Diff of the two buildlogs:

--
--- b1/build.log	2025-03-05 22:20:56.628347236 +0000
+++ b2/build.log	2025-03-05 22:23:15.810047544 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Tue Apr  7 16:41:49 -12 2026
-I: pbuilder-time-stamp: 1775623309
+I: Current time: Thu Mar  6 12:20:58 +14 2025
+I: pbuilder-time-stamp: 1741213258
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
 I: copying local configuration
@@ -27,51 +27,83 @@
 dpkg-source: info: applying gcc-13-2.patch
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/1738098/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/3936010/tmp/hooks/D01_modify_environment starting
+debug: Running on infom01-amd64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Mar  5 22:21 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/3936010/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/3936010/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='amd64'
-  DEBIAN_FRONTEND='noninteractive'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
+  BASH_VERSION='5.2.37(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=amd64
+  DEBIAN_FRONTEND=noninteractive
   DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
-  DISTRIBUTION='trixie'
-  HOME='/root'
-  HOST_ARCH='amd64'
+  DIRSTACK=()
+  DISTRIBUTION=trixie
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=x86_64
+  HOST_ARCH=amd64
   IFS=' 	
   '
-  INVOCATION_ID='91e4e289927d485682f96b1379e3363b'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='1738098'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=7fcdb7c8d86142a08446394071a55caa
+  LANG=C
+  LANGUAGE=et_EE:et
+  LC_ALL=C
+  MACHTYPE=x86_64-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=3936010
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sExIoIzT/pbuilderrc_BVU0 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sExIoIzT/b1 --logfile b1/build.log ivar_1.4.4+dfsg-1.dsc'
-  SUDO_GID='109'
-  SUDO_UID='104'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sExIoIzT/pbuilderrc_RuGA --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sExIoIzT/b2 --logfile b2/build.log ivar_1.4.4+dfsg-1.dsc'
+  SUDO_GID=109
+  SUDO_UID=104
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
 I: uname -a
-  Linux infom02-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 6.1.0-31-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
 I: ls -l /bin
-  lrwxrwxrwx 1 root root 7 Nov 22  2024 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/1738098/tmp/hooks/D02_print_environment finished
+  lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/3936010/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -203,7 +235,7 @@
 Get: 92 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB]
 Get: 93 http://deb.debian.org/debian trixie/main amd64 liblzma-dev amd64 5.6.4-1 [323 kB]
 Get: 94 http://deb.debian.org/debian trixie/main amd64 libhts-dev amd64 1.21+ds-1 [1733 kB]
-Fetched 40.0 MB in 0s (90.7 MB/s)
+Fetched 40.0 MB in 1s (74.6 MB/s)
 Preconfiguring packages ...
 Selecting previously unselected package sensible-utils.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19800 files and directories currently installed.)
@@ -594,7 +626,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/ivar-1.4.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../ivar_1.4.4+dfsg-1_source.changes
+I: user script /srv/workspace/pbuilder/3936010/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for trixie
+I: user script /srv/workspace/pbuilder/3936010/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/ivar-1.4.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../ivar_1.4.4+dfsg-1_source.changes
 dpkg-buildpackage: info: source package ivar
 dpkg-buildpackage: info: source version 1.4.4+dfsg-1
 dpkg-buildpackage: info: source distribution unstable
@@ -690,39 +726,19 @@
 g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o ivar.o ivar.cpp
 g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp
 g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o alignment.o alignment.cpp
-g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp
-g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp
-g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp
-g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp
-g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp
-Using built-in specs.
-g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp
 Using built-in specs.
 COLLECT_GCC=g++
 OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
-g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp
 OFFLOAD_TARGET_DEFAULT=1
 Target: x86_64-linux-gnu
 Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3
 Thread model: posix
 Supported LTO compression algorithms: zlib zstd
 gcc version 14.2.0 (Debian 14.2.0-17) 
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -ICOLLECT_GCC=g++
-OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
- . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccgJtVLz.s
-OFFLOAD_TARGET_DEFAULT=1
-g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp
-Target: x86_64-linux-gnu
-Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-Using built-in specs.
