Diff of the two buildlogs: -- --- b1/build.log 2025-03-08 19:42:01.862684416 +0000 +++ b2/build.log 2025-03-08 19:43:49.517834126 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Mar 8 07:37:39 -12 2025 -I: pbuilder-time-stamp: 1741462659 +I: Current time: Sat Apr 11 16:05:02 +14 2026 +I: pbuilder-time-stamp: 1775873102 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying adjust-shenwei356-kmers.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2775233/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3924721/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 11 02:05 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3924721/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3924721/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='61964073f530436d85f93fd24e69794f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2775233' - PS1='# ' - PS2='> ' + INVOCATION_ID=2cbbe1bba3ee49cd8be3b7503f0c8c78 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3924721 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yjnq1BmO/pbuilderrc_fcH0 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yjnq1BmO/b1 --logfile b1/build.log golang-github-shenwei356-bio_0.13.3-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yjnq1BmO/pbuilderrc_OWvS --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yjnq1BmO/b2 --logfile b2/build.log golang-github-shenwei356-bio_0.13.3-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2775233/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3924721/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -219,7 +251,7 @@ Get: 92 http://deb.debian.org/debian trixie/main amd64 golang-github-shenwei356-util-dev all 0.5.2-1 [18.4 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 golang-github-will-rowe-nthash-dev all 0.4.0-1 [5644 B] Get: 94 http://deb.debian.org/debian trixie/main amd64 golang-github-zeebo-wyhash-dev all 0.0.1-3 [23.5 kB] -Fetched 116 MB in 7s (17.2 MB/s) +Fetched 116 MB in 3s (45.3 MB/s) Preconfiguring packages ... Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19800 files and directories currently installed.) @@ -537,8 +569,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Mar 8 19:39:53 UTC 2025. -Universal Time is now: Sat Mar 8 19:39:53 UTC 2025. +Local time is now: Sat Apr 11 02:06:12 UTC 2026. +Universal Time is now: Sat Apr 11 02:06:12 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up golang-github-cespare-xxhash-dev (2.3.0-1) ... @@ -616,7 +648,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/golang-github-shenwei356-bio-0.13.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../golang-github-shenwei356-bio_0.13.3-1_source.changes +I: user script /srv/workspace/pbuilder/3924721/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3924721/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/golang-github-shenwei356-bio-0.13.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../golang-github-shenwei356-bio_0.13.3-1_source.changes dpkg-buildpackage: info: source package golang-github-shenwei356-bio dpkg-buildpackage: info: source version 0.13.3-1 dpkg-buildpackage: info: source distribution unstable @@ -634,209 +670,209 @@ dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang - cd _build && go install -trimpath -v -p 20 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util + cd _build && go install -trimpath -v -p 42 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util +internal/unsafeheader