading sources... [ 40%] api/function_namespacecif_1a28d3d6db55465d265cb5b6a7a7d93a6b reading sources... [ 41%] api/function_namespacecif_1a2996a300e6f91f05abb11706b3c3cef2 @@ -2970,6 +3006,9 @@ writing output... [ 65%] api/function_namespacecif_1ae8f1330ded658c851bda5859f2e071bc writing output... [ 65%] api/function_namespacecif_1aeb2069c34c7d86acc4418d3740adf5d8 writing output... [ 66%] api/function_namespacecif_1aef6733cba9b16b7930e84b8f578da630 +[ 61%] Linking CXX shared library libcifpp.so +/usr/bin/cmake -E cmake_link_script CMakeFiles/cifpp.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libcifpp.so.7.0 -o libcifpp.so.7.0.7 CMakeFiles/cifpp.dir/src/category.cpp.o CMakeFiles/cifpp.dir/src/condition.cpp.o CMakeFiles/cifpp.dir/src/datablock.cpp.o CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o CMakeFiles/cifpp.dir/src/file.cpp.o CMakeFiles/cifpp.dir/src/item.cpp.o CMakeFiles/cifpp.dir/src/parser.cpp.o CMakeFiles/cifpp.dir/src/row.cpp.o CMakeFiles/cifpp.dir/src/validate.cpp.o CMakeFiles/cifpp.dir/src/text.cpp.o CMakeFiles/cifpp.dir/src/utilities.cpp.o CMakeFiles/cifpp.dir/src/atom_type.cpp.o CMakeFiles/cifpp.dir/src/compound.cpp.o CMakeFiles/cifpp.dir/src/point.cpp.o CMakeFiles/cifpp.dir/src/symmetry.cpp.o CMakeFiles/cifpp.dir/src/model.cpp.o CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o "CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o" /usr/lib/x86_64-linux-gnu/libz.so writing output... [ 66%] api/function_namespacecif_1af443771f125de0bdc78726a4235fc1a3 writing output... [ 66%] api/function_namespacecif_1af6e09fd9a34540b7718e7f76a0029629 writing output... [ 67%] api/function_namespacecif_1afdee9d0ba328b6dc1219e83b128b003b @@ -2987,9 +3026,20 @@ writing output... [ 70%] api/function_pdb_8hpp_1aa4bb7030a077b462d75b328a2d6ef70d writing output... [ 70%] api/function_pdb_8hpp_1aa57fd6d1c296ee70c9784fc59382d7c1 writing output... [ 71%] api/function_pdb_8hpp_1abb1c2c8e2e8be5293619bbb7cd8f316b +/usr/bin/cmake -E cmake_symlink_library libcifpp.so.7.0.7 libcifpp.so.7.0 libcifpp.so writing output... [ 71%] api/function_pdb_8hpp_1ac681cb3a6237bc71dcba0e88fb1c0832 +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' writing output... [ 71%] api/function_symmetry_8hpp_1a5a53cac9d72c839c804fd7619f764d67 +[ 61%] Built target cifpp writing output... [ 72%] api/library_root +make -f test/CMakeFiles/test-main.dir/build.make test/CMakeFiles/test-main.dir/depend +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/test-main.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +make -f test/CMakeFiles/test-main.dir/build.make test/CMakeFiles/test-main.dir/build +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +[ 63%] Building CXX object test/CMakeFiles/test-main.dir/test-main.cpp.o +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/test-main.dir/test-main.cpp.o -MF CMakeFiles/test-main.dir/test-main.cpp.o.d -o CMakeFiles/test-main.dir/test-main.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/test-main.cpp writing output... [ 72%] api/namespace_cif writing output... [ 72%] api/namespace_cif__colour writing output... [ 73%] api/namespace_cif__colour__detail @@ -3059,6 +3109,72 @@ writing output... [ 92%] api/typedef_namespacecif_1a74bfe90596358d194adfab0eb0054b79 writing output... [ 92%] api/typedef_namespacecif_1a88b677fc53a3f1e8e0f15cdb6dc52cb7 writing output... 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'/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +make -f test/CMakeFiles/rename-compound-test.dir/build.make test/CMakeFiles/rename-compound-test.dir/build +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +make -f test/CMakeFiles/sugar-test.dir/build.make test/CMakeFiles/sugar-test.dir/build +[ 65%] Building CXX object test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -MF CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o.d -o CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/unit-3d-test.cpp +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/validate-pdbx-test.dir/DependInfo.cmake "--color=" +[ 70%] Building CXX object test/CMakeFiles/format-test.dir/format-test.cpp.o +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/format-test.dir/format-test.cpp.o -MF CMakeFiles/format-test.dir/format-test.cpp.o.d -o CMakeFiles/format-test.dir/format-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/format-test.cpp +[ 72%] Building CXX object test/CMakeFiles/model-test.dir/model-test.cpp.o +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/model-test.dir/model-test.cpp.o -MF CMakeFiles/model-test.dir/model-test.cpp.o.d -o CMakeFiles/model-test.dir/model-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/model-test.cpp +[ 75%] Building CXX object test/CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o -MF CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o.d -o CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/rename-compound-test.cpp +[ 77%] Building CXX object test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o -MF CMakeFiles/spinner-test.dir/spinner-test.cpp.o.d -o CMakeFiles/spinner-test.dir/spinner-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/spinner-test.cpp +[ 79%] Building CXX object test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o -MF CMakeFiles/sugar-test.dir/sugar-test.cpp.o.d -o CMakeFiles/sugar-test.dir/sugar-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/sugar-test.cpp +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/build +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +[ 81%] Building CXX object test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o -MF CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o.d -o CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/validate-pdbx-test.cpp writing output... [ 93%] api/typedef_namespacecif_1aaca06426423d3d411d330b53965e1b2d writing output... [ 93%] api/typedef_namespacecif_1ab059fcaf3572f71d81e93484789bc0e0 writing output... [ 93%] api/typedef_namespacecif_1ae5965db5577f7f70118a5d976232d966 @@ -3103,112 +3219,32 @@ build succeeded, 40 warnings. The HTML pages are in sphinx. -[ 61%] Linking CXX shared library libcifpp.so -/usr/bin/cmake -E cmake_link_script CMakeFiles/cifpp.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libcifpp.so.7.0 -o libcifpp.so.7.0.7 CMakeFiles/cifpp.dir/src/category.cpp.o CMakeFiles/cifpp.dir/src/condition.cpp.o CMakeFiles/cifpp.dir/src/datablock.cpp.o CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o CMakeFiles/cifpp.dir/src/file.cpp.o CMakeFiles/cifpp.dir/src/item.cpp.o CMakeFiles/cifpp.dir/src/parser.cpp.o CMakeFiles/cifpp.dir/src/row.cpp.o CMakeFiles/cifpp.dir/src/validate.cpp.o CMakeFiles/cifpp.dir/src/text.cpp.o CMakeFiles/cifpp.dir/src/utilities.cpp.o CMakeFiles/cifpp.dir/src/atom_type.cpp.o CMakeFiles/cifpp.dir/src/compound.cpp.o CMakeFiles/cifpp.dir/src/point.cpp.o CMakeFiles/cifpp.dir/src/symmetry.cpp.o CMakeFiles/cifpp.dir/src/model.cpp.o CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o "CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o" /usr/lib/x86_64-linux-gnu/libz.so -/usr/bin/cmake -E cmake_symlink_library libcifpp.so.7.0.7 libcifpp.so.7.0 libcifpp.so -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -[ 61%] Built target cifpp -make -f test/CMakeFiles/test-main.dir/build.make test/CMakeFiles/test-main.dir/depend -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/test-main.