Diff of the two buildlogs: -- --- b1/build.log 2024-05-13 09:02:57.551309339 +0000 +++ b2/build.log 2024-05-13 09:17:45.037503580 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jun 15 03:21:25 -12 2025 -I: pbuilder-time-stamp: 1750000885 +I: Current time: Mon May 13 23:03:02 +14 2024 +I: pbuilder-time-stamp: 1715590982 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -36,52 +36,84 @@ dpkg-source: info: applying omit_blat_tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/335579/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3905555/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 13 09:03 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3905555/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3905555/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='ce819a6bcd1e445dacf468cf76a0aa04' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='335579' - PS1='# ' - PS2='> ' + INVOCATION_ID=63a49071a1c8474985bcdfce5c9c93c8 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3905555 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KEGQ7C9H/pbuilderrc_7Jby --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KEGQ7C9H/b1 --logfile b1/build.log igv_2.17.3+dfsg-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KEGQ7C9H/pbuilderrc_2QHl --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KEGQ7C9H/b2 --logfile b2/build.log igv_2.17.3+dfsg-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 14 18:01 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/335579/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 11 11:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3905555/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -659,7 +691,7 @@ Get: 480 http://deb.debian.org/debian trixie/main amd64 libprotobuf-java all 3.21.12-8.2 [1260 kB] Get: 481 http://deb.debian.org/debian trixie/main amd64 libswing-layout-java all 1.0.4-4.1 [44.4 kB] Get: 482 http://deb.debian.org/debian trixie/main amd64 openjfx amd64 11.0.11+1-3.2 [6556 B] -Fetched 443 MB in 9s (47.6 MB/s) +Fetched 443 MB in 13s (32.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) @@ -2238,8 +2270,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Jun 15 15:23:59 UTC 2025. -Universal Time is now: Sun Jun 15 15:23:59 UTC 2025. +Local time is now: Mon May 13 09:09:51 UTC 2024. +Universal Time is now: Mon May 13 09:09:51 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -2836,7 +2868,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/igv-2.17.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../igv_2.17.3+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/3905555/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3905555/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/igv-2.17.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../igv_2.17.3+dfsg-1_source.changes dpkg-buildpackage: info: source package igv dpkg-buildpackage: info: source version 2.17.3+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -2877,81 +2913,81 @@ mkdir ../../src/main/resources-icons && \ mv *.png ../../src/main/resources-icons/ -** (process:383660): WARNING **: 03:24:26.575: Unable to create profile directory (Permission denied) (13) -** Message: 03:24:26.585: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 03:24:26.585: Inkscape will run with default settings, and new settings will not be saved. +** (process:3993450): WARNING **: 23:11:53.623: Unable to create profile directory (Permission denied) (13) +** Message: 23:11:53.654: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 23:11:53.654: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:383660): WARNING **: 03:24:26.796: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:3993450): WARNING **: 23:11:54.287: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:383660): WARNING **: 03:24:26.796: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:3993450): WARNING **: 23:11:54.288: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:383660): Gtk-CRITICAL **: 03:24:26.847: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:3993450): Gtk-CRITICAL **: 23:11:54.433: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:383660): WARNING **: 03:24:26.847: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:3993450): WARNING **: 23:11:54.433: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:383753): WARNING **: 03:24:27.039: Unable to create profile directory (Permission denied) (13) -** Message: 03:24:27.055: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 03:24:27.055: Inkscape will run with default settings, and new settings will not be saved. +** (process:3993620): WARNING **: 23:11:54.748: Unable to create profile directory (Permission denied) (13) +** Message: 23:11:54.781: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 23:11:54.786: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:383753): WARNING **: 03:24:27.306: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:3993620): WARNING **: 23:11:55.706: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:383753): WARNING **: 03:24:27.306: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:3993620): WARNING **: 23:11:55.710: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:383753): Gtk-CRITICAL **: 03:24:27.368: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:3993620): Gtk-CRITICAL **: 23:11:55.882: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:383753): WARNING **: 03:24:27.368: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:3993620): WARNING **: 23:11:55.886: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:383858): WARNING **: 03:24:27.537: Unable to create profile directory (Permission denied) (13) -** Message: 03:24:27.553: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 03:24:27.553: Inkscape will run with default settings, and new settings