Diff of the two buildlogs: -- --- b1/build.log 2024-06-10 21:16:51.795676107 +0000 +++ b2/build.log 2024-06-11 01:35:41.530039710 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jul 13 13:32:36 -12 2025 -I: pbuilder-time-stamp: 1752456756 +I: Current time: Tue Jun 11 11:16:58 +14 2024 +I: pbuilder-time-stamp: 1718054218 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -41,52 +41,84 @@ dpkg-source: info: applying 42c43485e81ada306f0b3f1dc735d95539174cbc.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1322580/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3905412/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 10 21:17 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3905412/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3905412/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='c88c7a36be794220bc486a4697e3ddcd' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1322580' - PS1='# ' - PS2='> ' + INVOCATION_ID=2ed30be1810948f7839cdf822310c2e5 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3905412 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZhJmvlP0/pbuilderrc_i2hE --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZhJmvlP0/b1 --logfile b1/build.log fenics-dolfinx_0.8.0-9.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZhJmvlP0/pbuilderrc_EGZX --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZhJmvlP0/b2 --logfile b2/build.log fenics-dolfinx_0.8.0-9.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jul 12 17:47 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1322580/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 10 11:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3905412/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -779,7 +811,7 @@ Get: 527 http://deb.debian.org/debian trixie/main amd64 python3-sphinx-rtd-theme all 2.0.0+dfsg-1 [28.3 kB] Get: 528 http://deb.debian.org/debian trixie/main amd64 python3-wheel-whl all 0.43.0-1 [68.8 kB] Get: 529 http://deb.debian.org/debian trixie/main amd64 python3-virtualenv all 20.26.2+ds-1 [70.8 kB] -Fetched 457 MB in 5s (89.8 MB/s) +Fetched 457 MB in 20s (23.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19687 files and directories currently installed.) @@ -2457,8 +2489,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Jul 14 01:34:16 UTC 2025. -Universal Time is now: Mon Jul 14 01:34:16 UTC 2025. +Local time is now: Mon Jun 10 21:23:26 UTC 2024. +Universal Time is now: Mon Jun 10 21:23:26 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:amd64 (1.83.0-3) ... @@ -2969,7 +3001,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/fenics-dolfinx-0.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fenics-dolfinx_0.8.0-9_source.changes +I: user script /srv/workspace/pbuilder/3905412/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3905412/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/fenics-dolfinx-0.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fenics-dolfinx_0.8.0-9_source.changes dpkg-buildpackage: info: source package fenics-dolfinx dpkg-buildpackage: info: source version 1:0.8.0-9 dpkg-buildpackage: info: source distribution unstable @@ -3101,7 +3137,7 @@ * DOLFINX_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. --- Configuring done (6.3s) +-- Configuring done (14.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -3222,7 +3258,7 @@ * DOLFINX_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. --- Configuring done (6.1s) +-- Configuring done (13.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -3243,7 +3279,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0' PETSC_DIR=/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real dh_auto_build --builddir=/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real - cd obj-x86_64-linux-gnu-real && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu-real && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/CMakeFiles /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real//CMakeFiles/progress.marks @@ -3255,85 +3291,85 @@ make[4]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real' make -f dolfinx/CMakeFiles/dolfinx.dir/build.make dolfinx/CMakeFiles/dolfinx.dir/build make[4]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real' -[ 2%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o -[ 9%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o -[ 9%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o -[ 9%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o -[ 16%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/DirichletBC.cpp.o -[ 16%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -[ 16%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o -[ 18%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o -[ 20%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o -[ 25%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/timing.cpp.o -[ 27%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o -[ 30%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o -[ 30%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/ElementDofLayout.cpp.o -[ 32%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/FiniteElement.cpp.o +[ 2%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -MF CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o.d -o CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/IndexMap.cpp +[ 4%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -DDOLFINX_GIT_COMMIT_HASH=\"debian_1:0.8.0-9\" -DUFCX_SIGNATURE=\"ea06373d6123e47e4a3c75d92f167503ae508922\" -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/defines.cpp.o -MF CMakeFiles/dolfinx.dir/common/defines.cpp.o.d -o CMakeFiles/dolfinx.dir/common/defines.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/defines.cpp +[ 6%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o -MF CMakeFiles/dolfinx.dir/common/log.cpp.o.d -o CMakeFiles/dolfinx.dir/common/log.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/log.cpp -[ 37%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/petsc.cpp.o -[ 37%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o +[ 9%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o +[ 11%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o -MF CMakeFiles/dolfinx.dir/common/MPI.cpp.o.d -o CMakeFiles/dolfinx.dir/common/MPI.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/MPI.cpp cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o -MF CMakeFiles/dolfinx.dir/common/Table.cpp.o.d -o CMakeFiles/dolfinx.dir/common/Table.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Table.cpp +[ 13%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o -MF CMakeFiles/dolfinx.dir/common/Timer.cpp.o.d -o CMakeFiles/dolfinx.dir/common/Timer.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Timer.cpp +[ 16%] Building CXX object 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dolfinx/CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o -MF CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o.d -o CMakeFiles/dolfinx.dir/io/vtk_utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/vtk_utils.cpp +[ 62%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/XDMFFile.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem 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-I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -MF CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o.d -o CMakeFiles/dolfinx.dir/refinement/plaza.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/plaza.cpp @@ -3349,7 +3385,7 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real' PETSC_DIR=/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex SLEPC_DIR=/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex dh_auto_build --builddir=/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex - cd obj-x86_64-linux-gnu-complex && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu-complex && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/CMakeFiles 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/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/log.cpp.o -MF CMakeFiles/dolfinx.dir/common/log.cpp.o.d -o CMakeFiles/dolfinx.dir/common/log.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/log.cpp -[ 32%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o -[ 34%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/petsc.cpp.o +[ 6%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/IndexMap.cpp.o +[ 6%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o +[ 9%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/DofMap.cpp.o +[ 11%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogManager.cpp.o +[ 16%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o +[ 16%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o +[ 20%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/MPI.cpp.o +[ 20%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/common/timing.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem 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/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/Table.cpp.o -MF CMakeFiles/dolfinx.dir/common/Table.cpp.o.d -o CMakeFiles/dolfinx.dir/common/Table.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Table.cpp +cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/Timer.cpp.o -MF CMakeFiles/dolfinx.dir/common/Timer.cpp.o.d -o CMakeFiles/dolfinx.dir/common/Timer.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/Timer.cpp +cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o -MF CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o.d -o CMakeFiles/dolfinx.dir/common/TimeLogger.