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make -f test/CMakeFiles/test-main.dir/build.make test/CMakeFiles/test-main.dir/build -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -[ 63%] Building CXX object test/CMakeFiles/test-main.dir/test-main.cpp.o -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/test-main.dir/test-main.cpp.o -MF CMakeFiles/test-main.dir/test-main.cpp.o.d -o CMakeFiles/test-main.dir/test-main.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/test-main.cpp -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -[ 63%] Built target Sphinx-libcifpp -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -[ 63%] Built target test-main -make -f test/CMakeFiles/unit-v2-test.dir/build.make test/CMakeFiles/unit-v2-test.dir/depend -make -f test/CMakeFiles/unit-3d-test.dir/build.make test/CMakeFiles/unit-3d-test.dir/depend -make -f test/CMakeFiles/format-test.dir/build.make test/CMakeFiles/format-test.dir/depend -make -f test/CMakeFiles/model-test.dir/build.make test/CMakeFiles/model-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make -f test/CMakeFiles/rename-compound-test.dir/build.make test/CMakeFiles/rename-compound-test.dir/depend -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/unit-v2-test.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/format-test.dir/DependInfo.cmake "--color=" -make -f test/CMakeFiles/sugar-test.dir/build.make test/CMakeFiles/sugar-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/unit-3d-test.dir/DependInfo.cmake "--color=" -make -f test/CMakeFiles/spinner-test.dir/build.make test/CMakeFiles/spinner-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/model-test.dir/DependInfo.cmake "--color=" -make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/depend -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/sugar-test.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/rename-compound-test.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/spinner-test.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/CMakeFiles/validate-pdbx-test.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make -f test/CMakeFiles/unit-3d-test.dir/build.make test/CMakeFiles/unit-3d-test.dir/build -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make -f test/CMakeFiles/rename-compound-test.dir/build.make test/CMakeFiles/rename-compound-test.dir/build -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make -f test/CMakeFiles/format-test.dir/build.make test/CMakeFiles/format-test.dir/build -make -f test/CMakeFiles/spinner-test.dir/build.make test/CMakeFiles/spinner-test.dir/build -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -make[4]: Entering directory 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-ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/format-test.dir/format-test.cpp.o -MF CMakeFiles/format-test.dir/format-test.cpp.o.d -o CMakeFiles/format-test.dir/format-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/format-test.cpp -[ 75%] Building CXX object test/CMakeFiles/unit-v2-test.dir/unit-v2-test.cpp.o -[ 77%] Building CXX object test/CMakeFiles/model-test.dir/model-test.cpp.o -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong 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CMakeFiles/model-test.dir/model-test.cpp.o.d -o CMakeFiles/model-test.dir/model-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/model-test.cpp -[ 79%] Building CXX object test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o -[ 81%] Building CXX object test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o -MF CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o.d -o CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/validate-pdbx-test.cpp -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o -MF CMakeFiles/sugar-test.dir/sugar-test.cpp.o.d -o CMakeFiles/sugar-test.dir/sugar-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/sugar-test.cpp [ 84%] Linking CXX executable spinner-test cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/spinner-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/spinner-test.dir/spinner-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o spinner-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' [ 84%] Built target spinner-test -[ 86%] Linking CXX executable format-test +[ 86%] Linking CXX executable rename-compound-test +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/rename-compound-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o rename-compound-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +[ 86%] Built target rename-compound-test +[ 88%] Linking CXX executable format-test cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/format-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/format-test.dir/format-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o format-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -[ 86%] Built target format-test -[ 88%] Linking CXX executable rename-compound-test -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/rename-compound-test.dir/link.txt --verbose=1 +[ 88%] Built target format-test [ 90%] Linking CXX executable sugar-test cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/sugar-test.dir/link.txt --verbose=1 -[ 93%] Linking CXX executable validate-pdbx-test -cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/validate-pdbx-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o rename-compound-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/sugar-test.dir/sugar-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o sugar-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o validate-pdbx-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -[ 93%] Built target rename-compound-test +[ 90%] Built target Sphinx-libcifpp make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' +[ 90%] Built target sugar-test +[ 93%] Linking CXX executable validate-pdbx-test +cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/validate-pdbx-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o validate-pdbx-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' -[ 93%] Built target sugar-test [ 93%] Built target validate-pdbx-test [ 95%] Linking CXX executable model-test cd /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/model-test.dir/link.txt --verbose=1 @@ -3258,10 +3294,10 @@ make[2]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7' dh_auto_test - cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 + cd obj-x86_64-linux-gnu && make -j20 test ARGS\+=--verbose ARGS\+=-j20 make[1]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j42 +/usr/bin/ctest --force-new-ctest-process --verbose -j20 UpdateCTestConfiguration from :/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/DartConfiguration.tcl @@ -3321,7 +3357,7 @@ 8: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test/validate-pdbx-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" 8: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu/test 8: Test timeout computed to be: 1500 -3: Randomness seeded to: 74244341 +3: Randomness seeded to: 249416833 3: Hello, world! 3: Hello, world! 