-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3
-Thread model: posix
-Supported LTO compression algorithms: zlib zstd
-gcc version 14.2.0 (Debian 14.2.0-17) 
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ivar.cpp -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccZvoLMx.s
 Using built-in specs.
 Using built-in specs.
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ivar.cpp -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccBtakZi.s
 COLLECT_GCC=g++
 OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
 OFFLOAD_TARGET_DEFAULT=1
@@ -731,110 +747,83 @@
 Thread model: posix
 Supported LTO compression algorithms: zlib zstd
 gcc version 14.2.0 (Debian 14.2.0-17) 
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-COLLECT_GCC=g++
-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+COLLECT_GCC=g++
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
 OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
 OFFLOAD_TARGET_DEFAULT=1
 Target: x86_64-linux-gnu
-Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-v /usr/libexec/gcc/x86_64-linux-gnu/14/cc1pluserify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto -quiet --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list= -vm32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without- -Icuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-co .nfig=bootstrap-lto-lean --enable-link-serialization=3
- -IThread model: posix
- ..Supported LTO compression algorithms: zlib -imultiarch zstd x86_64-linux-gnu
- -D_GNU_SOURCEgcc version 14.2.0 (Debian 14.2.0-17) 
- -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -versionCOLLECT_GCC=g++
- -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/cc8Eldes.sOFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
-
-OFFLOAD_TARGET_DEFAULT=1
-Target: x86_64-linux-gnu
-Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3
-Thread model: posix
-Supported LTO compression algorithms: zlib zstd
-gcc version 14.2.0 (Debian 14.2.0-17) 
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccNPFf6R.s
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccLu0QA3.s
+Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without- /usr/libexec/gcc/x86_64-linux-gnu/14/cc1pluscuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-co -quietnfig=bootstrap-lto-lean --enable-link-serialization=3
+ -vThread model: posix
+ -ISupported LTO compression algorithms: zlib . zstd -I ..
+ -imultiarch x86_64-linux-gnugcc version 14.2.0 (Debian 14.2.0-17) 
+ -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccMr1CZ3.s
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccnyCzpM.s
+g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp
+g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp
+g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp
 Using built-in specs.
 Using built-in specs.
 Using built-in specs.
 COLLECT_GCC=g++
-COLLECT_GCC=g++
 OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
 OFFLOAD_TARGET_DEFAULT=1
 Target: x86_64-linux-gnu
-Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3
+Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
+	compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
+
+m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3
 Thread model: posix
 Supported LTO compression algorithms: zlib zstd
 gcc version 14.2.0 (Debian 14.2.0-17) 
+g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp
+COLLECT_GCC=g++
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
+ /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccuRQ5cD.s
 OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
 OFFLOAD_TARGET_DEFAULT=1
 Target: x86_64-linux-gnu
-Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enablCOLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
-Using built-in specs.
- /usr/libexec/gcc/x86_64-linux-gnu/14/cc1pluse-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-v -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp -quiet -dumpbase call_variants.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccyjNrwS.s
-erify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=autoCOLLECT_GCC=g++
-GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
-	compiled by GNU C version 14.2.0, OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
-OFFLOAD_TARGET_DEFAULT=1
-Target: x86_64-linux-gnu
-Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettexGMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
-
-t --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3
-Thread model: posix
-Supported LTO compression algorithms: zlib zstd
-gcc version 14.2.0 (Debian 14.2.0-17) 
-GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
- --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3
+Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3
 Thread model: posix
 Supported LTO compression algorithms: zlib zstd
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
 gcc version 14.2.0 (Debian 14.2.0-17) 
- /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCEignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
- -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 remove_reads_from_amplicon.cpp -quietignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
- -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mtune=genericignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed/x86_64-linux-gnu"
- -march=x86-64 -gignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed"
- -g -O2 -Wdate-time -Wformat=1ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/../../../../x86_64-linux-gnu/include"
- -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection#include "..." search starts here:
-#include <...> search starts here:
- -fcf-protection=full .
- -fasynchronous-unwind-tables -o ..
