Diff of the two buildlogs: -- --- b1/build.log 2024-10-20 20:08:38.412331530 +0000 +++ b2/build.log 2024-10-20 20:10:25.632525454 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Nov 22 14:29:36 -12 2025 -I: pbuilder-time-stamp: 1763864976 +I: Current time: Mon Oct 21 10:08:42 +14 2024 +I: pbuilder-time-stamp: 1729454922 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,51 +30,83 @@ dpkg-source: info: applying python3.12.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/744013/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/426167/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 20 20:08 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/426167/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/426167/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='8e04ace24c1945529d4fe0b2035f2d72' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='744013' - PS1='# ' - PS2='> ' + INVOCATION_ID=cd82346ffb5d41009ba67691b6dda356 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=426167 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iOhKqZu1/pbuilderrc_OJMj --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iOhKqZu1/b1 --logfile b1/build.log flye_2.9.5+dfsg-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iOhKqZu1/pbuilderrc_g2DV --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iOhKqZu1/b2 --logfile b2/build.log flye_2.9.5+dfsg-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/744013/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/426167/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -212,7 +244,7 @@ Get: 86 http://deb.debian.org/debian trixie/main amd64 libminimap2-dev amd64 2.27+dfsg-1+b1 [130 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.5-2 [104 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 samtools amd64 1.20-3 [653 kB] -Fetched 33.4 MB in 3s (9989 kB/s) +Fetched 33.4 MB in 3s (11.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19799 files and directories currently installed.) @@ -516,8 +548,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Nov 23 02:30:10 UTC 2025. -Universal Time is now: Sun Nov 23 02:30:10 UTC 2025. +Local time is now: Sun Oct 20 20:09:15 UTC 2024. +Universal Time is now: Sun Oct 20 20:09:15 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -593,7 +625,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/flye-2.9.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../flye_2.9.5+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/426167/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/426167/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/flye-2.9.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../flye_2.9.5+dfsg-1_source.changes dpkg-buildpackage: info: source package flye dpkg-buildpackage: info: source version 2.9.5+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -629,64 +665,64 @@ running build_py creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye copying flye/__build__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye -copying flye/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye -copying flye/__version__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye copying flye/main.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye +copying flye/__version__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye +copying flye/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly +copying flye/assembly/assemble.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly copying flye/assembly/repeat_graph.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly copying flye/assembly/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly -copying flye/assembly/assemble.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly copying flye/assembly/scaffolder.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config -copying flye/config/py_cfg.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config copying flye/config/configurator.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config +copying flye/config/py_cfg.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config copying flye/config/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing -copying flye/polishing/alignment.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing -copying flye/polishing/polish.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing -copying flye/polishing/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing copying flye/polishing/bubbles.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing copying flye/polishing/consensus.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing +copying flye/polishing/alignment.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing +copying flye/polishing/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing +copying flye/polishing/polish.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils -copying flye/utils/utils.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils -copying flye/utils/bytes2human.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils -copying flye/utils/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils copying flye/utils/fasta_parser.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils +copying flye/utils/bytes2human.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils copying flye/utils/sam_parser.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils +copying flye/utils/utils.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils +copying flye/utils/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph copying flye/repeat_graph/repeat_graph.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph copying flye/repeat_graph/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph copying flye/repeat_graph/graph_alignment.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids -copying flye/short_plasmids/utils.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids copying flye/short_plasmids/plasmids.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids copying flye/short_plasmids/circular_sequences.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids -copying flye/short_plasmids/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids copying flye/short_plasmids/unmapped_reads.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids +copying flye/short_plasmids/utils.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids +copying flye/short_plasmids/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle -copying flye/trestle/graph_resolver.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle -copying flye/trestle/trestle.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle -copying flye/trestle/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle copying flye/trestle/trestle_config.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle +copying flye/trestle/trestle.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle +copying flye/trestle/graph_resolver.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle copying flye/trestle/divergence.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle +copying flye/trestle/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests -copying flye/tests/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests copying flye/tests/test_toy.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests +copying flye/tests/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg -copying flye/config/bin_cfg/nano_r94_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg -copying flye/config/bin_cfg/asm_nano_hq.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg -copying flye/config/bin_cfg/pacbio_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg -copying flye/config/bin_cfg/pacbio_chm13_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg -copying flye/config/bin_cfg/asm_raw_reads.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg copying flye/config/bin_cfg/nano_r94_g36_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg -copying flye/config/bin_cfg/pacbio_chm13_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg +copying flye/config/bin_cfg/asm_corrected_reads.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_defaults.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg +copying flye/config/bin_cfg/asm_nano_hq.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg copying flye/config/bin_cfg/nano_r94_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg -copying flye/config/bin_cfg/asm_corrected_reads.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg +copying flye/config/bin_cfg/pacbio_chm13_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg +copying flye/config/bin_cfg/asm_raw_reads.