Diff of the two buildlogs: -- --- b1/build.log 2024-04-30 09:01:10.951596730 +0000 +++ b2/build.log 2024-04-30 09:16:40.443972643 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jun 2 03:17:09 -12 2025 -I: pbuilder-time-stamp: 1748877429 +I: Current time: Tue Apr 30 23:01:15 +14 2024 +I: pbuilder-time-stamp: 1714467675 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying omit_tests_with_problematic_data.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/858639/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1451145/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 30 09:01 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1451145/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1451145/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='f8287c94ab9e4710940ab3b346f96414' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='858639' - PS1='# ' - PS2='> ' + INVOCATION_ID=1e407c776dd941c0b4171d05ce06fc5b + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1451145 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZZigbBEn/pbuilderrc_I6Bk --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZZigbBEn/b1 --logfile b1/build.log biojava-live_1.9.7+dfsg-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZZigbBEn/pbuilderrc_QEaX --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZZigbBEn/b2 --logfile b2/build.log biojava-live_1.9.7+dfsg-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 27 17:46 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/858639/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 22 12:43 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1451145/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -85,7 +117,7 @@ Depends: debhelper-compat (= 13), maven-debian-helper, default-jdk, junit4, libcommons-dbcp-java, libjaxb-api-java, libjgrapht0.8-java, libjgrapht0.8-java-doc, libmaven-javadoc-plugin-java, libxerces2-java dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19725 files and directories currently installed.) +(Reading database ... 19901 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -179,166 +211,160 @@ 43) libcairo2 [1.18.0-1+b1 (testing)] 44) libcloudproviders0 [0.3.5-1 (testing)] 45) libcolord2 [1.4.7-1+b1 (testing)] -46) libcom-err2 [1.47.0-2.4 (testing)] -47) libcryptsetup12 [2:2.6.1-6+b1 (testing)] -48) libcups2t64 [2.4.7-1.2+b1 (testing)] -49) libdatrie1 [0.2.13-3 (testing)] -50) libdbus-1-3 [1.14.10-4+b1 (testing)] -51) libdconf1 [0.40.0-4+b2 (testing)] -52) libdeflate0 [1.20-1 (testing)] -53) libdevmapper1.02.1 [2:1.02.196-1+b1 (testing)] -54) libdrm-amdgpu1 [2.4.120-2 (testing)] -55) libdrm-common [2.4.120-2 (testing)] -56) libdrm-intel1 [2.4.120-2 (testing)] -57) libdrm-nouveau2 [2.4.120-2 (testing)] -58) libdrm-radeon1 [2.4.120-2 (testing)] -59) libdrm2 [2.4.120-2 (testing)] -60) libedit2 [3.1-20230828-1+b1 (testing)] -61) libel-api-java [3.0.0-3 (testing)] -62) libepoxy0 [1.5.10-1+b2 (testing)] -63) libexpat1 [2.6.2-1 (testing)] -64) libfdisk1 [2.39.3-6 (testing)] -65) libfontconfig1 [2.15.0-1.1 (testing)] -66) libfontenc1 [1:1.1.8-1 (testing)] -67) libfreetype6 [2.13.2+dfsg-1+b4 (testing)] -68) libfribidi0 [1.0.13-3+b1 (testing)] -69) libgdk-pixbuf-2.0-0 [2.42.10+dfsg-3+b3 (testing)] -70) libgdk-pixbuf2.0-common [2.42.10+dfsg-3 (testing)] -71) libgif7 [5.2.2-1 (testing)] -72) libgl1 [1.7.0-1+b1 (testing)] -73) libgl1-mesa-dri [23.3.5-1 (testing)] -74) libglapi-mesa [23.3.5-1 (testing)] -75) libglib2.0-0t64 [2.78.4-7 (testing)] -76) libglvnd0 [1.7.0-1+b1 (testing)] -77) libglx-mesa0 [23.3.5-1 (testing)] -78) libglx0 [1.7.0-1+b1 (testing)] -79) libgraphite2-3 [1.3.14-2 (testing)] -80) libgssapi-krb5-2 [1.20.1-5+b1 (testing)] -81) libgtk-3-0t64 [3.24.41-4 (testing)] -82) libgtk-3-common [3.24.41-4 (testing)] -83) libhamcrest-java [2.2-2 (testing)] -84) libharfbuzz0b [8.3.0-2+b1 (testing)] -85) libjansi-java [2.4.1-2 (testing)] -86) libjbig0 [2.1-6.1+b1 (testing)] -87) libjetty9-java [9.4.54-1 (testing)] -88) libjpeg62-turbo [1:2.1.5-2+b2 (testing)] -89) libjson-c5 [0.17-1+b1 (testing)] -90) libjsoup-java [1.15.3-1 (testing)] -91) libjsp-api-java [2.3.4-3 (testing)] -92) libjtidy-java [7+svn20110807-5 (testing)] -93) libk5crypto3 [1.20.1-5+b1 (testing)] -94) libkeyutils1 [1.6.3-3 (testing)] -95) libkmod2 [31+20240202-2 (testing)] -96) libkrb5-3 [1.20.1-5+b1 (testing)] -97) libkrb5support0 [1.20.1-5+b1 (testing)] -98) liblcms2-2 [2.14-2+b1 (testing)] -99) liblerc4 [4.0.0+ds-4+b1 (testing)] -100) libllvm17t64 [1:17.0.6-11 (testing)] -101) libmaven-clean-plugin-java [3.2.0-2 (testing)] -102) libmaven-compiler-plugin-java [3.10.1-2 (testing)] -103) libmaven-filtering-java [3.3.0-1 (testing)] -104) libmaven-plugin-tools-java [3.7.1-1 (testing)] -105) libmaven-reporting-exec-java [1.6.0-1 (testing)] -106) libmaven-reporting-impl-java [3.2.0-2 (testing)] -107) libmaven-resources-plugin-java [3.3.0-1 (testing)] -108) libmaven-shared-incremental-java [1.1-4 (testing)] -109) libmaven-site-plugin-java [3.12.1-2 (testing)] -110) libnspr4 [2:4.35-1.1+b1 (testing)] -111) libnss3 [2:3.99-1 (testing)] -112) libopentest4j-java [1.2.0-4 (testing)] -113) libopentest4j-reporting-java [0.1.0-M1-2 (testing)] -114) libpam-systemd [255.4-1 (testing)] -115) libpango-1.0-0 [1.52.1+ds-1 (testing)] -116) libpangocairo-1.0-0 [1.52.1+ds-1 (testing)] -117) libpangoft2-1.0-0 [1.52.1+ds-1 (testing)] -118) libpciaccess0 [0.17-3+b1 (testing)] -119) libpcsclite1 [2.0.1-1+b1 (testing)] -120) libpicocli-java [4.6.2-2 (testing)] -121) libpixman-1-0 [0.42.2-1+b1 (testing)] -122) libplexus-ant-factory-java [1.0~alpha2.1-4 (testing)] -123) libplexus-bsh-factory-java [1.0~alpha7-5 (testing)] -124) libplexus-build-api-java [0.0.7-4 (testing)] -125) libplexus-compiler-java [2.12.1-2 (testing)] -126) libplexus-container-default1.5-java [2.1.1-1 (testing)] -127) libpng16-16t64 [1.6.43-5 (testing)] -128) libproc2-0 [2:4.0.4-4 (testing)] -129) libsensors-config [1:3.6.0-9 (testing)] -130) libsensors5 [1:3.6.0-9 (testing)] -131) libservlet-api-java [4.0.1-2 (testing)] -132) libsharpyuv0 [1.3.2-0.4+b1 (testing)] -133) libssl3t64 [3.2.1-3 (testing)] -134) libsurefire-java [2.22.3-2 (testing)] -135) libsystemd-shared [255.4-1 (testing)] -136) libthai-data [0.1.29-2 (testing)] -137) libthai0 [0.1.29-2 (testing)] -138) libtiff6 [4.5.1+git230720-4 (testing)] -139) libunivocity-parsers-java [2.9.1-1 (testing)] -140) libvulkan1 [1.3.280.0-1 (testing)] -141) libwagon-file-java [3.5.3-1 (testing)] -142) libwagon-http-shaded-java [3.5.3-1 (testing)] -143) libwayland-client0 [1.22.0-2.1+b1 (testing)] -144) libwayland-cursor0 [1.22.0-2.1+b1 (testing)] -145) libwayland-egl1 [1.22.0-2.1+b1 (testing)] -146) libwebp7 [1.3.2-0.4+b1 (testing)] -147) libwebsocket-api-java [1.1-2 (testing)] -148) libx11-6 [2:1.8.7-1+b1 (testing)] -149) libx11-data [2:1.8.7-1 (testing)] -150) libx11-xcb1 [2:1.8.7-1+b1 (testing)] -151) libxau6 [1:1.0.9-1+b1 (testing)] -152) libxcb-dri2-0 [1.15-1 (testing)] -153) libxcb-dri3-0 [1.15-1 (testing)] -154) libxcb-glx0 [1.15-1 (testing)] -155) libxcb-present0 [1.15-1 (testing)] -156) libxcb-randr0 [1.15-1 (testing)] -157) libxcb-render0 [1.15-1 (testing)] -158) libxcb-shm0 [1.15-1 (testing)] -159) libxcb-sync1 [1.15-1 (testing)] -160) libxcb-xfixes0 [1.15-1 (testing)] -161) libxcb1 [1.15-1 (testing)] -162) libxcomposite1 [1:0.4.5-1+b1 (testing)] -163) libxcursor1 [1:1.2.1-1+b1 (testing)] -164) libxdamage1 [1:1.1.6-1+b1 (testing)] -165) libxdmcp6 [1:1.1.2-3+b1 (testing)] -166) libxext6 [2:1.3.4-1+b1 (testing)] -167) libxfixes3 [1:6.0.0-2+b1 (testing)] -168) libxi6 [2:1.8.1-1 (testing)] -169) libxinerama1 [2:1.1.4-3+b1 (testing)] -170) libxkbcommon0 [1.6.0-1+b1 (testing)] -171) libxml2-utils [2.9.14+dfsg-1.3+b3 (testing)] -172) libxrandr2 [2:1.5.4-1 (testing)] -173) libxrender1 [1:0.9.10-1.1+b1 (testing)] -174) libxshmfence1 [1.3-1+b1 (testing)] -175) libxtst6 [2:1.2.3-1.1+b1 (testing)] -176) libxxf86vm1 [1:1.1.4-1+b2 (testing)] -177) libz3-4 [4.8.12-3.1+b2 (testing)] -178) maven [3.8.7-2 (testing)] -179) maven-debian-helper [2.6.4 (testing)] -180) maven-repo-helper [1.11 (testing)] -181) openjdk-17-jdk [17.0.11+9-1 (testing)] -182) openjdk-17-jdk-headless [17.0.11+9-1 (testing)] -183) openjdk-17-jre [17.0.11+9-1 (testing)] -184) openjdk-17-jre-headless [17.0.11+9-1 (testing)] -185) openssl [3.2.1-3 (testing)] -186) procps [2:4.0.4-4 (testing)] -187) shared-mime-info [2.4-1 (testing)] -188) systemd [255.4-1 (testing)] -189) systemd-dev [255.4-1 (testing)] -190) systemd-sysv [255.4-1 (testing)] -191) x11-common [1:7.7+23 (testing)] -192) xfonts-encodings [1:1.0.4-2.2 (testing)] -193) xfonts-utils [1:7.7+6 (testing)] -194) xkb-data [2.41-2 (testing)] +46) libcryptsetup12 [2:2.6.1-6+b1 (testing)] +47) libcups2t64 [2.4.7-1.2+b1 (testing)] +48) libdatrie1 [0.2.13-3 (testing)] +49) libdbus-1-3 [1.14.10-4+b1 (testing)] +50) libdconf1 [0.40.0-4+b2 (testing)] +51) libdeflate0 [1.20-1 (testing)] +52) libdevmapper1.02.1 [2:1.02.196-1+b1 (testing)] +53) libdrm-amdgpu1 [2.4.120-2 (testing)] +54) libdrm-common [2.4.120-2 (testing)] +55) libdrm-intel1 [2.4.120-2 (testing)] +56) libdrm-nouveau2 [2.4.120-2 (testing)] +57) libdrm-radeon1 [2.4.120-2 (testing)] +58) libdrm2 [2.4.120-2 (testing)] +59) libedit2 [3.1-20230828-1+b1 (testing)] +60) libel-api-java [3.0.0-3 (testing)] +61) libepoxy0 [1.5.10-1+b2 (testing)] +62) libexpat1 [2.6.2-1 (testing)] +63) libfdisk1 [2.39.3-6 (testing)] +64) libfontconfig1 [2.15.0-1.1 (testing)] +65) libfontenc1 [1:1.1.8-1 (testing)] +66) libfreetype6 [2.13.2+dfsg-1+b4 (testing)] +67) libfribidi0 [1.0.13-3+b1 (testing)] +68) libgdk-pixbuf-2.0-0 [2.42.10+dfsg-3+b3 (testing)] +69) libgdk-pixbuf2.0-common [2.42.10+dfsg-3 (testing)] +70) libgif7 [5.2.2-1 (testing)] +71) libgl1 [1.7.0-1+b1 (testing)] +72) libgl1-mesa-dri [23.3.5-1 (testing)] +73) libglapi-mesa [23.3.5-1 (testing)] +74) libglib2.0-0t64 [2.78.4-7 (testing)] +75) libglvnd0 [1.7.0-1+b1 (testing)] +76) libglx-mesa0 [23.3.5-1 (testing)] +77) libglx0 [1.7.0-1+b1 (testing)] +78) libgraphite2-3 [1.3.14-2 (testing)] +79) libgtk-3-0t64 [3.24.41-4 (testing)] +80) libgtk-3-common [3.24.41-4 (testing)] +81) libhamcrest-java [2.2-2 (testing)] +82) libharfbuzz0b [8.3.0-2+b1 (testing)] +83) libjansi-java [2.4.1-2 (testing)] +84) libjbig0 [2.1-6.1+b1 (testing)] +85) libjetty9-java [9.4.54-1 (testing)] +86) libjpeg62-turbo [1:2.1.5-2+b2 (testing)] +87) libjson-c5 [0.17-1+b1 (testing)] +88) libjsoup-java [1.15.3-1 (testing)] +89) libjsp-api-java [2.3.4-3 (testing)] +90) libjtidy-java [7+svn20110807-5 (testing)] +91) libkmod2 [31+20240202-2 (testing)] +92) liblcms2-2 [2.14-2+b1 (testing)] +93) liblerc4 [4.0.0+ds-4+b1 (testing)] +94) libllvm17t64 [1:17.0.6-11 (testing)] +95) libmaven-clean-plugin-java [3.2.0-2 (testing)] +96) libmaven-compiler-plugin-java [3.10.1-2 (testing)] +97) libmaven-filtering-java [3.3.0-1 (testing)] +98) libmaven-plugin-tools-java [3.7.1-1 (testing)] +99) libmaven-reporting-exec-java [1.6.0-1 (testing)] +100) libmaven-reporting-impl-java [3.2.0-2 (testing)] +101) libmaven-resources-plugin-java [3.3.0-1 (testing)] +102) libmaven-shared-incremental-java [1.1-4 (testing)] +103) libmaven-site-plugin-java [3.12.1-2 (testing)] +104) libnspr4 [2:4.35-1.1+b1 (testing)] +105) libnss3 [2:3.99-1 (testing)] +106) libopentest4j-java [1.2.0-4 (testing)] +107) libopentest4j-reporting-java [0.1.0-M1-2 (testing)] +108) libpam-systemd [255.4-1 (testing)] +109) libpango-1.0-0 [1.52.1+ds-1 (testing)] +110) libpangocairo-1.0-0 [1.52.1+ds-1 (testing)] +111) libpangoft2-1.0-0 [1.52.1+ds-1 (testing)] +112) libpciaccess0 [0.17-3+b1 (testing)] +113) libpcsclite1 [2.0.1-1+b1 (testing)] +114) libpicocli-java [4.6.2-2 (testing)] +115) libpixman-1-0 [0.42.2-1+b1 (testing)] +116) libplexus-ant-factory-java [1.0~alpha2.1-4 (testing)] +117) libplexus-bsh-factory-java [1.0~alpha7-5 (testing)] +118) libplexus-build-api-java [0.0.7-4 (testing)] +119) libplexus-compiler-java [2.12.1-2 (testing)] +120) libplexus-container-default1.5-java [2.1.1-1 (testing)] +121) libpng16-16t64 [1.6.43-5 (testing)] +122) libproc2-0 [2:4.0.4-4 (testing)] +123) libsensors-config [1:3.6.0-9 (testing)] +124) libsensors5 [1:3.6.0-9 (testing)] +125) libservlet-api-java [4.0.1-2 (testing)] +126) libsharpyuv0 [1.3.2-0.4+b1 (testing)] +127) libssl3t64 [3.2.1-3 (testing)] +128) libsurefire-java [2.22.3-2 (testing)] +129) libsystemd-shared [255.4-1 (testing)] +130) libthai-data [0.1.29-2 (testing)] +131) libthai0 [0.1.29-2 (testing)] +132) libtiff6 [4.5.1+git230720-4 (testing)] +133) libunivocity-parsers-java [2.9.1-1 (testing)] +134) libvulkan1 [1.3.280.0-1 (testing)] +135) libwagon-file-java [3.5.3-1 (testing)] +136) libwagon-http-shaded-java [3.5.3-1 (testing)] +137) libwayland-client0 [1.22.0-2.1+b1 (testing)] +138) libwayland-cursor0 [1.22.0-2.1+b1 (testing)] +139) libwayland-egl1 [1.22.0-2.1+b1 (testing)] +140) libwebp7 [1.3.2-0.4+b1 (testing)] +141) libwebsocket-api-java [1.1-2 (testing)] +142) libx11-6 [2:1.8.7-1+b1 (testing)] +143) libx11-data [2:1.8.7-1 (testing)] +144) libx11-xcb1 [2:1.8.7-1+b1 (testing)] +145) libxau6 [1:1.0.9-1+b1 (testing)] +146) libxcb-dri2-0 [1.15-1 (testing)] +147) libxcb-dri3-0 [1.15-1 (testing)] +148) libxcb-glx0 [1.15-1 (testing)] +149) libxcb-present0 [1.15-1 (testing)] +150) libxcb-randr0 [1.15-1 (testing)] +151) libxcb-render0 [1.15-1 (testing)] +152) libxcb-shm0 [1.15-1 (testing)] +153) libxcb-sync1 [1.15-1 (testing)] +154) libxcb-xfixes0 [1.15-1 (testing)] +155) libxcb1 [1.15-1 (testing)] +156) libxcomposite1 [1:0.4.5-1+b1 (testing)] +157) libxcursor1 [1:1.2.1-1+b1 (testing)] +158) libxdamage1 [1:1.1.6-1+b1 (testing)] +159) libxdmcp6 [1:1.1.2-3+b1 (testing)] +160) libxext6 [2:1.3.4-1+b1 (testing)] +161) libxfixes3 [1:6.0.0-2+b1 (testing)] +162) libxi6 [2:1.8.1-1 (testing)] +163) libxinerama1 [2:1.1.4-3+b1 (testing)] +164) libxkbcommon0 [1.6.0-1+b1 (testing)] +165) libxml2-utils [2.9.14+dfsg-1.3+b3 (testing)] +166) libxrandr2 [2:1.5.4-1 (testing)] +167) libxrender1 [1:0.9.10-1.1+b1 (testing)] +168) libxshmfence1 [1.3-1+b1 (testing)] +169) libxtst6 [2:1.2.3-1.1+b1 (testing)] +170) libxxf86vm1 [1:1.1.4-1+b2 (testing)] +171) libz3-4 [4.8.12-3.1+b2 (testing)] +172) maven [3.8.7-2 (testing)] +173) maven-debian-helper [2.6.4 (testing)] +174) maven-repo-helper [1.11 (testing)] +175) openjdk-17-jdk [17.0.11+9-1 (testing)] +176) openjdk-17-jdk-headless [17.0.11+9-1 (testing)] +177) openjdk-17-jre [17.0.11+9-1 (testing)] +178) openjdk-17-jre-headless [17.0.11+9-1 (testing)] +179) openssl [3.2.1-3 (testing)] +180) procps [2:4.0.4-4 (testing)] +181) shared-mime-info [2.4-1 (testing)] +182) systemd [255.4-1 (testing)] +183) systemd-dev [255.4-1 (testing)] +184) systemd-sysv [255.4-1 (testing)] +185) x11-common [1:7.7+23 (testing)] +186) xfonts-encodings [1:1.0.4-2.2 (testing)] +187) xfonts-utils [1:7.7+6 (testing)] +188) xkb-data [2.41-2 (testing)] The following NEW packages will be installed: - adwaita-icon-theme{a} ant{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dmsetup{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} java-wrappers{a} junit4{a} junit5{a} libactivation-java{a} libaopalliance-java{a} libapache-pom-java{a} libapiguardian-java{a} libapparmor1{a} libarchive-zip-perl{a} libargon2-1{a} libasm-java{a} libasound2-data{a} libasound2t64{a} libatinject-jsr330-api-java{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbatik-java{a} libbrotli1{a} libbsd0{a} libbsh-java{a} libcairo-gobject2{a} libcairo2{a} libcdi-api-java{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcommons-beanutils-java{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-configuration-java{a} libcommons-dbcp-java{a} libcommons-digester-java{a} libcommons-io-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcommons-pool-java{a} libcommons-text-java{a} libcommons-validator-java{a} libcryptsetup12{a} libcups2t64{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate0{a} libdevmapper1.02.1{a} libdom4j-java{a} libdoxia-core-java{a} libdoxia-java{a} libdoxia-sitetools-java{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libel-api-java{a} libelf1t64{a} libepoxy0{a} liberror-prone-java{a} libexpat1{a} libfdisk1{a} libfile-stripnondeterminism-perl{a} libfontbox2-java{a} libfontconfig1{a} libfontenc1{a} libfop-java{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libharfbuzz0b{a} libhttpclient-java{a} libhttpcore-java{a} libicu72{a} libitext1-java{a} libjansi-java{a} libjaxb-api-java{a} libjaxen-java{a} libjaxp1.3-java{a} libjbig0{a} libjetty9-java{a} libjgraph-java{a} libjgrapht0.8-java{a} libjgrapht0.8-java-doc{a} libjpeg62-turbo{a} libjson-c5{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjtidy-java{a} libk5crypto3{a} libkeyutils1{a} libkmod2{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} liblerc4{a} libllvm17t64{a} libmagic-mgc{a} libmagic1t64{a} libmaven-archiver-java{a} libmaven-artifact-transfer-java{a} libmaven-clean-plugin-java{a} libmaven-common-artifact-filters-java{a} libmaven-compiler-plugin-java{a} libmaven-file-management-java{a} libmaven-filtering-java{a} libmaven-invoker-java{a} libmaven-jar-plugin-java{a} libmaven-javadoc-plugin-java{a} libmaven-parent-java{a} libmaven-plugin-tools-java{a} libmaven-reporting-api-java{a} libmaven-reporting-exec-java{a} libmaven-reporting-impl-java{a} libmaven-resolver-java{a} libmaven-resources-plugin-java{a} libmaven-shared-incremental-java{a} libmaven-shared-io-java{a} libmaven-shared-utils-java{a} libmaven-site-plugin-java{a} libmaven3-core-java{a} libnspr4{a} libnss3{a} libopentest4j-java{a} libopentest4j-reporting-java{a} liboro-java{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpciaccess0{a} libpcsclite1{a} libpicocli-java{a} libpipeline1{a} libpixman-1-0{a} libplexus-ant-factory-java{a} libplexus-archiver-java{a} libplexus-bsh-factory-java{a} libplexus-build-api-java{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-compiler-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-container-default1.5-java{a} libplexus-i18n-java{a} libplexus-interactivity-api-java{a} libplexus-interpolation-java{a} libplexus-io-java{a} libplexus-languages-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libplexus-velocity-java{a} libpng16-16t64{a} libproc2-0{a} libqdox-java{a} libqdox2-java{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libsharpyuv0{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libssl3t64{a} libsub-override-perl{a} libsurefire-java{a} libsystemd-shared{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libunivocity-parsers-java{a} libvelocity-tools-java{a} libvulkan1{a} libwagon-file-java{a} libwagon-http-shaded-java{a} libwagon-provider-api-java{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwebp7{a} libwebsocket-api-java{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxalan2-java{a} libxau6{a} libxbean-reflect-java{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxml2-utils{a} libxmlgraphics-commons-java{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libxz-java{a} libz3-4{a} m4{a} man-db{a} maven{a} maven-debian-helper{a} maven-repo-helper{a} openjdk-17-jdk{a} openjdk-17-jdk-headless{a} openjdk-17-jre{a} openjdk-17-jre-headless{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} systemd{a} systemd-dev{a} systemd-sysv{a} unzip{a} velocity{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xkb-data{a} + adwaita-icon-theme{a} ant{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dmsetup{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} java-wrappers{a} junit4{a} junit5{a} libactivation-java{a} libaopalliance-java{a} libapache-pom-java{a} libapiguardian-java{a} libapparmor1{a} libarchive-zip-perl{a} libargon2-1{a} libasm-java{a} libasound2-data{a} libasound2t64{a} libatinject-jsr330-api-java{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbatik-java{a} libbrotli1{a} libbsd0{a} libbsh-java{a} libcairo-gobject2{a} libcairo2{a} libcdi-api-java{a} libcloudproviders0{a} libcolord2{a} libcommons-beanutils-java{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-configuration-java{a} libcommons-dbcp-java{a} libcommons-digester-java{a} libcommons-io-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcommons-pool-java{a} libcommons-text-java{a} libcommons-validator-java{a} libcryptsetup12{a} libcups2t64{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate0{a} libdevmapper1.02.1{a} libdom4j-java{a} libdoxia-core-java{a} libdoxia-java{a} libdoxia-sitetools-java{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libel-api-java{a} libelf1t64{a} libepoxy0{a} liberror-prone-java{a} libexpat1{a} libfdisk1{a} libfile-stripnondeterminism-perl{a} libfontbox2-java{a} libfontconfig1{a} libfontenc1{a} libfop-java{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgtk-3-0t64{a} libgtk-3-common{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libharfbuzz0b{a} libhttpclient-java{a} libhttpcore-java{a} libicu72{a} libitext1-java{a} libjansi-java{a} libjaxb-api-java{a} libjaxen-java{a} libjaxp1.3-java{a} libjbig0{a} libjetty9-java{a} libjgraph-java{a} libjgrapht0.8-java{a} libjgrapht0.8-java-doc{a} libjpeg62-turbo{a} libjson-c5{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjtidy-java{a} libkmod2{a} liblcms2-2{a} liblerc4{a} libllvm17t64{a} libmagic-mgc{a} libmagic1t64{a} libmaven-archiver-java{a} libmaven-artifact-transfer-java{a} libmaven-clean-plugin-java{a} libmaven-common-artifact-filters-java{a} libmaven-compiler-plugin-java{a} libmaven-file-management-java{a} libmaven-filtering-java{a} libmaven-invoker-java{a} libmaven-jar-plugin-java{a} libmaven-javadoc-plugin-java{a} libmaven-parent-java{a} libmaven-plugin-tools-java{a} libmaven-reporting-api-java{a} libmaven-reporting-exec-java{a} libmaven-reporting-impl-java{a} libmaven-resolver-java{a} libmaven-resources-plugin-java{a} libmaven-shared-incremental-java{a} libmaven-shared-io-java{a} libmaven-shared-utils-java{a} libmaven-site-plugin-java{a} libmaven3-core-java{a} libnspr4{a} libnss3{a} libopentest4j-java{a} libopentest4j-reporting-java{a} liboro-java{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpciaccess0{a} libpcsclite1{a} libpicocli-java{a} libpipeline1{a} libpixman-1-0{a} libplexus-ant-factory-java{a} libplexus-archiver-java{a} libplexus-bsh-factory-java{a} libplexus-build-api-java{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-compiler-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-container-default1.5-java{a} libplexus-i18n-java{a} libplexus-interactivity-api-java{a} libplexus-interpolation-java{a} libplexus-io-java{a} libplexus-languages-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libplexus-velocity-java{a} libpng16-16t64{a} libproc2-0{a} libqdox-java{a} libqdox2-java{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libsharpyuv0{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libssl3t64{a} libsub-override-perl{a} libsurefire-java{a} libsystemd-shared{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libunivocity-parsers-java{a} libvelocity-tools-java{a} libvulkan1{a} libwagon-file-java{a} libwagon-http-shaded-java{a} libwagon-provider-api-java{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwebp7{a} libwebsocket-api-java{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxalan2-java{a} libxau6{a} libxbean-reflect-java{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxml2-utils{a} libxmlgraphics-commons-java{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libxz-java{a} libz3-4{a} m4{a} man-db{a} maven{a} maven-debian-helper{a} maven-repo-helper{a} openjdk-17-jdk{a} openjdk-17-jdk-headless{a} openjdk-17-jre{a} openjdk-17-jre-headless{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} systemd{a} systemd-dev{a} systemd-sysv{a} unzip{a} velocity{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xkb-data{a} The following packages will be REMOVED: libssl3{a} The following packages are RECOMMENDED but will NOT be installed: - alsa-topology-conf alsa-ucm-conf ant-optional at-spi2-core chrony curl fonts-dejavu-extra icc-profiles-free krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libgdk-pixbuf2.0-bin libglib2.0-data libgtk-3-bin libltdl-dev libmail-sendmail-perl libnss-systemd librsvg2-common libsaxon-java libxt-dev lynx mesa-vulkan-drivers ntpsec openntpd psmisc systemd-timesyncd wget xdg-user-dirs -0 packages upgraded, 315 newly installed, 1 to remove and 0 not upgraded. -Need to get 281 MB of archives. After unpacking 780 MB will be used. + alsa-topology-conf alsa-ucm-conf ant-optional at-spi2-core chrony curl fonts-dejavu-extra icc-profiles-free libarchive-cpio-perl libatk-wrapper-java-jni libgdk-pixbuf2.0-bin libglib2.0-data libgtk-3-bin libltdl-dev libmail-sendmail-perl libnss-systemd librsvg2-common libsaxon-java libxt-dev lynx mesa-vulkan-drivers ntpsec openntpd psmisc systemd-timesyncd wget xdg-user-dirs +0 packages upgraded, 309 newly installed, 1 to remove and 0 not upgraded. +Need to get 281 MB of archives. After unpacking 778 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.2.1-3 [2244 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libapparmor1 amd64 3.0.13-2 [41.6 kB] @@ -456,219 +482,214 @@ Get: 114 http://deb.debian.org/debian trixie/main amd64 libavahi-common-data amd64 0.8-13+b2 [112 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 libavahi-common3 amd64 0.8-13+b2 [43.3 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 libavahi-client3 amd64 0.8-13+b2 [47.0 kB] -Get: 117 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.20.1-5+b1 [33.2 kB] -Get: 118 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.0-2.4 [20.2 kB] -Get: 119 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.20.1-5+b1 [80.0 kB] -Get: 120 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] -Get: 121 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.20.1-5+b1 [333 kB] -Get: 122 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.20.1-5+b1 [135 kB] -Get: 123 http://deb.debian.org/debian trixie/main amd64 libcups2t64 amd64 2.4.7-1.2+b1 [247 kB] -Get: 124 http://deb.debian.org/debian trixie/main amd64 libepoxy0 amd64 1.5.10-1+b2 [191 kB] -Get: 125 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] -Get: 126 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] -Get: 127 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] -Get: 128 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] -Get: 129 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] -Get: 130 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] -Get: 131 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] -Get: 132 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.52.1+ds-1 [216 kB] -Get: 133 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.52.1+ds-1 [48.3 kB] -Get: 134 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.52.1+ds-1 [35.1 kB] -Get: 135 http://deb.debian.org/debian trixie/main amd64 libwayland-client0 amd64 1.22.0-2.1+b1 [25.7 kB] -Get: 136 http://deb.debian.org/debian trixie/main amd64 libwayland-cursor0 amd64 1.22.0-2.1+b1 [11.3 kB] -Get: 137 http://deb.debian.org/debian trixie/main amd64 libwayland-egl1 amd64 1.22.0-2.1+b1 [5640 B] -Get: 138 http://deb.debian.org/debian trixie/main amd64 libxcomposite1 amd64 1:0.4.5-1+b1 [14.9 kB] -Get: 139 http://deb.debian.org/debian trixie/main amd64 libxfixes3 amd64 1:6.0.0-2+b1 [20.3 kB] -Get: 140 http://deb.debian.org/debian trixie/main amd64 libxcursor1 amd64 1:1.2.1-1+b1 [36.2 kB] -Get: 141 http://deb.debian.org/debian trixie/main amd64 libxdamage1 amd64 1:1.1.6-1+b1 [15.5 kB] -Get: 142 http://deb.debian.org/debian trixie/main amd64 libxinerama1 amd64 2:1.1.4-3+b1 [16.0 kB] -Get: 143 http://deb.debian.org/debian trixie/main amd64 xkb-data all 2.41-2 [795 kB] -Get: 144 http://deb.debian.org/debian trixie/main amd64 libxkbcommon0 amd64 1.6.0-1+b1 [109 kB] -Get: 145 http://deb.debian.org/debian trixie/main amd64 libxrandr2 amd64 2:1.5.4-1 [36.1 kB] -Get: 146 http://deb.debian.org/debian trixie/main amd64 libgtk-3-common all 3.24.41-4 [4635 kB] -Get: 147 http://deb.debian.org/debian trixie/main amd64 libgtk-3-0t64 amd64 3.24.41-4 [2727 kB] -Get: 148 http://deb.debian.org/debian trixie/main amd64 libglvnd0 amd64 1.7.0-1+b1 [56.3 kB] -Get: 149 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.120-2 [7688 B] -Get: 150 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.120-2 [38.1 kB] -Get: 151 http://deb.debian.org/debian trixie/main amd64 libglapi-mesa amd64 23.3.5-1 [35.8 kB] -Get: 152 http://deb.debian.org/debian trixie/main amd64 libx11-xcb1 amd64 2:1.8.7-1+b1 [232 kB] -Get: 153 http://deb.debian.org/debian trixie/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] -Get: 154 http://deb.debian.org/debian trixie/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] -Get: 