internal/goarch -internal/msan -cmp +internal/profilerecord +vendor/golang.org/x/crypto/internal/alias +internal/nettrace internal/godebugs -internal/goos -unicode/utf8 -internal/itoa -math/bits -unicode -github.com/dsnet/compress/bzip2/internal/sais +github.com/klauspost/compress/internal/le +crypto/internal/fips140/alias internal/coverage/rtcov -internal/unsafeheader -internal/cpu +container/list internal/byteorder -internal/profilerecord -github.com/dsnet/compress/internal +internal/itoa internal/runtime/syscall -internal/goexperiment +internal/cpu +crypto/internal/boring/sig +unicode/utf16 +internal/asan +log/internal +unicode internal/runtime/atomic +vendor/golang.org/x/crypto/cryptobyte/asn1 +cmp +internal/goos +github.com/klauspost/compress/internal/cpuinfo +github.com/ulikunitz/xz/internal/hash +unicode/utf8 +github.com/dsnet/compress/bzip2/internal/sais +internal/msan +github.com/dsnet/compress/internal +math/bits sync/atomic -crypto/internal/fips140/alias -internal/asan +internal/goexperiment internal/runtime/math -crypto/internal/boring/sig internal/abi -github.com/klauspost/compress/internal/cpuinfo -github.com/klauspost/compress/internal/le -log/internal -github.com/ulikunitz/xz/internal/hash -container/list -internal/runtime/sys crypto/internal/fips140/subtle -unicode/utf16 -vendor/golang.org/x/crypto/cryptobyte/asn1 -vendor/golang.org/x/crypto/internal/alias -internal/nettrace -github.com/elliotwutingfeng/asciiset -internal/chacha8rand +internal/runtime/sys crypto/internal/fips140deps/byteorder -internal/bytealg +internal/chacha8rand +github.com/elliotwutingfeng/asciiset crypto/internal/fips140deps/cpu +internal/bytealg math internal/runtime/exithook internal/stringslite -github.com/klauspost/compress internal/race -internal/runtime/maps internal/sync +internal/runtime/maps +github.com/klauspost/compress runtime -internal/reflectlite iter -sync -crypto/subtle weak -slices +crypto/subtle +internal/reflectlite +sync maps -internal/bisect +slices internal/testlog +internal/bisect internal/singleflight unique -runtime/cgo errors sort -internal/godebug -io +runtime/cgo strconv -internal/oserror path -math/rand/v2 +io +internal/godebug +internal/oserror vendor/golang.org/x/net/dns/dnsmessage +math/rand/v2 bytes +strings syscall +hash +crypto/internal/randutil crypto/internal/fips140deps/godebug -reflect math/rand -hash net/netip -crypto/internal/randutil -strings -hash/crc32 +reflect crypto +hash/crc32 hash/crc64 vendor/golang.org/x/text/transform github.com/twotwotwo/sorts -github.com/twotwotwo/sorts/sortutil -github.com/shenwei356/bio/util -bufio github.com/dsnet/compress/internal/errors -crypto/internal/impl net/http/internal/ascii crypto/internal/fips140 +crypto/internal/impl +bufio regexp/syntax -crypto/internal/fips140/sha256 -crypto/internal/fips140/sha3 crypto/tls/internal/fips140tls +crypto/internal/fips140/sha256 crypto/internal/fips140/sha512 +crypto/internal/fips140/sha3 +github.com/twotwotwo/sorts/sortutil +github.com/shenwei356/bio/util github.com/dsnet/compress -crypto/sha3 crypto/internal/fips140/hmac -time -internal/syscall/execenv -internal/syscall/unix -crypto/internal/fips140hash +crypto/sha3 crypto/internal/fips140/check -regexp +crypto/internal/fips140hash +crypto/internal/fips140/tls12 +crypto/internal/fips140/hkdf crypto/internal/fips140/edwards25519/field -crypto/internal/fips140/aes crypto/internal/fips140/bigmod +crypto/internal/fips140/aes crypto/internal/fips140/nistec/fiat -crypto/internal/fips140/hkdf -crypto/internal/fips140/tls12 crypto/internal/fips140/tls13 +regexp crypto/internal/fips140/edwards25519 +internal/syscall/execenv +internal/syscall/unix +time +crypto/internal/fips140/nistec +context io/fs internal/poll -context internal/filepathlite +os internal/fmtsort encoding/binary -crypto/internal/fips140/nistec -os +encoding/base64 github.com/cespare/xxhash -github.com/klauspost/compress/internal/snapref vendor/golang.org/x/crypto/internal/poly1305 -encoding/base64 +github.com/klauspost/compress/internal/snapref github.com/zeebo/wyhash golang.org/x/sys/unix -encoding/pem crypto/internal/sysrand fmt path/filepath vendor/golang.org/x/sys/cpu -net crypto/internal/entropy +encoding/pem crypto/internal/fips140/drbg -crypto/internal/fips140/aes/gcm crypto/internal/fips140only crypto/internal/fips140/ecdh -crypto/internal/fips140/ecdsa crypto/internal/fips140/ed25519 -crypto/internal/fips140/mlkem +crypto/internal/fips140/ecdsa crypto/internal/fips140/rsa +crypto/internal/fips140/mlkem +crypto/internal/fips140/aes/gcm os/exec -crypto/md5 crypto/rc4 -crypto/cipher -github.com/dsnet/compress/internal/prefix +crypto/md5 encoding/hex -github.com/klauspost/compress/fse -math/big -log runtime/debug github.com/ulikunitz/xz/internal/xlog -vendor/golang.org/x/net/http2/hpack -mime -mime/quotedprintable -vendor/golang.org/x/text/unicode/norm +github.com/dsnet/compress/internal/prefix net/url +mime/quotedprintable +github.com/klauspost/compress/fse +log +github.com/will-rowe/nthash compress/flate net/http/internal -os/user +mime +vendor/golang.org/x/net/http2/hpack github.com/shenwei356/util/byteutil -github.com/will-rowe/nthash -vendor/golang.org/x/crypto/chacha20 -crypto/des -crypto/internal/boring +vendor/golang.org/x/text/unicode/norm +math/big github.com/shenwei356/bio/seq -vendor/golang.org/x/text/unicode/bidi -crypto/sha256 -crypto/aes -crypto/ecdh github.com/ulikunitz/xz/lzma -crypto/sha512 +vendor/golang.org/x/text/unicode/bidi github.com/klauspost/compress/huff0 -crypto/hmac -crypto/sha1 -vendor/golang.org/x/crypto/chacha20poly1305 github.com/dsnet/compress/bzip2 +crypto/cipher +github.com/shenwei356/bio/sketches compress/gzip github.com/klauspost/compress/flate -github.com/shenwei356/bio/sketches -github.com/edsrzf/mmap-go +crypto/internal/boring +crypto/des +vendor/golang.org/x/crypto/chacha20 vendor/golang.org/x/text/secure/bidirule -github.com/shenwei356/bio/seqio/fai +crypto/aes +crypto/sha256 +crypto/ecdh +crypto/hmac +crypto/sha512 +crypto/sha1 +vendor/golang.org/x/crypto/chacha20poly1305 vendor/golang.org/x/net/idna github.com/ulikunitz/xz +os/user +net github.com/klauspost/pgzip +github.com/edsrzf/mmap-go crypto/rand crypto/internal/boring/bbig -crypto/elliptic crypto/dsa +crypto/elliptic encoding/asn1 crypto/ed25519 -crypto/rsa crypto/internal/hpke +crypto/rsa github.com/klauspost/compress/zstd +github.com/shenwei356/bio/seqio/fai crypto/x509/pkix vendor/golang.org/x/crypto/cryptobyte crypto/ecdsa -crypto/x509 -net/textproto vendor/golang.org/x/net/http/httpproxy +net/textproto +crypto/x509 vendor/golang.org/x/net/http/httpguts mime/multipart crypto/tls @@ -844,49 +880,49 @@ net/http github.com/shenwei356/xopen github.com/shenwei356/breader -github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/taxdump +github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/featio/gtf dh_auto_test -O--builddirectory=_build -O--buildsystem=golang - cd _build && go test -vet=off -v -p 20 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util + cd _build && go test -vet=off -v -p 42 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util === RUN TestGTF -{140 Twinscan inter 5141 8522 0xc0001244f0 []} -{140 Twinscan inter_CNS 8523 9711 0xc000124510 []} -{140 Twinscan inter 9712 13182 0xc000124520 []} -{140 Twinscan 3UTR 65149 65487 0xc000124530 []} -{140 Twinscan 3UTR 66823 66992 0xc000124540 []} -{140 Twinscan stop_codon 66993 66995 0xc000124550 0xc00011a2d0 []} -{140 Twinscan CDS 66996 66999 0xc000124560 0xc00011a2d8 []} -{140 Twinscan intron_CNS 70103 70151 0xc000124570 []} -{140 Twinscan CDS 70207 70294 0xc000124580 0xc00011a2e0 []} -{140 Twinscan CDS 71696 71807 0xc000124590 0xc00011a2e8 []} -{140 Twinscan start_codon 71805 71806 0xc0001245a0 0xc00011a2f0 []} -{140 Twinscan start_codon 73222 73222 0xc0001245b0 0xc00011a2f8 []} -{140 Twinscan CDS 73222 73222 0xc0001245c0 0xc00011a300 []} -{140 Twinscan 5UTR 73223 73504 0xc0001245d0 []} +{140 Twinscan inter 5141 8522 0xc000038530 []} +{140 Twinscan inter_CNS 8523 9711 0xc000038550 []} +{140 Twinscan inter 9712 13182 0xc000038560 []} +{140 Twinscan 3UTR 65149 65487 0xc000038570 []} +{140 Twinscan 3UTR 66823 66992 0xc000038580 []} +{140 Twinscan stop_codon 66993 66995 0xc000038590 0xc0000123f0 []} +{140 Twinscan CDS 66996 66999 0xc0000385a0 0xc0000123f8 []} +{140 Twinscan intron_CNS 70103 70151 0xc0000385b0 []} +{140 Twinscan CDS 70207 70294 0xc0000385c0 0xc000012400 []} +{140 Twinscan CDS 71696 71807 0xc0000385d0 0xc000012408 []} +{140 Twinscan start_codon 71805 71806 0xc0000385e0 0xc000012410 []} +{140 Twinscan start_codon 73222 73222 0xc0000385f0 0xc000012418 []} +{140 Twinscan CDS 73222 73222 0xc000038600 0xc000012420 []} +{140 Twinscan 5UTR 73223 73504 0xc000038610 []} --- PASS: TestGTF (0.00s) === RUN TestGTF2 -{381 Twinscan exon 150 200 0xc000124640 []} -{381 Twinscan exon 300 401 0xc000124660 []} -{381 Twinscan CDS 380 401 0xc000124670 0xc00011a370 []} -{381 Twinscan exon 501 650 0xc000124680 []} -{381 Twinscan CDS 501 650 0xc000124690 0xc00011a378 []} -{381 Twinscan exon 700 800 0xc0001246a0 []} -{381 Twinscan CDS 700 707 0xc0001246b0 0xc00011a380 []} -{381 Twinscan exon 900 1000 0xc0001246c0 []} -{381 Twinscan start_codon 380 382 0xc0001246d0 0xc00011a388 []} -{381 Twinscan stop_codon 708 710 0xc0001246e0 0xc00011a390 []} +{381 Twinscan exon 150 200 0xc000210000 []} +{381 Twinscan exon 300 401 0xc000210020 []} +{381 Twinscan CDS 380 401 0xc000210030 0xc000202020 []} +{381 Twinscan exon 501 650 0xc000210040 []} +{381 Twinscan CDS 501 650 0xc000210050 0xc000202028 []} +{381 Twinscan exon 700 800 0xc000210060 []} +{381 Twinscan CDS 700 707 0xc000210070 0xc000202030 []} +{381 Twinscan exon 900 1000 0xc000210080 []} +{381 Twinscan start_codon 380 382 0xc000210090 0xc000202038 []} +{381 Twinscan stop_codon 708 710 0xc0002100a0 0xc000202040 []} --- PASS: TestGTF2 (0.00s) === RUN TestGTF3 -{NC_002516.2 genbank gene 6261828 6263564 0xc000124750 0xc00011a400 []} -{NC_002516.2 genbank CDS 6261828 6263564 0xc000124770 0xc00011a408 []} -{NC_002516.2 genbank gene 6263805 6264212 0xc000124780 0xc00011a410 []} -{NC_002516.2 genbank CDS 6263805 6264212 0xc000124790 0xc00011a418 []} -{NC_002516.2 genbank gene 6264227 6264361 0xc0001247a0 0xc00011a420 []} -{NC_002516.2 genbank CDS 6264227 6264361 0xc0001247b0 0xc00011a428 []} +{NC_002516.2 genbank gene 6261828 6263564 0xc000210110 0xc000202078 []} +{NC_002516.2 genbank CDS 6261828 6263564 0xc000210130 0xc0002020d0 []} +{NC_002516.2 genbank gene 6263805 6264212 0xc000210140 0xc0002020d8 []} +{NC_002516.2 genbank CDS 6263805 6264212 0xc000210150 0xc0002020e0 []} +{NC_002516.2 genbank gene 6264227 6264361 0xc000210160 0xc0002020e8 []} +{NC_002516.2 genbank CDS 6264227 6264361 0xc000210170 0xc0002020f0 []} --- PASS: TestGTF3 (0.00s) PASS -ok github.com/shenwei356/bio/featio/gtf 0.352s +ok github.com/shenwei356/bio/featio/gtf 0.006s === RUN TestAlphabet --- PASS: TestAlphabet (0.00s) === RUN TestAlphabet2 @@ -910,39 +946,39 @@ === RUN TestSubSeqInplace --- PASS: TestSubSeqInplace (0.00s) PASS -ok github.com/shenwei356/bio/seq 0.344s +ok github.com/shenwei356/bio/seq 0.021s === RUN TestFastaReader ---- PASS: TestFastaReader (0.07s) +--- PASS: TestFastaReader (0.00s) === RUN TestFastaReaderNotMapWholeFile ---- PASS: TestFastaReaderNotMapWholeFile (0.03s) +--- PASS: TestFastaReaderNotMapWholeFile (0.00s) === RUN TestFastaReader2NotMapWholeFile ---- PASS: TestFastaReader2NotMapWholeFile (0.06s) +--- PASS: TestFastaReader2NotMapWholeFile (0.01s) === RUN TestFastaReader2 --- PASS: TestFastaReader2 (0.01s) PASS -ok github.com/shenwei356/bio/seqio/fai 0.536s +ok github.com/shenwei356/bio/seqio/fai 0.050s === RUN TestFastaReader2 ---- PASS: TestFastaReader2 (0.11s) +--- PASS: TestFastaReader2 (0.00s) === RUN TestFastaReader3 ---- PASS: TestFastaReader3 (0.01s) +--- PASS: TestFastaReader3 (0.00s) === RUN TestFastqReadern ---- PASS: TestFastqReadern (0.08s) +--- PASS: TestFastqReadern (0.01s) === RUN TestFastaReader ---- PASS: TestFastaReader (0.11s) +--- PASS: TestFastaReader (0.01s) === RUN TestFastqReader ---- PASS: TestFastqReader (0.06s) +--- PASS: TestFastqReader (0.01s) === RUN TestFastqReader2 ---- PASS: TestFastqReader2 (0.08s) +--- PASS: TestFastqReader2 (0.01s) === RUN TestFastqReader3 ---- PASS: TestFastqReader3 (0.04s) +--- PASS: TestFastqReader3 (0.01s) === RUN TestBlankFile ---- PASS: TestBlankFile (0.05s) +--- PASS: TestBlankFile (0.01s) === RUN TestBlankFile2 ---- PASS: TestBlankFile2 (0.05s) +--- PASS: TestBlankFile2 (0.01s) === RUN TestEmptyFile ---- PASS: TestEmptyFile (0.04s) +--- PASS: TestEmptyFile (0.01s) PASS -ok github.com/shenwei356/bio/seqio/fastx 0.891s +ok github.com/shenwei356/bio/seqio/fastx 0.091s === RUN TestProteinIterator --- PASS: TestProteinIterator (0.00s) === RUN TestKmerIterator @@ -958,15 +994,15 @@ === RUN TestSyncmer --- PASS: TestSyncmer (0.00s) PASS -ok github.com/shenwei356/bio/sketches 0.364s +ok github.com/shenwei356/bio/sketches 0.023s === RUN TestPackTwoTaxids --- PASS: TestPackTwoTaxids (0.00s) PASS -ok github.com/shenwei356/bio/taxdump 0.044s +ok github.com/shenwei356/bio/taxdump 0.005s === RUN Test --- PASS: Test (0.00s) PASS -ok github.com/shenwei356/bio/util 0.040s +ok github.com/shenwei356/bio/util 0.003s create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=_build -O--buildsystem=golang dh_prep -O--builddirectory=_build -O--buildsystem=golang @@ -998,12 +1034,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3924721/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3924721/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2775233 and its subdirectories -I: Current time: Sat Mar 8 07:41:59 -12 2025 -I: pbuilder-time-stamp: 1741462919 +I: removing directory /srv/workspace/pbuilder/3924721 and its subdirectories +I: Current time: Sat Apr 11 16:06:47 +14 2026 +I: pbuilder-time-stamp: 1775873207