3: Hello, world! @@ -3332,23 +3368,69 @@ 3: =============================================================================== 3: All tests passed (2 assertions in 2 test cases) 3: -1/8 Test #3: format-test ...................... Passed 0.06 sec -5: Randomness seeded to: 2603620 +1/8 Test #3: format-test ...................... Passed 0.14 sec +5: Randomness seeded to: 4213832266 5: inconsistent mandatory value for _diffrn_refln.standard_code in dictionary 5: choosing N -1: Randomness seeded to: 1028553871 +1: Randomness seeded to: 2063740405 1: warning: no child to parent links were found for child cat_1 and parent cat_3 1: Error parsing mmCIF: This file does not seem to be an mmCIF file -5: inconsistent mandatory value for _diffrn_refln.frame_id in dictionary -5: choosing N -4: Randomness seeded to: 1477808020 +4: Randomness seeded to: 1316539095 4: Warning: no atoms loaded 4: Warning: no atoms loaded -8: Randomness seeded to: 380896267 +5: inconsistent mandatory value for _diffrn_refln.frame_id in dictionary +5: choosing N +1: Adding mandatory item conn_type_id to category struct_conn +1: Adding mandatory item ptnr1_label_asym_id to category struct_conn +1: Adding mandatory item ptnr1_label_comp_id to category struct_conn +1: Adding mandatory item ptnr1_label_seq_id to category struct_conn +1: Adding mandatory item ptnr2_label_asym_id to category struct_conn +1: Adding mandatory item ptnr2_label_comp_id to category struct_conn +1: Adding mandatory item ptnr2_label_seq_id to category struct_conn +1: The asym ID's of ndb_poly_seq_scheme and pdbx_poly_seq_scheme are not equal, dropping ndb_poly_seq_scheme +1: +1: Configuration error: +1: +1: The attempt to retrieve compound information for "&&&" failed. +1: +1: This information is searched for in a CCD file called components.cif or +1: components.cif.gz which should be located in one of the following directories: +1: +1: +1: (Note that you can add a directory to the search paths by setting the +1: LIBCIFPP_DATA_DIR environmental variable) +1: +1: On Linux an optional cron script might have been installed that automatically updates +1: components.cif and mmCIF dictionary files. This script only works when the file +1: libcifpp.conf contains an uncommented line with the text: +1: +1: update=true +1: +1: If you do not have a working cron script, you can manually update the files +1: in /var/cache/libcifpp using the following commands: +1: +1: curl -o /var/cache/libcifpp/components.cif https://files.wwpdb.org/pub/pdb/data/monomers/components.cif +1: curl -o /var/cache/libcifpp/mmcif_pdbx.dic https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic +1: curl -o /var/cache/libcifpp/mmcif_ma.dic https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic +1: +1: The current order of compound factory objects is: +1: +1: CCD components file: "/build/reproducible-path/libcifpp-7.0.7/test/REA_v2.cif" +1: CCD components file: "/build/reproducible-path/libcifpp-7.0.7/test/HEM.cif" +1: CCD components.cif resource +1: +1: The following named resources were loaded: +1: components.cif -> "/build/reproducible-path/libcifpp-7.0.7/test/../rsrc/ccd-subset.cif" +1: mmcif_pdbx.dic -> "/build/reproducible-path/libcifpp-7.0.7/test/../rsrc/mmcif_pdbx.dic" +8: Randomness seeded to: 1430295403 8: =============================================================================== 8: All tests passed (15 assertions in 1 test case) 8: -2/8 Test #8: validate-pdbx-test ............... Passed 0.31 sec +2/8 Test #8: validate-pdbx-test ............... Passed 1.03 sec +4: =============================================================================== +4: All tests passed (8500 assertions in 6 test cases) +4: +3/8 Test #4: model-test ....................... Passed 1.14 sec 5: Creating component index ... done 5: Loading component RXA... done 5: Will not rename in child category since there are already rows that link to the parent @@ -4207,48 +4289,6 @@ 5: ATOM 18 C C . PHE A 1 3 ? 22.152 18.987 40.140 1.00 12.43 ? 3 PHE A C 1 5: ATOM 19 O O . PHE A 1 3 ? 22.796 19.289 39.136 1.00 12.12 ? 3 PHE A O 1 5: ATOM 20 C CB . PHE A 1 3 ? 19.970 18.262 39.188 1.00 10.74 ? 3 PHE A CB 1 -1: Adding mandatory item conn_type_id to category struct_conn -1: Adding mandatory item ptnr1_label_asym_id to category struct_conn -1: Adding mandatory item ptnr1_label_comp_id to category struct_conn -1: Adding mandatory item ptnr1_label_seq_id to category struct_conn -1: Adding mandatory item ptnr2_label_asym_id to category struct_conn -1: Adding mandatory item ptnr2_label_comp_id to category struct_conn -1: Adding mandatory item ptnr2_label_seq_id to category struct_conn -1: The asym ID's of ndb_poly_seq_scheme and pdbx_poly_seq_scheme are not equal, dropping ndb_poly_seq_scheme -1: -1: Configuration error: -1: -1: The attempt to retrieve compound information for "&&&" failed. -1: -1: This information is searched for in a CCD file called components.cif or -1: components.cif.gz which should be located in one of the following directories: -1: -1: -1: (Note that you can add a directory to the search paths by setting the -1: LIBCIFPP_DATA_DIR environmental variable) -1: -1: On Linux an optional cron script might have been installed that automatically updates -1: components.cif and mmCIF dictionary files. This script only works when the file -1: libcifpp.conf contains an uncommented line with the text: -1: -1: update=true -1: -1: If you do not have a working cron script, you can manually update the files -1: in /var/cache/libcifpp using the following commands: -1: -1: curl -o /var/cache/libcifpp/components.cif https://files.wwpdb.org/pub/pdb/data/monomers/components.cif -1: curl -o /var/cache/libcifpp/mmcif_pdbx.dic https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic -1: curl -o /var/cache/libcifpp/mmcif_ma.dic https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic -1: -1: The current order of compound factory objects is: -1: -1: CCD components file: "/build/reproducible-path/libcifpp-7.0.7/test/REA_v2.cif" -1: CCD components file: "/build/reproducible-path/libcifpp-7.0.7/test/HEM.cif" -1: CCD components.cif resource -1: -1: The following named resources were loaded: -1: components.cif -> "/build/reproducible-path/libcifpp-7.0.7/test/../rsrc/ccd-subset.cif" -1: mmcif_pdbx.dic -> "/build/reproducible-path/libcifpp-7.0.7/test/../rsrc/mmcif_pdbx.dic" 5: ATOM 21 C CG . PHE A 1 3 ? 19.073 17.128 38.750 1.00 11.85 ? 3 PHE A CG 1 5: ATOM 22 C CD1 . PHE A 1 3 ? 18.066 16.646 39.581 1.00 10.90 ? 3 PHE A CD1 1 5: ATOM 23 C CD2 . PHE A 1 3 ? 19.189 16.588 37.475 1.00 13.26 ? 3 PHE A CD2 1 @@ -5719,10 +5759,6 @@ 5: A 9 10 N SER A 83 ? N SER A 83 O PHE A 71 ? O PHE A 71 5: # 5: Skipping validation of empty category pdbx_branch_scheme -4: =============================================================================== -4: All tests passed (8500 assertions in 6 test cases) -4: -3/8 Test #4: model-test ....................... Passed 0.49 sec 5: data_1CBS 5: # 5: _entry.id 1CBS @@ -8056,8 +8092,8 @@ 5: test cases: 1 | 1 passed 5: assertions: - none - 5: -4/8 Test #5: rename-compound-test ............. Passed 0.52 sec 1: Choosing X-PLOR version '' as refinement program. Score = 1 +4/8 Test #5: rename-compound-test ............. Passed 1.46 sec 1: Adding mandatory item value to category pdbx_struct_assembly_prop 1: Adding mandatory item conn_type_id to category struct_conn 1: Adding mandatory item ptnr1_label_asym_id to category struct_conn @@ -8070,30 +8106,30 @@ 1: =============================================================================== 1: All tests passed (100465 assertions in 51 test cases) 1: -5/8 Test #1: unit-v2-test ..................... Passed 0.78 sec -7: Randomness seeded to: 573432994 -7: =============================================================================== -7: test cases: 3 | 3 passed -7: assertions: - none - -7: -6/8 Test #7: spinner-test ..................... Passed 5.76 sec -2: Randomness seeded to: 1645302134 +5/8 Test #1: unit-v2-test ..................... Passed 2.15 sec +2: Randomness seeded to: 2526670964 2: (1.70711,1.70711,0) 2: =============================================================================== 