155 http://deb.debian.org/debian trixie/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] -Get: 156 http://deb.debian.org/debian trixie/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] -Get: 157 http://deb.debian.org/debian trixie/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB] -Get: 158 http://deb.debian.org/debian trixie/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] -Get: 159 http://deb.debian.org/debian trixie/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] -Get: 160 http://deb.debian.org/debian trixie/main amd64 libxshmfence1 amd64 1.3-1+b1 [8852 B] -Get: 161 http://deb.debian.org/debian trixie/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] -Get: 162 http://deb.debian.org/debian trixie/main amd64 libvulkan1 amd64 1.3.280.0-1 [123 kB] -Get: 163 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [21.4 kB] -Get: 164 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB] -Get: 165 http://deb.debian.org/debian trixie/main amd64 libdrm-intel1 amd64 2.4.120-2 [62.7 kB] -Get: 166 http://deb.debian.org/debian trixie/main amd64 libdrm-nouveau2 amd64 2.4.120-2 [19.3 kB] -Get: 167 http://deb.debian.org/debian trixie/main amd64 libdrm-radeon1 amd64 2.4.120-2 [22.2 kB] -Get: 168 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20230828-1+b1 [93.5 kB] -Get: 169 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] -Get: 170 http://deb.debian.org/debian trixie/main amd64 libllvm17t64 amd64 1:17.0.6-11 [23.7 MB] -Get: 171 http://deb.debian.org/debian trixie/main amd64 libsensors-config all 1:3.6.0-9 [14.6 kB] -Get: 172 http://deb.debian.org/debian trixie/main amd64 libsensors5 amd64 1:3.6.0-9 [34.6 kB] -Get: 173 http://deb.debian.org/debian trixie/main amd64 libgl1-mesa-dri amd64 23.3.5-1 [8145 kB] -Get: 174 http://deb.debian.org/debian trixie/main amd64 libglx-mesa0 amd64 23.3.5-1 [150 kB] -Get: 175 http://deb.debian.org/debian trixie/main amd64 libglx0 amd64 1.7.0-1+b1 [35.0 kB] -Get: 176 http://deb.debian.org/debian trixie/main amd64 libgl1 amd64 1.7.0-1+b1 [89.8 kB] -Get: 177 http://deb.debian.org/debian trixie/main amd64 libasound2-data all 1.2.11-1 [20.9 kB] -Get: 178 http://deb.debian.org/debian trixie/main amd64 libasound2t64 amd64 1.2.11-1+b1 [369 kB] -Get: 179 http://deb.debian.org/debian trixie/main amd64 libgif7 amd64 5.2.2-1 [43.9 kB] -Get: 180 http://deb.debian.org/debian trixie/main amd64 libxtst6 amd64 2:1.2.3-1.1+b1 [25.9 kB] -Get: 181 http://deb.debian.org/debian trixie/main amd64 openjdk-17-jre amd64 17.0.11+9-1 [185 kB] -Get: 182 http://deb.debian.org/debian trixie/main amd64 default-jre amd64 2:1.17-75 [1056 B] -Get: 183 http://deb.debian.org/debian trixie/main amd64 openjdk-17-jdk-headless amd64 17.0.11+9-1 [71.4 MB] -Get: 184 http://deb.debian.org/debian trixie/main amd64 default-jdk-headless amd64 2:1.17-75 [1108 B] -Get: 185 http://deb.debian.org/debian trixie/main amd64 openjdk-17-jdk amd64 17.0.11+9-1 [10.4 kB] -Get: 186 http://deb.debian.org/debian trixie/main amd64 default-jdk amd64 2:1.17-75 [1068 B] -Get: 187 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-28 [166 kB] -Get: 188 http://deb.debian.org/debian trixie/main amd64 java-wrappers all 0.4 [8916 B] -Get: 189 http://deb.debian.org/debian trixie/main amd64 libhamcrest-java all 2.2-2 [121 kB] -Get: 190 http://deb.debian.org/debian trixie/main amd64 junit4 all 4.13.2-4 [349 kB] -Get: 191 http://deb.debian.org/debian trixie/main amd64 libapiguardian-java all 1.1.2-1 [4656 B] -Get: 192 http://deb.debian.org/debian trixie/main amd64 libopentest4j-java all 1.2.0-4 [9516 B] -Get: 193 http://deb.debian.org/debian trixie/main amd64 libopentest4j-reporting-java all 0.1.0-M1-2 [49.0 kB] -Get: 194 http://deb.debian.org/debian trixie/main amd64 libpicocli-java all 4.6.2-2 [390 kB] -Get: 195 http://deb.debian.org/debian trixie/main amd64 libunivocity-parsers-java all 2.9.1-1 [397 kB] -Get: 196 http://deb.debian.org/debian trixie/main amd64 junit5 all 5.10.1-1 [2458 kB] -Get: 197 http://deb.debian.org/debian trixie/main amd64 libactivation-java all 1.2.0-2 [84.7 kB] -Get: 198 http://deb.debian.org/debian trixie/main amd64 libaopalliance-java all 20070526-7 [8572 B] -Get: 199 http://deb.debian.org/debian trixie/main amd64 libapache-pom-java all 29-2 [5276 B] -Get: 200 http://deb.debian.org/debian trixie/main amd64 libasm-java all 9.7-1 [394 kB] -Get: 201 http://deb.debian.org/debian trixie/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] -Get: 202 http://deb.debian.org/debian trixie/main amd64 libjaxp1.3-java all 1.3.05-6 [227 kB] -Get: 203 http://deb.debian.org/debian trixie/main amd64 libxml-commons-external-java all 1.4.01-6 [240 kB] -Get: 204 http://deb.debian.org/debian trixie/main amd64 libcommons-parent-java all 56-1 [10.8 kB] -Get: 205 http://deb.debian.org/debian trixie/main amd64 libcommons-io-java all 2.16.0-1 [484 kB] -Get: 206 http://deb.debian.org/debian trixie/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB] -Get: 207 http://deb.debian.org/debian trixie/main amd64 libxmlgraphics-commons-java all 2.8-2 [623 kB] -Get: 208 http://deb.debian.org/debian trixie/main amd64 libbatik-java all 1.17+dfsg-1 [3923 kB] -Get: 209 http://deb.debian.org/debian trixie/main amd64 libbsh-java all 2.0b4-20 [291 kB] -Get: 210 http://deb.debian.org/debian trixie/main amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] -Get: 211 http://deb.debian.org/debian trixie/main amd64 libcdi-api-java all 1.2-3 [54.3 kB] -Get: 212 http://deb.debian.org/debian trixie/main amd64 libcommons-collections3-java all 3.2.2-3 [530 kB] -Get: 213 http://deb.debian.org/debian trixie/main amd64 libcommons-beanutils-java all 1.9.4-2 [233 kB] -Get: 214 http://deb.debian.org/debian trixie/main amd64 libcommons-cli-java all 1.6.0-1 [60.4 kB] -Get: 215 http://deb.debian.org/debian trixie/main amd64 libcommons-codec-java all 1.16.0-1 [297 kB] -Get: 216 http://deb.debian.org/debian trixie/main amd64 libcommons-compress-java all 1.25.0-1 [635 kB] -Get: 217 http://deb.debian.org/debian trixie/main amd64 libcommons-lang-java all 2.6-10 [273 kB] -Get: 218 http://deb.debian.org/debian trixie/main amd64 libcommons-configuration-java all 1.10-6 [347 kB] -Get: 219 http://deb.debian.org/debian trixie/main amd64 libcommons-pool-java all 1.6-5 [109 kB] -Get: 220 http://deb.debian.org/debian trixie/main amd64 libcommons-dbcp-java all 1.4-8 [157 kB] -Get: 221 http://deb.debian.org/debian trixie/main amd64 libcommons-digester-java all 1.8.1-6 [137 kB] -Get: 222 http://deb.debian.org/debian trixie/main amd64 libcommons-lang3-java all 3.14.0-1 [621 kB] -Get: 223 http://deb.debian.org/debian trixie/main amd64 libplexus-utils2-java all 3.4.2-1 [258 kB] -Get: 224 http://deb.debian.org/debian trixie/main amd64 libplexus-io-java all 3.3.1-2 [65.3 kB] -Get: 225 http://deb.debian.org/debian trixie/main amd64 libslf4j-java all 1.7.32-1 [144 kB] -Get: 226 http://deb.debian.org/debian trixie/main amd64 libsnappy1v5 amd64 1.1.10-1+b1 [27.6 kB] -Get: 227 http://deb.debian.org/debian trixie/main amd64 libsnappy-jni amd64 1.1.10.5-2 [6396 B] -Get: 228 http://deb.debian.org/debian trixie/main amd64 libsnappy-java all 1.1.10.5-2 [87.5 kB] -Get: 229 http://deb.debian.org/debian trixie/main amd64 libxz-java all 1.9-1 [143 kB] -Get: 230 http://deb.debian.org/debian trixie/main amd64 libplexus-archiver-java all 4.6.1-1 [187 kB] -Get: 231 http://deb.debian.org/debian trixie/main amd64 libplexus-interpolation-java all 1.26-1 [76.8 kB] -Get: 232 http://deb.debian.org/debian trixie/main amd64 libmaven-archiver-java all 3.6.0-1 [25.1 kB] -Get: 233 http://deb.debian.org/debian trixie/main amd64 libmaven-shared-utils-java all 3.3.4-1 [138 kB] -Get: 234 http://deb.debian.org/debian trixie/main amd64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] -Get: 235 http://deb.debian.org/debian trixie/main amd64 liberror-prone-java all 2.18.0-1 [22.5 kB] -Get: 236 http://deb.debian.org/debian trixie/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] -Get: 237 http://deb.debian.org/debian trixie/main amd64 libguava-java all 32.0.1-1 [2708 kB] -Get: 238 http://deb.debian.org/debian trixie/main amd64 libguice-java all 4.2.3-2 [1435 kB] -Get: 239 http://deb.debian.org/debian trixie/main amd64 libmaven-parent-java all 35-1 [6140 B] -Get: 240 http://deb.debian.org/debian trixie/main amd64 libwagon-provider-api-java all 3.5.3-1 [48.2 kB] -Get: 241 http://deb.debian.org/debian trixie/main amd64 libmaven-resolver-java all 1.6.3-1 [548 kB] -Get: 242 http://deb.debian.org/debian trixie/main amd64 libplexus-cipher-java all 2.0-1 [14.9 kB] -Get: 243 http://deb.debian.org/debian trixie/main amd64 libplexus-classworlds-java all 2.7.0-1 [50.6 kB] -Get: 244 http://deb.debian.org/debian trixie/main amd64 libplexus-component-annotations-java all 2.1.1-1 [7660 B] -Get: 245 http://deb.debian.org/debian trixie/main amd64 libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] -Get: 246 http://deb.debian.org/debian trixie/main amd64 libsisu-inject-java all 0.3.4-2 [347 kB] -Get: 247 http://deb.debian.org/debian trixie/main amd64 libsisu-plexus-java all 0.3.4-3 [181 kB] -Get: 248 http://deb.debian.org/debian trixie/main amd64 libmaven3-core-java all 3.8.7-2 [1573 kB] -Get: 249 http://deb.debian.org/debian trixie/main amd64 libmaven-shared-io-java all 3.0.0-4 [33.2 kB] -Get: 250 http://deb.debian.org/debian trixie/main amd64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] -Get: 251 http://deb.debian.org/debian trixie/main amd64 libmaven-jar-plugin-java all 3.3.0-2 [24.0 kB] -Get: 252 http://deb.debian.org/debian