Diff of the two buildlogs: -- --- b1/build.log 2024-05-08 13:28:12.071982636 +0000 +++ b2/build.log 2024-05-08 13:30:22.086452275 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 8 01:24:55 -12 2024 -I: pbuilder-time-stamp: 1715174695 +I: Current time: Wed Jun 11 09:51:16 +14 2025 +I: pbuilder-time-stamp: 1749585076 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying tests I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1723467/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3810586/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 10 19:51 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3810586/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3810586/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='1f90d09f77634e2c91810600fab31c6a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1723467' - PS1='# ' - PS2='> ' + INVOCATION_ID=11f507f26f9a419097652dff339fbd33 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3810586 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.96Ix1RXs/pbuilderrc_kqPF --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.96Ix1RXs/b1 --logfile b1/build.log fastaq_3.17.0-6.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.96Ix1RXs/pbuilderrc_8osI --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.96Ix1RXs/b2 --logfile b2/build.log fastaq_3.17.0-6.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 8 11:26 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1723467/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 10 17:46 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3810586/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -196,7 +228,7 @@ Get: 72 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 7.4.4-3 [239 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 samtools amd64 1.19.2-1+b1 [645 kB] -Fetched 29.7 MB in 13s (2279 kB/s) +Fetched 29.7 MB in 1s (43.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19698 files and directories currently installed.) @@ -455,8 +487,8 @@ Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed May 8 13:26:25 UTC 2024. -Universal Time is now: Wed May 8 13:26:25 UTC 2024. +Local time is now: Tue Jun 10 19:52:14 UTC 2025. +Universal Time is now: Tue Jun 10 19:52:14 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -519,7 +551,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/fastaq-3.17.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fastaq_3.17.0-6_source.changes +I: user script /srv/workspace/pbuilder/3810586/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3810586/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/fastaq-3.17.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fastaq_3.17.0-6_source.changes dpkg-buildpackage: info: source package fastaq dpkg-buildpackage: info: source version 3.17.0-6 dpkg-buildpackage: info: source distribution unstable @@ -574,54 +610,54 @@ running build running build_py creating /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq +copying pyfastaq/sequences.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/intervals.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq -copying pyfastaq/caf.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq -copying pyfastaq/__init__.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq -copying pyfastaq/tasks.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/genetic_codes.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq +copying pyfastaq/__init__.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/utils.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq -copying pyfastaq/sequences.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq +copying pyfastaq/tasks.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq +copying pyfastaq/caf.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq creating /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/add_indels.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/make_random_contigs.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/get_ids.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/acgtn_only.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/trim_Ns_at_end.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/merge.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/get_seq_flanking_gaps.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_random_subset.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/count_sequences.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_fasta.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/translate.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_boulderio.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/search_for_seq.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/caf_to_fastq.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/sort_by_size.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/replace_bases.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/fasta_to_fastq.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/trim_contigs.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/expand_nucleotides.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/interleave.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_ends.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/enumerate_names.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_boulderio.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/sort_by_name.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/capillary_to_pairs.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_unique_by_id.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/version.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/count_sequences.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_tiling_bam.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/enumerate_names.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_fake_qual.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_perfect_reads.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/__init__.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_mira_xml.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/reverse_complement.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/add_indels.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/scaffolds_to_contigs.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/sort_by_size.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/version.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/__init__.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/caf_to_fastq.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_perfect_reads.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/strip_illumina_suffix.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/split_by_base_count.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/expand_nucleotides.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/make_random_contigs.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/capillary_to_pairs.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/search_for_seq.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_unique_by_id.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/sort_by_name.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/replace_bases.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_orfs_gff.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_fasta.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/translate.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/chunker.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/fasta_to_fastq.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/trim_contigs.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/filter.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_fake_qual.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/trim_Ns_at_end.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/deinterleave.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/merge.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_random_subset.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/get_seq_flanking_gaps.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/strip_illumina_suffix.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/acgtn_only.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sequence_trim.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/filter.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/chunker.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/split_by_base_count.py -> /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners running build_scripts creating build creating build/scripts-3.11 @@ -664,8 +700,8 @@ gbk_regex = re.compile('^LOCUS\s+\S') -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -======================= 125 passed, 3 warnings in 3.11s ======================== - rm -fr -- /tmp/dh-xdg-rundir-1lOdwnlE +======================= 125 passed, 3 warnings in 2.01s ======================== + rm -fr -- /tmp/dh-xdg-rundir-viPV0IE_ make[1]: Leaving directory '/build/reproducible-path/fastaq-3.17.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -699,101 +735,101 @@ creating /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11 creating /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages creating /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/sequences.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/intervals.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/caf.