Diff of the two buildlogs: -- --- b1/build.log 2024-11-12 05:14:16.256751774 +0000 +++ b2/build.log 2024-11-12 05:25:15.457266632 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Dec 14 23:33:59 -12 2025 -I: pbuilder-time-stamp: 1765798439 +I: Current time: Tue Nov 12 19:14:20 +14 2024 +I: pbuilder-time-stamp: 1731388460 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking libbeam-java_1.3.7-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3398707/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3592244/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 12 05:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3592244/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3592244/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='fa797374779a45a992b3ef25a7eb6cf3' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3398707' - PS1='# ' - PS2='> ' + INVOCATION_ID=e44b2998f7414527b2d1444408347689 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3592244 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iUKaFogw/pbuilderrc_onZb --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iUKaFogw/b1 --logfile b1/build.log libbeam-java_1.3.7-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iUKaFogw/pbuilderrc_aXrY --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iUKaFogw/b2 --logfile b2/build.log libbeam-java_1.3.7-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3398707/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3592244/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -403,7 +435,7 @@ Get: 282 http://deb.debian.org/debian trixie/main amd64 maven-repo-helper all 1.11 [142 kB] Get: 283 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-28 [166 kB] Get: 284 http://deb.debian.org/debian trixie/main amd64 maven-debian-helper all 2.6.5 [108 kB] -Fetched 265 MB in 10s (27.1 MB/s) +Fetched 265 MB in 13s (21.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) @@ -1763,7 +1795,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libbeam-java-1.3.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbeam-java_1.3.7-1_source.changes +I: user script /srv/workspace/pbuilder/3592244/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3592244/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libbeam-java-1.3.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbeam-java_1.3.7-1_source.changes dpkg-buildpackage: info: source package libbeam-java dpkg-buildpackage: info: source version 1.3.7-1 dpkg-buildpackage: info: source distribution unstable @@ -1832,8 +1868,8 @@ [WARNING] source value 8 is obsolete and will be removed in a future release [WARNING] target value 8 is obsolete and will be removed in a future release [WARNING] To suppress warnings about obsolete options, use -Xlint:-options. -[INFO] /build/reproducible-path/libbeam-java-1.3.7/core/src/test/java/uk/ac/ebi/beam/ConfigurationTest.java: Some input files use or override a deprecated API. -[INFO] /build/reproducible-path/libbeam-java-1.3.7/core/src/test/java/uk/ac/ebi/beam/ConfigurationTest.java: Recompile with -Xlint:deprecation for details. +[INFO] /build/reproducible-path/libbeam-java-1.3.7/core/src/test/java/uk/ac/ebi/beam/ElementTest.java: Some input files use or override a deprecated API. +[INFO] /build/reproducible-path/libbeam-java-1.3.7/core/src/test/java/uk/ac/ebi/beam/ElementTest.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ beam-core --- [INFO] Tests are skipped. @@ -1869,8 +1905,8 @@ [WARNING] source value 8 is obsolete and will be removed in a future release [WARNING] target value 8 is obsolete and will be removed in a future release [WARNING] To suppress warnings about obsolete options, use -Xlint:-options. -[INFO] /build/reproducible-path/libbeam-java-1.3.7/func/src/test/java/uk/ac/ebi/beam/ImplicitToExplicitTest.java: Some input files use or override a deprecated API. -[INFO] /build/reproducible-path/libbeam-java-1.3.7/func/src/test/java/uk/ac/ebi/beam/ImplicitToExplicitTest.java: Recompile with -Xlint:deprecation for details. +[INFO] /build/reproducible-path/libbeam-java-1.3.7/func/src/test/java/uk/ac/ebi/beam/RemoveUpDownBondsTest.java: Some input files use or override a deprecated API. +[INFO] /build/reproducible-path/libbeam-java-1.3.7/func/src/test/java/uk/ac/ebi/beam/RemoveUpDownBondsTest.