2: All tests passed (5099624 assertions in 15 test cases) 2: -7/8 Test #2: unit-3d-test ..................... Passed 7.96 sec -6: Randomness seeded to: 1573184825 +6/8 Test #2: unit-3d-test ..................... Passed 5.23 sec +7: Randomness seeded to: 167728986 +7: =============================================================================== +7: test cases: 3 | 3 passed +7: assertions: - none - +7: +7/8 Test #7: spinner-test ..................... Passed 6.97 sec +6: Randomness seeded to: 2021806188 6: =============================================================================== 6: All tests passed (10 assertions in 2 test cases) 6: -8/8 Test #6: sugar-test ....................... Passed 10.63 sec +8/8 Test #6: sugar-test ....................... Passed 17.70 sec 100% tests passed, 0 tests failed out of 8 -Total Test time (real) = 10.81 sec +Total Test time (real) = 17.83 sec make[1]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' - rm -fr -- /tmp/dh-xdg-rundir-qy3mEYU6 + rm -fr -- /tmp/dh-xdg-rundir-dsMGn4Ks create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/libcifpp-dev.substvars debian/libcifpp-doc.substvars debian/libcifpp7.substvars debian/libcifpp-data.substvars @@ -8102,7 +8138,7 @@ install -m0755 -d debian/libcifpp-data/etc/libcifpp/cache-update.d dh_auto_install install -m0755 -d /build/reproducible-path/libcifpp-7.0.7/debian/tmp - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/libcifpp-7.0.7/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/libcifpp-7.0.7/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libcifpp-7.0.7 -B/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -8155,710 +8191,710 @@ A configuration file has been written to /etc/libcifpp.conf, please edit this file to enable automatic updates -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/etc/libcifpp/cache-update.d -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/model.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/searchindex.js --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/resources.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/basics.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/resources.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/model.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/index.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/symmetry.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/basics.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1ae338b65793c18872e8bcdfe6a534c83b.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a04692e2c6a26c3dd823891c93aa68c46.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1ae025ebbaf906da6b0e66d3fa6657c536.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/typedef_namespacecif_1a2551a5f548db36f37a54c902a7159580.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/dir_cif++.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1acc9c4c9512361698933ffd748de9840d.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a65ac1856b4a8a6675e6a0f0d9b5edfaa.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/unabridged_orphan.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/enum_namespacecif_1a701ee5c69b8bf4a14c0807d32581e87d.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/enum_namespacecif_1a339253d4b856d267db110e2e55b6fa46.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1row__handle.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1iterator__impl_3_01Category_00_01T_01_4.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/program_listing_file_cif++_pdb_tls.hpp.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/structcif_1_1type__validator.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_pdb_8hpp_1a0d8dcb296d80df362a6d47d62b9e01c9.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1ab9c1b63f260c9ccc3740971d6ca755c7.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/namespace_cif.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/structcif_1_1colour_1_1detail_1_1coloured__string__t.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/program_listing_file_cif++_pdb_io.hpp.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/file_cif++_iterator.hpp.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a0987fe676d4bf9554de808bfe9b13a6b.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1ac0f43cdcc8b1ba95aae5fa92f623993d.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/structcif_1_1category_1_1item__entry.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/structcif_1_1point__type.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/structcif_1_1space__group.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/file_cif++_row.hpp.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_model_8hpp_1ab82fb33002132ca78f0f0de0855a9883.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a91dadafdbe6019e5215f9992dc67ca4c.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1gzio_1_1basic__ostream.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1ab91dfb39e9ee43942c5d384f161b97f3.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a277d04e4939dd9a5167dc90c21c00266.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1matrix__expression.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/program_listing_file_cif++_pdb_cif2pdb.hpp.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a302fdd5a6fea6ea6a874f4e635bd43e3.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/structcif_1_1symop__data.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/enum_namespacecif_1abd4c1fac9978e10628b9317d386d9287.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/file_cif++_point.hpp.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1ac3d9a984c107208b0abbabe5f9e05289.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a0cf4d792e3cf8fb29aa18b8c585b1426.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_pdb_8hpp_1a5f015134e46f13c6ef9eb9ed84b66d1a.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1ab97c8f7af37ad32ee1e96218eef8e0e1.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1ad57ceedd9a74df6a781247532781c5fa.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_condition_8hpp_1ae3fb5e492867225091edeba773f91d39.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1mm_1_1branch.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1compound__factory.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a470ad3905a4aa5fe52da998640740ab7.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a0f6dd8dc18df398b116c0c2343c2cfee.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/file_cif++_exports.hpp.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1cell.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a26cac7b3c044dff1bdcac52425e775f9.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1conditional__iterator__proxy.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1ab173f10abbd57122dbfd669f30af5509.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1matrix__scalar__multiplication.rst.txt --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/typedef_namespacecif_1aaca06426423d3d411d330b53965e1b2d.rst.txt --- Installing: 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Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix__subtraction.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ad3654e07e2f3102ac503499fa51d930f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1structure.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_symmetry.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1abce4bb85397326d1c0a079f43048fa18.