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_hifi.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg +copying flye/config/bin_cfg/pacbio_chm13_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_subasm.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg copying flye/config/bin_cfg/pacbio_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg +copying flye/config/bin_cfg/nano_r94_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg copying flye/config/bin_cfg/nano_r94_g36_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg +copying flye/config/bin_cfg/pacbio_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data copying flye/tests/data/ecoli_500kb_reads.fastq.gz -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data copying flye/tests/data/ecoli_500kb.fasta -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data @@ -784,6 +820,7 @@ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: note: remove the ‘< >’ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG sequence/edlib.cpp -o sequence/edlib.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG sequence/overlap.cpp -o sequence/overlap.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG sequence/sequence.cpp -o sequence/sequence.o In file included from sequence/overlap.h:12, from sequence/overlap.cpp:19: /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:59:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -798,6 +835,8 @@ 91 | intervalVector& ivals, | ^~~~~~~~~~~~~~ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: note: remove the ‘< >’ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG sequence/sequence_container.cpp -o sequence/sequence_container.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG sequence/vertex_index.cpp -o sequence/vertex_index.o In file included from sequence/overlap.cpp:25: sequence/../common/bfcontainer.h: In instantiation of ‘BFContainer::BFIterator BFContainer::BFIterator::operator+(difference_type) const [with T = {anonymous}::KmerMatch; long unsigned int ChunkSize = 1048576; difference_type = long int]’: sequence/overlap.cpp:240:43: required from here @@ -815,9 +854,6 @@ sequence/../common/bfcontainer.h:141:21: note: because ‘BFContainer<{anonymous}::KmerMatch>::BFIterator’ has user-provided ‘BFContainer::BFIterator& BFContainer::BFIterator::operator=(const BFContainer::BFIterator&) [with T = {anonymous}::KmerMatch; long unsigned int ChunkSize = 1048576]’ 141 | BFIterator& operator=(const BFIterator &rhs) | ^~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG sequence/sequence.cpp -o sequence/sequence.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG sequence/sequence_container.cpp -o sequence/sequence_container.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG sequence/vertex_index.cpp -o sequence/vertex_index.o sequence/../common/bfcontainer.h: In instantiation of ‘BFContainer::BFIterator BFContainer::BFIterator::operator-(difference_type) const [with T = {anonymous}::KmerMatch; long unsigned int ChunkSize = 1048576; difference_type = long int]’: /usr/include/c++/14/bits/stl_algo.h:1855:71: required from ‘_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = BFContainer<{anonymous}::KmerMatch>::BFIterator; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’ 1855 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, @@ -857,6 +893,16 @@ 141 | BFIterator& operator=(const BFIterator &rhs) | ^~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/graph_processing.cpp -o repeat_graph/graph_processing.o +sequence/vertex_index.cpp: In member function ‘void KmerCounter::count(bool)’: +sequence/vertex_index.cpp:380:28: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct std::atomic’ with no trivial copy-assignment; use value-initialization instead [-Wclass-memaccess] + 380 | std::memset(_flatCounter, 0, COUNTER_LEN); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo/cuckoohash_map.hh:8, + from sequence/vertex_index.h:15, + from sequence/vertex_index.cpp:12: +/usr/include/c++/14/atomic:758:12: note: ‘struct std::atomic’ declared here + 758 | struct atomic : __atomic_base + | ^~~~~~~~~~~~~~~~~~~~~ In file included from repeat_graph/../sequence/overlap.h:12, from repeat_graph/repeat_graph.h:11, from repeat_graph/graph_processing.h:10, @@ -873,16 +919,6 @@ 91 | intervalVector& ivals, | ^~~~~~~~~~~~~~ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: note: remove the ‘< >’ -sequence/vertex_index.cpp: In member function ‘void KmerCounter::count(bool)’: -sequence/vertex_index.cpp:380:28: warning: ‘void* memset(void*, int, size_t)’ clearing an object of type ‘struct std::atomic’ with no trivial copy-assignment; use value-initialization instead [-Wclass-memaccess] - 380 | std::memset(_flatCounter, 0, COUNTER_LEN); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo/cuckoohash_map.hh:8, - from sequence/vertex_index.h:15, - from sequence/vertex_index.cpp:12: -/usr/include/c++/14/atomic:758:12: note: ‘struct std::atomic’ declared here - 758 | struct atomic : __atomic_base - | ^~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/haplotype_resolver.cpp -o repeat_graph/haplotype_resolver.o In file included from repeat_graph/../sequence/overlap.h:12, from repeat_graph/repeat_graph.h:11, @@ -927,8 +963,8 @@ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/read_aligner.cpp -o repeat_graph/read_aligner.o In file included from repeat_graph/../sequence/overlap.h:12, from repeat_graph/repeat_graph.h:11, - from repeat_graph/multiplicity_inferer.h:7, - from repeat_graph/multiplicity_inferer.cpp:5: + from repeat_graph/output_generator.h:13, + from repeat_graph/output_generator.cpp:5: /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:59:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 59 | IntervalTree(void) | ^ @@ -943,8 +979,8 @@ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: note: remove the ‘< >’ In file included from repeat_graph/../sequence/overlap.h:12, from repeat_graph/repeat_graph.h:11, - from repeat_graph/output_generator.h:13, - from repeat_graph/output_generator.cpp:5: + from repeat_graph/multiplicity_inferer.h:7, + from repeat_graph/multiplicity_inferer.cpp:5: /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:59:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 59 | IntervalTree(void) | ^ @@ -1108,124 +1144,124 @@ creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12 creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph/repeat_graph.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph/graph_alignment.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph/__pycache__ -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph/__pycache__ +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/trestle_config.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/trestle.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/graph_resolver.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/divergence.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/__pycache__ creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly/assemble.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly/repeat_graph.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly/assemble.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly/scaffolder.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly/__pycache__ copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly/__pycache__ +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/bubbles.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/consensus.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/alignment.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/polish.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/__pycache__ creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/utils.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/bytes2human.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/fasta_parser.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/bytes2human.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/sam_parser.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/utils.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/__pycache__ copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/__pycache__ -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/utils.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/plasmids.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/circular_sequences.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/unmapped_reads.