- /tmp/cclw8laz.s /usr/include/c++/14
- /usr/include/x86_64-linux-gnu/c++/14
-
- /usr/include/c++/14/backward
- /usr/lib/gcc/x86_64-linux-gnu/14/include
- /usr/local/include
 COLLECT_GCC=g++
- /usr/include/x86_64-linux-gnu
- /usr/include
-End of search list.
 OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
 OFFLOAD_TARGET_DEFAULT=1
 Target: x86_64-linux-gnu
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccwPU58r.s
 Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3
 Thread model: posix
 Supported LTO compression algorithms: zlib zstd
 gcc version 14.2.0 (Debian 14.2.0-17) 
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-mapCOLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 primer_bed.cpp -quiet -dumpbase primer_bed.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccenl1nX.s
-=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -IGNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
+ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
+GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
+	compiled by GNU C version 14.2.0, GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
 	compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
 
-GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
- . -IGNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
-	compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
+GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
 
 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
-ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
+GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 remove_reads_from_amplicon.cpp -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccMFlveI.s
 ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed/x86_64-linux-gnu"
+ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
+ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed"
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/../../../../x86_64-linux-gnu/include"
+ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
+ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed/x86_64-linux-gnu"
 #include "..." search starts here:
+ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed"
 #include <...> search starts here:
  .
  ..
  /usr/include/c++/14
+ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/../../../../x86_64-linux-gnu/include"
  /usr/include/x86_64-linux-gnu/c++/14
  /usr/include/c++/14/backward
  /usr/lib/gcc/x86_64-linux-gnu/14/include
@@ -842,43 +831,22 @@
  /usr/include/x86_64-linux-gnu
  /usr/include
 End of search list.
- ..GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
-	compiled by GNU C version 14.2.0,  -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextraignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
-GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
-	compiled by GNU C version 14.2.0, ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
-GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
-
-GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
-
- -WerrorGGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
-GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
-Using built-in specs.
- -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccfUvGr2.s
-ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed/x86_64-linux-gnu"
-ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed"
-ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/../../../../x86_64-linux-gnu/include"
-ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
-ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
-ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed/x86_64-linux-gnu"
-ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
-ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed"
-ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/../../../../x86_64-linux-gnu/include"
-ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
-ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed/x86_64-linux-gnu"
 #include "..." search starts here:
 #include <...> search starts here:
-ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed"
  .
  ..
  /usr/include/c++/14
  /usr/include/x86_64-linux-gnu/c++/14
-ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/../../../../x86_64-linux-gnu/include"
  /usr/include/c++/14/backward
  /usr/lib/gcc/x86_64-linux-gnu/14/include
  /usr/local/include
  /usr/include/x86_64-linux-gnu
  /usr/include
 End of search list.
+ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
+ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed/x86_64-linux-gnu"
+ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed"
+ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/../../../../x86_64-linux-gnu/include"
 #include "..." search starts here:
 #include <...> search starts here:
  .
@@ -891,7 +859,8 @@
  /usr/include/x86_64-linux-gnu
  /usr/include
 End of search list.
-#include "..." search starts here:
+Using built-in specs.
+g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp
 COLLECT_GCC=g++
 OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
 OFFLOAD_TARGET_DEFAULT=1
@@ -900,24 +869,71 @@
 Thread model: posix
 Supported LTO compression algorithms: zlib zstd
 gcc version 14.2.0 (Debian 14.2.0-17) 
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp -quietGNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
+	compiled by GNU C version 14.2.0,  -dumpbaseGMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
+
+ call_variants.cppGGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
+ -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccwR48iW.s
+GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
+	compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
+
+GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
+ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
+ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
+ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed/x86_64-linux-gnu"
+ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed"
+ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/../../../../x86_64-linux-gnu/include"
+#include "..." search starts here:
 #include <...> search starts here:
  .
  ..
  /usr/include/c++/14
  /usr/include/x86_64-linux-gnu/c++/14
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map /usr/include/c++/14/backward
+ /usr/include/c++/14/backward
  /usr/lib/gcc/x86_64-linux-gnu/14/include
  /usr/local/include
  /usr/include/x86_64-linux-gnu
  /usr/include
 End of search list.