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_exports_8hpp_1aab9ff10a498bf7bb72ce703e00c6551c.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1aee0d4f8adeaf464b4201156efbb97f73.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ab91dfb39e9ee43942c5d384f161b97f3.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1missing__key__error.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a0987fe676d4bf9554de808bfe9b13a6b.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__ifstream.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1parse__error.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_pdb.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ae338b65793c18872e8bcdfe6a534c83b.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8c495f22c9ff90161b1ae539552e02aa.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1item__value.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a5a94d01c3d87fb157ae322b347129e56.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_exports.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_text.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1empty__type.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a57a7530364c9dfa84f8607824e6d70e3.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_datablock.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_file.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a9ebb6f223c638daee2bc1bf285be72c8.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__igzip__streambuf.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/dir_cif++_pdb.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8c894208d05a89ca79ed66421d241f0f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ac3d9a984c107208b0abbabe5f9e05289.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1residue.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1progress__bar.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ac0f43cdcc8b1ba95aae5fa92f623993d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a8442a8beb3ec3862b1223091ba279b3f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aa697ec53ac311721d137e96508fe6268.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a9a07496ad027d7f53edeba05b8946d15.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a27048ca516d6ab9d61b330b3ae27b37f.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ad3654e07e2f3102ac503499fa51d930f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ac0219abe114a15fecf35b9305c6a51b9.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1item__alias.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1ab059fcaf3572f71d81e93484789bc0e0.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a867dc9c21324a3e65a931bb4d7160a9e.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a2551a5f548db36f37a54c902a7159580.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/page_deprecated.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a9579bd6dc036aa07dcb73e9724cd4f54.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_text.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_utilities_8hpp_1abd165ee6474b5b75bf075842fff13a04.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a3f5264d06e1b2326aadfae8b3b114414.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_gzio_8hpp_1a584b8865c9038c4eeba40de7d4a9f1aa.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2db5caf5ac5cd4376f29255fa9eebbc0.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a470ad3905a4aa5fe52da998640740ab7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_matrix.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb_pdb2cif.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1ae5965db5577f7f70118a5d976232d966.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__literals.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1space__group.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1sym__op.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a7555a1d6c76bc1cef206fab9a8d67fad.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__pdb.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1monomer.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_parser.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_condition_8hpp_1ae3fb5e492867225091edeba773f91d39.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ab4b982e1dc64e54d408cf8a9a99a2851.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a4c27e27d4cb70a2e13cf2efb05ccd325.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix__scalar__multiplication.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8250f4461c4b297082270bc37e532b88.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1datablock.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a277d04e4939dd9a5167dc90c21c00266.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1atom__type__traits_1_1SFData.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1parser.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1symmetric__matrix__fixed.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1link__validator.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_exports_8hpp_1a34c1ecdfe0e74030d387cc4e3db0f20d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_model.hpp.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a490147eab255051c58bc3d7d16471e17.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ac0219abe114a15fecf35b9305c6a51b9.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1point__type.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1row__initializer.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1atom.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a636b6271c6af17a0d73dbe4557061c03.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_model_8hpp_1aaaea875b497445410924763ba322f0f4.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1polymer.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1abce4bb85397326d1c0a079f43048fa18.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_symmetry_8hpp_1a5a53cac9d72c839c804fd7619f764d67.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_validate.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1multiple__results__error.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1compound.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_item.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_utilities.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a8dcfa853b7f2c8b6dcc921d0c646ab46.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a88b677fc53a3f1e8e0f15cdb6dc52cb7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1quaternion__type.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1category.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a4c27e27d4cb70a2e13cf2efb05ccd325.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb_io.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a1425b605f99bf04eeb638f55c0d91566.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_model_8hpp_1a6085af7e2c3294d3d5520e387757e8dd.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a02741e5ba23265cacfda366089d13f00.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__detail.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a26cac7b3c044dff1bdcac52425e775f9.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a3beb1e1704887c34c3ffcf62ba4c93a2.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1af6e09fd9a34540b7718e7f76a0029629.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1spherical__dots.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__ofstream.