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/__init__.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/tasks.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/genetic_codes.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/__init__.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/utils.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/sequences.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/tasks.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/caf.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq creating /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/add_indels.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/make_random_contigs.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/get_ids.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/acgtn_only.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/trim_Ns_at_end.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/merge.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/get_seq_flanking_gaps.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_random_subset.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/count_sequences.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_fasta.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/translate.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_boulderio.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/search_for_seq.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/caf_to_fastq.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/sort_by_size.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/replace_bases.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/fasta_to_fastq.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/trim_contigs.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/expand_nucleotides.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/interleave.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/trim_ends.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/enumerate_names.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_boulderio.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/sort_by_name.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/capillary_to_pairs.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_unique_by_id.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/version.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/count_sequences.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_tiling_bam.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/enumerate_names.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_fake_qual.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_perfect_reads.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/__init__.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_mira_xml.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/reverse_complement.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/add_indels.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/scaffolds_to_contigs.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/sort_by_size.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/version.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/__init__.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/caf_to_fastq.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_perfect_reads.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/strip_illumina_suffix.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/split_by_base_count.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/expand_nucleotides.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/make_random_contigs.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/capillary_to_pairs.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/search_for_seq.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_unique_by_id.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/sort_by_name.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/replace_bases.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_orfs_gff.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_fasta.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/translate.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/chunker.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/fasta_to_fastq.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/trim_contigs.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/filter.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners -copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_fake_qual.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/trim_Ns_at_end.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/deinterleave.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/merge.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_random_subset.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/get_seq_flanking_gaps.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/strip_illumina_suffix.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/acgtn_only.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/sequence_trim.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/filter.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/chunker.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +copying /build/reproducible-path/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/split_by_base_count.py -> /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/sequences.py to sequences.cpython-311.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/intervals.py to intervals.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/caf.py to caf.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/tasks.py to tasks.cpython-311.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/genetic_codes.py to genetic_codes.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/utils.py to utils.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/sequences.py to sequences.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/add_indels.py to add_indels.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/tasks.py to tasks.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/caf.py to caf.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/make_random_contigs.py to make_random_contigs.cpython-311.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/get_ids.py to get_ids.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/acgtn_only.py to acgtn_only.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/trim_Ns_at_end.py to trim_Ns_at_end.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/merge.py to merge.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py to get_seq_flanking_gaps.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_random_subset.py to to_random_subset.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/count_sequences.py to count_sequences.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_fasta.py to to_fasta.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/translate.py to translate.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_boulderio.py to to_boulderio.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/search_for_seq.py to search_for_seq.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/caf_to_fastq.py to caf_to_fastq.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/sort_by_size.py to sort_by_size.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/replace_bases.py to replace_bases.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/fasta_to_fastq.py to fasta_to_fastq.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/trim_contigs.py to trim_contigs.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/expand_nucleotides.py to expand_nucleotides.cpython-311.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/interleave.py to interleave.cpython-311.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/trim_ends.py to trim_ends.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/enumerate_names.py to enumerate_names.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_boulderio.py to to_boulderio.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/sort_by_name.py to sort_by_name.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/capillary_to_pairs.py to capillary_to_pairs.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_unique_by_id.py to to_unique_by_id.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/version.py to version.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/count_sequences.py to count_sequences.cpython-311.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_tiling_bam.py to to_tiling_bam.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/enumerate_names.py to enumerate_names.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_fake_qual.py to to_fake_qual.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_perfect_reads.py to to_perfect_reads.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_mira_xml.py to to_mira_xml.cpython-311.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/reverse_complement.py to reverse_complement.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/add_indels.py to add_indels.cpython-311.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py to scaffolds_to_contigs.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/sort_by_size.py to sort_by_size.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/version.py to version.