-g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp
-Compiler executable checksum: b86fd017GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
-	compiled by GNU C version 14.2.0, 25f97898378e69b0925223fb
-GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
+ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
+ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
+ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed/x86_64-linux-gnu"
+ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed"
+ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/../../../../x86_64-linux-gnu/include"
+#include "..." search starts here:
+#include <...> search starts here:
+ .
+ ..
+ /usr/include/c++/14
+ /usr/include/x86_64-linux-gnu/c++/14
+ /usr/include/c++/14/backward
+ /usr/lib/gcc/x86_64-linux-gnu/14/include
+ /usr/local/include
+ /usr/include/x86_64-linux-gnu
+ /usr/include
+End of search list.
+Compiler executable checksum: b86fd01725f97898378e69b0925223fb
+Compiler executable checksum: b86fd01725f97898378e69b0925223fb
+Compiler executable checksum: b86fd01725f97898378e69b0925223fb
+Compiler executable checksum: b86fd01725f97898378e69b0925223fb
+Compiler executable checksum: b86fd01725f97898378e69b0925223fb
+g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp
+Using built-in specs.
+COLLECT_GCC=g++
+OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
+OFFLOAD_TARGET_DEFAULT=1
+Target: x86_64-linux-gnu
+Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3
+Thread model: posix
+Supported LTO compression algorithms: zlib zstd
+gcc version 14.2.0 (Debian 14.2.0-17) 
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 primer_bed.cpp -quiet -dumpbase primer_bed.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -WerrorGNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
+	compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
 
 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
-ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
+ -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protectionignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
 ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed/x86_64-linux-gnu"
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed"
@@ -934,11 +950,12 @@
  /usr/include/x86_64-linux-gnu
  /usr/include
 End of search list.
+ -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccKkX2Z3.s
+Compiler executable checksum: b86fd01725f97898378e69b0925223fb
 GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
 	compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
 
 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
-Using built-in specs.
 ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
 ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed/x86_64-linux-gnu"
@@ -956,8 +973,10 @@
  /usr/include/x86_64-linux-gnu
  /usr/include
 End of search list.
-GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
-	compiled by GNU C version 14.2.0, COLLECT_GCC=g++
+Compiler executable checksum: b86fd01725f97898378e69b0925223fb
+Using built-in specs.
+g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp
+COLLECT_GCC=g++
 OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
 OFFLOAD_TARGET_DEFAULT=1
 Target: x86_64-linux-gnu
@@ -965,26 +984,20 @@
 Thread model: posix
 Supported LTO compression algorithms: zlib zstd
 gcc version 14.2.0 (Debian 14.2.0-17) 
-Compiler executable checksum: b86fd01725f97898378e69b0925223fb
-=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/cc82lwIb.s
-GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccEHHZaY.s
+g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp
+Using built-in specs.
+COLLECT_GCC=g++
+GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
+	compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
 
 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
-Using built-in specs.
 ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
 ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed/x86_64-linux-gnu"
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed"
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/../../../../x86_64-linux-gnu/include"
-COLLECT_GCC=g++
-OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
-OFFLOAD_TARGET_DEFAULT=1
-Target: x86_64-linux-gnu
-Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3
-Thread model: posix
-Supported LTO compression algorithms: zlib zstd
-gcc version 14.2.0 (Debian 14.2.0-17) 
 #include "..." search starts here:
 #include <...> search starts here:
  .
@@ -997,22 +1010,27 @@
  /usr/include/x86_64-linux-gnu
  /usr/include
 End of search list.
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccwzaktg.s
+Compiler executable checksum: OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
+OFFLOAD_TARGET_DEFAULT=1
+Target: x86_64-linux-gnu
+Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3
+Thread model: posix
+Supported LTO compression algorithms: zlib zstd
+gcc version 14.2.0 (Debian 14.2.0-17) 
+b86fd017COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccFpBMJN.s
+25f97898378e69b0925223fb
 GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
 	compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
 
 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
-Compiler executable checksum: b86fd01725f97898378e69b0925223fbCompiler executable checksum: 
-b86fd01725f97898378e69b0925223fb
 ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
 ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed/x86_64-linux-gnu"
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed"
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/../../../../x86_64-linux-gnu/include"
 #include "..." search starts here:
-Compiler executable checksum: #include <...> search starts here:
-b86fd01725f97898378e69b0925223fb
+#include <...> search starts here:
  .