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2a94aaedfb605f4e6a403e8790ee4cfd.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a7b0b6dec945a1157aa9d455fd35494df.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_condition.hpp.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1ae5e65dddeeceb84cd55b772eaca216c7.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a0cf4d792e3cf8fb29aa18b8c585b1426.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a75df878566a514b909141bad937280f4.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aae2f02104c912443c2f40b2647803ccb.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a0987fe676d4bf9554de808bfe9b13a6b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ae338b65793c18872e8bcdfe6a534c83b.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1afdee9d0ba328b6dc1219e83b128b003b.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb_pdb2cif.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_iterator.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1duplicate__key__error.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a8dcfa853b7f2c8b6dcc921d0c646ab46.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_exports.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a7555a1d6c76bc1cef206fab9a8d67fad.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2e9af2d268ca7932d3b5df430dfabfe7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a277d04e4939dd9a5167dc90c21c00266.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1validator.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix__subtraction.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a89f948a7392e875f87012ca961060cb3.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb_io.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_utilities.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_condition.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8f9736ac0d35666ef1a68f02705b8507.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_forward_decl.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a4c9bbe02598ccb179023f7d9ed18f4e9.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__colour__detail.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_compound.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aaede7d3ae547f8c18450a83b6bcc42e2.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1acc9c4c9512361698933ffd748de9840d.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a74bfe90596358d194adfab0eb0054b79.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1condition.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_pdb_pdb2cif.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1symop__data.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a561da00d019d125f7356b8717771b6b6.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb_tls.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1ab059fcaf3572f71d81e93484789bc0e0.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_gzio_8hpp_1a584b8865c9038c4eeba40de7d4a9f1aa.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a481dab6db30774c8562d83bb5182cc7b.html --- Installing: 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+-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a3fa150213a7a95d9d013b5faeae2d5f2.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1atom__type__traits.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a6e1d07f3689961d3ec0d1e7cbfeefc6f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a4c9bbe02598ccb179023f7d9ed18f4e9.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1cell.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a22f8e0bb538e176ebddfe89c7ef03a6d.html +-- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_pdb_cif2pdb.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a9dbdac69f3a21d391ece6cc214da3075.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a2551a5f548db36f37a54c902a7159580.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a26cac7b3c044dff1bdcac52425e775f9.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_pdb_io.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__ogzip__streambuf.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a04692e2c6a26c3dd823891c93aa68c46.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_validate.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a9a46e6bb8184b5c4b2867e50d4bafd46.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1file.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a481dab6db30774c8562d83bb5182cc7b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a5a94d01c3d87fb157ae322b347129e56.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a561da00d019d125f7356b8717771b6b6.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a9347107ebb4ef72dca122c3285453c4f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_exports_8hpp_1a42700069adcc34faeda32076bd173dc1.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a0cdfe208e415aa2b34e1277e5de112cb.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a9a07496ad027d7f53edeba05b8946d15.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a91dadafdbe6019e5215f9992dc67ca4c.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb_tls.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2b6f06460cea1b44770b316c8c5d4b06.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_pdb_cif2pdb.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aeb2069c34c7d86acc4418d3740adf5d8.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1abbc95fb717f14cca92d73ff5ed83c685.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a17188febf04153361cad42eb042da64a.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a016b23e15d2a1d5f8121a697d7bec68e.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1aeffd144259eee54425fd70df1a4c119a.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1key.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ab173f10abbd57122dbfd669f30af5509.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1iless.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a636b6271c6af17a0d73dbe4557061c03.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_model_8hpp_1ab82fb33002132ca78f0f0de0855a9883.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_format.hpp.html +-- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__ostream.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__ofstream.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a1c875e7bda01246ff90860b7228b89b9.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_condition.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a337647d2ca82951e159b244e0a892f0e.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1category_1_1item__entry.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a5ae3b948c3296e47bf3ae734cfdca029.html --- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_category.hpp.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ae025ebbaf906da6b0e66d3fa6657c536.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_symmetry_8hpp_1a5a53cac9d72c839c804fd7619f764d67.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a1020ee51b50043210b5e9c8eaecd4c28.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a6e1d07f3689961d3ec0d1e7cbfeefc6f.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8864838e9763e207066cdbb217920f21.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ad0c5beb6c8ad7621c2ec415432b33c48.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1colour_1_1detail_1_1coloured__string__t.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1identity__matrix.