will not be saved. +** (process:3993841): WARNING **: 23:11:56.249: Unable to create profile directory (Permission denied) (13) +** Message: 23:11:56.307: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 23:11:56.307: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:383858): WARNING **: 03:24:27.816: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:3993841): WARNING **: 23:11:56.828: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:383858): WARNING **: 03:24:27.816: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:3993841): WARNING **: 23:11:56.834: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:383858): Gtk-CRITICAL **: 03:24:27.879: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:3993841): Gtk-CRITICAL **: 23:11:57.074: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:383858): WARNING **: 03:24:27.879: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:3993841): WARNING **: 23:11:57.091: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:383956): WARNING **: 03:24:28.080: Unable to create profile directory (Permission denied) (13) -** Message: 03:24:28.094: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 03:24:28.094: Inkscape will run with default settings, and new settings will not be saved. +** (process:3994109): WARNING **: 23:11:57.422: Unable to create profile directory (Permission denied) (13) +** Message: 23:11:57.463: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 23:11:57.463: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:383956): WARNING **: 03:24:28.362: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:3994109): WARNING **: 23:11:58.125: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:383956): WARNING **: 03:24:28.362: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:3994109): WARNING **: 23:11:58.131: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:383956): Gtk-CRITICAL **: 03:24:28.425: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:3994109): Gtk-CRITICAL **: 23:11:58.295: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:383956): WARNING **: 03:24:28.425: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:3994109): WARNING **: 23:11:58.296: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:384077): WARNING **: 03:24:28.591: Unable to create profile directory (Permission denied) (13) -** Message: 03:24:28.605: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 03:24:28.606: Inkscape will run with default settings, and new settings will not be saved. +** (process:3994334): WARNING **: 23:11:58.835: Unable to create profile directory (Permission denied) (13) +** Message: 23:11:58.874: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 23:11:58.882: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:384077): WARNING **: 03:24:28.872: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:3994334): WARNING **: 23:11:59.354: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:384077): WARNING **: 03:24:28.872: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:3994334): WARNING **: 23:11:59.355: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:384077): Gtk-CRITICAL **: 03:24:28.934: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:3994334): Gtk-CRITICAL **: 23:11:59.424: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:384077): WARNING **: 03:24:28.934: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:3994334): WARNING **: 23:11:59.424: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. make[1]: Leaving directory '/build/reproducible-path/igv-2.17.3+dfsg' jh_linkjars -O--buildsystem=gradle dh_auto_build -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=igv -Dfile.encoding=UTF-8 --parallel --max-workers=42 jar + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=igv -Dfile.encoding=UTF-8 --parallel --max-workers=20 jar openjdk version "17.0.11" 2024-04-16 OpenJDK Runtime Environment (build 17.0.11+9-Debian-1) OpenJDK 64-Bit Server VM (build 17.0.11+9-Debian-1, mixed mode, sharing) @@ -2959,18 +2995,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 2.328 secs. -The client will now receive all logging from the daemon (pid: 384543). The daemon log file: /build/reproducible-path/igv-2.17.3+dfsg/.gradle/daemon/4.4.1/daemon-384543.out.log +An attempt to start the daemon took 6.636 secs. +The client will now receive all logging from the daemon (pid: 3995543). The daemon log file: /build/reproducible-path/igv-2.17.3+dfsg/.gradle/daemon/4.4.1/daemon-3995543.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 42 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@490d0186 -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@490d0186 -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@6f78c3de +Using 20 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@720cb12 +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@720cb12 +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@25ca1f24 Starting Build Compiling initialization script '/build/reproducible-path/igv-2.17.3+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@747f8129 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@47d5e569 Compiling initialization script '/build/reproducible-path/igv-2.17.3+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/igv-2.17.3+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/igv-2.17.3+dfsg/settings.gradle' using BuildScriptTransformer. @@ -2983,7 +3019,7 @@ Evaluating root project 'igv' using build file '/build/reproducible-path/igv-2.17.3+dfsg/build.gradle'. Compiling build file '/build/reproducible-path/igv-2.17.3+dfsg/build.gradle' using SubsetScriptTransformer. Compiling build file '/build/reproducible-path/igv-2.17.3+dfsg/build.gradle' using BuildScriptTransformer. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@1a808d6a +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@604853cd Loading the Maven rules... Replacing com.google.code.gson:gson:jar:2.8.9 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian @@ -3027,14 +3063,14 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@6035240a +Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@6cea639b Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@6f78c3de -Creating new cache for taskHistory, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@64cf0703 -Creating new cache for outputFiles, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@38c46a59 +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@25ca1f24 +Creating new cache for taskHistory, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@46127957 +Creating new cache for outputFiles, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@321d2c51 :compileJava (Thread[Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.014 secs. +Putting task artifact state for task ':compileJava' into context took 0.021 secs. file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found Malformed jar [htsjdk-debian.jar] found on classpath. Gradle 5.0 will no longer allow malformed jars on a classpath. at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder$JarHasher.hashMalformedZip(AbstractClasspathSnapshotBuilder.java:120) @@ -3085,7 +3121,7 @@ at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:840) file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found -Up-to-date check for task ':compileJava' took 3.947 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 19.272 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found @@ -3095,38 +3131,38 @@ Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:compileJava (Thread[Task worker for ':',5,main]) completed. Took 28.083 secs. +:compileJava (Thread[Task worker for ':',5,main]) completed. Took 1 mins 25.028 secs. :processResources (Thread[Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Up-to-date check for task ':processResources' took 0.074 secs. It is not up-to-date because: +Up-to-date check for task ':processResources' took 0.299 secs. It is not up-to-date because: No history is available. -:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.256 secs. +:processResources (Thread[Task worker for ':',5,main]) completed. Took 2.727 secs. :classes (Thread[Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. +:classes (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. :debianMavenPom (Thread[Task worker for ':',5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':debianMavenPom' took 0.003 secs. It is not up-to-date because: +Up-to-date check for task ':debianMavenPom' took 0.009 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/igv-2.17.3+dfsg/build/debian/igv.pom -:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.138 secs. +:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.694 secs. :jar (Thread[Task worker for ':',5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.028 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.192 secs. It is not up-to-date because: No history is available. -:jar (Thread[Task worker for ':',5,main]) completed. Took 0.811 secs. +:jar (Thread[Task worker for ':',5,main]) completed. Took 2.965 secs. -BUILD SUCCESSFUL in 44s +BUILD SUCCESSFUL in 2m 13s 4 actionable tasks: 4 executed jh_build -O--buildsystem=gradle dh_auto_test -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=igv -Dfile.encoding=UTF-8 --parallel --max-workers=42 test + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=igv -Dfile.encoding=UTF-8 --parallel --max-workers=20 test openjdk version "17.0.11" 2024-04-16 OpenJDK Runtime Environment (build 17.0.11+9-Debian-1) OpenJDK 64-Bit Server VM (build 17.0.11+9-Debian-1, mixed mode, sharing) @@ -3134,17 +3170,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 2.491 secs. -The client will now receive all logging from the daemon (pid: 413300). The daemon log file: /build/reproducible-path/igv-2.17.3+dfsg/.gradle/daemon/4.4.1/daemon-413300.out.log +An attempt to start the daemon took 5.436 secs. +The client will now receive all logging from the daemon (pid: 4010321). The daemon log file: /build/reproducible-path/igv-2.17.3+dfsg/.gradle/daemon/4.4.1/daemon-4010321.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 42 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@78f8e0ea -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@78f8e0ea -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1611a76b +Using 20 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@5a58105b +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@5a58105b +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1c0f8b9b Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@598a643b +Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@9fc5a80 Settings evaluated using settings file '/build/reproducible-path/igv-2.17.3+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/igv-2.17.3+dfsg/build.gradle'. Included projects: [root project 'igv'] @@ -3152,7 +3188,7 @@ Adding Debian repository to project 'igv' Parallel execution is an incubating feature. Evaluating root project 'igv' using build file '/build/reproducible-path/igv-2.17.3+dfsg/build.gradle'. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@53410ad9 +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@19990408 Loading the Maven rules... Replacing com.google.code.gson:gson:jar:2.8.9 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian @@ -3196,34 +3232,34 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@41156f71 +Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@18a285f3 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1611a76b -Creating new cache for taskHistory, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@15df1503 -Creating new cache for outputFiles, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@b2d8d9c -:compileJava (Thread[Task worker for ':' Thread 2,5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1c0f8b9b +Creating new cache for taskHistory, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@60e37b57 +Creating new cache for outputFiles, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@c3199d +:compileJava (Thread[Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.007 secs. +Putting task artifact state for task ':compileJava' into context took 0.025 secs. file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found -Skipping task ':compileJava' as it is up-to-date (took 0.804 secs). +Skipping task ':compileJava' as it is up-to-date (took 4.127 secs). :compileJava UP-TO-DATE -:compileJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.834 secs. -:processResources (Thread[Task worker for ':' Thread 2,5,main]) started. +:compileJava (Thread[Task worker for ':',5,main]) completed. Took 4.314 secs. +:processResources (Thread[Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Skipping task ':processResources' as it is up-to-date (took 0.118 secs). +Skipping task ':processResources' as it is up-to-date (took 0.205 secs). :processResources UP-TO-DATE -:processResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.134 secs. -:classes (Thread[Task worker for ':' Thread 2,5,main]) started. +:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.238 secs. +:classes (Thread[Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE -:classes (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.006 secs. -:compileTestJava (Thread[Task worker for ':' Thread 2,5,main]) started. +:classes (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. +:compileTestJava (Thread[Task worker for ':',5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. -Malformed class file [SupplementaryAlignment$SupplementaryNeighbors.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [FrameManager$ChangeEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3272,7 +3308,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:840) -Malformed class file [SortOption.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [OAuthProvider$AuthStateEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3321,7 +3357,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:840) -Malformed class file [InsertionSelectionEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [SortOption.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3370,7 +3406,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:840) -Malformed class file [AlignmentTrackEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [InsertionSelectionEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3419,7 +3455,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:840) -Malformed class file [GenomeChangeEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [SupplementaryAlignment$SupplementaryNeighbors.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3517,7 +3553,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:840) -Malformed class file [FrameManager$ChangeEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [AlignmentTrackEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3566,7 +3602,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:840) -Malformed class file [OAuthProvider$AuthStateEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [GenomeChangeEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3621,7 +3657,7 @@ Passing through org.hamcrest:hamcrest:jar:debian file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found -Up-to-date check for task ':compileTestJava' took 1.702 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 12.664 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found @@ -3631,19 +3667,19 @@ Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:compileTestJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 5.047 secs. -:processTestResources (Thread[Task worker for ':' Thread 2,5,main]) started. +:compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 41.721 secs. +:processTestResources (Thread[Task worker for ':',5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/igv-2.17.3+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE -:processTestResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.005 secs. -:testClasses (Thread[Task worker for ':' Thread 2,5,main]) started. +:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.034 secs. +:testClasses (Thread[Task worker for ':',5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:test (Thread[Task worker for ':' Thread 2,5,main]) started. +:testClasses (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. +:test (Thread[Task worker for ':',5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Replacing org.junit.vintage:junit-vintage-engine:jar:5.8.2 -> org.junit.vintage:junit-vintage-engine:jar:debian @@ -3653,157 +3689,67 @@ Passing through org.opentest4j:opentest4j:jar:debian Passing through org.junit.platform:junit-platform-commons:jar:debian file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found -Up-to-date check for task ':test' took 0.576 secs. It is not up-to-date because: +Up-to-date check for task ':test' took 3.131 secs. It is not up-to-date because: No history is available. file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found -Starting process 'Gradle Test Executor 6'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath644064781260640910txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 6' -Starting process 'Gradle Test Executor 7'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath7832875839542026627txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 7' -Starting process 'Gradle Test Executor 