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/TimeLogger.cpp cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK 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Building CXX object dolfinx/CMakeFiles/dolfinx.dir/fem/dofmapbuilder.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/common/timing.cpp.o 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-isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o -MF CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o.d -o CMakeFiles/dolfinx.dir/fem/CoordinateElement.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/CoordinateElement.cpp cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include 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/usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/ordering.cpp.o -MF CMakeFiles/dolfinx.dir/graph/ordering.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/ordering.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/ordering.cpp [ 48%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o +cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/graph/partition.cpp.o -MF CMakeFiles/dolfinx.dir/graph/partition.cpp.o.d -o CMakeFiles/dolfinx.dir/graph/partition.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/partition.cpp [ 51%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/ADIOS2Writers.cpp.o -[ 53%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/VTKFile.cpp.o -cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI 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55%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/HDF5Interface.cpp.o -[ 58%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/cells.cpp.o -[ 60%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/io/xdmf_function.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem 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/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/graphbuild.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/graphbuild.cpp +[ 86%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/mesh/permutationcomputation.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem 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dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -fpermissive -O2 -g -DNDEBUG -std=c++20 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT dolfinx/CMakeFiles/dolfinx.dir/mesh/utils.cpp.o -MF CMakeFiles/dolfinx.dir/mesh/utils.cpp.o.d -o CMakeFiles/dolfinx.dir/mesh/utils.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/utils.cpp [ 93%] Building CXX object dolfinx/CMakeFiles/dolfinx.dir/nls/NewtonSolver.cpp.o cd /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/dolfinx && /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Ddolfinx_EXPORTS -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -I/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/scotch -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem 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/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -c /usr/share/nanobind/src/nb_internals.cpp [ 8%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o @@ -3701,14 +3737,14 @@ /usr/bin/cmake -E cmake_link_script CMakeFiles/nanobind-static.dir/link.txt --verbose=1 /usr/bin/ar qc libnanobind-static.a "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o" 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/tmp/tmpvi27rw1h/build/CMakeFiles/cpp.dir/DependInfo.cmake "--color=" -gmake[4]: Leaving directory '/tmp/tmpvi27rw1h/build' +gmake[4]: Entering directory '/tmp/tmp0l3n0ugb/build' +cd /tmp/tmp0l3n0ugb/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/python /build/reproducible-path/fenics-dolfinx-0.8.0/python /tmp/tmp0l3n0ugb/build /tmp/tmp0l3n0ugb/build /tmp/tmp0l3n0ugb/build/CMakeFiles/cpp.dir/DependInfo.cmake "--color=" +gmake[4]: Leaving directory '/tmp/tmp0l3n0ugb/build' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build -gmake[4]: Entering directory '/tmp/tmpvi27rw1h/build' +gmake[4]: Entering directory '/tmp/tmp0l3n0ugb/build' [ 50%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/include/python3.12 -I/usr/share/nanobind/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -fno-stack-protector -ffunction-sections -fdata-sections -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/python/dolfinx/wrappers/dolfinx.cpp [ 54%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/assemble.cpp.o @@ -3736,16 +3772,16 @@ [100%] Linking CXX shared module cpp.cpython-312-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -O3 -DNDEBUG -Wl,-s -Wl,--gc-sections -Wl,-z,relro -shared -o cpp.cpython-312-x86_64-linux-gnu.so CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/assemble.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/petsc.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib: libnanobind-static.a /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/libpetsc_real.so -gmake[4]: Leaving directory '/tmp/tmpvi27rw1h/build' +gmake[4]: Leaving directory '/tmp/tmp0l3n0ugb/build' [100%] Built target cpp -gmake[3]: Leaving directory '/tmp/tmpvi27rw1h/build' -/usr/bin/cmake -E cmake_progress_start /tmp/tmpvi27rw1h/build/CMakeFiles 0 -gmake[2]: Leaving directory '/tmp/tmpvi27rw1h/build' +gmake[3]: Leaving directory '/tmp/tmp0l3n0ugb/build' +/usr/bin/cmake -E cmake_progress_start /tmp/tmp0l3n0ugb/build/CMakeFiles 0 +gmake[2]: Leaving directory '/tmp/tmp0l3n0ugb/build' *** Installing project into wheel... -- Install configuration: "Release" --- Installing: /tmp/tmpvi27rw1h/wheel/platlib/dolfinx/cpp.cpython-312-x86_64-linux-gnu.so --- Set non-toolchain portion of runtime path of "/tmp/tmpvi27rw1h/wheel/platlib/dolfinx/cpp.cpython-312-x86_64-linux-gnu.so" to "/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib" +-- Installing: /tmp/tmp0l3n0ugb/wheel/platlib/dolfinx/cpp.cpython-312-x86_64-linux-gnu.so +-- Set non-toolchain portion of runtime path of "/tmp/tmp0l3n0ugb/wheel/platlib/dolfinx/cpp.cpython-312-x86_64-linux-gnu.so" to "/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib" *** Making wheel... *** Created fenics_dolfinx-0.8.0-cp312-cp312-linux_x86_64.whl... Successfully built fenics_dolfinx-0.8.0-cp312-cp312-linux_x86_64.whl @@ -3888,33 +3924,33 @@ -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 20 durations ============================= -17.50s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh1] -10.58s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name0] -10.39s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name1] -6.59s call test/unit/fem/test_dofmap.py::test_block_size -6.53s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh0] -5.38s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] -4.92s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] -4.47s call test/unit/fem/test_complex_assembler.py::test_complex_assembly[complex64] -4.32s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[dx-Discontinuous Lagrange-3-4] -4.17s call test/unit/fem/test_assembler.py::test_assembly_solve_taylor_hood[mesh2] -4.12s call test/unit/fem/test_dof_permuting.py::test_integral[2-hexahedron-AAE] -3.95s call test/unit/fem/test_assemble_submesh.py::test_submesh_cell_assembly[GhostMode.none-Discontinuous Lagrange-1-2-2] -3.84s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] -3.84s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[ds-Discontinuous Lagrange-1-4] -3.81s call test/unit/fem/test_nonlinear_assembler.py::test_assembly_solve_taylor_hood_nl[mesh2] -3.66s call test/unit/fem/test_element_integrals.py::test_facet_normals[float32-CellType.hexahedron] -3.44s call test/unit/fem/test_dof_permuting.py::test_integral[2-hexahedron-NCE] -3.42s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[dS-Discontinuous Lagrange-1-4] -3.38s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[dx-Discontinuous Lagrange-1-4] -3.37s call test/unit/fem/test_element_integrals.py::test_facet_normals[complex128-CellType.hexahedron] -= 2178 passed, 95 skipped, 40 xfailed, 5 xpassed, 190 warnings in 1143.51s (0:19:03) = +49.85s call test/unit/fem/test_fem_pipeline.py::test_biharmonic[HHJ] +38.65s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh1] +36.91s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] +32.05s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] +30.20s call test/unit/fem/test_fem_pipeline.py::test_curl_curl_eigenvalue[1-N2curl] +26.81s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] +19.28s call test/unit/fem/test_fem_pipeline.py::test_biharmonic[Regge] +19.15s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCE-CellType.hexahedron] +18.68s call test/unit/fem/test_fem_pipeline.py::test_P_tp[4-Q-CellType.hexahedron] +18.26s call test/unit/fem/test_fem_pipeline.py::test_vector_P_tp[3-Q-CellType.hexahedron] +14.83s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name0] +14.74s call test/unit/fem/test_fem_pipeline.py::test_vector_S_tp[3-S-CellType.hexahedron] +14.57s call test/unit/fem/test_fem_pipeline.py::test_DPC_quad[2-DPC-CellType.quadrilateral] +14.54s call test/unit/fem/test_fem_pipeline.py::test_AA_hex[3-AAE-CellType.hexahedron] +13.44s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCF-CellType.hexahedron] +13.36s call test/unit/fem/test_fem_pipeline.py::test_S_tp[4-S-CellType.hexahedron] +13.35s call test/unit/fem/test_fem_pipeline.py::test_AA_hex[3-AAF-CellType.hexahedron] +13.06s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name1] +12.68s call test/unit/fem/test_dofmap.py::test_block_size +12.22s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh0] += 2178 passed, 95 skipped, 40 xfailed, 5 xpassed, 190 warnings in 3156.87s (0:52:36) = I: pybuild plugin_pyproject:129: Building wheel for python3.11 with "build" module I: pybuild base:311: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.11_dolfinx-real * Building wheel... *** scikit-build-core 0.9.4 using CMake 3.29.4 (wheel) *** Configuring CMake... -loading initial cache file /tmp/tmputjsd5sf/build/CMakeInit.txt +loading initial cache file /tmp/tmp8iazdjh1/build/CMakeInit.txt Re-run cmake no build system arguments -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 @@ -3968,24 +4004,24 @@ -- Found DOLFINx at /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/cmake/dolfinx -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include --- Configuring done (4.5s) +-- Configuring done (8.9s) -- Generating done (0.0s) --- Build files have been written to: /tmp/tmputjsd5sf/build +-- Build files have been written to: /tmp/tmp8iazdjh1/build *** Building project with Unix Makefiles... -Change Dir: '/tmp/tmputjsd5sf/build' +Change Dir: '/tmp/tmp8iazdjh1/build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -gmake[2]: Entering directory '/tmp/tmputjsd5sf/build' -/usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/python -B/tmp/tmputjsd5sf/build --check-build-system CMakeFiles/Makefile.cmake 0 -/usr/bin/cmake -E cmake_progress_start /tmp/tmputjsd5sf/build/CMakeFiles /tmp/tmputjsd5sf/build//CMakeFiles/progress.marks +gmake[2]: Entering directory '/tmp/tmp8iazdjh1/build' +/usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/python -B/tmp/tmp8iazdjh1/build --check-build-system CMakeFiles/Makefile.cmake 0 +/usr/bin/cmake -E cmake_progress_start /tmp/tmp8iazdjh1/build/CMakeFiles /tmp/tmp8iazdjh1/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all -gmake[3]: Entering directory '/tmp/tmputjsd5sf/build' +gmake[3]: Entering directory '/tmp/tmp8iazdjh1/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend -gmake[4]: Entering directory '/tmp/tmputjsd5sf/build' -cd /tmp/tmputjsd5sf/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/python /build/reproducible-path/fenics-dolfinx-0.8.0/python /tmp/tmputjsd5sf/build /tmp/tmputjsd5sf/build /tmp/tmputjsd5sf/build/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" -gmake[4]: Leaving directory '/tmp/tmputjsd5sf/build' +gmake[4]: Entering directory '/tmp/tmp8iazdjh1/build' +cd /tmp/tmp8iazdjh1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/python /build/reproducible-path/fenics-dolfinx-0.8.0/python /tmp/tmp8iazdjh1/build /tmp/tmp8iazdjh1/build /tmp/tmp8iazdjh1/build/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" +gmake[4]: Leaving directory '/tmp/tmp8iazdjh1/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/build -gmake[4]: Entering directory '/tmp/tmputjsd5sf/build' +gmake[4]: Entering directory '/tmp/tmp8iazdjh1/build' [ 4%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o /usr/bin/c++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.11 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -c /usr/share/nanobind/src/nb_internals.cpp [ 8%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o @@ -4011,14 +4047,14 @@ /usr/bin/cmake -E cmake_link_script CMakeFiles/nanobind-static.dir/link.txt --verbose=1 /usr/bin/ar qc libnanobind-static.a "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o" 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-E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/python /build/reproducible-path/fenics-dolfinx-0.8.0/python /tmp/tmputjsd5sf/build /tmp/tmputjsd5sf/build /tmp/tmputjsd5sf/build/CMakeFiles/cpp.dir/DependInfo.cmake "--color=" -gmake[4]: Leaving directory '/tmp/tmputjsd5sf/build' +gmake[4]: Entering directory '/tmp/tmp8iazdjh1/build' +cd /tmp/tmp8iazdjh1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/python /build/reproducible-path/fenics-dolfinx-0.8.0/python /tmp/tmp8iazdjh1/build /tmp/tmp8iazdjh1/build /tmp/tmp8iazdjh1/build/CMakeFiles/cpp.dir/DependInfo.cmake "--color=" +gmake[4]: Leaving directory '/tmp/tmp8iazdjh1/build' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build -gmake[4]: Entering directory '/tmp/tmputjsd5sf/build' +gmake[4]: Entering directory '/tmp/tmp8iazdjh1/build' [ 50%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/include/python3.11 -I/usr/share/nanobind/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -fno-stack-protector -ffunction-sections -fdata-sections -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/python/dolfinx/wrappers/dolfinx.cpp [ 54%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/assemble.cpp.o @@ -4046,16 +4082,16 @@ [100%] Linking CXX shared module cpp.cpython-311-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/include -O3 -DNDEBUG -Wl,-s -Wl,--gc-sections -Wl,-z,relro -shared -o cpp.cpython-311-x86_64-linux-gnu.so CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/assemble.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/petsc.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib: libnanobind-static.a /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu/libdolfinx_real.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/libpetsc_real.so -gmake[4]: Leaving directory '/tmp/tmputjsd5sf/build' +gmake[4]: Leaving directory '/tmp/tmp8iazdjh1/build' [100%] Built target cpp -gmake[3]: Leaving directory '/tmp/tmputjsd5sf/build' -/usr/bin/cmake -E cmake_progress_start /tmp/tmputjsd5sf/build/CMakeFiles 0 -gmake[2]: Leaving directory '/tmp/tmputjsd5sf/build' +gmake[3]: Leaving directory '/tmp/tmp8iazdjh1/build' +/usr/bin/cmake -E cmake_progress_start /tmp/tmp8iazdjh1/build/CMakeFiles 0 +gmake[2]: Leaving directory '/tmp/tmp8iazdjh1/build' *** Installing project into wheel... -- Install configuration: "Release" --- Installing: /tmp/tmputjsd5sf/wheel/platlib/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so --- Set non-toolchain portion of runtime path of "/tmp/tmputjsd5sf/wheel/platlib/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so" to "/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib" +-- Installing: /tmp/tmp8iazdjh1/wheel/platlib/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so +-- Set non-toolchain portion of runtime path of "/tmp/tmp8iazdjh1/wheel/platlib/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so" to "/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-real/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib" *** Making wheel... *** Created fenics_dolfinx-0.8.0-cp311-cp311-linux_x86_64.whl... Successfully built fenics_dolfinx-0.8.0-cp311-cp311-linux_x86_64.whl @@ -4198,29 +4234,29 @@ -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 20 durations ============================= -15.24s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh1] -14.00s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] -10.82s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name0] -10.81s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name1] -10.06s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] -9.71s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] -7.95s call test/unit/fem/test_nonlinear_assembler.py::test_assembly_solve_taylor_hood_nl[mesh2] -7.01s call test/unit/fem/test_fem_pipeline.py::test_biharmonic[HHJ] -6.88s call test/unit/fem/test_element_integrals.py::test_facet_normals[complex128-CellType.hexahedron] -6.21s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[3-DG-CellType.tetrahedron] -5.79s call test/unit/fem/test_fem_pipeline.py::test_P_tp[4-Q-CellType.hexahedron] -5.61s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[2-DG-CellType.tetrahedron] -5.44s call test/unit/fem/test_fem_pipeline.py::test_biharmonic[Regge] -5.42s call test/unit/fem/test_fem_pipeline.py::test_vector_P_tp[3-Q-CellType.hexahedron] -5.26s call test/unit/fem/test_interpolation.py::test_interpolation_non_affine_nonmatching_maps -4.91s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[ds-Lagrange-3-4] -4.79s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh0] -4.52s call test/unit/fem/test_dofmap.py::test_block_size -4.48s call test/unit/fem/test_nonlinear_assembler.py::test_matrix_assembly_block_nl -4.09s call test/unit/fem/test_mixed_element.py::test_mixed_element[1-N1curl-2-cell0] -= 2178 passed, 95 skipped, 40 xfailed, 5 xpassed, 190 warnings in 1510.47s (0:25:10) = +26.06s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh1] +19.06s call test/unit/fem/test_element_integrals.py::test_facet_normals[complex128-CellType.hexahedron] +14.67s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name1] +12.74s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name0] +12.52s call test/unit/fem/test_element_integrals.py::test_facet_integral[complex64-CellType.hexahedron] +12.06s call test/unit/fem/test_element_integrals.py::test_facet_normals[float64-CellType.hexahedron] +11.61s call test/unit/fem/test_dofmap.py::test_block_size +11.33s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] +11.16s call test/unit/fem/test_element_integrals.py::test_facet_integral[complex128-CellType.hexahedron] +11.14s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] +10.86s call test/unit/fem/test_element_integrals.py::test_facet_normals[float32-CellType.hexahedron] +8.88s call test/unit/fem/test_element_integrals.py::test_facet_normals[complex64-CellType.hexahedron] +8.26s call test/unit/fem/test_element_integrals.py::test_facet_normals[float32-CellType.tetrahedron] +8.02s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh0] +7.77s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] +7.71s