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1parse__error.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_parser.hpp.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ad6daf4b6c782edbfeb0236e71f9e6ae1.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_model_8hpp_1ab82fb33002132ca78f0f0de0855a9883.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_model_8hpp_1a04742ae1684db656d2534463f850eb37.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a449c5d43d72a9779d3338c2882d13e36.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a1cb6fb0735b49d0e7796d223763718e4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_gzio_8hpp_1a1cc3c9e961807f24cc997b0fdfbe76a6.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a94db0d39a3d82bde5ae35a2d5a729dce.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1spacegroup.html --- Installing: 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Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1sac__parser.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ab91dfb39e9ee43942c5d384f161b97f3.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a5ae3b948c3296e47bf3ae734cfdca029.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1missing__key__error.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ad8a62060b4918e8fcdba571adcde4295.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a1c4c3a9495336c603c5f3d7f77f4dc64.html -- Installing: 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Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ad57ceedd9a74df6a781247532781c5fa.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_utilities.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_file.hpp.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a89a5f58c129d13c01bd68e91d4a0c7a1.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a6eb3f608312210636d8d4bd3fd69745a.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_format.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a4f2dd5c988ef77316bb4fdda57146fd5.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ab80f7d084a897f8654fecdcbe4c598ba.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_model_8hpp_1a6085af7e2c3294d3d5520e387757e8dd.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_utilities_8hpp_1abd165ee6474b5b75bf075842fff13a04.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a3f5264d06e1b2326aadfae8b3b114414.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2b6f06460cea1b44770b316c8c5d4b06.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1acc0e956a0d6382e85c6ecb631e2edd21.html --- Installing: 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Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a1cb6fb0735b49d0e7796d223763718e4.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_pdb_tls.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a965679d61a80ce38487bb63eb1759281.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_category.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_symmetry.hpp.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/page_deprecated.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_exports_8hpp_1a42700069adcc34faeda32076bd173dc1.html --- Installing: 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+-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.woff2 -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/pygments.css --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/jquery.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Bold.woff2 +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/basic.css +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/documentation_options.js -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/_sphinx_javascript_frameworks_compat.js --- Installing: 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Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1spherical__dots.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a016b23e15d2a1d5f8121a697d7bec68e.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_pdb_8hpp_1a429736e305a06f11b86700d76f8b1ac3.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a337647d2ca82951e159b244e0a892f0e.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a89f948a7392e875f87012ca961060cb3.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/program_listing_file_cif++_pdb_pdb2cif.hpp.rst.txt +-- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/resources.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/symmetry.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/basics.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/model.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/bitsandpieces.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/genindex.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/compound.rst.txt -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/index.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/basics.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/bitsandpieces.html make[1]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-x86_64-linux-gnu' dh_install install -m0755 -d debian/libcifpp-dev//usr @@ -8890,18 +8926,18 @@ install -m0755 -d debian/libcifpp-data/usr/share/doc/libcifpp-data install -p -m0644 debian/copyright debian/libcifpp-data/usr/share/doc/libcifpp-data/copyright dh_installchangelogs - install -m0755 -d debian/libcifpp-data/usr/share/doc/libcifpp-data - install -p -m0644 debian/.debhelper/generated/libcifpp-data/dh_installchangelogs.dch.trimmed debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog.Debian - install -p -m0644 ./changelog debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog - install -m0755 -d debian/libcifpp7/usr/share/doc/libcifpp7 - install -p -m0644 debian/.debhelper/generated/libcifpp7/dh_installchangelogs.dch.trimmed debian/libcifpp7/usr/share/doc/libcifpp7/changelog.Debian - install -p -m0644 ./changelog debian/libcifpp7/usr/share/doc/libcifpp7/changelog install -m0755 -d debian/libcifpp-dev/usr/share/doc/libcifpp-dev install -p -m0644 debian/.debhelper/generated/libcifpp-dev/dh_installchangelogs.dch.trimmed debian/libcifpp-dev/usr/share/doc/libcifpp-dev/changelog.Debian install -p -m0644 ./changelog debian/libcifpp-dev/usr/share/doc/libcifpp-dev/changelog install -m0755 -d debian/libcifpp-doc/usr/share/doc/libcifpp-doc install -p -m0644 debian/.debhelper/generated/libcifpp-doc/dh_installchangelogs.dch.trimmed debian/libcifpp-doc/usr/share/doc/libcifpp-doc/changelog.Debian install -p -m0644 ./changelog debian/libcifpp-doc/usr/share/doc/libcifpp-doc/changelog + install -m0755 -d debian/libcifpp-data/usr/share/doc/libcifpp-data + install -p -m0644 debian/.debhelper/generated/libcifpp-data/dh_installchangelogs.dch.trimmed debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog.Debian + install -p -m0644 ./changelog debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog + install -m0755 -d debian/libcifpp7/usr/share/doc/libcifpp7 + install -p -m0644 debian/.debhelper/generated/libcifpp7/dh_installchangelogs.dch.trimmed debian/libcifpp7/usr/share/doc/libcifpp7/changelog.Debian + install -p -m0644 ./changelog debian/libcifpp7/usr/share/doc/libcifpp7/changelog dh_installexamples install -m0755 -d debian/libcifpp-dev/usr/share/doc/libcifpp-dev/examples cp --reflink=auto -a ./examples/1cbs.cif.gz debian/libcifpp-dev/usr/share/doc/libcifpp-dev/examples @@ -8928,24 +8964,24 @@ Using 1730185215 as canonical time Normalizing debian/libcifpp-dev/usr/share/doc/libcifpp-dev/examples/1cbs.cif.gz using