4'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath15573950956240103906txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' Starting process 'Gradle Test Executor 8'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath140455773960304330txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 8' -Starting process 'Gradle Test Executor 14'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath18017985135652990620txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 14' -Starting process 'Gradle Test Executor 10'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath16008937005490392059txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 10' -Starting process 'Gradle Test Executor 5'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath13558879553055059290txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 5' -Starting process 'Gradle Test Executor 11'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath10812097322598139595txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 11' -Starting process 'Gradle Test Executor 13'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath2796988108307847480txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 13' -Starting process 'Gradle Test Executor 9'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath4251553630056017013txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 9' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath4368748194397618127txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 8' Starting process 'Gradle Test Executor 3'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath1416484111288183319txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' -Starting process 'Gradle Test Executor 12'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath12535749315063284501txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 12' -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath14954961476596808578txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath15127501474312451972txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath1197976249357464937txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' -Successfully started process 'Gradle Test Executor 10' -Successfully started process 'Gradle Test Executor 13' -Successfully started process 'Gradle Test Executor 1' -Successfully started process 'Gradle Test Executor 2' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath3393378453510173773txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' +Starting process 'Gradle Test Executor 6'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath11941116057808314744txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 6' +Starting process 'Gradle Test Executor 9'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath676567085306650171txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 9' +Starting process 'Gradle Test Executor 5'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath2315893794737042287txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 5' +Starting process 'Gradle Test Executor 10'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath4053240997533932497txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 10' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath685115756286940719txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 7'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath8073554895533865559txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 7' +Starting process 'Gradle Test Executor 4'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath15606961650602351942txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' +Successfully started process 'Gradle Test Executor 8' Successfully started process 'Gradle Test Executor 7' -Starting process 'Gradle Test Executor 16'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath2802936099083468150txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 16' -Starting process 'Gradle Test Executor 15'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath4062028630123813578txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 15' -Starting process 'Gradle Test Executor 21'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath3313399592416635005txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 21' -Starting process 'Gradle Test Executor 18'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath16166026837100710316txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 18' -Starting process 'Gradle Test Executor 20'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath14672869906457354663txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 20' -Successfully started process 'Gradle Test Executor 4' -Starting process 'Gradle Test Executor 17'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath16994817002360435340txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 17' -Starting process 'Gradle Test Executor 19'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath9331721943883585214txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 19' -Successfully started process 'Gradle Test Executor 20' -Successfully started process 'Gradle Test Executor 14' -Successfully started process 'Gradle Test Executor 6' -Successfully started process 'Gradle Test Executor 12' Successfully started process 'Gradle Test Executor 5' -Successfully started process 'Gradle Test Executor 3' +Successfully started process 'Gradle Test Executor 1' +Successfully started process 'Gradle Test Executor 10' Successfully started process 'Gradle Test Executor 9' -Successfully started process 'Gradle Test Executor 11' -Successfully started process 'Gradle Test Executor 8' -Successfully started process 'Gradle Test Executor 21' -Successfully started process 'Gradle Test Executor 19' -Successfully started process 'Gradle Test Executor 18' -Successfully started