trixie/main amd64 libcommons-text-java all 1.11.0-1 [217 kB] -Get: 253 http://deb.debian.org/debian trixie/main amd64 libcommons-validator-java all 1:1.7-1 [181 kB] -Get: 254 http://deb.debian.org/debian trixie/main amd64 libjaxen-java all 1.1.6-4 [214 kB] -Get: 255 http://deb.debian.org/debian trixie/main amd64 libdom4j-java all 2.1.4-1 [312 kB] -Get: 256 http://deb.debian.org/debian trixie/main amd64 libhttpcore-java all 4.4.16-1 [636 kB] -Get: 257 http://deb.debian.org/debian trixie/main amd64 libhttpclient-java all 4.5.14-1 [1247 kB] -Get: 258 http://deb.debian.org/debian trixie/main amd64 libdoxia-core-java all 1.12.0-1 [213 kB] -Get: 259 http://deb.debian.org/debian trixie/main amd64 libfontbox2-java all 2.0.29-1 [1510 kB] -Get: 260 http://deb.debian.org/debian trixie/main amd64 libqdox-java all 1.12.1-3 [172 kB] -Get: 261 http://deb.debian.org/debian trixie/main amd64 libfop-java all 1:2.8-3 [10.1 MB] -Get: 262 http://deb.debian.org/debian trixie/main amd64 libitext1-java all 1.4-7 [1257 kB] -Get: 263 http://deb.debian.org/debian trixie/main amd64 libxbean-reflect-java all 4.5-8 [133 kB] -Get: 264 http://deb.debian.org/debian trixie/main amd64 libplexus-container-default-java all 2.1.1-1 [193 kB] -Get: 265 http://deb.debian.org/debian trixie/main amd64 libdoxia-java all 1.12.0-1 [459 kB] -Get: 266 http://deb.debian.org/debian trixie/main amd64 libmaven-reporting-api-java all 3.1.1-1 [7240 B] -Get: 267 http://deb.debian.org/debian trixie/main amd64 libplexus-i18n-java all 1.0-beta-10-6 [13.4 kB] -Get: 268 http://deb.debian.org/debian trixie/main amd64 velocity all 1.7-7 [431 kB] -Get: 269 http://deb.debian.org/debian trixie/main amd64 libplexus-velocity-java all 1.2-3.1 [10.5 kB] -Get: 270 http://deb.debian.org/debian trixie/main amd64 liboro-java all 2.0.8a-14 [70.5 kB] -Get: 271 http://deb.debian.org/debian trixie/main amd64 libvelocity-tools-java all 2.0-9 [311 kB] -Get: 272 http://deb.debian.org/debian trixie/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] -Get: 273 http://deb.debian.org/debian trixie/main amd64 libxerces2-java all 2.12.2-1 [1440 kB] -Get: 274 http://deb.debian.org/debian trixie/main amd64 libxalan2-java all 2.7.2-4 [3419 kB] -Get: 275 http://deb.debian.org/debian trixie/main amd64 libdoxia-sitetools-java all 1.11.1-1 [202 kB] -Get: 276 http://deb.debian.org/debian trixie/main amd64 libel-api-java all 3.0.0-3 [64.9 kB] -Get: 277 http://deb.debian.org/debian trixie/main amd64 libjansi-java all 2.4.1-2 [100 kB] -Get: 278 http://deb.debian.org/debian trixie/main amd64 libjaxb-api-java all 2.3.1-1 [119 kB] -Get: 279 http://deb.debian.org/debian trixie/main amd64 libjsp-api-java all 2.3.4-3 [53.7 kB] -Get: 280 http://deb.debian.org/debian trixie/main amd64 libservlet-api-java all 4.0.1-2 [81.0 kB] -Get: 281 http://deb.debian.org/debian trixie/main amd64 libwebsocket-api-java all 1.1-2 [40.1 kB] -Get: 282 http://deb.debian.org/debian trixie/main amd64 libjetty9-java all 9.4.54-1 [2980 kB] -Get: 283 http://deb.debian.org/debian trixie/main amd64 libjgraph-java all 5.12.4.2+dfsg-7 [207 kB] -Get: 284 http://deb.debian.org/debian trixie/main amd64 libjgrapht0.8-java all 0.8.3-6 [214 kB] -Get: 285 http://deb.debian.org/debian trixie/main amd64 libjgrapht0.8-java-doc all 0.8.3-6 [379 kB] -Get: 286 http://deb.debian.org/debian trixie/main amd64 libjsoup-java all 1.15.3-1 [431 kB] -Get: 287 http://deb.debian.org/debian trixie/main amd64 libjtidy-java all 7+svn20110807-5 [250 kB] -Get: 288 http://deb.debian.org/debian trixie/main amd64 libmaven-common-artifact-filters-java all 3.3.2-1 [48.2 kB] -Get: 289 http://deb.debian.org/debian trixie/main amd64 libmaven-artifact-transfer-java all 0.13.1-2 [158 kB] -Get: 290 http://deb.debian.org/debian trixie/main amd64 libmaven-clean-plugin-java all 3.2.0-2 [32.2 kB] -Get: 291 http://deb.debian.org/debian trixie/main amd64 libmaven-shared-incremental-java all 1.1-4 [9924 B] -Get: 292 http://deb.debian.org/debian trixie/main amd64 libplexus-compiler-java all 2.12.1-2 [99.0 kB] -Get: 293 http://deb.debian.org/debian trixie/main amd64 libqdox2-java all 2.0.3-1 [296 kB] -Get: 294 http://deb.debian.org/debian trixie/main amd64 libplexus-languages-java all 1.1.1-2 [47.3 kB] -Get: 295 http://deb.debian.org/debian trixie/main amd64 libmaven-compiler-plugin-java all 3.10.1-2 [59.0 kB] -Get: 296 http://deb.debian.org/debian trixie/main amd64 libplexus-build-api-java all 0.0.7-4 [10.3 kB] -Get: 297 http://deb.debian.org/debian trixie/main amd64 libmaven-filtering-java all 3.3.0-1 [50.2 kB] -Get: 298 http://deb.debian.org/debian trixie/main amd64 libmaven-invoker-java all 3.2.0-1 [28.1 kB] -Get: 299 http://deb.debian.org/debian trixie/main amd64 libplexus-interactivity-api-java all 1.1-2 [11.0 kB] -Get: 300 http://deb.debian.org/debian trixie/main amd64 libmaven-javadoc-plugin-java all 3.4.1-3 [454 kB] -Get: 301 http://deb.debian.org/debian trixie/main amd64 libmaven-reporting-impl-java all 3.2.0-2 [15.2 kB] -Get: 302 http://deb.debian.org/debian trixie/main amd64 libplexus-container-default1.5-java all 2.1.1-1 [4476 B] -Get: 303 http://deb.debian.org/debian trixie/main amd64 libplexus-ant-factory-java all 1.0~alpha2.1-4 [11.4 kB] -Get: 304 http://deb.debian.org/debian trixie/main amd64 libplexus-bsh-factory-java all 1.0~alpha7-5 [8360 B] -Get: 305 http://deb.debian.org/debian trixie/main amd64 libmaven-plugin-tools-java all 3.7.1-1 [265 kB] -Get: 306 http://deb.debian.org/debian trixie/main amd64 libmaven-reporting-exec-java all 1.6.0-1 [26.8 kB] -Get: 307 http://deb.debian.org/debian trixie/main amd64 libmaven-resources-plugin-java all 3.3.0-1 [28.4 kB] -Get: 308 http://deb.debian.org/debian trixie/main amd64 libmaven-site-plugin-java all 3.12.1-2 [107 kB] -Get: 309 http://deb.debian.org/debian trixie/main amd64 libsurefire-java all 2.22.3-2 [1169 kB] -Get: 310 http://deb.debian.org/debian trixie/main amd64 libwagon-file-java all 3.5.3-1 [8388 B] -Get: 311 http://deb.debian.org/debian trixie/main amd64 libwagon-http-shaded-java all 3.5.3-1 [1341 kB] -Get: 312 http://deb.debian.org/debian trixie/main amd64 libxml2-utils amd64 2.9.14+dfsg-1.3+b3 [99.0 kB] -Get: 313 http://deb.debian.org/debian trixie/main amd64 maven all 3.8.7-2 [19.3 kB] -Get: 314 http://deb.debian.org/debian trixie/main amd64 maven-repo-helper all 1.11 [142 kB] -Get: 315 http://deb.debian.org/debian trixie/main amd64 maven-debian-helper all 2.6.4 [108 kB] -Fetched 281 MB in 3s (80.6 MB/s) +Get: 117 http://deb.debian.org/debian trixie/main amd64 libcups2t64 amd64 2.4.7-1.2+b1 [247 kB] +Get: 118 http://deb.debian.org/debian trixie/main amd64 libepoxy0 amd64 1.5.10-1+b2 [191 kB] +Get: 119 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] +Get: 120 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] +Get: 121 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] +Get: 122 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] +Get: 123 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] +Get: 124 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] +Get: 125 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] +Get: 126 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.52.1+ds-1 [216 kB] +Get: 127 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.52.1+ds-1 [48.3 kB] +Get: 128 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.52.1+ds-1 [35.1 kB] +Get: 129 http://deb.debian.org/debian trixie/main amd64 libwayland-client0 amd64 1.22.0-2.1+b1 [25.7 kB] +Get: 130 http://deb.debian.org/debian trixie/main amd64 libwayland-cursor0 amd64 1.22.0-2.1+b1 [11.3 kB] +Get: 131 http://deb.debian.org/debian trixie/main amd64 libwayland-egl1 amd64 1.22.0-2.1+b1 [5640 B] +Get: 132 http://deb.debian.org/debian trixie/main amd64 libxcomposite1 amd64 1:0.4.5-1+b1 [14.9 kB] +Get: 133 http://deb.debian.org/debian trixie/main amd64 libxfixes3 amd64 1:6.0.0-2+b1 [20.3 kB] +Get: 134 http://deb.debian.org/debian trixie/main amd64 libxcursor1 amd64 1:1.2.1-1+b1 [36.2 kB] +Get: 135 http://deb.debian.org/debian trixie/main amd64 libxdamage1 amd64 1:1.1.6-1+b1 [15.5 kB] +Get: 136 http://deb.debian.org/debian trixie/main amd64 libxinerama1 amd64 2:1.1.4-3+b1 [16.0 kB] +Get: 137 http://deb.debian.org/debian trixie/main amd64 xkb-data all 2.41-2 [795 kB] +Get: 138 http://deb.debian.org/debian trixie/main amd64 libxkbcommon0 amd64 1.6.0-1+b1 [109 kB] +Get: 139 http://deb.debian.org/debian trixie/main amd64 libxrandr2 amd64 2:1.5.4-1 [36.1 kB] +Get: 140 http://deb.debian.org/debian trixie/main amd64 libgtk-3-common all 3.24.41-4 [4635 kB] +Get: 141 http://deb.debian.org/debian trixie/main amd64 libgtk-3-0t64 amd64 3.24.41-4 [2727 kB] +Get: 142 http://deb.debian.org/debian trixie/main amd64 libglvnd0 amd64 1.7.0-1+b1 [56.3 kB] +Get: 143 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.120-2 [7688 B] +Get: 144 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.120-2 [38.1 kB] +Get: 145 http://deb.debian.org/debian trixie/main amd64 libglapi-mesa amd64 23.3.5-1 [35.8 kB] +Get: 146 http://deb.debian.org/debian trixie/main amd64 libx11-xcb1 amd64 2:1.8.7-1+b1 [232 kB] +Get: 147 http://deb.debian.org/debian trixie/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] +Get: 148 http://deb.debian.org/debian trixie/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] +Get: 149 http://deb.debian.org/debian trixie/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] +Get: 150 http://deb.debian.org/debian trixie/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] +Get: 151 http://deb.debian.org/debian trixie/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB] +Get: 