  ..
  /usr/include/c++/14
@@ -1023,14 +1041,25 @@
  /usr/include/x86_64-linux-gnu
  /usr/include
 End of search list.
-Compiler executable checksum: b86fd01725f97898378e69b092GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
-	compiled by GNU C version 14.2.0, 52GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
+Using built-in specs.
+COLLECT_GCC=g++
+OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
+OFFLOAD_TARGET_DEFAULT=1
+Target: x86_64-linux-gnu
+Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3
+Thread model: posix
+Supported LTO compression algorithms: zlib zstd
+gcc version 14.2.0 (Debian 14.2.0-17) 
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccxBaj94.s
+g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp
+Compiler executable checksum: b86fd01725f97898378e69b0925223fb
+GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
+	compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
 
-23GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
-fb
+GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
 ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
 ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
-Compiler executable checksum: b86fd01725f97898378e69b0925223fb
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed/x86_64-linux-gnu"
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed"
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/../../../../x86_64-linux-gnu/include"
@@ -1046,12 +1075,7 @@
  /usr/include/x86_64-linux-gnu
  /usr/include
 End of search list.
-Compiler executable checksum: b86fd01725f97898378e69b0925223fb
-Compiler executable checksum: b86fd01725f97898378e69b0925223fb
-Compiler executable checksum: b86fd01725f97898378e69b0925223COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 parse_gff.cpp -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/cc6zhwrg.s
-fb
-GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
+Compiler executable checksum: GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
 	compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
 
 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
@@ -1072,6 +1096,19 @@
  /usr/include/x86_64-linux-gnu
  /usr/include
 End of search list.
+b86fd01725f97898378e69b0925223fb
+Compiler executable checksum: Using built-in specs.
+COLLECT_GCC=g++
+OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
+OFFLOAD_TARGET_DEFAULT=1
+Target: x86_64-linux-gnu
+Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3
+Thread model: posix
+Supported LTO compression algorithms: zlib zstd
+gcc version 14.2.0 (Debian 14.2.0-17) 
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 parse_gff.cpp -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccO6w1ug.s
+b86fd01725f97898378e69b0925223fb
 GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
 	compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
 
@@ -1094,12 +1131,8 @@
  /usr/include
 End of search list.
 Compiler executable checksum: b86fd01725f97898378e69b0925223fb
-Compiler executable checksum: b86fd01725f97898378e69b0925223fb
 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- as -v -I . -I .. --gdwarf-5 --64 -o remove_reads_from_amplicon.o /tmp/cclw8laz.s
-GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- as -v -I . -I .. --gdwarf-5 --64 -o alignment.o /tmp/cc8Eldes.s
+ as -v -I . -I .. --gdwarf-5 --64 -o remove_reads_from_amplicon.o /tmp/ccMFlveI.s
 GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
 LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
@@ -1115,18 +1148,14 @@
 Supported LTO compression algorithms: zlib zstd
 gcc version 14.2.0 (Debian 14.2.0-17) 
 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccaz7bM9.s
+ /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccReS2cG.s
 GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
-	compiled by GNU C version 14.2.0, COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usGMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
+	compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
 
 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
 ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/14"
-r/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
-LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic'ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
- '-march=x86-64' '-dumpdir' 'alignment.'
+ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed/x86_64-linux-gnu"
-g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/include-fixed"
 ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/14/../../../../x86_64-linux-gnu/include"
 #include "..." search starts here:
@@ -1141,6 +1170,20 @@
  /usr/include/x86_64-linux-gnu
  /usr/include
 End of search list.
+Compiler executable checksum: b86fd01725f97898378e69b0925223fb
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ as -v -I . -I .. --gdwarf-5 --64 -o alignment.o /tmp/ccnyCzpM.s
+GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ as -v -I . -I .. --gdwarf-5 --64 -o get_masked_amplicons.o /tmp/ccFpBMJN.s
+GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
+COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
+LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'alignment.'