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ beam-func --- [INFO] Tests are skipped. @@ -1908,15 +1944,15 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for beam 1.3.7: [INFO] -[INFO] beam ............................................... SUCCESS [ 0.003 s] -[INFO] beam-core .......................................... SUCCESS [ 14.711 s] -[INFO] beam-func .......................................... SUCCESS [ 2.775 s] -[INFO] beam-exec .......................................... SUCCESS [ 0.620 s] +[INFO] beam ............................................... SUCCESS [ 0.015 s] +[INFO] beam-core .......................................... SUCCESS [ 42.487 s] +[INFO] beam-func .......................................... SUCCESS [ 4.363 s] +[INFO] beam-exec .......................................... SUCCESS [ 2.101 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 18.581 s -[INFO] Finished at: 2025-12-15T11:35:44Z +[INFO] Total time: 50.080 s +[INFO] Finished at: 2024-11-12T05:22:27Z [INFO] ------------------------------------------------------------------------ dh_auto_test /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/libbeam-java-1.3.7 -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/libbeam-java-1.3.7/debian -Dmaven.repo.local=/build/reproducible-path/libbeam-java-1.3.7/debian/maven-repo --batch-mode test @@ -1961,36 +1997,36 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.ebi.beam.IntSetTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.046 s - in uk.ac.ebi.beam.IntSetTest -[INFO] Running uk.ac.ebi.beam.ElectronAssignmentTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.ElectronAssignmentTest -[INFO] Running uk.ac.ebi.beam.BondTest -[INFO] Tests run: 26, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.ebi.beam.BondTest [INFO] Running uk.ac.ebi.beam.MaximumMatchingTest -[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 s - in uk.ac.ebi.beam.MaximumMatchingTest -[INFO] Running uk.ac.ebi.beam.ArbitraryMatchingTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.ArbitraryMatchingTest -[INFO] Running uk.ac.ebi.beam.ParsingAtomClassTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in uk.ac.ebi.beam.ParsingAtomClassTest -[INFO] Running uk.ac.ebi.beam.CharBufferTest -[INFO] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.ebi.beam.CharBufferTest -[INFO] Running uk.ac.ebi.beam.AtomBuilderTest -[INFO] Tests run: 31, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.018 s - in uk.ac.ebi.beam.AtomBuilderTest -[INFO] Running uk.ac.ebi.beam.ElementTest -[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.ElementTest -[INFO] Running uk.ac.ebi.beam.OpenSMILESSpecificationTest -[INFO] Tests run: 144, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.169 s - in uk.ac.ebi.beam.OpenSMILESSpecificationTest -[INFO] Running uk.ac.ebi.beam.DaylightRoundTrippingTest -[INFO] Tests run: 70, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in uk.ac.ebi.beam.DaylightRoundTrippingTest -[INFO] Running uk.ac.ebi.beam.DaylightDelocalisationTest -[INFO] Tests run: 95, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.082 s - in uk.ac.ebi.beam.DaylightDelocalisationTest +[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.96 s - in uk.ac.ebi.beam.MaximumMatchingTest +[INFO] Running uk.ac.ebi.beam.ParsingAtomChargeTest +[INFO] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 s - in uk.ac.ebi.beam.ParsingAtomChargeTest [INFO] Running uk.ac.ebi.beam.ValenceTest -[INFO] Tests run: 60, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.ValenceTest -[INFO] Running uk.ac.ebi.beam.MatchingTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.MatchingTest +[INFO] Tests run: 60, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.233 s - in uk.ac.ebi.beam.ValenceTest +[INFO] Running uk.ac.ebi.beam.EdgeTest +[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in uk.ac.ebi.beam.EdgeTest [INFO] Running uk.ac.ebi.beam.BiconnectedComponentsTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.BiconnectedComponentsTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.BiconnectedComponentsTest +[INFO] Running uk.ac.ebi.beam.DaylightRoundTrippingTest +[INFO] Tests run: 70, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.376 s - in uk.ac.ebi.beam.DaylightRoundTrippingTest +[INFO] Running uk.ac.ebi.beam.UnionFindTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in uk.ac.ebi.beam.UnionFindTest +[INFO] Running uk.ac.ebi.beam.IntStackTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.IntStackTest +[INFO] Running uk.ac.ebi.beam.AtomBuilderTest +[INFO] Tests run: 31, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.068 s - in uk.ac.ebi.beam.AtomBuilderTest +[INFO] Running uk.ac.ebi.beam.AtomCentricDBConfigTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.028 s - in uk.ac.ebi.beam.AtomCentricDBConfigTest +[INFO] Running uk.ac.ebi.beam.CharBufferTest +[INFO] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 s - in uk.ac.ebi.beam.CharBufferTest +[INFO] Running uk.ac.ebi.beam.GraphBuilderTest +[INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.143 s - in uk.ac.ebi.beam.GraphBuilderTest +[INFO] Running uk.ac.ebi.beam.IntSetTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in uk.ac.ebi.beam.IntSetTest +[INFO] Running uk.ac.ebi.beam.ElectronAssignmentTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.ebi.beam.ElectronAssignmentTest +[INFO] Running uk.ac.ebi.beam.AtomTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in uk.ac.ebi.beam.AtomTest [INFO] Running uk.ac.ebi.beam.ParserTest SMILES Warning: Ignored invalid Cis/Trans