Diff of the two buildlogs: -- --- b1/build.log 2024-05-01 17:13:28.993484021 +0000 +++ b2/build.log 2024-05-01 17:14:16.343466586 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 1 05:11:13 -12 2024 -I: pbuilder-time-stamp: 1714583473 +I: Current time: Wed Jun 4 13:36:32 +14 2025 +I: pbuilder-time-stamp: 1748993792 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -31,52 +31,84 @@ dpkg-source: info: applying build_with_gcc6.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3956814/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/20585/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 3 23:36 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/20585/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/20585/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='8bce1ac9b74d412ca0ff0e6dfaee52cc' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3956814' - PS1='# ' - PS2='> ' + INVOCATION_ID=9edeae53889b49038bddc6572cfed091 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=20585 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8zLO4kEo/pbuilderrc_6SFa --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8zLO4kEo/b1 --logfile b1/build.log dnaclust_3-7.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8zLO4kEo/pbuilderrc_7f3i --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8zLO4kEo/b2 --logfile b2/build.log dnaclust_3-7.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 22 12:43 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3956814/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 27 17:46 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/20585/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -89,7 +121,7 @@ Depends: debhelper-compat (= 12), libboost-dev, libboost-program-options-dev, rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19901 files and directories currently installed.) +(Reading database ... 19725 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -154,10 +186,10 @@ Get: 34 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83-dev amd64 1.83.0-2+b2 [373 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 36 http://deb.debian.org/debian trixie/main amd64 rename all 2.02-1 [21.8 kB] -Fetched 30.4 MB in 4s (6791 kB/s) +Fetched 30.4 MB in 0s (140 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19901 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19725 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. @@ -319,7 +351,11 @@ fakeroot is already the newest version (1.33-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/dnaclust-3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dnaclust_3-7_source.changes +I: user script /srv/workspace/pbuilder/20585/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/20585/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/dnaclust-3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../dnaclust_3-7_source.changes dpkg-buildpackage: info: source package dnaclust dpkg-buildpackage: info: source version 3-7 dpkg-buildpackage: info: source distribution unstable @@ -329,7 +365,7 @@ fakeroot debian/rules clean dh clean dh_auto_clean - make -j20 clean + make -j42 clean make[1]: Entering directory '/build/reproducible-path/dnaclust-3' rm -f dnaclust.o dnaclust fasta.o fastaselect.o fastaselect fastasort fastasort.o make[1]: Leaving directory '/build/reproducible-path/dnaclust-3' @@ -340,7 +376,7 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j20 "INSTALL=install --strip-program=true" + make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/dnaclust-3' g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/dnaclust-3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c++98 -O2 dnaclust.cpp g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/dnaclust-3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -std=c++98 -O2 fasta.cpp @@ -351,22 +387,19 @@ from /usr/include/boost/program_options/value_semantic.hpp:12, from /usr/include/boost/program_options/options_description.hpp:13, from /usr/include/boost/program_options.hpp:15, - from fastasort.cpp:8: + from fastaselect.cpp:8: /usr/include/boost/any/fwd.hpp:34:1: note: '#pragma message: C++03 support is deprecated in Boost.Any 1.82 and will be removed in Boost.Any 1.84.' 34 | BOOST_PRAGMA_MESSAGE("C++03 support is deprecated in Boost.Any 1.82 and will be removed in Boost.Any 1.84.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/type_index.hpp:39:1: note: '#pragma message: C++03 support is deprecated in Boost.TypeIndex 1.82 and will be removed in Boost.TypeIndex 1.84.' 39 | BOOST_PRAGMA_MESSAGE("C++03 support is deprecated in Boost.TypeIndex 1.82 and will be removed in Boost.TypeIndex 1.84.") | ^~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/container_hash/detail/requires_cxx11.hpp:18:1: note: '#pragma message: C++03 support was deprecated in Boost.ContainerHash 1.82 and will be removed in Boost.ContainerHash 1.84. Please open an issue in https://github.com/boostorg/container_hash if you want it retained.' - 18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.ContainerHash 1.82 and will be removed in Boost.ContainerHash 1.84. Please open an issue in https://github.com/boostorg/container_hash if you want it retained.") - | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/any/fwd.hpp:20, from /usr/include/boost/any.hpp:22, from /usr/include/boost/program_options/value_semantic.hpp:12, from /usr/include/boost/program_options/options_description.hpp:13, from /usr/include/boost/program_options.hpp:15, - from fastaselect.cpp:8: + from fastasort.cpp:8: /usr/include/boost/any/fwd.hpp:34:1: note: '#pragma message: C++03 support is deprecated in Boost.Any 1.82 and will be removed in Boost.Any 1.84.' 34 | BOOST_PRAGMA_MESSAGE("C++03 support is deprecated in Boost.Any 1.82 and will be removed in Boost.Any 1.84.") | ^~~~~~~~~~~~~~~~~~~~ @@ -376,11 +409,8 @@ /usr/include/boost/container_hash/detail/requires_cxx11.hpp:18:1: note: '#pragma message: C++03 support was deprecated in Boost.ContainerHash 1.82 and will be removed in Boost.ContainerHash 1.84. Please open an issue in https://github.com/boostorg/container_hash if you want it retained.' 