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/caf_to_fastq.py to caf_to_fastq.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_perfect_reads.py to to_perfect_reads.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/strip_illumina_suffix.py to strip_illumina_suffix.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/split_by_base_count.py to split_by_base_count.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/expand_nucleotides.py to expand_nucleotides.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/make_random_contigs.py to make_random_contigs.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/capillary_to_pairs.py to capillary_to_pairs.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/search_for_seq.py to search_for_seq.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_unique_by_id.py to to_unique_by_id.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/sort_by_name.py to sort_by_name.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/replace_bases.py to replace_bases.cpython-311.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_orfs_gff.py to to_orfs_gff.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_fasta.py to to_fasta.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/translate.py to translate.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/chunker.py to chunker.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/fasta_to_fastq.py to fasta_to_fastq.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/trim_contigs.py to trim_contigs.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/filter.py to filter.cpython-311.pyc -byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_fake_qual.py to to_fake_qual.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/trim_Ns_at_end.py to trim_Ns_at_end.cpython-311.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/deinterleave.py to deinterleave.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/merge.py to merge.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_random_subset.py to to_random_subset.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py to get_seq_flanking_gaps.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/strip_illumina_suffix.py to strip_illumina_suffix.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/acgtn_only.py to acgtn_only.cpython-311.pyc byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/sequence_trim.py to sequence_trim.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/filter.py to filter.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/chunker.py to chunker.cpython-311.pyc +byte-compiling /build/reproducible-path/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/split_by_base_count.py to split_by_base_count.cpython-311.pyc running install_egg_info running egg_info creating pyfastaq.egg-info @@ -909,86 +945,126 @@ install -p -m0644 ./debian/man/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq.1 debian/fastaq/usr/share/man/man1/fastaq.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 - mv debian/fastaq/usr/share/man/man1/fastaq-filter.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 - mv debian/fastaq/usr/share/man/man1/fastaq-get_ids.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 - mv debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 - mv debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 - mv debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 - mv debian/fastaq/usr/share/man/man1/fastaq-interleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-interleave.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 - mv debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 - mv debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 - mv debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 - mv debian/fastaq/usr/share/man/man1/fastaq-add_indels.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 - mv 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--suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 + man-recode --to-code UTF-8 --suffix .dh-new 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.dh-new debian/fastaq/usr/share/man/man1/fastaq.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 + mv debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 mv debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 - mv debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 - mv debian/fastaq/usr/share/man/man1/fastaq-merge.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-merge.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 - mv debian/fastaq/usr/share/man/man1/fastaq-translate.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-translate.1 - mv debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 - mv debian/fastaq/usr/share/man/man1/fastaq-chunker.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-chunker.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 mv debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 + mv debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 + mv debian/fastaq/usr/share/man/man1/fastaq-add_indels.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 + mv debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 + mv debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 + mv debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 + mv debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 + mv debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 + mv debian/fastaq/usr/share/man/man1/fastaq-get_ids.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 + mv debian/fastaq/usr/share/man/man1/fastaq-interleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-interleave.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-interleave.1 mv debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 - mv debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 - mv debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 - mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 - mv debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 - mv debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 - mv debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 - mv debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 - mv debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 - mv debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 + mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 + mv debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 + mv debian/fastaq/usr/share/man/man1/fastaq-chunker.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-chunker.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-chunker.1 + mv debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 + mv debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 + mv debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 + mv debian/fastaq/usr/share/man/man1/fastaq-version.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-version.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-version.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 - mv debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 + mv debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 mv debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 - mv debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 - mv debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 + mv debian/fastaq/usr/share/man/man1/fastaq-filter.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-filter.1 + mv debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 + mv debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 + mv debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 - mv debian/fastaq/usr/share/man/man1/fastaq-version.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-version.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 + mv debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 + mv debian/fastaq/usr/share/man/man1/fastaq-translate.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-translate.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-translate.1 mv debian/fastaq/usr/share/man/man1/fastaq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1 - mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 - mv debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq.1 + mv debian/fastaq/usr/share/man/man1/fastaq-merge.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-merge.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-merge.1 + mv debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 + mv debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 + mv debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 + mv debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 + mv debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 + mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 make[1]: Leaving directory '/build/reproducible-path/fastaq-3.17.0' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 6.20240422 @@ -1047,12 +1123,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3810586/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3810586/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1723467 and its subdirectories -I: Current time: Wed May 8 01:28:11 -12 2024 -I: pbuilder-time-stamp: 1715174891 +I: removing directory /srv/workspace/pbuilder/3810586 and its subdirectories +I: Current time: Wed Jun 11 09:53:21 +14 2025 +I: pbuilder-time-stamp: 1749585201