152 http://deb.debian.org/debian trixie/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] +Get: 153 http://deb.debian.org/debian trixie/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] +Get: 154 http://deb.debian.org/debian trixie/main amd64 libxshmfence1 amd64 1.3-1+b1 [8852 B] +Get: 155 http://deb.debian.org/debian trixie/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] +Get: 156 http://deb.debian.org/debian trixie/main amd64 libvulkan1 amd64 1.3.280.0-1 [123 kB] +Get: 157 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [21.4 kB] +Get: 158 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB] +Get: 159 http://deb.debian.org/debian trixie/main amd64 libdrm-intel1 amd64 2.4.120-2 [62.7 kB] +Get: 160 http://deb.debian.org/debian trixie/main amd64 libdrm-nouveau2 amd64 2.4.120-2 [19.3 kB] +Get: 161 http://deb.debian.org/debian trixie/main amd64 libdrm-radeon1 amd64 2.4.120-2 [22.2 kB] +Get: 162 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20230828-1+b1 [93.5 kB] +Get: 163 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] +Get: 164 http://deb.debian.org/debian trixie/main amd64 libllvm17t64 amd64 1:17.0.6-11 [23.7 MB] +Get: 165 http://deb.debian.org/debian trixie/main amd64 libsensors-config all 1:3.6.0-9 [14.6 kB] +Get: 166 http://deb.debian.org/debian trixie/main amd64 libsensors5 amd64 1:3.6.0-9 [34.6 kB] +Get: 167 http://deb.debian.org/debian trixie/main amd64 libgl1-mesa-dri amd64 23.3.5-1 [8145 kB] +Get: 168 http://deb.debian.org/debian trixie/main amd64 libglx-mesa0 amd64 23.3.5-1 [150 kB] +Get: 169 http://deb.debian.org/debian trixie/main amd64 libglx0 amd64 1.7.0-1+b1 [35.0 kB] +Get: 170 http://deb.debian.org/debian trixie/main amd64 libgl1 amd64 1.7.0-1+b1 [89.8 kB] +Get: 171 http://deb.debian.org/debian trixie/main amd64 libasound2-data all 1.2.11-1 [20.9 kB] +Get: 172 http://deb.debian.org/debian trixie/main amd64 libasound2t64 amd64 1.2.11-1+b1 [369 kB] +Get: 173 http://deb.debian.org/debian trixie/main amd64 libgif7 amd64 5.2.2-1 [43.9 kB] +Get: 174 http://deb.debian.org/debian trixie/main amd64 libxtst6 amd64 2:1.2.3-1.1+b1 [25.9 kB] +Get: 175 http://deb.debian.org/debian trixie/main amd64 openjdk-17-jre amd64 17.0.11+9-1 [185 kB] +Get: 176 http://deb.debian.org/debian trixie/main amd64 default-jre amd64 2:1.17-75 [1056 B] +Get: 177 http://deb.debian.org/debian trixie/main amd64 openjdk-17-jdk-headless amd64 17.0.11+9-1 [71.4 MB] +Get: 178 http://deb.debian.org/debian trixie/main amd64 default-jdk-headless amd64 2:1.17-75 [1108 B] +Get: 179 http://deb.debian.org/debian trixie/main amd64 openjdk-17-jdk amd64 17.0.11+9-1 [10.4 kB] +Get: 180 http://deb.debian.org/debian trixie/main amd64 default-jdk amd64 2:1.17-75 [1068 B] +Get: 181 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-28 [166 kB] +Get: 182 http://deb.debian.org/debian trixie/main amd64 java-wrappers all 0.4 [8916 B] +Get: 183 http://deb.debian.org/debian trixie/main amd64 libhamcrest-java all 2.2-2 [121 kB] +Get: 184 http://deb.debian.org/debian trixie/main amd64 junit4 all 4.13.2-4 [349 kB] +Get: 185 http://deb.debian.org/debian trixie/main amd64 libapiguardian-java all 1.1.2-1 [4656 B] +Get: 186 http://deb.debian.org/debian trixie/main amd64 libopentest4j-java all 1.2.0-4 [9516 B] +Get: 187 http://deb.debian.org/debian trixie/main amd64 libopentest4j-reporting-java all 0.1.0-M1-2 [49.0 kB] +Get: 188 http://deb.debian.org/debian trixie/main amd64 libpicocli-java all 4.6.2-2 [390 kB] +Get: 189 http://deb.debian.org/debian trixie/main amd64 libunivocity-parsers-java all 2.9.1-1 [397 kB] +Get: 190 http://deb.debian.org/debian trixie/main amd64 junit5 all 5.10.1-1 [2458 kB] +Get: 191 http://deb.debian.org/debian trixie/main amd64 libactivation-java all 1.2.0-2 [84.7 kB] +Get: 192 http://deb.debian.org/debian trixie/main amd64 libaopalliance-java all 20070526-7 [8572 B] +Get: 193 http://deb.debian.org/debian trixie/main amd64 libapache-pom-java all 29-2 [5276 B] +Get: 194 http://deb.debian.org/debian trixie/main amd64 libasm-java all 9.7-1 [394 kB] +Get: 195 http://deb.debian.org/debian trixie/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] +Get: 196 http://deb.debian.org/debian trixie/main amd64 libjaxp1.3-java all 1.3.05-6 [227 kB] +Get: 197 http://deb.debian.org/debian trixie/main amd64 libxml-commons-external-java all 1.4.01-6 [240 kB] +Get: 198 http://deb.debian.org/debian trixie/main amd64 libcommons-parent-java all 56-1 [10.8 kB] +Get: 199 http://deb.debian.org/debian trixie/main amd64 libcommons-io-java all 2.16.0-1 [484 kB] +Get: 200 http://deb.debian.org/debian trixie/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB] +Get: 201 http://deb.debian.org/debian trixie/main amd64 libxmlgraphics-commons-java all 2.8-2 [623 kB] +Get: 202 http://deb.debian.org/debian trixie/main amd64 libbatik-java all 1.17+dfsg-1 [3923 kB] +Get: 203 http://deb.debian.org/debian trixie/main amd64 libbsh-java all 2.0b4-20 [291 kB] +Get: 204 http://deb.debian.org/debian trixie/main amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] +Get: 205 http://deb.debian.org/debian trixie/main amd64 libcdi-api-java all 1.2-3 [54.3 kB] +Get: 206 http://deb.debian.org/debian trixie/main amd64 libcommons-collections3-java all 3.2.2-3 [530 kB] +Get: 207 http://deb.debian.org/debian trixie/main amd64 libcommons-beanutils-java all 1.9.4-2 [233 kB] +Get: 208 http://deb.debian.org/debian trixie/main amd64 libcommons-cli-java all 1.6.0-1 [60.4 kB] +Get: 209 http://deb.debian.org/debian trixie/main amd64 libcommons-codec-java all 1.16.0-1 [297 kB] +Get: 210 http://deb.debian.org/debian trixie/main amd64 libcommons-compress-java all 1.25.0-1 [635 kB] +Get: 211 http://deb.debian.org/debian trixie/main amd64 libcommons-lang-java all 2.6-10 [273 kB] +Get: 212 http://deb.debian.org/debian trixie/main amd64 libcommons-configuration-java all 1.10-6 [347 kB] +Get: 213 http://deb.debian.org/debian trixie/main amd64 libcommons-pool-java all 1.6-5 [109 kB] +Get: 214 http://deb.debian.org/debian trixie/main amd64 libcommons-dbcp-java all 1.4-8 [157 kB] +Get: 215 http://deb.debian.org/debian trixie/main amd64 libcommons-digester-java all 1.8.1-6 [137 kB] +Get: 216 http://deb.debian.org/debian trixie/main amd64 libcommons-lang3-java all 3.14.0-1 [621 kB] +Get: 217 http://deb.debian.org/debian trixie/main amd64 libplexus-utils2-java all 3.4.2-1 [258 kB] +Get: 218 http://deb.debian.org/debian trixie/main amd64 libplexus-io-java all 3.3.1-2 [65.3 kB] +Get: 219 http://deb.debian.org/debian trixie/main amd64 libslf4j-java all 1.7.32-1 [144 kB] +Get: 220 http://deb.debian.org/debian trixie/main amd64 libsnappy1v5 amd64 1.1.10-1+b1 [27.6 kB] +Get: 221 http://deb.debian.org/debian trixie/main amd64 libsnappy-jni amd64 1.1.10.5-2 [6396 B] +Get: 222 http://deb.debian.org/debian trixie/main amd64 libsnappy-java all 1.1.10.5-2 [87.5 kB] +Get: 223 http://deb.debian.org/debian trixie/main amd64 libxz-java all 1.9-1 [143 kB] +Get: 224 http://deb.debian.org/debian trixie/main amd64 libplexus-archiver-java all 4.6.1-1 [187 kB] +Get: 225 http://deb.debian.org/debian trixie/main amd64 libplexus-interpolation-java all 1.26-1 [76.8 kB] +Get: 226 http://deb.debian.org/debian trixie/main amd64 libmaven-archiver-java all 3.6.0-1 [25.1 kB] +Get: 227 http://deb.debian.org/debian trixie/main amd64 libmaven-shared-utils-java all 3.3.4-1 [138 kB] +Get: 228 http://deb.debian.org/debian trixie/main amd64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] +Get: 229 http://deb.debian.org/debian trixie/main amd64 liberror-prone-java all 2.18.0-1 [22.5 kB] +Get: 230 http://deb.debian.org/debian trixie/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] +Get: 231 http://deb.debian.org/debian trixie/main amd64 libguava-java all 32.0.1-1 [2708 kB] +Get: 232 http://deb.debian.org/debian trixie/main amd64 libguice-java all 4.2.3-2 [1435 kB] +Get: 233 http://deb.debian.org/debian trixie/main amd64 libmaven-parent-java all 35-1 [6140 B] +Get: 234 http://deb.debian.org/debian trixie/main amd64 libwagon-provider-api-java all 3.5.3-1 [48.2 kB] +Get: 235 http://deb.debian.org/debian trixie/main amd64 libmaven-resolver-java all 1.6.3-1 [548 kB] +Get: 236 http://deb.debian.org/debian trixie/main amd64 libplexus-cipher-java all 2.0-1 [14.9 kB] +Get: 237 http://deb.debian.org/debian trixie/main amd64 libplexus-classworlds-java all 2.7.0-1 [50.6 kB] +Get: 238 http://deb.debian.org/debian trixie/main amd64 libplexus-component-annotations-java all 2.1.1-1 [7660 B] +Get: 239 http://deb.debian.org/debian trixie/main amd64 libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] +Get: 240 http://deb.debian.org/debian trixie/main amd64 libsisu-inject-java all 0.3.4-2 [347 kB] +Get: 241 http://deb.debian.org/debian trixie/main amd64 libsisu-plexus-java all 0.3.4-3 [181 kB] +Get: 242 http://deb.debian.org/debian trixie/main amd64 libmaven3-core-java all 3.8.7-2 [1573 kB] +Get: 243 http://deb.debian.org/debian trixie/main amd64 libmaven-shared-io-java all 3.0.0-4 [33.2 kB] +Get: 244 http://deb.debian.org/debian trixie/main amd64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] +Get: 245 http://deb.debian.org/debian trixie/main amd64 libmaven-jar-plugin-java all 3.3.0-2 [24.0 kB] +Get: 246 http://deb.debian.org/debian trixie/main amd64 libcommons-text-java all 1.11.0-1 [217 kB] +Get: 247 http://deb.debian.org/debian trixie/main amd64 libcommons-validator-java all 1:1.7-1 [181 kB] +Get: 248 http://deb.debian.org/debian trixie/main amd64 libjaxen-java all 1.1.6-4 [214 kB] +Get: 249 http://deb.debian.org/debian