on ring closure, should flip: SMILES Warning: C/C=C/1.C/1 @@ -1999,36 +2035,36 @@ SMILES Warning: Ignored invalid Cis/Trans specification: SMILES Warning: C/C=C(/C)/F SMILES Warning: ^ ^ -[WARNING] Tests run: 49, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.002 s - in uk.ac.ebi.beam.ParserTest -[INFO] Running uk.ac.ebi.beam.ParsingBracketAtomTest -[INFO] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.ParsingBracketAtomTest -[INFO] Running uk.ac.ebi.beam.AtomTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.AtomTest -[INFO] Running uk.ac.ebi.beam.EdgeTest -[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.EdgeTest +[WARNING] Tests run: 49, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.226 s - in uk.ac.ebi.beam.ParserTest +[INFO] Running uk.ac.ebi.beam.OpenSMILESSpecificationTest +[INFO] Tests run: 144, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.348 s - in uk.ac.ebi.beam.OpenSMILESSpecificationTest [INFO] Running uk.ac.ebi.beam.GeneratorTest -[INFO] Tests run: 33, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.ebi.beam.GeneratorTest -[INFO] Running uk.ac.ebi.beam.ParsingAtomChargeTest -[INFO] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.ParsingAtomChargeTest -[INFO] Running uk.ac.ebi.beam.TopologyTest -[INFO] Tests run: 27, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.TopologyTest +[INFO] Tests run: 33, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.051 s - in uk.ac.ebi.beam.GeneratorTest +[INFO] Running uk.ac.ebi.beam.LocaliseTest +[INFO] Tests run: 79, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.354 s - in uk.ac.ebi.beam.LocaliseTest [INFO] Running uk.ac.ebi.beam.ParsingHydrogenCountTest [INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.ParsingHydrogenCountTest -[INFO] Running uk.ac.ebi.beam.IntStackTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.IntStackTest -[INFO] Running uk.ac.ebi.beam.GraphBuilderTest -[INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.GraphBuilderTest +[INFO] Running uk.ac.ebi.beam.TopologyTest +[INFO] Tests run: 27, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.TopologyTest +[INFO] Running uk.ac.ebi.beam.MatchingTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.MatchingTest +[INFO] Running uk.ac.ebi.beam.DaylightDelocalisationTest +[INFO] Tests run: 95, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.41 s - in uk.ac.ebi.beam.DaylightDelocalisationTest +[INFO] Running uk.ac.ebi.beam.ParsingAtomClassTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.ebi.beam.ParsingAtomClassTest [INFO] Running uk.ac.ebi.beam.ConfigurationTest -[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.ConfigurationTest +[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in uk.ac.ebi.beam.ConfigurationTest +[INFO] Running uk.ac.ebi.beam.ArbitraryMatchingTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in uk.ac.ebi.beam.ArbitraryMatchingTest [INFO] Running uk.ac.ebi.beam.GraphTest SMILES Warning: SquarePlanar without 5 explicit neighbours -[INFO] Tests run: 47, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.677 s - in uk.ac.ebi.beam.GraphTest -[INFO] Running uk.ac.ebi.beam.AtomCentricDBConfigTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.AtomCentricDBConfigTest -[INFO] Running uk.ac.ebi.beam.LocaliseTest -[INFO] Tests run: 79, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in uk.ac.ebi.beam.LocaliseTest -[INFO] Running uk.ac.ebi.beam.UnionFindTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.ebi.beam.UnionFindTest +[INFO] Tests run: 47, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 9.164 s - in uk.ac.ebi.beam.GraphTest +[INFO] Running uk.ac.ebi.beam.BondTest +[INFO] Tests run: 26, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in uk.ac.ebi.beam.BondTest +[INFO] Running uk.ac.ebi.beam.ElementTest +[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.029 s - in uk.ac.ebi.beam.ElementTest +[INFO] Running uk.ac.ebi.beam.ParsingBracketAtomTest +[INFO] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.077 s - in uk.ac.ebi.beam.ParsingBracketAtomTest [INFO] [INFO] Results: [INFO] @@ -2057,28 +2093,28 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.ebi.beam.FromSubsetAtomsTest -[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.491 s - in uk.ac.ebi.beam.FromSubsetAtomsTest -[INFO] Running uk.ac.ebi.beam.ToSubsetAtomsTest -[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.047 s - in uk.ac.ebi.beam.ToSubsetAtomsTest -[INFO] Running uk.ac.ebi.beam.FromTrigonalTopologyTest -[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.058 s - in uk.ac.ebi.beam.FromTrigonalTopologyTest [INFO] Running uk.ac.ebi.beam.ToTrigonalTopologyTest -[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 s - in uk.ac.ebi.beam.ToTrigonalTopologyTest -[INFO] Running uk.ac.ebi.beam.RemoveUpDownBondsTest -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.039 s - in uk.ac.ebi.beam.RemoveUpDownBondsTest +[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.235 s - in uk.ac.ebi.beam.ToTrigonalTopologyTest +[INFO] Running uk.ac.ebi.beam.ToSubsetAtomsTest +[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.155 s - in uk.ac.ebi.beam.ToSubsetAtomsTest +[INFO] Running uk.ac.ebi.beam.ImplicitToExplicitTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 8.645 s - in uk.ac.ebi.beam.ImplicitToExplicitTest [INFO] Running uk.ac.ebi.beam.ExplicitToImplicitTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in uk.ac.ebi.beam.ExplicitToImplicitTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 s - in uk.ac.ebi.beam.ExplicitToImplicitTest +[INFO] Running uk.ac.ebi.beam.RemoveUpDownBondsTest +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.077 s - in uk.ac.ebi.beam.RemoveUpDownBondsTest +[INFO] Running uk.ac.ebi.beam.AddDirectionalLabelsTest +[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.166 s - in uk.ac.ebi.beam.AddDirectionalLabelsTest +[INFO] Running uk.ac.ebi.beam.FromTrigonalTopologyTest +[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.05 s - in uk.ac.ebi.beam.FromTrigonalTopologyTest [INFO] Running uk.ac.ebi.beam.FunctionsTest [INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.028 s - in uk.ac.ebi.beam.FunctionsTest -[INFO] Running uk.ac.ebi.beam.BondBasedConfigurationTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in uk.ac.ebi.beam.BondBasedConfigurationTest -[INFO] Running uk.ac.ebi.beam.ImplicitToExplicitTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.496 s - in uk.ac.ebi.beam.ImplicitToExplicitTest -[INFO] Running uk.ac.ebi.beam.AddDirectionalLabelsTest -[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.056 s - in uk.ac.ebi.beam.AddDirectionalLabelsTest [INFO] Running uk.ac.ebi.beam.NormaliseDirectionalLabelsTest -[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.028 s - in uk.ac.ebi.beam.NormaliseDirectionalLabelsTest +[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.086 s - in uk.ac.ebi.beam.NormaliseDirectionalLabelsTest +[INFO] Running uk.ac.ebi.beam.FromSubsetAtomsTest +[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.078 s - in uk.ac.ebi.beam.FromSubsetAtomsTest +[INFO] Running uk.ac.ebi.beam.BondBasedConfigurationTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 s - in uk.ac.ebi.beam.BondBasedConfigurationTest [INFO] [INFO] Results: [INFO] @@ -2107,15 +2143,15 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for beam 1.3.7: [INFO] -[INFO] beam ............................................... SUCCESS [ 0.008 s] -[INFO] beam-core .......................................... SUCCESS [ 35.780 s] -[INFO] beam-func .......................................... SUCCESS [ 33.631 s] -[INFO] beam-exec .......................................... SUCCESS [ 0.103 s] +[INFO] beam ............................................... SUCCESS [ 0.016 s] +[INFO] beam-core .......................................... SUCCESS [ 54.784 s] +[INFO] beam-func .......................................... SUCCESS [ 45.391 s] +[INFO] beam-exec .......................................... SUCCESS [ 0.351 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 01:11 min -[INFO] Finished at: 2025-12-15T11:36:58Z +[INFO] Total time: 01:41 min +[INFO] Finished at: 2024-11-12T05:24:22Z [INFO] ------------------------------------------------------------------------ create-stamp debian/debhelper-build-stamp dh_prep @@ -2185,15 +2221,15 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for beam 1.3.7: [INFO] -[INFO] beam ............................................... SUCCESS [ 1.067 s] -[INFO] beam-core .......................................... SUCCESS [ 0.116 s] -[INFO] beam-func .......................................... SUCCESS [ 0.070 s] -[INFO] beam-exec .......................................... SUCCESS [ 0.092 s] +[INFO] beam ............................................... SUCCESS [ 3.535 s] +[INFO] beam-core .......................................... SUCCESS [ 0.408 s] +[INFO] beam-func .......................................... SUCCESS [ 0.224 s] +[INFO] beam-exec .......................................... SUCCESS [ 0.228 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 1.690 s -[INFO] Finished at: 2025-12-15T11:37:02Z +[INFO] Total time: 6.168 s +[INFO] Finished at: 2024-11-12T05:24:43Z [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -plibbeam-java --base-directory=/build/reproducible-path/libbeam-java-1.3.7 --non-explore Analysing pom.xml... @@ -2225,12 +2261,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3592244/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3592244/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3398707 and its subdirectories -I: Current time: Sun Dec 14 23:37:14 -12 2025 -I: pbuilder-time-stamp: 1765798634 +I: removing directory /srv/workspace/pbuilder/3592244 and its subdirectories +I: Current time: Tue Nov 12 19:25:14 +14 2024 +I: pbuilder-time-stamp: 1731389114