File::StripNondeterminism::handlers::gzip Using 1730185215 as canonical time - Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/plus.png using File::StripNondeterminism::handlers::png + Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/file.png using File::StripNondeterminism::handlers::png dh_compress + cd debian/libcifpp-doc cd debian/libcifpp-dev cd debian/libcifpp-data cd debian/libcifpp7 - cd debian/libcifpp-doc - chmod a-x usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian - chmod a-x usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian chmod a-x usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian - gzip -9nf usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian - gzip -9nf usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian gzip -9nf usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian chmod a-x usr/share/doc/libcifpp-doc/changelog usr/share/doc/libcifpp-doc/changelog.Debian usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf - cd '/build/reproducible-path/libcifpp-7.0.7' gzip -9nf usr/share/doc/libcifpp-doc/changelog usr/share/doc/libcifpp-doc/changelog.Debian usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf cd '/build/reproducible-path/libcifpp-7.0.7' + chmod a-x usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian + gzip -9nf usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian + chmod a-x usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian + gzip -9nf usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian + cd '/build/reproducible-path/libcifpp-7.0.7' cd '/build/reproducible-path/libcifpp-7.0.7' cd '/build/reproducible-path/libcifpp-7.0.7' dh_fixperms @@ -8953,21 +8989,21 @@ find debian/libcifpp-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcifpp7 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcifpp-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libcifpp-data/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp7/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp7/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp-data/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcifpp7/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/libcifpp-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcifpp7 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libcifpp-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcifpp7/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libcifpp-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libcifpp-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w - find debian/libcifpp-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcifpp-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libcifpp-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a dwz -- debian/libcifpp7/usr/lib/x86_64-linux-gnu/libcifpp.so.7.0.7 @@ -9017,47 +9053,47 @@ echo misc:Depends= >> debian/libcifpp-doc.substvars echo misc:Pre-Depends= >> debian/libcifpp-doc.substvars dpkg-gencontrol -plibcifpp-doc -ldebian/changelog -Tdebian/libcifpp-doc.substvars -cdebian/control -Pdebian/libcifpp-doc + install -m0755 -d debian/libcifpp-dev/DEBIAN + echo misc:Depends= >> debian/libcifpp-dev.substvars + echo misc:Pre-Depends= >> debian/libcifpp-dev.substvars + dpkg-gencontrol -plibcifpp-dev -ldebian/changelog -Tdebian/libcifpp-dev.substvars -cdebian/control -Pdebian/libcifpp-dev install -m0755 -d debian/libcifpp7/DEBIAN echo misc:Depends= >> debian/libcifpp7.substvars echo misc:Pre-Depends= >> debian/libcifpp7.substvars install -m0755 -d debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN dpkg-gencontrol -plibcifpp7 -ldebian/changelog -Tdebian/libcifpp7.substvars -cdebian/control -Pdebian/.debhelper/libcifpp7/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libcifpp7-dbgsym "-DDepends=libcifpp7 (= \${binary:Version})" "-DDescription=debug symbols for libcifpp7" -DBuild-Ids=72a30cd3296f07e2d29e64f837b1fda04d7fc6b9 -DSection=debug -UReplaces -UBreaks - install -m0755 -d debian/libcifpp-dev/DEBIAN - echo misc:Depends= >> debian/libcifpp-dev.substvars - echo misc:Pre-Depends= >> debian/libcifpp-dev.substvars - dpkg-gencontrol -plibcifpp-dev -ldebian/changelog -Tdebian/libcifpp-dev.substvars -cdebian/control -Pdebian/libcifpp-dev - chmod 0644 -- debian/libcifpp-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibcifpp7 -ldebian/changelog -Tdebian/libcifpp7.substvars -cdebian/control -Pdebian/libcifpp7 - chmod 0644 -- debian/libcifpp-data/DEBIAN/control + chmod 0644 -- debian/libcifpp-dev/DEBIAN/control chmod 0644 -- debian/libcifpp-doc/DEBIAN/control chmod 0644 -- debian/libcifpp7/DEBIAN/control + chmod 0644 -- debian/libcifpp-data/DEBIAN/control dh_md5sums + install -m0755 -d debian/libcifpp-dev/DEBIAN + install -m0755 -d debian/libcifpp-doc/DEBIAN install -m0755 -d debian/libcifpp-data/DEBIAN - cd debian/libcifpp-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/libcifpp7/DEBIAN - install -m0755 -d debian/libcifpp-doc/DEBIAN - install -m0755 -d debian/libcifpp-dev/DEBIAN - cd debian/libcifpp7 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - cd debian/libcifpp-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libcifpp-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/libcifpp-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/libcifpp7 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/libcifpp-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libcifpp-dev/DEBIAN/md5sums chmod 0644 -- debian/libcifpp7/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN - chmod 0644 -- debian/libcifpp-data/DEBIAN/md5sums cd debian/.debhelper/libcifpp7/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN/md5sums + chmod 0644 -- debian/libcifpp-data/DEBIAN/md5sums chmod 0644 -- debian/libcifpp-doc/DEBIAN/md5sums + chmod 0644 -- debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN/md5sums dh_builddeb - dpkg-deb --root-owner-group --build debian/libcifpp7 .. - dpkg-deb --root-owner-group --build debian/libcifpp-dev .. - dpkg-deb --root-owner-group --build debian/.debhelper/libcifpp7/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libcifpp-data .. + dpkg-deb --root-owner-group --build debian/libcifpp7 .. dpkg-deb --root-owner-group --build debian/libcifpp-doc .. -dpkg-deb: building package 'libcifpp7-dbgsym' in '../libcifpp7-dbgsym_7.0.7-3_amd64.deb'. -dpkg-deb: building package 'libcifpp7' in '../libcifpp7_7.0.7-3_amd64.deb'. + dpkg-deb --root-owner-group --build debian/.debhelper/libcifpp7/dbgsym-root .. + dpkg-deb --root-owner-group --build debian/libcifpp-dev .. dpkg-deb: building package 'libcifpp-data' in '../libcifpp-data_7.0.7-3_all.deb'. dpkg-deb: building package 'libcifpp-doc' in '../libcifpp-doc_7.0.7-3_all.deb'. +dpkg-deb: building package 'libcifpp7-dbgsym' in '../libcifpp7-dbgsym_7.0.7-3_amd64.deb'. +dpkg-deb: building package 'libcifpp7' in '../libcifpp7_7.0.7-3_amd64.deb'. dpkg-deb: building package 'libcifpp-dev' in '../libcifpp-dev_7.0.7-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libcifpp_7.0.7-3_amd64.buildinfo dpkg-genchanges --build=binary -O../libcifpp_7.0.7-3_amd64.changes @@ -9066,12 +9102,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1019291/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1019291/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/254715 and its subdirectories -I: Current time: Tue Dec 9 12:30:59 -12 2025 -I: pbuilder-time-stamp: 1765326659 +I: removing directory /srv/workspace/pbuilder/1019291 and its subdirectories +I: Current time: Thu Nov 7 08:23:30 +14 2024 +I: pbuilder-time-stamp: 1730917410