+g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2  -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -v -g -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp
+COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
+LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'get_masked_amplicons.'
 Using built-in specs.
 COLLECT_GCC=g++
 OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
@@ -1150,9 +1193,8 @@
 Thread model: posix
 Supported LTO compression algorithms: zlib zstd
 gcc version 14.2.0 (Debian 14.2.0-17) 
-Compiler executable checksum: b86fd01725f97898378e69b0925223fb
 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccTTEKSD.s
+ /usr/libexec/gcc/x86_64-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch x86_64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mtune=generic -march=x86-64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fcf-protection=full -fasynchronous-unwind-tables -o /tmp/ccASUoTi.s
 GNU C++17 (Debian 14.2.0-17) version 14.2.0 (x86_64-linux-gnu)
 	compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP
 
@@ -1175,74 +1217,68 @@
  /usr/include
 End of search list.
 Compiler executable checksum: b86fd01725f97898378e69b0925223fb
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- as -v -I . -I .. --gdwarf-5 --64 -o get_masked_amplicons.o /tmp/ccfUvGr2.s
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ as -v -I . -I .. --gdwarf-5 --64 -o get_common_variants.o /tmp/ccxBaj94.s
 GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
 LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'get_masked_amplicons.'
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- as -v -I . -I .. --gdwarf-5 --64 -o get_common_variants.o /tmp/cc82lwIb.s
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'get_common_variants.'
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ as -v -I . -I .. --gdwarf-5 --64 -o suffix_tree.o /tmp/ccuRQ5cD.s
 GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- as -v -I . -I .. --gdwarf-5 --64 -o allele_functions.o /tmp/ccwzaktg.s
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ as -v -I . -I .. --gdwarf-5 --64 -o ivar.o /tmp/ccZvoLMx.s
 GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
 LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'get_common_variants.'
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- as -v -I . -I .. --gdwarf-5 --64 -o interval_tree.o /tmp/ccTTEKSD.s
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'suffix_tree.'
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ as -v -I . -I .. --gdwarf-5 --64 -o allele_functions.o /tmp/ccEHHZaY.s
 GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
 LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'allele_functions.'
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'ivar.'
 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
 LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'interval_tree.'
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- as -v -I . -I .. --gdwarf-5 --64 -o call_variants.o /tmp/ccyjNrwS.s
-GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- as -v -I . -I .. --gdwarf-5 --64 -o call_consensus_pileup.o /tmp/ccgJtVLz.s
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'allele_functions.'
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ as -v -I . -I .. --gdwarf-5 --64 -o interval_tree.o /tmp/ccASUoTi.s
 GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
 LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'call_variants.'
-COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
-LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'call_consensus_pileup.'
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'interval_tree.'
 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- as -v -I . -I .. --gdwarf-5 --64 -o primer_bed.o /tmp/ccenl1nX.s
-GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- as -v -I . -I .. --gdwarf-5 --64 -o suffix_tree.o /tmp/ccLu0QA3.s
+ as -v -I . -I .. --gdwarf-5 --64 -o primer_bed.o /tmp/ccKkX2Z3.s
 GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
 LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'primer_bed.'
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- as -v -I . -I .. --gdwarf-5 --64 -o ivar.o /tmp/ccBtakZi.s
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ as -v -I . -I .. --gdwarf-5 --64 -o ref_seq.o /tmp/ccReS2cG.s
 GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
 LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'suffix_tree.'
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'ref_seq.'
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ as -v -I . -I .. --gdwarf-5 --64 -o call_variants.o /tmp/ccwR48iW.s
+GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
 LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'ivar.'
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- as -v -I . -I .. --gdwarf-5 --64 -o trim_primer_quality.o /tmp/ccNPFf6R.s
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'call_variants.'
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ as -v -I . -I .. --gdwarf-5 --64 -o call_consensus_pileup.o /tmp/ccMr1CZ3.s
 GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
 LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'trim_primer_quality.'
