Diff of the two buildlogs: -- --- b1/build.log 2024-05-12 13:36:34.158445454 +0000 +++ b2/build.log 2024-05-12 13:37:14.548725980 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun May 12 01:34:46 -12 2024 -I: pbuilder-time-stamp: 1715520886 +I: Current time: Sun Jun 15 09:59:37 +14 2025 +I: pbuilder-time-stamp: 1749931177 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -35,52 +35,84 @@ dpkg-source: info: applying fix-declarations.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1487399/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/384079/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 14 19:59 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/384079/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/384079/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='5c64c30b055043aabb6580e9a9e88c53' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1487399' - PS1='# ' - PS2='> ' + INVOCATION_ID=783ca70f6fad4b36adeb8fb569e366ec + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=384079 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jTYfIhHf/pbuilderrc_b3xf --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jTYfIhHf/b1 --logfile b1/build.log dialign-t_1.0.2-15.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jTYfIhHf/pbuilderrc_ERyX --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jTYfIhHf/b2 --logfile b2/build.log dialign-t_1.0.2-15.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 11 11:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1487399/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 13 17:46 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/384079/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -146,7 +178,7 @@ Get: 28 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.15.3 [901 kB] -Fetched 19.0 MB in 6s (3003 kB/s) +Fetched 19.0 MB in 0s (134 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19700 files and directories currently installed.) @@ -281,7 +313,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/dialign-t-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dialign-t_1.0.2-15_source.changes +I: user script /srv/workspace/pbuilder/384079/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/384079/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/dialign-t-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../dialign-t_1.0.2-15_source.changes dpkg-buildpackage: info: source package dialign-t dpkg-buildpackage: info: source version 1.0.2-15 dpkg-buildpackage: info: source distribution unstable @@ -291,7 +327,7 @@ debian/rules clean dh clean --sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_clean -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source - cd source && make -j20 clean + cd source && make -j42 clean make[1]: Entering directory '/build/reproducible-path/dialign-t-1.0.2/source' rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack museq dialign-tx make[1]: Leaving directory '/build/reproducible-path/dialign-t-1.0.2/source' @@ -303,7 +339,7 @@ dh_autoreconf -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_configure -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_auto_build -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source - cd source && make -j20 "INSTALL=install --strip-program=true" + cd source && make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/dialign-t-1.0.2/source' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o museq.o museq.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o parameters.o parameters.c @@ -314,24 +350,6 @@ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o prob.o prob.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o orf.o orf.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dialign-t-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o translate.o translate.c -assemble.c:37:32: warning: inline function 'find_eqc' declared but never defined - 37 | extern inline struct algn_pos *find_eqc(struct algn_pos **ap, int seqnum, int pos); - | ^~~~~~~~ -assemble.c:25:39: warning: inline function 'find_diags_guided' declared but never defined - 25 | extern inline struct simple_diag_col* find_diags_guided(struct scr_matrix *smatrix, - | ^~~~~~~~~~~~~~~~~ -assemble.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined - 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, - | ^~~~~~~~~~~~~~ -diag.c:1456:17: warning: 'real_calc_weight' is static but used in inline function 'find_diags_dyn' which is not static - 1456 | real_calc_weight(dg, smatrix, pdist,1,tmp_dist,algn); - | ^~~~~~~~~~~~~~~~ -alig.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined - 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, - | ^~~~~~~~~~~~~~ -alig.c:13:20: warning: inline function 'calc_weight' declared but never defined - 13 | extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix, - | ^~~~~~~~~~~ io.c: In function 'read_anchors': io.c:535:23: warning: format '%li' expects argument of type 'long int *', but argument 3 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { @@ -345,6 +363,21 @@ | | | | long int * int * | %i +alig.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined + 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, + | ^~~~~~~~~~~~~~ +alig.c:13:20: warning: inline function 'calc_weight' declared but never defined + 13 | extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix, + | ^~~~~~~~~~~ +assemble.c:37:32: warning: inline function 'find_eqc' declared but never defined + 37 | extern inline struct algn_pos *find_eqc(struct algn_pos **ap, int seqnum, int pos); + | ^~~~~~~~ +assemble.c:25:39: warning: inline function 'find_diags_guided' declared but never defined + 25 | extern inline struct simple_diag_col* find_diags_guided(struct scr_matrix *smatrix, + | ^~~~~~~~~~~~~~~~~ +assemble.c:15:20: warning: inline function 'calc_ov_weight' declared but never defined + 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix, + | ^~~~~~~~~~~~~~ io.c:535:31: warning: format '%li' expects argument of type 'long int *', but argument 5 has type 'int *' [-Wformat=] 535 | while( fscanf(fp,"%li %li %li %li %li %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { | ~~^ ~~~~ @@ -363,6 +396,9 @@ | | | | long int * int * | %i +diag.c:1456:17: warning: 'real_calc_weight' is static but used in inline function 'find_diags_dyn' which is not static + 1456 | real_calc_weight(dg, smatrix, pdist,1,tmp_dist,algn); + | ^~~~~~~~~~~~~~~~ io.c: In function 'read_scr_matrix': io.c:270:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 270 | fscanf( fp, "%i", &is); @@ -409,8 +445,8 @@ dh_gencontrol -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_md5sums -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source dh_builddeb -O--sourcedirectory=/build/reproducible-path/dialign-t-1.0.2/source -dpkg-deb: building package 'dialign-tx' in '../dialign-tx_1.0.2-15_amd64.deb'. dpkg-deb: building package 'dialign-tx-dbgsym' in '../dialign-tx-dbgsym_1.0.2-15_amd64.deb'. +dpkg-deb: building package 'dialign-tx' in '../dialign-tx_1.0.2-15_amd64.deb'. dpkg-deb: building package 'dialign-tx-data' in '../dialign-tx-data_1.0.2-15_all.deb'. dpkg-genbuildinfo --build=binary -O../dialign-t_1.0.2-15_amd64.buildinfo dpkg-genchanges --build=binary -O../dialign-t_1.0.2-15_amd64.changes @@ -419,12 +455,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/384079/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/384079/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1487399 and its subdirectories -I: Current time: Sun May 12 01:36:33 -12 2024 -I: pbuilder-time-stamp: 1715520993 +I: removing directory /srv/workspace/pbuilder/384079 and its subdirectories +I: Current time: Sun Jun 15 10:00:13 +14 2025 +I: pbuilder-time-stamp: 1749931213