trixie/main amd64 libdom4j-java all 2.1.4-1 [312 kB] +Get: 250 http://deb.debian.org/debian trixie/main amd64 libhttpcore-java all 4.4.16-1 [636 kB] +Get: 251 http://deb.debian.org/debian trixie/main amd64 libhttpclient-java all 4.5.14-1 [1247 kB] +Get: 252 http://deb.debian.org/debian trixie/main amd64 libdoxia-core-java all 1.12.0-1 [213 kB] +Get: 253 http://deb.debian.org/debian trixie/main amd64 libfontbox2-java all 2.0.29-1 [1510 kB] +Get: 254 http://deb.debian.org/debian trixie/main amd64 libqdox-java all 1.12.1-3 [172 kB] +Get: 255 http://deb.debian.org/debian trixie/main amd64 libfop-java all 1:2.8-3 [10.1 MB] +Get: 256 http://deb.debian.org/debian trixie/main amd64 libitext1-java all 1.4-7 [1257 kB] +Get: 257 http://deb.debian.org/debian trixie/main amd64 libxbean-reflect-java all 4.5-8 [133 kB] +Get: 258 http://deb.debian.org/debian trixie/main amd64 libplexus-container-default-java all 2.1.1-1 [193 kB] +Get: 259 http://deb.debian.org/debian trixie/main amd64 libdoxia-java all 1.12.0-1 [459 kB] +Get: 260 http://deb.debian.org/debian trixie/main amd64 libmaven-reporting-api-java all 3.1.1-1 [7240 B] +Get: 261 http://deb.debian.org/debian trixie/main amd64 libplexus-i18n-java all 1.0-beta-10-6 [13.4 kB] +Get: 262 http://deb.debian.org/debian trixie/main amd64 velocity all 1.7-7 [431 kB] +Get: 263 http://deb.debian.org/debian trixie/main amd64 libplexus-velocity-java all 1.2-3.1 [10.5 kB] +Get: 264 http://deb.debian.org/debian trixie/main amd64 liboro-java all 2.0.8a-14 [70.5 kB] +Get: 265 http://deb.debian.org/debian trixie/main amd64 libvelocity-tools-java all 2.0-9 [311 kB] +Get: 266 http://deb.debian.org/debian trixie/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] +Get: 267 http://deb.debian.org/debian trixie/main amd64 libxerces2-java all 2.12.2-1 [1440 kB] +Get: 268 http://deb.debian.org/debian trixie/main amd64 libxalan2-java all 2.7.2-4 [3419 kB] +Get: 269 http://deb.debian.org/debian trixie/main amd64 libdoxia-sitetools-java all 1.11.1-1 [202 kB] +Get: 270 http://deb.debian.org/debian trixie/main amd64 libel-api-java all 3.0.0-3 [64.9 kB] +Get: 271 http://deb.debian.org/debian trixie/main amd64 libjansi-java all 2.4.1-2 [100 kB] +Get: 272 http://deb.debian.org/debian trixie/main amd64 libjaxb-api-java all 2.3.1-1 [119 kB] +Get: 273 http://deb.debian.org/debian trixie/main amd64 libjsp-api-java all 2.3.4-3 [53.7 kB] +Get: 274 http://deb.debian.org/debian trixie/main amd64 libservlet-api-java all 4.0.1-2 [81.0 kB] +Get: 275 http://deb.debian.org/debian trixie/main amd64 libwebsocket-api-java all 1.1-2 [40.1 kB] +Get: 276 http://deb.debian.org/debian trixie/main amd64 libjetty9-java all 9.4.54-1 [2980 kB] +Get: 277 http://deb.debian.org/debian trixie/main amd64 libjgraph-java all 5.12.4.2+dfsg-7 [207 kB] +Get: 278 http://deb.debian.org/debian trixie/main amd64 libjgrapht0.8-java all 0.8.3-6 [214 kB] +Get: 279 http://deb.debian.org/debian trixie/main amd64 libjgrapht0.8-java-doc all 0.8.3-6 [379 kB] +Get: 280 http://deb.debian.org/debian trixie/main amd64 libjsoup-java all 1.15.3-1 [431 kB] +Get: 281 http://deb.debian.org/debian trixie/main amd64 libjtidy-java all 7+svn20110807-5 [250 kB] +Get: 282 http://deb.debian.org/debian trixie/main amd64 libmaven-common-artifact-filters-java all 3.3.2-1 [48.2 kB] +Get: 283 http://deb.debian.org/debian trixie/main amd64 libmaven-artifact-transfer-java all 0.13.1-2 [158 kB] +Get: 284 http://deb.debian.org/debian trixie/main amd64 libmaven-clean-plugin-java all 3.2.0-2 [32.2 kB] +Get: 285 http://deb.debian.org/debian trixie/main amd64 libmaven-shared-incremental-java all 1.1-4 [9924 B] +Get: 286 http://deb.debian.org/debian trixie/main amd64 libplexus-compiler-java all 2.12.1-2 [99.0 kB] +Get: 287 http://deb.debian.org/debian trixie/main amd64 libqdox2-java all 2.0.3-1 [296 kB] +Get: 288 http://deb.debian.org/debian trixie/main amd64 libplexus-languages-java all 1.1.1-2 [47.3 kB] +Get: 289 http://deb.debian.org/debian trixie/main amd64 libmaven-compiler-plugin-java all 3.10.1-2 [59.0 kB] +Get: 290 http://deb.debian.org/debian trixie/main amd64 libplexus-build-api-java all 0.0.7-4 [10.3 kB] +Get: 291 http://deb.debian.org/debian trixie/main amd64 libmaven-filtering-java all 3.3.0-1 [50.2 kB] +Get: 292 http://deb.debian.org/debian trixie/main amd64 libmaven-invoker-java all 3.2.0-1 [28.1 kB] +Get: 293 http://deb.debian.org/debian trixie/main amd64 libplexus-interactivity-api-java all 1.1-2 [11.0 kB] +Get: 294 http://deb.debian.org/debian trixie/main amd64 libmaven-javadoc-plugin-java all 3.4.1-3 [454 kB] +Get: 295 http://deb.debian.org/debian trixie/main amd64 libmaven-reporting-impl-java all 3.2.0-2 [15.2 kB] +Get: 296 http://deb.debian.org/debian trixie/main amd64 libplexus-container-default1.5-java all 2.1.1-1 [4476 B] +Get: 297 http://deb.debian.org/debian trixie/main amd64 libplexus-ant-factory-java all 1.0~alpha2.1-4 [11.4 kB] +Get: 298 http://deb.debian.org/debian trixie/main amd64 libplexus-bsh-factory-java all 1.0~alpha7-5 [8360 B] +Get: 299 http://deb.debian.org/debian trixie/main amd64 libmaven-plugin-tools-java all 3.7.1-1 [265 kB] +Get: 300 http://deb.debian.org/debian trixie/main amd64 libmaven-reporting-exec-java all 1.6.0-1 [26.8 kB] +Get: 301 http://deb.debian.org/debian trixie/main amd64 libmaven-resources-plugin-java all 3.3.0-1 [28.4 kB] +Get: 302 http://deb.debian.org/debian trixie/main amd64 libmaven-site-plugin-java all 3.12.1-2 [107 kB] +Get: 303 http://deb.debian.org/debian trixie/main amd64 libsurefire-java all 2.22.3-2 [1169 kB] +Get: 304 http://deb.debian.org/debian trixie/main amd64 libwagon-file-java all 3.5.3-1 [8388 B] +Get: 305 http://deb.debian.org/debian trixie/main amd64 libwagon-http-shaded-java all 3.5.3-1 [1341 kB] +Get: 306 http://deb.debian.org/debian trixie/main amd64 libxml2-utils amd64 2.9.14+dfsg-1.3+b3 [99.0 kB] +Get: 307 http://deb.debian.org/debian trixie/main amd64 maven all 3.8.7-2 [19.3 kB] +Get: 308 http://deb.debian.org/debian trixie/main amd64 maven-repo-helper all 1.11 [142 kB] +Get: 309 http://deb.debian.org/debian trixie/main amd64 maven-debian-helper all 2.6.4 [108 kB] +Fetched 281 MB in 15s (19.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libssl3:amd64: dependency problems, but removing anyway as you requested: + libkrb5-3:amd64 depends on libssl3 (>= 3.0.0). coreutils depends on libssl3 (>= 3.0.0). -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19725 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19901 files and directories currently installed.) Removing libssl3:amd64 (3.1.5-1) ... Selecting previously unselected package libssl3t64:amd64. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19712 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19888 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.1-3_amd64.deb ... Unpacking libssl3t64:amd64 (3.2.1-3) ... Setting up libssl3t64:amd64 (3.2.1-3) ... Selecting previously unselected package libapparmor1:amd64. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19727 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19903 files and directories currently installed.) Preparing to unpack .../00-libapparmor1_3.0.13-2_amd64.deb ... Unpacking libapparmor1:amd64 (3.0.13-2) ... Selecting previously unselected package libargon2-1:amd64. @@ -720,7 +741,7 @@ Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. Setting up dmsetup (2:1.02.196-1+b1) ... Selecting previously unselected package systemd-sysv. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20820 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20996 files and directories currently installed.) Preparing to unpack .../000-systemd-sysv_255.4-1_amd64.deb ... Unpacking systemd-sysv (255.4-1) ... Selecting previously unselected package libdbus-1-3:amd64. @@ -1032,602 +1053,584 @@ Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../103-libavahi-client3_0.8-13+b2_amd64.deb ... Unpacking libavahi-client3:amd64 (0.8-13+b2) ... -Selecting previously unselected package libkrb5support0:amd64. -Preparing to unpack .../104-libkrb5support0_1.20.1-5+b1_amd64.deb ... -Unpacking libkrb5support0:amd64 (1.20.1-5+b1) ... -Selecting previously unselected package libcom-err2:amd64. -Preparing to unpack .../105-libcom-err2_1.47.0-2.4_amd64.deb ... -Unpacking libcom-err2:amd64 (1.47.0-2.4) ... -Selecting previously unselected package libk5crypto3:amd64. -Preparing to unpack .../106-libk5crypto3_1.20.1-5+b1_amd64.deb ... -Unpacking libk5crypto3:amd64 (1.20.1-5+b1) ... -Selecting previously unselected package libkeyutils1:amd64. -Preparing to unpack .../107-libkeyutils1_1.6.3-3_amd64.deb ... -Unpacking libkeyutils1:amd64 (1.6.3-3) ... -Selecting previously unselected package libkrb5-3:amd64. -Preparing to unpack .../108-libkrb5-3_1.20.1-5+b1_amd64.deb ... -Unpacking libkrb5-3:amd64 (1.20.1-5+b1) ... -Selecting previously unselected package libgssapi-krb5-2:amd64. -Preparing to unpack .../109-libgssapi-krb5-2_1.20.1-5+b1_amd64.deb ... -Unpacking libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Selecting previously unselected package libcups2t64:amd64. -Preparing to unpack .../110-libcups2t64_2.4.7-1.2+b1_amd64.deb ... +Preparing to unpack .../104-libcups2t64_2.4.7-1.2+b1_amd64.deb ... Unpacking libcups2t64:amd64 (2.4.7-1.2+b1) ... Selecting previously unselected package libepoxy0:amd64. -Preparing to unpack .../111-libepoxy0_1.5.10-1+b2_amd64.deb ... +Preparing to unpack .../105-libepoxy0_1.5.10-1+b2_amd64.deb ... Unpacking libepoxy0:amd64 (1.5.10-1+b2) ... Selecting previously unselected package libfribidi0:amd64. -Preparing to