process 'Gradle Test Executor 17' -Successfully started process 'Gradle Test Executor 15' -Successfully started process 'Gradle Test Executor 16' -Gradle Test Executor 3 started executing tests. -Gradle Test Executor 10 started executing tests. -Gradle Test Executor 4 started executing tests. -Gradle Test Executor 21 started executing tests. -Gradle Test Executor 2 started executing tests. -Gradle Test Executor 17 started executing tests. -Gradle Test Executor 7 started executing tests. -Gradle Test Executor 18 started executing tests. -Gradle Test Executor 20 started executing tests. -Gradle Test Executor 14 started executing tests. -Gradle Test Executor 5 started executing tests. -Gradle Test Executor 9 started executing tests. -Gradle Test Executor 1 started executing tests. -Gradle Test Executor 19 started executing tests. -Gradle Test Executor 15 started executing tests. -Gradle Test Executor 13 started executing tests. -Gradle Test Executor 11 started executing tests. +Successfully started process 'Gradle Test Executor 6' +Successfully started process 'Gradle Test Executor 4' +Successfully started process 'Gradle Test Executor 3' +Successfully started process 'Gradle Test Executor 2' Gradle Test Executor 8 started executing tests. -Gradle Test Executor 12 started executing tests. -Gradle Test Executor 6 started executing tests. - -org.broad.igv.util.IGVHttpClientUtilsTest > testExists SKIPPED - -org.broad.igv.util.IGVHttpClientUtilsTest > testGetContentLength SKIPPED - -org.broad.igv.sam.mods.BaseModificationCountsTest > incrementCounts2 SKIPPED -Gradle Test Executor 16 started executing tests. - -org.broad.igv.util.blat.BlatClientTest > blatPOST SKIPPED - -org.broad.igv.util.blat.BlatClientTest > blatGET SKIPPED - -org.broad.igv.util.blat.BlatClientTest > blatTooShort SKIPPED - -org.broad.igv.util.LittleEndianInputStreamTest > testRead SKIPPED - -org.broad.igv.util.blat.LegacyBlatClientTest > fixWebBlat SKIPPED - -org.broad.igv.util.blat.LegacyBlatClientTest > parseUCSCResult SKIPPED - -org.broad.igv.util.blat.LegacyBlatClientTest > parseCustomResult SKIPPED - -org.broad.igv.sam.SamIndexTest > testGetIndexedChromosomes SKIPPED - -org.broad.igv.sam.SamQueryTextReaderTest > testMoran SKIPPED - -org.broad.igv.sam.SamQueryTextReaderTest > testQuery SKIPPED - -org.broad.igv.sam.SamQueryTextReaderTest > testQuery2 SKIPPED - -org.broad.igv.sam.SamQueryTextReaderTest > testQuery3 SKIPPED - -org.broad.igv.util.collections.IntArrayListTest > test STANDARD_OUT - IntArrayList time: 257 +Gradle Test Executor 1 started executing tests. +Gradle Test Executor 9 started executing tests. +Gradle Test Executor 5 started executing tests. -org.broad.igv.tdf.TDFReaderTest > testReader SKIPPED +org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > compareSequences SKIPPED -org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesCompressed SKIPPED +org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > findBlockContaining SKIPPED +Gradle Test Executor 7 started executing tests. +Gradle Test Executor 6 started executing tests. +Gradle Test Executor 3 started executing tests. -org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegionCompressed SKIPPED +org.broad.igv.feature.genome.load.JsonGenomeLoaderTest > loadGenome SKIPPED +Gradle Test Executor 4 started executing tests. -org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegion SKIPPED +org.broad.igv.htsget.HtsgetReaderTest > testReadHeader SKIPPED -org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > compareSequences SKIPPED +org.broad.igv.htsget.HtsgetReaderTest > testReadData SKIPPED +Gradle Test Executor 10 started executing tests. -org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > findBlockContaining SKIPPED -Gradle Test Executor 2 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release +org.broad.igv.feature.ProbeToGeneMapTest > testAgilent SKIPPED -org.broad.igv.util.FileUtilsTest > testFindRelativeHttpPath STANDARD_OUT - dir/test.txt +org.broad.igv.feature.ProbeToGeneMapTest > testAffy SKIPPED -org.broad.igv.util.collections.DoubleArrayListTest > test STANDARD_OUT - IntArrayList time: 11 +org.broad.igv.feature.ProbeToGeneMapTest > testIllumina SKIPPED org.broad.igv.feature.genome.ChromosomeNameComparatorTest > testSort2 STANDARD_OUT -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 19 finished executing tests. org.broad.igv.feature.genome.ChromosomeNameComparatorTest > testSort3 STANDARD_OUT @@ -3811,31 +3757,21 @@ org.broad.igv.feature.genome.ChromosomeNameComparatorTest > foo STANDARD_OUT -1 -1 -Gradle Test Executor 18 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release org.broad.igv.htsget.HtsgetVariantSourceTest > testReadFeatures SKIPPED org.broad.igv.htsget.HtsgetVariantSourceTest > testGetHeader SKIPPED -org.broad.igv.renderer.MappedColorScaleTest > testSerialization STANDARD_ERROR - Jun 15, 2025 3:25:37 AM java.util.prefs.FileSystemPreferences$1 run - INFO: Created user preferences directory. +org.broad.igv.sam.AsciiLineReaderTest > testSpeed SKIPPED -Gradle Test Executor 17 finished executing tests. -org.broad.igv.htsget.HtsgetBAMReaderTest > testQueryAlignments SKIPPED -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release +org.broad.igv.tools.motiffinder.MotifFinderPluginHeadlessTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test -org.broad.igv.sam.cram.CRAMReaderTest > testQueryLocalBaiCram SKIPPED +org.broad.igv.tools.converters.GFFtoBedTest > testConvert STANDARD_ERROR + May 13, 2024 11:15:50 PM java.util.prefs.FileSystemPreferences$1 run + INFO: Created user preferences directory. -org.broad.igv.track.TrackLoaderTestHeaded STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test +org.broad.igv.sam.cram.CRAMReaderTest > testQueryLocalBaiCram SKIPPED org.broad.igv.sam.cram.CRAMReaderTest > testRemoteCraiCram SKIPPED @@ -3845,70 +3781,31 @@ org.broad.igv.sam.cram.CRAMReaderTest > testRemoteBaiCram SKIPPED -org.broad.igv.prefs.PreferencesManagerTest > getPreferences SKIPPED - -org.broad.igv.util.ArrayMemoryTest > compareMemory SKIPPED - org.broad.igv.sam.mods.BaseModificationsTest > testOrientBotFwd STANDARD_OUT 115 -115 -90 -64 -org.broad.igv.feature.genome.load.JsonGenomeLoaderTest > loadGenome SKIPPED - -org.broad.igv.util.ResourceLocatorTest > testGetFormat STANDARD_OUT - bam - -org.broad.igv.tools.motiffinder.MotifFinderPluginHeadlessTest STANDARD_OUT +org.broad.igv.batch.CommandExecutorTest STANDARD_OUT You are trying to start a GUI in a headless environment. Aborting test - -org.broad.igv.sam.AsciiLineReaderTest > testSpeed SKIPPED -Gradle Test Executor 11 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release +Gradle Test Executor 2 started executing tests. org.broad.igv.ui.panel.ReferenceFrameTestHeaded STANDARD_OUT You are trying to start a GUI in a headless environment. Aborting test -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 16 finished executing tests. -org.broad.igv.batch.CommandListenerTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test +org.broad.igv.sam.SamQueryTextReaderTest > testMoran SKIPPED -org.broad.igv.htsget.HtsgetReaderTest > testReadHeader SKIPPED +org.broad.igv.sam.SamQueryTextReaderTest > testQuery SKIPPED -org.broad.igv.htsget.HtsgetReaderTest > testReadData SKIPPED -WARNING: A terminally deprecated method in java.lang.System has been called -Gradle Test Executor 20 finished executing tests. -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 3 finished executing tests. +org.broad.igv.sam.SamQueryTextReaderTest > testQuery2 SKIPPED -org.broad.igv.data.cufflinks.ExpDiffCodecTest > testsamplegene_expdiff STANDARD_ERROR - SEVERE [Jun 15,2025 03:25] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float - SEVERE [Jun 15,2025 03:25] [ExpDiffCodec] LogRatio 1.79769e+308 cannot be parsed as a float +org.broad.igv.sam.SamQueryTextReaderTest > testQuery3 SKIPPED -org.broad.igv.tools.motiffinder.MotifFinderDialogHeadedTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test +org.broad.igv.sam.SamIndexTest > testGetIndexedChromosomes SKIPPED -org.broad.igv.data.cufflinks.ExpDiffCodecTest > testsamplegene_expdiff STANDARD_ERROR - SEVERE [Jun 15,2025 03:25] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float -Gradle Test Executor 7 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release +org.broad.igv.util.collections.DoubleArrayListTest > test STANDARD_OUT + IntArrayList time: 3 org.broad.igv.sam.mods.BaseModificationsTest > testHiFINegativeAlignment STANDARD_OUT 0 0 0 @@ -3919,6 +3816,14 @@ 5 5 5 6 6 6 7 7 7 + +org.broad.igv.tools.motiffinder.MotifFinderDialogHeadedTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test + +org.broad.igv.tools.motiffinder.MotifFinderPluginHeadedTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test + +org.broad.igv.sam.mods.BaseModificationsTest > testHiFINegativeAlignment STANDARD_OUT 8 8 8 9 9 9 10 10 10 @@ -4102,6 +4007,10 @@ 188 -68 188 189 -67 189 190 -66 190 + +org.broad.igv.prefs.PreferencesManagerTest > getPreferences SKIPPED + +org.broad.igv.sam.mods.BaseModificationsTest > testHiFINegativeAlignment STANDARD_OUT 191 -65 191 192 -64 192 193 -63 193 @@ -4144,12 +4053,6 @@ 230 -26 230 231 -25 231 232 -24 232 -Gradle Test Executor 5 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 14 finished executing tests. 233 -23 233 234 -22 234 235 -21 235 @@ -4173,85 +4076,128 @@ 253 -3 253 254 -2 254 255 -1 255 -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -org.broad.igv.tools.motiffinder.MotifFinderPluginHeadedTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test +org.broad.igv.htsget.HtsgetBAMReaderTest > testQueryAlignments SKIPPED -org.broad.igv.feature.ProbeToGeneMapTest > testAgilent SKIPPED +org.broad.igv.tdf.TDFReaderTest > testReader SKIPPED -org.broad.igv.feature.ProbeToGeneMapTest > testAffy SKIPPED +org.broad.igv.util.collections.IntArrayListTest > test STANDARD_OUT + IntArrayList time: 1023 -org.broad.igv.feature.ProbeToGeneMapTest > testIllumina SKIPPED +org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigInteract SKIPPED -org.broad.tribble.TribbleFeatureReaderTest > testQuery SKIPPED +org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigRmsk SKIPPED -org.broad.tribble.TribbleFeatureReaderTest > testGetSequenceNames SKIPPED -Gradle Test Executor 9 finished executing tests. -Gradle Test Executor 6 finished executing tests. +org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigNarrowpeak SKIPPED + +org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigGenePred SKIPPED + +org.broad.igv.util.blat.BlatClientTest > blatPOST SKIPPED + +org.broad.igv.util.blat.BlatClientTest > blatGET SKIPPED + +org.broad.igv.util.blat.BlatClientTest > blatTooShort SKIPPED + +org.broad.igv.util.ArrayMemoryTest > compareMemory SKIPPED + +org.broad.igv.ucsc.twobit.TwoBitSequenceTest > readSequenceRemote SKIPPED + +org.broad.igv.AbstractHeadlessTest > initializationError SKIPPED WARNING: A terminally deprecated method in java.lang.System has been called +Gradle Test Executor 5 finished executing tests. WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release + +org.broad.igv.data.cufflinks.ExpDiffCodecTest > testsamplegene_expdiff STANDARD_ERROR + SEVERE [May 13,2024 23:15] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float + SEVERE [May 13,2024 23:15] [ExpDiffCodec] LogRatio 1.79769e+308 cannot be parsed as a float + SEVERE [May 13,2024 23:15] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float + +org.broad.igv.ucsc.bb.BBDataSourceTest > testBigWigZoom SKIPPED + +org.broad.igv.ucsc.bb.BBDataSourceTest > testBigWigWig SKIPPED + +org.broad.igv.ucsc.bb.BBDataSourceTest > testUncompressedBigwig SKIPPED WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release - -org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT - Random sort: 398 - -org.broad.igv.ucsc.twobit.TwoBitSequenceTest > readSequenceRemote SKIPPED +Gradle Test Executor 1 finished executing tests. +Gradle Test Executor 6 finished executing tests. WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 8 finished executing tests. -org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigInteract SKIPPED +org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT + Random sort: 1101 -org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigRmsk SKIPPED +org.broad.igv.util.blat.LegacyBlatClientTest > fixWebBlat SKIPPED -org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigNarrowpeak SKIPPED +org.broad.igv.util.blat.LegacyBlatClientTest > parseUCSCResult SKIPPED -org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigGenePred SKIPPED -Gradle Test Executor 13 finished executing tests. +org.broad.igv.util.blat.LegacyBlatClientTest > parseCustomResult SKIPPED WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release - -org.broad.igv.AbstractHeadlessTest > initializationError SKIPPED -Gradle Test Executor 21 finished executing tests. +Gradle Test Executor 3 finished executing tests. WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release +Gradle Test Executor 7 finished executing tests. + +org.broad.igv.sam.mods.BaseModificationCountsTest > incrementCounts2 SKIPPED org.broad.igv.sam.BAMFileReaderTest > testClose SKIPPED org.broad.igv.sam.BAMFileReaderTest > testQueryAgainstSam SKIPPED -Gradle Test Executor 15 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 1 finished executing tests. + +org.broad.igv.util.FileUtilsTest > testFindRelativeHttpPath STANDARD_OUT + dir/test.txt + +org.broad.tribble.TribbleFeatureReaderTest > testQuery SKIPPED + +org.broad.tribble.TribbleFeatureReaderTest > testGetSequenceNames SKIPPED WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release +Gradle Test Executor 4 finished executing tests. org.broad.igv.tools.parsers.TestBEDCodecs > testGffTags SKIPPED org.broad.igv.tools.parsers.TestBEDCodecs > testLength1Feature SKIPPED -org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT - Random sort (reversed): 361 +org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesCompressed SKIPPED + +org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegionCompressed SKIPPED + +org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegion SKIPPED + +org.broad.igv.util.ResourceLocatorTest > testGetFormat STANDARD_OUT + bam + +org.broad.igv.util.IGVHttpClientUtilsTest > testExists SKIPPED + +org.broad.igv.util.IGVHttpClientUtilsTest > testGetContentLength SKIPPED + +org.broad.igv.track.TrackLoaderTestHeaded STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test +WARNING: A terminally deprecated method in java.lang.System has been called +WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) +WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker +WARNING: System::setSecurityManager will be removed in a future release Gradle Test Executor 10 finished executing tests. + +org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT + Random sort (reversed): 1271 + +org.broad.igv.batch.CommandListenerTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test +Gradle Test Executor 2 finished executing tests. WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker @@ -4259,32 +4205,27 @@ WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -Gradle Test Executor 12 finished executing tests. WARNING: System::setSecurityManager will be removed in a future release - Random sort (Arrays): 1329 - Sorted sort: 115 - Reverse sorted sort: 142 - Almost sorted sort: 141 - -org.broad.igv.batch.CommandExecutorTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test - -org.broad.igv.ucsc.bb.BBDataSourceTest > testBigWigZoom SKIPPED +Gradle Test Executor 8 finished executing tests. -org.broad.igv.ucsc.bb.BBDataSourceTest > testBigWigWig SKIPPED +org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT + Random sort (Arrays): 4388 + Sorted sort: 663 + Reverse sorted sort: 657 + Almost sorted sort: 728 -org.broad.igv.ucsc.bb.BBDataSourceTest > testUncompressedBigwig SKIPPED -Gradle Test Executor 4 finished executing tests. +org.broad.igv.util.LittleEndianInputStreamTest > testRead SKIPPED WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release -Finished generating test XML results (0.058 secs) into: /build/reproducible-path/igv-2.17.3+dfsg/build/test-results/test +Gradle Test Executor 9 finished executing tests. +Finished generating test XML results (0.206 secs) into: /build/reproducible-path/igv-2.17.3+dfsg/build/test-results/test Generating HTML test report... -Finished generating test html results (0.106 secs) into: /build/reproducible-path/igv-2.17.3+dfsg/build/reports/tests/test -:test (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 6.562 secs. +Finished generating test html results (0.35 secs) into: /build/reproducible-path/igv-2.17.3+dfsg/build/reports/tests/test +:test (Thread[Task worker for ':',5,main]) completed. Took 26.32 secs. -BUILD SUCCESSFUL in 26s +BUILD SUCCESSFUL in 1m 48s 4 actionable tasks: 2 executed, 2 up-to-date create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -4326,12 +4267,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3905555/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3905555/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/335579 and its subdirectories -I: Current time: Sun Jun 15 03:25:56 -12 2025 -I: pbuilder-time-stamp: 1750001156 +I: removing directory /srv/workspace/pbuilder/3905555 and its subdirectories +I: Current time: Mon May 13 23:17:44 +14 2024 +I: pbuilder-time-stamp: 1715591864