call test/unit/fem/test_nonlinear_assembler.py::test_assembly_solve_taylor_hood_nl[mesh2] +7.40s call test/unit/fem/test_element_integrals.py::test_facet_normals[float32-CellType.quadrilateral] +7.17s call test/unit/fem/test_dof_permuting.py::test_integral[2-hexahedron-AAE] +6.96s call test/unit/fem/test_element_integrals.py::test_facet_normals[complex128-CellType.quadrilateral] +6.92s call test/unit/fem/test_element_integrals.py::test_plus_minus[float64-CellType.hexahedron-DG] += 2178 passed, 95 skipped, 40 xfailed, 5 xpassed, 190 warnings in 2231.67s (0:37:11) = dh_auto_install -a --builddir=/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex --destdir=debian/tmp-complex - cd obj-x86_64-linux-gnu-complex && make -j42 install DESTDIR=/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu-complex && make -j20 install DESTDIR=/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4358,7 +4394,7 @@ * Building wheel... *** scikit-build-core 0.9.4 using CMake 3.29.4 (wheel) *** Configuring CMake... -loading initial cache file /tmp/tmpzz9sy8jm/build/CMakeInit.txt +loading initial cache file /tmp/tmpyc2ntrwa/build/CMakeInit.txt Re-run cmake no build system arguments -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 @@ -4412,24 +4448,24 @@ -- Found DOLFINx at /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include --- Configuring done (5.8s) +-- Configuring done (7.1s) -- Generating done (0.0s) --- Build files have been written to: /tmp/tmpzz9sy8jm/build +-- Build files have been written to: /tmp/tmpyc2ntrwa/build *** Building project with Unix Makefiles... -Change Dir: '/tmp/tmpzz9sy8jm/build' +Change Dir: '/tmp/tmpyc2ntrwa/build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -gmake[2]: Entering directory '/tmp/tmpzz9sy8jm/build' -/usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/python -B/tmp/tmpzz9sy8jm/build --check-build-system CMakeFiles/Makefile.cmake 0 -/usr/bin/cmake -E cmake_progress_start /tmp/tmpzz9sy8jm/build/CMakeFiles /tmp/tmpzz9sy8jm/build//CMakeFiles/progress.marks +gmake[2]: Entering directory '/tmp/tmpyc2ntrwa/build' +/usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/python -B/tmp/tmpyc2ntrwa/build --check-build-system CMakeFiles/Makefile.cmake 0 +/usr/bin/cmake -E cmake_progress_start /tmp/tmpyc2ntrwa/build/CMakeFiles /tmp/tmpyc2ntrwa/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all -gmake[3]: Entering directory '/tmp/tmpzz9sy8jm/build' +gmake[3]: Entering directory '/tmp/tmpyc2ntrwa/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend -gmake[4]: Entering directory '/tmp/tmpzz9sy8jm/build' -cd /tmp/tmpzz9sy8jm/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/python /build/reproducible-path/fenics-dolfinx-0.8.0/python /tmp/tmpzz9sy8jm/build /tmp/tmpzz9sy8jm/build /tmp/tmpzz9sy8jm/build/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" -gmake[4]: Leaving directory '/tmp/tmpzz9sy8jm/build' +gmake[4]: Entering directory '/tmp/tmpyc2ntrwa/build' +cd /tmp/tmpyc2ntrwa/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/python /build/reproducible-path/fenics-dolfinx-0.8.0/python /tmp/tmpyc2ntrwa/build /tmp/tmpyc2ntrwa/build /tmp/tmpyc2ntrwa/build/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" +gmake[4]: Leaving directory '/tmp/tmpyc2ntrwa/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/build -gmake[4]: Entering directory '/tmp/tmpzz9sy8jm/build' +gmake[4]: Entering directory '/tmp/tmpyc2ntrwa/build' [ 4%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o /usr/bin/c++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.12 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -c /usr/share/nanobind/src/nb_internals.cpp [ 8%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o @@ -4455,14 +4491,14 @@ /usr/bin/cmake -E cmake_link_script CMakeFiles/nanobind-static.dir/link.txt --verbose=1 /usr/bin/ar qc libnanobind-static.a "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o" "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o" /usr/bin/ranlib libnanobind-static.a -gmake[4]: Leaving directory '/tmp/tmpzz9sy8jm/build' +gmake[4]: Leaving directory '/tmp/tmpyc2ntrwa/build' [ 45%] Built target nanobind-static /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend -gmake[4]: Entering directory '/tmp/tmpzz9sy8jm/build' -cd /tmp/tmpzz9sy8jm/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/python /build/reproducible-path/fenics-dolfinx-0.8.0/python /tmp/tmpzz9sy8jm/build /tmp/tmpzz9sy8jm/build /tmp/tmpzz9sy8jm/build/CMakeFiles/cpp.dir/DependInfo.cmake "--color=" -gmake[4]: Leaving directory '/tmp/tmpzz9sy8jm/build' +gmake[4]: Entering directory '/tmp/tmpyc2ntrwa/build' +cd /tmp/tmpyc2ntrwa/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/python /build/reproducible-path/fenics-dolfinx-0.8.0/python /tmp/tmpyc2ntrwa/build /tmp/tmpyc2ntrwa/build /tmp/tmpyc2ntrwa/build/CMakeFiles/cpp.dir/DependInfo.cmake "--color=" +gmake[4]: Leaving directory '/tmp/tmpyc2ntrwa/build' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build -gmake[4]: Entering directory '/tmp/tmpzz9sy8jm/build' +gmake[4]: Entering directory '/tmp/tmpyc2ntrwa/build' [ 50%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o /usr/bin/c++ -DADIOS2_USE_MPI -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DDOLFINX_VERSION=\"0.8.0\" -DHAS_ADIOS2 -DHAS_PETSC -DHAS_PTSCOTCH -DHAS_SLEPC -Dcpp_EXPORTS -I/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/include/python3.12 -I/usr/share/nanobind/include -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/hdf5/openmpi -isystem /usr/include/adios2/build/mpi -isystem /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/include -isystem /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -fno-stack-protector -ffunction-sections -fdata-sections -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/python/dolfinx/wrappers/dolfinx.cpp [ 54%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/assemble.cpp.o @@ -4490,16 +4526,16 @@ [100%] Linking CXX shared module cpp.cpython-312-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -Wl,-s -Wl,--gc-sections -Wl,-z,relro -shared -o cpp.cpython-312-x86_64-linux-gnu.so CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/assemble.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/petsc.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib: libnanobind-static.a /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/libpetsc_complex.so -gmake[4]: Leaving directory '/tmp/tmpzz9sy8jm/build' +gmake[4]: Leaving directory '/tmp/tmpyc2ntrwa/build' [100%] Built target cpp -gmake[3]: Leaving directory '/tmp/tmpzz9sy8jm/build' -/usr/bin/cmake -E cmake_progress_start /tmp/tmpzz9sy8jm/build/CMakeFiles 0 -gmake[2]: Leaving directory '/tmp/tmpzz9sy8jm/build' +gmake[3]: Leaving directory '/tmp/tmpyc2ntrwa/build' +/usr/bin/cmake -E cmake_progress_start /tmp/tmpyc2ntrwa/build/CMakeFiles 0 +gmake[2]: Leaving directory '/tmp/tmpyc2ntrwa/build' *** Installing project into wheel... -- Install configuration: "Release" --- Installing: /tmp/tmpzz9sy8jm/wheel/platlib/dolfinx/cpp.cpython-312-x86_64-linux-gnu.so --- Set non-toolchain portion of runtime path of "/tmp/tmpzz9sy8jm/wheel/platlib/dolfinx/cpp.cpython-312-x86_64-linux-gnu.so" to "/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib" +-- Installing: /tmp/tmpyc2ntrwa/wheel/platlib/dolfinx/cpp.cpython-312-x86_64-linux-gnu.so +-- Set non-toolchain portion of runtime path of "/tmp/tmpyc2ntrwa/wheel/platlib/dolfinx/cpp.cpython-312-x86_64-linux-gnu.so" to "/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib" *** Making wheel... *** Created fenics_dolfinx-0.8.0-cp312-cp312-linux_x86_64.whl... Successfully built fenics_dolfinx-0.8.0-cp312-cp312-linux_x86_64.whl @@ -4651,33 +4687,33 @@ -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 20 durations ============================= -42.80s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh1] -10.58s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name0] -10.55s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name1] -9.64s call test/unit/fem/test_dofmap.py::test_block_size -6.77s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[dx-Discontinuous Lagrange-1-4] -5.87s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh0] -5.80s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] -5.47s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[dS-Discontinuous Lagrange-1-4] -5.27s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] -5.24s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[dS-Lagrange-3-4] -4.89s call test/unit/fem/test_assembler.py::test_assembly_solve_taylor_hood[mesh2] -4.88s call test/unit/fem/test_element_integrals.py::test_facet_integral[float32-CellType.hexahedron] -4.86s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[dx-Discontinuous Lagrange-3-4] -4.80s call test/unit/fem/test_element_integrals.py::test_facet_integral[float64-CellType.hexahedron] -4.71s call test/unit/fem/test_element_integrals.py::test_facet_normals[complex128-CellType.hexahedron] -4.62s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[dS-Lagrange-1-4] -4.61s call test/unit/fem/test_element_integrals.py::test_facet_normals[complex64-CellType.hexahedron] -4.60s call test/unit/fem/test_nonlinear_assembler.py::test_assembly_solve_taylor_hood_nl[mesh2] -4.37s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[1-NCE-CellType.hexahedron] -4.14s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] -= 2176 passed, 97 skipped, 40 xfailed, 5 xpassed, 183 