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- as -v -I . -I .. --gdwarf-5 --64 -o ref_seq.o /tmp/ccaz7bM9.s
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'call_consensus_pileup.'
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
+ as -v -I . -I .. --gdwarf-5 --64 -o trim_primer_quality.o /tmp/ccwPU58r.s
 GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
 LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
-COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'ref_seq.'
+COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'trim_primer_quality.'
 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
- as -v -I . -I .. --gdwarf-5 --64 -o parse_gff.o /tmp/cc6zhwrg.s
+ as -v -I . -I .. --gdwarf-5 --64 -o parse_gff.o /tmp/ccO6w1ug.s
 GNU assembler version 2.44 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44
 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
 LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
@@ -1261,7 +1297,7 @@
 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
 LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
 COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'ivar.'
- /usr/libexec/gcc/x86_64-linux-gnu/14/collect2 -plugin /usr/libexec/gcc/x86_64-linux-gnu/14/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/x86_64-linux-gnu/14/lto-wrapper -plugin-opt=-fresolution=/tmp/ccisuhBG.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -o ivar /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o
+ /usr/libexec/gcc/x86_64-linux-gnu/14/collect2 -plugin /usr/libexec/gcc/x86_64-linux-gnu/14/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/x86_64-linux-gnu/14/lto-wrapper -plugin-opt=-fresolution=/tmp/cc0WM41Q.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -o ivar /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o
 COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'ivar.'
 make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/src'
 Making all in tests
@@ -1402,7 +1438,7 @@
 COMPILER_PATH=/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/14/:/usr/libexec/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/
 LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/14/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/14/../../../:/lib/:/usr/lib/
 COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'ivar.'
- /usr/libexec/gcc/x86_64-linux-gnu/14/collect2 -plugin /usr/libexec/gcc/x86_64-linux-gnu/14/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/x86_64-linux-gnu/14/lto-wrapper -plugin-opt=-fresolution=/tmp/ccGfATTl.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -o ivar /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o
+ /usr/libexec/gcc/x86_64-linux-gnu/14/collect2 -plugin /usr/libexec/gcc/x86_64-linux-gnu/14/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/x86_64-linux-gnu/14/lto-wrapper -plugin-opt=-fresolution=/tmp/ccyFFxoC.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -o ivar /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o
 COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-fcf-protection=full' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mtune=generic' '-march=x86-64' '-dumpdir' 'ivar.'
 make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src'
 make[3]: Nothing to be done for 'install-data-am'.
@@ -1438,7 +1474,7 @@
 if [ -x /build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed ] \
 ; then chmod -v -x /build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed \
 ; fi
-mode of '/build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--)
+mode of '/build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed' changed from 0775 (rwxrwxr-x) to 0664 (rw-rw-r--)
 make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg'
    dh_fixperms
    dh_missing
@@ -1450,8 +1486,8 @@
    dh_gencontrol
    dh_md5sums
    dh_builddeb
-dpkg-deb: building package 'ivar' in '../ivar_1.4.4+dfsg-1_amd64.deb'.
 dpkg-deb: building package 'ivar-dbgsym' in '../ivar-dbgsym_1.4.4+dfsg-1_amd64.deb'.
+dpkg-deb: building package 'ivar' in '../ivar_1.4.4+dfsg-1_amd64.deb'.
 dpkg-deb: building package 'ivar-doc' in '../ivar-doc_1.4.4+dfsg-1_all.deb'.
  dpkg-genbuildinfo --build=binary -O../ivar_1.4.4+dfsg-1_amd64.buildinfo
  dpkg-genchanges --build=binary -O../ivar_1.4.4+dfsg-1_amd64.changes
@@ -1460,12 +1496,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: including full source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/3936010/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/3936010/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/1738098 and its subdirectories
-I: Current time: Tue Apr  7 16:43:55 -12 2026
-I: pbuilder-time-stamp: 1775623435
+I: removing directory /srv/workspace/pbuilder/3936010 and its subdirectories
+I: Current time: Thu Mar  6 12:23:14 +14 2025
+I: pbuilder-time-stamp: 1741213394