18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.ContainerHash 1.82 and will be removed in Boost.ContainerHash 1.84. Please open an issue in https://github.com/boostorg/container_hash if you want it retained.") | ^~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/function/detail/requires_cxx11.hpp:18:1: note: '#pragma message: C++03 support was deprecated in Boost.Function 1.82 and will be removed in Boost.Function 1.84. Please open an issue in https://github.com/boostorg/function if you want it retained.' - 18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.Function 1.82 and will be removed in Boost.Function 1.84. Please open an issue in https://github.com/boostorg/function if you want it retained.") - | ^~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/bind/detail/requires_cxx11.hpp:18:1: note: '#pragma message: C++03 support was deprecated in Boost.Bind 1.82 and will be removed in Boost.Bind 1.84. Please open an issue in https://github.com/boostorg/bind if you want it retained.' - 18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.Bind 1.82 and will be removed in Boost.Bind 1.84. Please open an issue in https://github.com/boostorg/bind if you want it retained.") +/usr/include/boost/container_hash/detail/requires_cxx11.hpp:18:1: note: '#pragma message: C++03 support was deprecated in Boost.ContainerHash 1.82 and will be removed in Boost.ContainerHash 1.84. Please open an issue in https://github.com/boostorg/container_hash if you want it retained.' + 18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.ContainerHash 1.82 and will be removed in Boost.ContainerHash 1.84. Please open an issue in https://github.com/boostorg/container_hash if you want it retained.") | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/any/fwd.hpp:20, from /usr/include/boost/any.hpp:22, @@ -394,8 +424,8 @@ /usr/include/boost/type_index.hpp:39:1: note: '#pragma message: C++03 support is deprecated in Boost.TypeIndex 1.82 and will be removed in Boost.TypeIndex 1.84.' 39 | BOOST_PRAGMA_MESSAGE("C++03 support is deprecated in Boost.TypeIndex 1.82 and will be removed in Boost.TypeIndex 1.84.") | ^~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/lexical_cast.hpp:40:1: note: '#pragma message: C++03 support is deprecated in Boost.LexicalCast 1.82 and will be removed in Boost.LexicalCast 1.84.' - 40 | BOOST_PRAGMA_MESSAGE("C++03 support is deprecated in Boost.LexicalCast 1.82 and will be removed in Boost.LexicalCast 1.84.") +/usr/include/boost/function/detail/requires_cxx11.hpp:18:1: note: '#pragma message: C++03 support was deprecated in Boost.Function 1.82 and will be removed in Boost.Function 1.84. Please open an issue in https://github.com/boostorg/function if you want it retained.' + 18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.Function 1.82 and will be removed in Boost.Function 1.84. Please open an issue in https://github.com/boostorg/function if you want it retained.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/function/detail/requires_cxx11.hpp:18:1: note: '#pragma message: C++03 support was deprecated in Boost.Function 1.82 and will be removed in Boost.Function 1.84. Please open an issue in https://github.com/boostorg/function if you want it retained.' 18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.Function 1.82 and will be removed in Boost.Function 1.84. Please open an issue in https://github.com/boostorg/function if you want it retained.") @@ -406,12 +436,18 @@ /usr/include/boost/bind/detail/requires_cxx11.hpp:18:1: note: '#pragma message: C++03 support was deprecated in Boost.Bind 1.82 and will be removed in Boost.Bind 1.84. Please open an issue in https://github.com/boostorg/bind if you want it retained.' 18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.Bind 1.82 and will be removed in Boost.Bind 1.84. Please open an issue in https://github.com/boostorg/bind if you want it retained.") | ^~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/bind/detail/requires_cxx11.hpp:18:1: note: '#pragma message: C++03 support was deprecated in Boost.Bind 1.82 and will be removed in Boost.Bind 1.84. Please open an issue in https://github.com/boostorg/bind if you want it retained.' + 18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.Bind 1.82 and will be removed in Boost.Bind 1.84. Please open an issue in https://github.com/boostorg/bind if you want it retained.") + | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/function/detail/requires_cxx11.hpp:18:1: note: '#pragma message: C++03 support was deprecated in Boost.Function 1.82 and will be removed in Boost.Function 1.84. Please open an issue in https://github.com/boostorg/function if you want it retained.' 18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.Function 1.82 and will be removed in Boost.Function 1.84. Please open an issue in https://github.com/boostorg/function if you want it retained.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/lexical_cast.hpp:40:1: note: '#pragma message: C++03 support is deprecated in Boost.LexicalCast 1.82 and will be removed in Boost.LexicalCast 1.84.' 40 | BOOST_PRAGMA_MESSAGE("C++03 support is deprecated in Boost.LexicalCast 1.82 and will be removed in Boost.LexicalCast 1.84.") | ^~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/lexical_cast.hpp:40:1: note: '#pragma message: C++03 support is deprecated in Boost.LexicalCast 1.82 and will be removed in Boost.LexicalCast 1.84.' + 40 | BOOST_PRAGMA_MESSAGE("C++03 support is deprecated in Boost.LexicalCast 1.82 and will be removed in Boost.LexicalCast 1.84.") + | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind/detail/requires_cxx11.hpp:18:1: note: '#pragma message: C++03 support was deprecated in Boost.Bind 1.82 and will be removed in Boost.Bind 1.84. Please open an issue in https://github.com/boostorg/bind if you want it retained.' 18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.Bind 1.82 and will be removed in Boost.Bind 1.84. Please open an issue in https://github.com/boostorg/bind if you want it retained.") | ^~~~~~~~~~~~~~~~~~~~ @@ -483,12 +519,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/20585/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/20585/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3956814 and its subdirectories -I: Current time: Wed May 1 05:13:28 -12 2024 -I: pbuilder-time-stamp: 1714583608 +I: removing directory /srv/workspace/pbuilder/20585 and its subdirectories +I: Current time: Wed Jun 4 13:37:15 +14 2025 +I: pbuilder-time-stamp: 1748993835