warnings in 1203.43s (0:20:03) = +33.96s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh1] +18.88s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[3-DG-CellType.tetrahedron] +15.39s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[2-DG-CellType.tetrahedron] +13.96s call test/unit/la/test_nullspace.py::test_nullspace_check[2-mesh1] +13.66s call test/unit/fem/test_dofmap.py::test_block_size +13.09s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] +12.30s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name0] +11.80s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name1] +10.73s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] +9.78s call test/unit/la/test_nullspace.py::test_nullspace_check[1-mesh1] +9.27s call test/unit/fem/test_nonlinear_assembler.py::test_assembly_solve_taylor_hood_nl[mesh2] +9.07s call test/unit/fem/test_fem_pipeline.py::test_curl_curl_eigenvalue[1-N2curl] +9.05s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh0] +8.52s call test/unit/fem/test_assembler.py::test_assembly_solve_taylor_hood[mesh2] +8.10s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCE-CellType.hexahedron] +7.77s call test/unit/fem/test_fem_pipeline.py::test_vector_P_simplex[3-Lagrange-CellType.tetrahedron] +7.75s call test/unit/fem/test_fem_pipeline.py::test_P_tp[4-Q-CellType.hexahedron] +7.36s call test/unit/fem/test_fem_pipeline.py::test_RT_N1curl_simplex[3-N1curl-CellType.tetrahedron] +7.25s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] +7.22s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[2-DG-CellType.triangle] += 2176 passed, 97 skipped, 40 xfailed, 5 xpassed, 183 warnings in 2444.85s (0:40:44) = I: pybuild plugin_pyproject:129: Building wheel for python3.11 with "build" module I: pybuild base:311: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/fenics-dolfinx-0.8.0/.pybuild/cpython3_3.11_dolfinx-complex * Building wheel... *** scikit-build-core 0.9.4 using CMake 3.29.4 (wheel) *** Configuring CMake... -loading initial cache file /tmp/tmpii9l3jhb/build/CMakeInit.txt +loading initial cache file /tmp/tmpotna123g/build/CMakeInit.txt Re-run cmake no build system arguments -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 @@ -4731,24 +4767,24 @@ -- Found DOLFINx at /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/cmake/dolfinx -- Found petsc4py include directory at /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/python3/dist-packages/petsc4py/include -- Found mpi4py include directory at /usr/lib/python3/dist-packages/mpi4py/include --- Configuring done (4.5s) +-- Configuring done (19.9s) -- Generating done (0.0s) --- Build files have been written to: /tmp/tmpii9l3jhb/build +-- Build files have been written to: /tmp/tmpotna123g/build *** Building project with Unix Makefiles... -Change Dir: '/tmp/tmpii9l3jhb/build' +Change Dir: '/tmp/tmpotna123g/build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -gmake[2]: Entering directory '/tmp/tmpii9l3jhb/build' -/usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/python -B/tmp/tmpii9l3jhb/build --check-build-system CMakeFiles/Makefile.cmake 0 -/usr/bin/cmake -E cmake_progress_start /tmp/tmpii9l3jhb/build/CMakeFiles /tmp/tmpii9l3jhb/build//CMakeFiles/progress.marks +gmake[2]: Entering directory '/tmp/tmpotna123g/build' +/usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/python -B/tmp/tmpotna123g/build --check-build-system CMakeFiles/Makefile.cmake 0 +/usr/bin/cmake -E cmake_progress_start /tmp/tmpotna123g/build/CMakeFiles /tmp/tmpotna123g/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all -gmake[3]: Entering directory '/tmp/tmpii9l3jhb/build' +gmake[3]: Entering directory '/tmp/tmpotna123g/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend -gmake[4]: Entering directory '/tmp/tmpii9l3jhb/build' -cd /tmp/tmpii9l3jhb/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/python /build/reproducible-path/fenics-dolfinx-0.8.0/python /tmp/tmpii9l3jhb/build /tmp/tmpii9l3jhb/build /tmp/tmpii9l3jhb/build/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" -gmake[4]: Leaving directory '/tmp/tmpii9l3jhb/build' +gmake[4]: Entering directory '/tmp/tmpotna123g/build' +cd /tmp/tmpotna123g/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/fenics-dolfinx-0.8.0/python /build/reproducible-path/fenics-dolfinx-0.8.0/python /tmp/tmpotna123g/build /tmp/tmpotna123g/build /tmp/tmpotna123g/build/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" +gmake[4]: Leaving directory '/tmp/tmpotna123g/build' /usr/bin/gmake -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/build -gmake[4]: Entering directory '/tmp/tmpii9l3jhb/build' +gmake[4]: Entering directory '/tmp/tmpotna123g/build' [ 4%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o /usr/bin/c++ -DNB_COMPACT_ASSERTIONS -I/usr/include/python3.11 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -ffunction-sections -fdata-sections -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -c /usr/share/nanobind/src/nb_internals.cpp [ 8%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o @@ -4774,14 +4810,14 @@ /usr/bin/cmake -E cmake_link_script CMakeFiles/nanobind-static.dir/link.txt --verbose=1 /usr/bin/ar qc libnanobind-static.a "CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o" 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-O3 -DNDEBUG -std=c++20 -fPIC -fvisibility=hidden -fno-stack-protector -ffunction-sections -fdata-sections -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -MF CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o.d -o CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o -c /build/reproducible-path/fenics-dolfinx-0.8.0/python/dolfinx/wrappers/dolfinx.cpp [ 54%] Building CXX object CMakeFiles/cpp.dir/dolfinx/wrappers/assemble.cpp.o @@ -4809,16 +4845,16 @@ [100%] Linking CXX shared module cpp.cpython-311-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/fenics-dolfinx-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -isystem /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/include -O3 -DNDEBUG -Wl,-s -Wl,--gc-sections -Wl,-z,relro -shared -o cpp.cpython-311-x86_64-linux-gnu.so CMakeFiles/cpp.dir/dolfinx/wrappers/dolfinx.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/assemble.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/common.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/fem.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/geometry.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/graph.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/io.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/la.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/log.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/mesh.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/petsc.cpp.o CMakeFiles/cpp.dir/dolfinx/wrappers/refinement.cpp.o -Wl,-rpath,/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib: libnanobind-static.a /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu/libdolfinx_complex.so.0.8.0 /usr/lib/x86_64-linux-gnu/libpugixml.so.1.14 /usr/lib/x86_64-linux-gnu/libbasix.so.0.8.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11_mpi.so.2.9.2 /usr/lib/x86_64-linux-gnu/libadios2_mpi_cxx11.so.2.9.2 /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib/libslepc_complex.so /usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/libpetsc_complex.so -gmake[4]: Leaving directory '/tmp/tmpii9l3jhb/build' +gmake[4]: Leaving directory '/tmp/tmpotna123g/build' [100%] Built target cpp -gmake[3]: Leaving directory '/tmp/tmpii9l3jhb/build' -/usr/bin/cmake -E cmake_progress_start /tmp/tmpii9l3jhb/build/CMakeFiles 0 -gmake[2]: Leaving directory '/tmp/tmpii9l3jhb/build' +gmake[3]: Leaving directory '/tmp/tmpotna123g/build' +/usr/bin/cmake -E cmake_progress_start /tmp/tmpotna123g/build/CMakeFiles 0 +gmake[2]: Leaving directory '/tmp/tmpotna123g/build' *** Installing project into wheel... -- Install configuration: "Release" --- Installing: /tmp/tmpii9l3jhb/wheel/platlib/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so --- Set non-toolchain portion of runtime path of "/tmp/tmpii9l3jhb/wheel/platlib/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so" to "/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib" +-- Installing: /tmp/tmpotna123g/wheel/platlib/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so +-- Set non-toolchain portion of runtime path of "/tmp/tmpotna123g/wheel/platlib/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so" to "/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu/openmpi/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/x86_64-linux-gnu-complex/lib:/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib" *** Making wheel... *** Created fenics_dolfinx-0.8.0-cp311-cp311-linux_x86_64.whl... Successfully built fenics_dolfinx-0.8.0-cp311-cp311-linux_x86_64.whl @@ -4970,27 +5006,27 @@ -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 20 durations ============================= -20.43s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh1] -10.64s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name0] -10.52s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name1] -6.20s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] -6.07s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[dS-Discontinuous Lagrange-1-4] -6.00s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh0] -5.93s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[dS-Lagrange-1-4] -5.50s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] -5.42s call