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/__pycache__ -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/__pycache__ copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/__build__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/__version__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph/repeat_graph.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph/graph_alignment.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/main.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/graph_resolver.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/trestle.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/trestle_config.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/divergence.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/__pycache__ -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/__pycache__ creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/configurator.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/py_cfg.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/nano_r94_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_nano_hq.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/pacbio_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/pacbio_chm13_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_raw_reads.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/nano_r94_g36_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/pacbio_chm13_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_corrected_reads.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_defaults.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_nano_hq.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/nano_r94_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_corrected_reads.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/pacbio_chm13_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_raw_reads.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_hifi.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/pacbio_chm13_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_subasm.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/pacbio_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/nano_r94_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/nano_r94_g36_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/py_cfg.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/configurator.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/pacbio_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/__pycache__ copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/__pycache__ -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__pycache__ -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/__version__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/data copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data/ecoli_500kb_reads.fastq.gz -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/data copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data/ecoli_500kb.fasta -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/data copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data/ecoli_500kb_reads_hifi.fastq.gz -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/data -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/test_toy.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/__pycache__ -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/__pycache__/test_toy.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/__pycache__ copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/__pycache__ -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/alignment.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/polish.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/bubbles.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/consensus.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/__pycache__ -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/__pycache__ -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph/repeat_graph.py to repeat_graph.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph/graph_alignment.py to graph_alignment.cpython-312.pyc +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/__pycache__/test_toy.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/plasmids.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/circular_sequences.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/unmapped_reads.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/utils.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/__pycache__ +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__pycache__ +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/trestle_config.py to trestle_config.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/trestle.py to trestle.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/graph_resolver.py to graph_resolver.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/divergence.py to divergence.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly/assemble.py to assemble.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly/repeat_graph.py to repeat_graph.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly/assemble.py to assemble.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly/scaffolder.py to scaffolder.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/utils.py to utils.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/bytes2human.py to bytes2human.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/bubbles.py to bubbles.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/consensus.py to consensus.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/alignment.py to alignment.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/polish.py to polish.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/fasta_parser.py to fasta_parser.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/bytes2human.py to bytes2human.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/sam_parser.py to sam_parser.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/utils.py to utils.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/plasmids.py to plasmids.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/circular_sequences.py to circular_sequences.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/unmapped_reads.py to unmapped_reads.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/utils.py to utils.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__build__.py to __build__.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__version__.py to __version__.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph/repeat_graph.py to repeat_graph.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph/graph_alignment.py to graph_alignment.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/main.py to main.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/graph_resolver.py to graph_resolver.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/trestle.py to trestle.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/trestle_config.py to trestle_config.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/divergence.py to divergence.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/py_cfg.py to py_cfg.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/configurator.py to configurator.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/py_cfg.py to py_cfg.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__version__.py to __version__.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/test_toy.py to test_toy.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/alignment.py to alignment.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/polish.py to polish.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/bubbles.py to bubbles.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/consensus.py to consensus.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/plasmids.py to plasmids.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/circular_sequences.py to circular_sequences.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/unmapped_reads.py to unmapped_reads.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/utils.py to utils.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating flye.egg-info @@ -1275,12 +1311,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/426167/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/426167/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/744013 and its subdirectories -I: Current time: Sat Nov 22 14:31:37 -12 2025 -I: pbuilder-time-stamp: 1763865097 +I: removing directory /srv/workspace/pbuilder/426167 and its subdirectories +I: Current time: Mon Oct 21 10:10:24 +14 2024 +I: pbuilder-time-stamp: 1729455024