test/unit/fem/test_assembler.py::test_assembly_solve_taylor_hood[mesh0] -4.85s call test/unit/fem/test_assembler.py::test_assembly_solve_taylor_hood[mesh2] -4.66s call test/unit/fem/test_nonlinear_assembler.py::test_assembly_solve_taylor_hood_nl[mesh2] -4.56s call test/unit/fem/test_dofmap.py::test_block_size -4.45s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] -4.19s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[dx-Discontinuous Lagrange-1-4] -4.19s call test/unit/fem/test_assemble_submesh.py::test_mixed_dom_codim_0[dS-Lagrange-3-4] -4.14s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[3-DG-CellType.tetrahedron] -4.12s call test/unit/fem/test_fem_pipeline.py::test_curl_curl_eigenvalue[1-N2curl] -4.06s call test/unit/fem/test_fem_pipeline.py::test_P_tp[4-Q-CellType.hexahedron] -3.96s call test/unit/la/test_nullspace.py::test_nullspace_check[2-mesh1] -3.93s call test/unit/fem/test_fem_pipeline.py::test_NC_hex[3-NCE-CellType.hexahedron] -= 2176 passed, 97 skipped, 40 xfailed, 5 xpassed, 183 warnings in 1168.65s (0:19:28) = +41.19s call test/unit/fem/test_fem_pipeline.py::test_DPC_hex[2-DPC-CellType.hexahedron] +34.83s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh1] +32.44s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[2-DQ-CellType.hexahedron] +30.63s call test/unit/fem/test_fem_pipeline.py::test_dP_hex[1-DQ-CellType.hexahedron] +14.01s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name0] +13.47s call test/debian-only/test_pusimp.py::test_dolfinx_import_errors_with_broken_non_optional_packages[dependencies_import_name1] +11.62s call test/unit/fem/test_fem_pipeline.py::test_S_tp[4-S-CellType.hexahedron] +11.34s call test/unit/fem/test_fem_pipeline.py::test_dP_simplex[3-DG-CellType.tetrahedron] +11.24s call test/unit/fem/test_fem_pipeline.py::test_dP_quad[3-DQ-CellType.quadrilateral] +10.99s call test/unit/fem/test_fem_pipeline.py::test_vector_S_tp[3-S-CellType.hexahedron] +10.59s call test/unit/fem/test_fem_pipeline.py::test_dP_quad[1-DQ-CellType.quadrilateral] +9.77s call test/unit/fem/test_assembler.py::test_symmetry_interior_facet_assembly[mesh0] +9.62s call test/unit/fem/test_fem_pipeline.py::test_AA_hex[3-AAE-CellType.hexahedron] +9.59s call test/unit/fem/test_assembler.py::test_assembly_solve_taylor_hood[mesh2] +9.47s call test/unit/fem/test_nonlinear_assembler.py::test_assembly_solve_taylor_hood_nl[mesh2] +9.36s call test/unit/fem/test_dof_permuting.py::test_integral[1-hexahedron-AAE] +8.96s call test/unit/fem/test_fem_pipeline.py::test_DPC_quad[4-DPC-CellType.quadrilateral] +8.91s call test/unit/fem/test_fem_pipeline.py::test_curl_curl_eigenvalue[1-N2curl] +8.89s call test/unit/fem/test_fem_pipeline.py::test_dP_quad[2-DQ-CellType.quadrilateral] +8.64s call test/unit/fem/test_dofmap.py::test_block_size += 2176 passed, 97 skipped, 40 xfailed, 5 xpassed, 183 warnings in 2616.48s (0:43:36) = chrpath -d /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp*/usr/lib/python*/dist-packages/dolfinx/*.so sed -i "s/-D_FORTIFY_SOURCE=2//g" /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp*/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx*.pc sed -i "s|-DNDEBUG||g" /build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp*/usr/lib/x86_64-linux-gnu/pkgconfig/dolfinx*.pc @@ -5068,7 +5104,7 @@ -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.9.2", minimum required is "2.8.1") found components: CXX --- Configuring done (4.2s) +-- Configuring done (6.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -5123,11 +5159,11 @@ /usr/bin/ctest --force-new-ctest-process Test project /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test Start 1: unittests -1/1 Test #1: unittests ........................ Passed 0.90 sec +1/1 Test #1: unittests ........................ Passed 1.21 sec 100% tests passed, 0 tests failed out of 1 -Total Test time (real) = 0.90 sec +Total Test time (real) = 1.21 sec make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_test' running tests from demo for real build -- The C compiler identification is GNU 13.2.0 @@ -5181,7 +5217,7 @@ -- Performing Test HAVE_NO_MULTLINE - Success -- Looking for PETSC_USE_REAL_DOUBLE -- Looking for PETSC_USE_REAL_DOUBLE - found --- Configuring done (4.0s) +-- Configuring done (6.8s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' @@ -5304,51 +5340,51 @@ /usr/bin/ctest --force-new-ctest-process Test project /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo Start 1: demo_custom_kernel_mpi_2 - 1/21 Test #1: demo_custom_kernel_mpi_2 ..................... Passed 1.19 sec + 1/21 Test #1: demo_custom_kernel_mpi_2 ..................... Passed 1.75 sec Start 2: demo_custom_kernel_mpi_3 - 2/21 Test #2: demo_custom_kernel_mpi_3 ..................... Passed 1.05 sec + 2/21 Test #2: demo_custom_kernel_mpi_3 ..................... Passed 1.82 sec Start 3: demo_custom_kernel_serial - 3/21 Test #3: demo_custom_kernel_serial .................... Passed 1.10 sec + 3/21 Test #3: demo_custom_kernel_serial .................... Passed 1.46 sec Start 4: demo_poisson_mpi_2 - 4/21 Test #4: demo_poisson_mpi_2 ........................... Passed 0.59 sec + 4/21 Test #4: demo_poisson_mpi_2 ........................... Passed 0.84 sec Start 5: demo_poisson_mpi_3 - 5/21 Test #5: demo_poisson_mpi_3 ........................... Passed 0.60 sec + 5/21 Test #5: demo_poisson_mpi_3 ........................... Passed 1.12 sec Start 6: demo_poisson_serial - 6/21 Test #6: demo_poisson_serial .......................... Passed 0.54 sec + 6/21 Test #6: demo_poisson_serial .......................... Passed 0.83 sec Start 7: demo_poisson_matrix_free_mpi_2 - 7/21 Test #7: demo_poisson_matrix_free_mpi_2 ............... Passed 0.57 sec + 7/21 Test #7: demo_poisson_matrix_free_mpi_2 ............... Passed 0.65 sec Start 8: demo_poisson_matrix_free_mpi_3 - 8/21 Test #8: demo_poisson_matrix_free_mpi_3 ............... Passed 0.54 sec + 8/21 Test #8: demo_poisson_matrix_free_mpi_3 ............... Passed 0.72 sec Start 9: demo_poisson_matrix_free_serial - 9/21 Test #9: demo_poisson_matrix_free_serial .............. Passed 0.53 sec + 9/21 Test #9: demo_poisson_matrix_free_serial .............. Passed 0.70 sec Start 10: demo_hyperelasticity_mpi_2 -10/21 Test #10: demo_hyperelasticity_mpi_2 ................... Passed 1.31 sec +10/21 Test #10: demo_hyperelasticity_mpi_2 ................... Passed 2.36 sec Start 11: demo_hyperelasticity_mpi_3 -11/21 Test #11: demo_hyperelasticity_mpi_3 ................... Passed 1.81 sec +11/21 Test #11: demo_hyperelasticity_mpi_3 ................... Passed 3.81 sec Start 12: demo_hyperelasticity_serial -12/21 Test #12: demo_hyperelasticity_serial .................. Passed 1.29 sec +12/21 Test #12: demo_hyperelasticity_serial .................. Passed 1.99 sec Start 13: demo_interpolation-io_mpi_2 -13/21 Test #13: demo_interpolation-io_mpi_2 .................. Passed 0.63 sec +13/21 Test #13: demo_interpolation-io_mpi_2 .................. Passed 0.73 sec Start 14: demo_interpolation-io_mpi_3 -14/21 Test #14: demo_interpolation-io_mpi_3 .................. Passed 0.64 sec +14/21 Test #14: demo_interpolation-io_mpi_3 .................. Passed 0.78 sec Start 15: demo_interpolation-io_serial -15/21 Test #15: demo_interpolation-io_serial ................. Passed 0.62 sec +15/21 Test #15: demo_interpolation-io_serial ................. Passed 0.76 sec Start 16: demo_interpolation_different_meshes_mpi_2 -16/21 Test #16: demo_interpolation_different_meshes_mpi_2 .... Passed 0.94 sec +16/21 Test #16: demo_interpolation_different_meshes_mpi_2 .... Passed 1.44 sec Start 17: demo_interpolation_different_meshes_mpi_3 -17/21 Test #17: demo_interpolation_different_meshes_mpi_3 .... Passed 9.00 sec +17/21 Test #17: demo_interpolation_different_meshes_mpi_3 .... Passed 11.32 sec Start 18: demo_interpolation_different_meshes_serial -18/21 Test #18: demo_interpolation_different_meshes_serial ... Passed 1.09 sec +18/21 Test #18: demo_interpolation_different_meshes_serial ... Passed 1.80 sec Start 19: demo_biharmonic_mpi_2 -19/21 Test #19: demo_biharmonic_mpi_2 ........................ Passed 0.71 sec +19/21 Test #19: demo_biharmonic_mpi_2 ........................ Passed 0.86 sec Start 20: demo_biharmonic_mpi_3 -20/21 Test #20: demo_biharmonic_mpi_3 ........................ Passed 0.69 sec +20/21 Test #20: demo_biharmonic_mpi_3 ........................ Passed 0.86 sec Start 21: demo_biharmonic_serial -21/21 Test #21: demo_biharmonic_serial ....................... Passed 0.73 sec +21/21 Test #21: demo_biharmonic_serial ....................... Passed 0.87 sec 100% tests passed, 0 tests failed out of 21 -Total Test time (real) = 26.19 sec +Total Test time (real) = 37.47 sec make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-real/run_demo' == testing complex number build == running tests from test for complex build @@ -5399,7 +5435,7 @@ -- Looking for PETSC_USE_COMPLEX - found -- Checking for one of the modules 'SLEPc;slepc' -- Found ADIOS2: /usr/lib/x86_64-linux-gnu/cmake/adios2/mpi/adios2-config.cmake (found suitable version "2.9.2", minimum required is "2.8.1") found components: CXX --- Configuring done (4.1s) +-- Configuring done (6.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -5454,11 +5490,11 @@ /usr/bin/ctest --force-new-ctest-process Test project /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test Start 1: unittests -1/1 Test #1: unittests ........................ Passed 0.82 sec +1/1 Test #1: unittests ........................ Passed 1.63 sec 100% tests passed, 0 tests failed out of 1 -Total Test time (real) = 0.82 sec +Total Test time (real) = 1.63 sec make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_test' running tests from demo for complex build -- The C compiler identification is GNU 13.2.0 @@ -5513,8 +5549,8 @@ -- Looking for PETSC_USE_REAL_DOUBLE -- Looking for PETSC_USE_REAL_DOUBLE - found -- ** This demo does not support complex mode --- Configuring done (5.1s) --- Generating done (0.0s) +-- Configuring done (8.9s) +-- Generating done (0.1s) -- Build files have been written to: /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo -B/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo --check-build-system CMakeFiles/Makefile.cmake 0 @@ -5619,51 +5655,51 @@ /usr/bin/ctest --force-new-ctest-process Test project /build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo Start 1: demo_custom_kernel_mpi_2 - 1/18 Test #1: demo_custom_kernel_mpi_2 ..................... Passed 1.12 sec + 1/18 Test #1: demo_custom_kernel_mpi_2 ..................... Passed 1.64 sec Start 2: demo_custom_kernel_mpi_3 - 2/18 Test #2: demo_custom_kernel_mpi_3 ..................... Passed 1.67 sec + 2/18 Test #2: demo_custom_kernel_mpi_3 ..................... Passed 1.57 sec Start 3: demo_custom_kernel_serial - 3/18 Test #3: demo_custom_kernel_serial .................... Passed 1.12 sec + 3/18 Test #3: demo_custom_kernel_serial .................... Passed 1.51 sec Start 4: demo_poisson_mpi_2 - 4/18 Test #4: demo_poisson_mpi_2 ........................... Passed 0.56 sec + 4/18 Test #4: demo_poisson_mpi_2 ........................... Passed 0.72 sec Start 5: demo_poisson_mpi_3 - 5/18 Test #5: demo_poisson_mpi_3 ........................... Passed 1.39 sec + 5/18 Test #5: demo_poisson_mpi_3 ........................... Passed 0.67 sec Start 6: demo_poisson_serial - 6/18 Test #6: demo_poisson_serial .......................... Passed 0.95 sec + 6/18 Test #6: demo_poisson_serial .......................... Passed 0.64 sec Start 7: demo_poisson_matrix_free_mpi_2 - 7/18 Test #7: demo_poisson_matrix_free_mpi_2 ............... Passed 0.50 sec + 7/18 Test #7: demo_poisson_matrix_free_mpi_2 ............... Passed 0.66 sec Start 8: demo_poisson_matrix_free_mpi_3 - 8/18 Test #8: demo_poisson_matrix_free_mpi_3 ............... Passed 0.56 sec + 8/18 Test #8: demo_poisson_matrix_free_mpi_3 ............... Passed 0.98 sec Start 9: demo_poisson_matrix_free_serial - 9/18 Test #9: demo_poisson_matrix_free_serial .............. Passed 0.53 sec + 9/18 Test #9: demo_poisson_matrix_free_serial .............. Passed 0.64 sec Start 10: demo_interpolation-io_mpi_2 -10/18 Test #10: demo_interpolation-io_mpi_2 .................. Passed 0.72 sec +10/18 Test #10: demo_interpolation-io_mpi_2 .................. Passed 0.62 sec Start 11: demo_interpolation-io_mpi_3 -11/18 Test #11: demo_interpolation-io_mpi_3 .................. Passed 2.10 sec +11/18 Test #11: demo_interpolation-io_mpi_3 .................. Passed 0.70 sec Start 12: demo_interpolation-io_serial -12/18 Test #12: demo_interpolation-io_serial ................. Passed 1.99 sec +12/18 Test #12: demo_interpolation-io_serial ................. Passed 0.72 sec Start 13: demo_interpolation_different_meshes_mpi_2 -13/18 Test #13: demo_interpolation_different_meshes_mpi_2 .... Passed 1.10 sec +13/18 Test #13: demo_interpolation_different_meshes_mpi_2 .... Passed 1.40 sec Start 14: demo_interpolation_different_meshes_mpi_3 -14/18 Test #14: demo_interpolation_different_meshes_mpi_3 .... Passed 8.98 sec +14/18 Test #14: demo_interpolation_different_meshes_mpi_3 .... Passed 10.92 sec Start 15: demo_interpolation_different_meshes_serial -15/18 Test #15: demo_interpolation_different_meshes_serial ... Passed 0.99 sec +15/18 Test #15: demo_interpolation_different_meshes_serial ... Passed 1.79 sec Start 16: demo_biharmonic_mpi_2 -16/18 Test #16: demo_biharmonic_mpi_2 ........................ Passed 0.70 sec +16/18 Test #16: demo_biharmonic_mpi_2 ........................ Passed 0.83 sec Start 17: demo_biharmonic_mpi_3 -17/18 Test #17: demo_biharmonic_mpi_3 ........................ Passed 0.68 sec +17/18 Test #17: demo_biharmonic_mpi_3 ........................ Passed 0.80 sec Start 18: demo_biharmonic_serial -18/18 Test #18: demo_biharmonic_serial ....................... Passed 0.76 sec +18/18 Test #18: demo_biharmonic_serial ....................... Passed 0.90 sec 100% tests passed, 0 tests failed out of 18 -Total Test time (real) = 26.42 sec +Total Test time (real) = 27.73 sec make[2]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex/run_demo' make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0' debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_auto_install -i --builddir=/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex --destdir=debian/tmp-complex - cd obj-x86_64-linux-gnu-complex && make -j42 install DESTDIR=/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu-complex && make -j20 install DESTDIR=/build/reproducible-path/fenics-dolfinx-0.8.0/debian/tmp-complex AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex' /usr/bin/cmake -S/build/reproducible-path/fenics-dolfinx-0.8.0/cpp -B/build/reproducible-path/fenics-dolfinx-0.8.0/obj-x86_64-linux-gnu-complex --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -5801,23 +5837,23 @@ Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx -Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la -Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement +Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/nls +Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh +Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io -Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common -Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem -Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh +Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement +Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo -Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation-io +Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/interpolation_different_meshes +Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/custom_kernel -Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/poisson_matrix_free -Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/mixed_topology Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic +Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/mixed_topology Searching for files in directory /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/hyperelasticity Reading and parsing tag files Parsing files @@ -6190,11 +6226,19 @@ Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/Function.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/FunctionSpace.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/interpolate.h... +Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/petsc.h... +Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/petsc.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/sparsitybuild.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/traits.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/BoundingBoxTree.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/dolfinx_geometry.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/gjk.h... +Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/utils.h... +Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/utils.h... +Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/utils.h... +Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/utils.h... +Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/utils.h... +Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/AdjacencyList.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/dolfinx_graph.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/graph/ordering.h... @@ -6213,16 +6257,8 @@ Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/dolfinx_la.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/matrix_csr_impl.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/MatrixCSR.h... -Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/petsc.h... -Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/petsc.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/slepc.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/SparsityPattern.h... -Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/common/utils.h... -Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/utils.h... -Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/geometry/utils.h... -Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/utils.h... -Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/utils.h... -Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/utils.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/la/Vector.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/cell_types.h... Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/dolfinx_mesh.h... @@ -6241,9 +6277,9 @@ Generating code for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/refinement/refine.h... Generating file documentation... Generating docs for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/DofMap.h... -Generating docs for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/ADIOS2Writers.h... Generating docs for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/fem/utils.h... Generating docs for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/mesh/utils.h... +Generating docs for file /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/dolfinx/io/ADIOS2Writers.h... Generating page documentation... Generating docs for page md__2build_2reproducible-path_2fenics-dolfinx-0_88_80_2cpp_2demo_2README... Generating docs for page todo... @@ -6537,12 +6573,22 @@ Generating XML output for file Function.h Generating XML output for file FunctionSpace.h Generating XML output for file interpolate.h +Generating XML output for file petsc.cpp +Generating XML output for file petsc.cpp +Generating XML output for file petsc.h +Generating XML output for file petsc.h Generating XML output for file sparsitybuild.cpp Generating XML output for file sparsitybuild.h Generating XML output for file traits.h Generating XML output for file BoundingBoxTree.h Generating XML output for file dolfinx_geometry.h Generating XML output for file gjk.h +Generating XML output for file utils.h +Generating XML output for file utils.h +Generating XML output for file utils.h +Generating XML output for file utils.h +Generating XML output for file utils.h +Generating XML output for file utils.h Generating XML output for file AdjacencyList.h Generating XML output for file dolfinx_graph.h Generating XML output for file ordering.cpp @@ -6573,20 +6619,10 @@ Generating XML output for file dolfinx_la.h Generating XML output for file matrix_csr_impl.h Generating XML output for file MatrixCSR.h -Generating XML output for file petsc.cpp -Generating XML output for file petsc.cpp -Generating XML output for file petsc.h -Generating XML output for file petsc.h Generating XML output for file slepc.cpp Generating XML output for file slepc.h Generating XML output for file SparsityPattern.cpp Generating XML output for file SparsityPattern.h -Generating XML output for file utils.h -Generating XML output for file utils.h -Generating XML output for file utils.h -Generating XML output for file utils.h -Generating XML output for file utils.h -Generating XML output for file utils.h Generating XML output for file Vector.h Generating XML output for file cell_types.cpp Generating XML output for file cell_types.h @@ -6603,6 +6639,9 @@ Generating XML output for file Topology.h Generating XML output for file topologycomputation.cpp Generating XML output for file topologycomputation.h +Generating XML output for file utils.cpp +Generating XML output for file utils.cpp +Generating XML output for file utils.cpp Generating XML output for file dolfinx_nls.h Generating XML output for file NewtonSolver.cpp Generating XML output for file NewtonSolver.h @@ -6610,9 +6649,6 @@ Generating XML output for file plaza.cpp Generating XML output for file plaza.h Generating XML output for file refine.h -Generating XML output for file utils.cpp -Generating XML output for file utils.cpp -Generating XML output for file utils.cpp Generating XML output for page md__2build_2reproducible-path_2fenics-dolfinx-0_88_80_2cpp_2demo_2README Generating XML output for page todo Generate XML output for dir /build/reproducible-path/fenics-dolfinx-0.8.0/cpp/demo/biharmonic/ @@ -6637,7 +6673,7 @@ Generating XML output for the main page Running plantuml with JAVA... Running dot... -Generating dot graphs using 43 parallel threads... +Generating dot graphs using 21 parallel threads... Running dot for graph 1/66 Running dot for graph 2/66 Running dot for graph 3/66 @@ -6742,23 +6778,23 @@ RDMAV_FORK_SAFE=1 \ python3 -m sphinx -W -b html source/ .pybuild/html/) Running Sphinx v7.2.6 -Matplotlib created a temporary config/cache directory at /tmp/matplotlib-jh5i81go because the default path (/nonexistent/first-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. +Matplotlib created a temporary config/cache directory at /tmp/matplotlib-dj_fdck5 because the default path (/nonexistent/second-build/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. TNT degree 2 error: 0.0029421918345155723 TNT degree 2 error: 0.00017118942553985523 -TNT degree 3 error: 8.385106828739385e-06 -TNT degree 4 error: 3.3949902024562747e-07 -TNT degree 5 error: 1.2528243260693608e-08 -TNT degree 6 error: 4.242708674430765e-10 -TNT degree 7 error: 1.9868845694783581e-10 -TNT degree 8 error: 2.9564067966977766e-10 +TNT degree 3 error: 8.385106828739382e-06 +TNT degree 4 error: 3.3949902024564483e-07 +TNT degree 5 error: 1.252824330354652e-08 +TNT degree 6 error: 4.2428270710714196e-10 +TNT degree 7 error: 1.9857560036260907e-10 +TNT degree 8 error: 2.9564067966901247e-10 Q degree 1 error: 0.04076382001057696 Q degree 2 error: 0.0029182213395269026 Q degree 3 error: 0.00015944660110820238 Q degree 4 error: 7.937421445106392e-06 -Q degree 5 error: 3.1034668624542596e-07 -Q degree 6 error: 1.1356498986630504e-08 -Q degree 7 error: 3.4161460419253396e-10 -Q degree 8 error: 6.191397827014307e-11 +Q degree 5 error: 3.103466862454414e-07 +Q degree 6 error: 1.1356498985834765e-08 +Q degree 7 error: 3.416142888358552e-10 +Q degree 8 error: 6.191397828644844e-11 Computed L2 interpolation error (equispaced): 0.01588506513458592 Computed L2 interpolation error (gll_warped): 0.0015137108623519335 making output directory... done @@ -6843,8 +6879,8 @@ debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_shlibdeps --dpkg-shlibdeps-params=--ignore-missing-info +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfinx-real/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/python3/dist-packages/dolfinx/cpp.cpython-312-x86_64-linux-gnu.so debian/python3-dolfinx-real/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/python3/dist-packages/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so were not linked against libmpi_cxx.so.40 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfinx-complex/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/python3/dist-packages/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so debian/python3-dolfinx-complex/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-complex/lib/python3/dist-packages/dolfinx/cpp.cpython-312-x86_64-linux-gnu.so were not linked against libmpi_cxx.so.40 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-dolfinx-real/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/python3/dist-packages/dolfinx/cpp.cpython-311-x86_64-linux-gnu.so debian/python3-dolfinx-real/usr/lib/petscdir/petsc3.20/x86_64-linux-gnu-real/lib/python3/dist-packages/dolfinx/cpp.cpython-312-x86_64-linux-gnu.so were not linked against libmpi_cxx.so.40 (they use none of the library's symbols) make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_installdeb -O--buildsystem=cmake debian/rules override_dh_gencontrol @@ -6855,11 +6891,11 @@ dh_gencontrol -- -Vpetsc:Depends="libpetsc-real3.20-dev, libslepc-real3.20-dev" -Vpetsc-complex:Depends="libpetsc-complex3.20-dev, libslepc-complex3.20-dev" -Vdolfinx:Next-Upstream-Version=1:0.9~ \ -Vnanobind:Upstream-Version=2.0 -Vnanobind:Next-Upstream-Version=3 dpkg-gencontrol: warning: package libdolfinx-complex-dev: substitution variable ${python3:Depends} unused, but is defined -dpkg-gencontrol: warning: package libdolfinx-complex0.8: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-real0.8: substitution variable ${python3:Depends} unused, but is defined -dpkg-gencontrol: warning: package libdolfinx-real-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-dev: substitution variable ${python-petsc4py-alt:Depends} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-dev: substitution variable ${python3:Depends} unused, but is defined +dpkg-gencontrol: warning: package libdolfinx-complex0.8: substitution variable ${python3:Depends} unused, but is defined +dpkg-gencontrol: warning: package libdolfinx-real-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package dolfinx-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package dolfinx-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dpkg-gencontrol: warning: package libdolfinx-real0.8: substitution variable ${python3:Depends} unused, but is defined @@ -6867,13 +6903,13 @@ make[1]: Leaving directory '/build/reproducible-path/fenics-dolfinx-0.8.0' dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'libdolfinx-real-dev' in '../libdolfinx-real-dev_0.8.0-9_amd64.deb'. dpkg-deb: building package 'libdolfinx-dev' in '../libdolfinx-dev_0.8.0-9_amd64.deb'. +dpkg-deb: building package 'libdolfinx-real-dev' in '../libdolfinx-real-dev_0.8.0-9_amd64.deb'. dpkg-deb: building package 'libdolfinx-complex-dev' in '../libdolfinx-complex-dev_0.8.0-9_amd64.deb'. dpkg-deb: building package 'libdolfinx-real0.8' in '../libdolfinx-real0.8_0.8.0-9_amd64.deb'. dpkg-deb: building package 'libdolfinx-real0.8-dbgsym' in '../libdolfinx-real0.8-dbgsym_0.8.0-9_amd64.deb'. -dpkg-deb: building package 'libdolfinx-complex0.8' in '../libdolfinx-complex0.8_0.8.0-9_amd64.deb'. dpkg-deb: building package 'libdolfinx-complex0.8-dbgsym' in '../libdolfinx-complex0.8-dbgsym_0.8.0-9_amd64.deb'. +dpkg-deb: building package 'libdolfinx-complex0.8' in '../libdolfinx-complex0.8_0.8.0-9_amd64.deb'. dpkg-deb: building package 'python3-dolfinx' in '../python3-dolfinx_0.8.0-9_amd64.deb'. dpkg-deb: building package 'python3-dolfinx-real' in '../python3-dolfinx-real_0.8.0-9_amd64.deb'. dpkg-deb: building package 'python3-dolfinx-complex' in '../python3-dolfinx-complex_0.8.0-9_amd64.deb'. @@ -6885,12 +6921,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3905412/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3905412/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1322580 and its subdirectories -I: Current time: Sun Jul 13 15:39:51 -12 2025 -I: pbuilder-time-stamp: 1752464391 +I: removing directory /srv/workspace/pbuilder/3905412 and its subdirectories +I: Current time: Tue Jun 11 15:35:40 +14 2024 +I: pbuilder-time-stamp: 1718069740