unpack .../112-libfribidi0_1.0.13-3+b1_amd64.deb ... +Preparing to unpack .../106-libfribidi0_1.0.13-3+b1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.13-3+b1) ... Selecting previously unselected package libgraphite2-3:amd64. -Preparing to unpack .../113-libgraphite2-3_1.3.14-2_amd64.deb ... +Preparing to unpack .../107-libgraphite2-3_1.3.14-2_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-2) ... Selecting previously unselected package libharfbuzz0b:amd64. -Preparing to unpack .../114-libharfbuzz0b_8.3.0-2+b1_amd64.deb ... +Preparing to unpack .../108-libharfbuzz0b_8.3.0-2+b1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (8.3.0-2+b1) ... Selecting previously unselected package fontconfig. -Preparing to unpack .../115-fontconfig_2.15.0-1.1_amd64.deb ... +Preparing to unpack .../109-fontconfig_2.15.0-1.1_amd64.deb ... Unpacking fontconfig (2.15.0-1.1) ... Selecting previously unselected package libthai-data. -Preparing to unpack .../116-libthai-data_0.1.29-2_all.deb ... +Preparing to unpack .../110-libthai-data_0.1.29-2_all.deb ... Unpacking libthai-data (0.1.29-2) ... Selecting previously unselected package libdatrie1:amd64. -Preparing to unpack .../117-libdatrie1_0.2.13-3_amd64.deb ... +Preparing to unpack .../111-libdatrie1_0.2.13-3_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.13-3) ... Selecting previously unselected package libthai0:amd64. -Preparing to unpack .../118-libthai0_0.1.29-2_amd64.deb ... +Preparing to unpack .../112-libthai0_0.1.29-2_amd64.deb ... Unpacking libthai0:amd64 (0.1.29-2) ... Selecting previously unselected package libpango-1.0-0:amd64. -Preparing to unpack .../119-libpango-1.0-0_1.52.1+ds-1_amd64.deb ... +Preparing to unpack .../113-libpango-1.0-0_1.52.1+ds-1_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.52.1+ds-1) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. -Preparing to unpack .../120-libpangoft2-1.0-0_1.52.1+ds-1_amd64.deb ... +Preparing to unpack .../114-libpangoft2-1.0-0_1.52.1+ds-1_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.52.1+ds-1) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. -Preparing to unpack .../121-libpangocairo-1.0-0_1.52.1+ds-1_amd64.deb ... +Preparing to unpack .../115-libpangocairo-1.0-0_1.52.1+ds-1_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.52.1+ds-1) ... Selecting previously unselected package libwayland-client0:amd64. -Preparing to unpack .../122-libwayland-client0_1.22.0-2.1+b1_amd64.deb ... +Preparing to unpack .../116-libwayland-client0_1.22.0-2.1+b1_amd64.deb ... Unpacking libwayland-client0:amd64 (1.22.0-2.1+b1) ... Selecting previously unselected package libwayland-cursor0:amd64. -Preparing to unpack .../123-libwayland-cursor0_1.22.0-2.1+b1_amd64.deb ... +Preparing to unpack .../117-libwayland-cursor0_1.22.0-2.1+b1_amd64.deb ... Unpacking libwayland-cursor0:amd64 (1.22.0-2.1+b1) ... Selecting previously unselected package libwayland-egl1:amd64. -Preparing to unpack .../124-libwayland-egl1_1.22.0-2.1+b1_amd64.deb ... +Preparing to unpack .../118-libwayland-egl1_1.22.0-2.1+b1_amd64.deb ... Unpacking libwayland-egl1:amd64 (1.22.0-2.1+b1) ... Selecting previously unselected package libxcomposite1:amd64. -Preparing to unpack .../125-libxcomposite1_1%3a0.4.5-1+b1_amd64.deb ... +Preparing to unpack .../119-libxcomposite1_1%3a0.4.5-1+b1_amd64.deb ... Unpacking libxcomposite1:amd64 (1:0.4.5-1+b1) ... Selecting previously unselected package libxfixes3:amd64. -Preparing to unpack .../126-libxfixes3_1%3a6.0.0-2+b1_amd64.deb ... +Preparing to unpack .../120-libxfixes3_1%3a6.0.0-2+b1_amd64.deb ... Unpacking libxfixes3:amd64 (1:6.0.0-2+b1) ... Selecting previously unselected package libxcursor1:amd64. -Preparing to unpack .../127-libxcursor1_1%3a1.2.1-1+b1_amd64.deb ... +Preparing to unpack .../121-libxcursor1_1%3a1.2.1-1+b1_amd64.deb ... Unpacking libxcursor1:amd64 (1:1.2.1-1+b1) ... Selecting previously unselected package libxdamage1:amd64. -Preparing to unpack .../128-libxdamage1_1%3a1.1.6-1+b1_amd64.deb ... +Preparing to unpack .../122-libxdamage1_1%3a1.1.6-1+b1_amd64.deb ... Unpacking libxdamage1:amd64 (1:1.1.6-1+b1) ... Selecting previously unselected package libxinerama1:amd64. -Preparing to unpack .../129-libxinerama1_2%3a1.1.4-3+b1_amd64.deb ... +Preparing to unpack .../123-libxinerama1_2%3a1.1.4-3+b1_amd64.deb ... Unpacking libxinerama1:amd64 (2:1.1.4-3+b1) ... Selecting previously unselected package xkb-data. -Preparing to unpack .../130-xkb-data_2.41-2_all.deb ... +Preparing to unpack .../124-xkb-data_2.41-2_all.deb ... Unpacking xkb-data (2.41-2) ... Selecting previously unselected package libxkbcommon0:amd64. -Preparing to unpack .../131-libxkbcommon0_1.6.0-1+b1_amd64.deb ... +Preparing to unpack .../125-libxkbcommon0_1.6.0-1+b1_amd64.deb ... Unpacking libxkbcommon0:amd64 (1.6.0-1+b1) ... Selecting previously unselected package libxrandr2:amd64. -Preparing to unpack .../132-libxrandr2_2%3a1.5.4-1_amd64.deb ... +Preparing to unpack .../126-libxrandr2_2%3a1.5.4-1_amd64.deb ... Unpacking libxrandr2:amd64 (2:1.5.4-1) ... Selecting previously unselected package libgtk-3-common. -Preparing to unpack .../133-libgtk-3-common_3.24.41-4_all.deb ... +Preparing to unpack .../127-libgtk-3-common_3.24.41-4_all.deb ... Unpacking libgtk-3-common (3.24.41-4) ... Selecting previously unselected package libgtk-3-0t64:amd64. -Preparing to unpack .../134-libgtk-3-0t64_3.24.41-4_amd64.deb ... +Preparing to unpack .../128-libgtk-3-0t64_3.24.41-4_amd64.deb ... Unpacking libgtk-3-0t64:amd64 (3.24.41-4) ... Selecting previously unselected package libglvnd0:amd64. -Preparing to unpack .../135-libglvnd0_1.7.0-1+b1_amd64.deb ... +Preparing to unpack .../129-libglvnd0_1.7.0-1+b1_amd64.deb ... Unpacking libglvnd0:amd64 (1.7.0-1+b1) ... Selecting previously unselected package libdrm-common. -Preparing to unpack .../136-libdrm-common_2.4.120-2_all.deb ... +Preparing to unpack .../130-libdrm-common_2.4.120-2_all.deb ... Unpacking libdrm-common (2.4.120-2) ... Selecting previously unselected package libdrm2:amd64. -Preparing to unpack .../137-libdrm2_2.4.120-2_amd64.deb ... +Preparing to unpack .../131-libdrm2_2.4.120-2_amd64.deb ... Unpacking libdrm2:amd64 (2.4.120-2) ... Selecting previously unselected package libglapi-mesa:amd64. -Preparing to unpack .../138-libglapi-mesa_23.3.5-1_amd64.deb ... +Preparing to unpack .../132-libglapi-mesa_23.3.5-1_amd64.deb ... Unpacking libglapi-mesa:amd64 (23.3.5-1) ... Selecting previously unselected package libx11-xcb1:amd64. -Preparing to unpack .../139-libx11-xcb1_2%3a1.8.7-1+b1_amd64.deb ... +Preparing to unpack .../133-libx11-xcb1_2%3a1.8.7-1+b1_amd64.deb ... Unpacking libx11-xcb1:amd64 (2:1.8.7-1+b1) ... Selecting previously unselected package libxcb-dri2-0:amd64. -Preparing to unpack .../140-libxcb-dri2-0_1.15-1_amd64.deb ... +Preparing to unpack .../134-libxcb-dri2-0_1.15-1_amd64.deb ... Unpacking libxcb-dri2-0:amd64 (1.15-1) ... 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Selecting previously unselected package libplexus-container-default1.5-java. -Preparing to unpack .../289-libplexus-container-default1.5-java_2.1.1-1_all.deb ... +Preparing to unpack .../283-libplexus-container-default1.5-java_2.1.1-1_all.deb ... Unpacking libplexus-container-default1.5-java (2.1.1-1) ... Selecting previously unselected package libplexus-ant-factory-java. -Preparing to unpack .../290-libplexus-ant-factory-java_1.0~alpha2.1-4_all.deb ... +Preparing to unpack .../284-libplexus-ant-factory-java_1.0~alpha2.1-4_all.deb ... Unpacking libplexus-ant-factory-java (1.0~alpha2.1-4) ... Selecting previously unselected package libplexus-bsh-factory-java. -Preparing to unpack .../291-libplexus-bsh-factory-java_1.0~alpha7-5_all.deb ... +Preparing to unpack .../285-libplexus-bsh-factory-java_1.0~alpha7-5_all.deb ... Unpacking libplexus-bsh-factory-java (1.0~alpha7-5) ... Selecting previously unselected package libmaven-plugin-tools-java. -Preparing to unpack .../292-libmaven-plugin-tools-java_3.7.1-1_all.deb ... +Preparing to unpack .../286-libmaven-plugin-tools-java_3.7.1-1_all.deb ... Unpacking libmaven-plugin-tools-java (3.7.1-1) ... Selecting previously unselected package libmaven-reporting-exec-java. -Preparing to unpack .../293-libmaven-reporting-exec-java_1.6.0-1_all.deb ... +Preparing to unpack .../287-libmaven-reporting-exec-java_1.6.0-1_all.deb ... Unpacking libmaven-reporting-exec-java (1.6.0-1) ... Selecting previously unselected package libmaven-resources-plugin-java. -Preparing to unpack .../294-libmaven-resources-plugin-java_3.3.0-1_all.deb ... +Preparing to unpack .../288-libmaven-resources-plugin-java_3.3.0-1_all.deb ... Unpacking libmaven-resources-plugin-java (3.3.0-1) ... Selecting previously unselected package libmaven-site-plugin-java. -Preparing to unpack .../295-libmaven-site-plugin-java_3.12.1-2_all.deb ... +Preparing to unpack .../289-libmaven-site-plugin-java_3.12.1-2_all.deb ... Unpacking libmaven-site-plugin-java (3.12.1-2) ... Selecting previously unselected package libsurefire-java. -Preparing to unpack .../296-libsurefire-java_2.22.3-2_all.deb ... +Preparing to unpack .../290-libsurefire-java_2.22.3-2_all.deb ... Unpacking libsurefire-java (2.22.3-2) ... Selecting previously unselected package libwagon-file-java. -Preparing to unpack .../297-libwagon-file-java_3.5.3-1_all.deb ... +Preparing to unpack .../291-libwagon-file-java_3.5.3-1_all.deb ... Unpacking libwagon-file-java (3.5.3-1) ... Selecting previously unselected package libwagon-http-shaded-java. -Preparing to unpack .../298-libwagon-http-shaded-java_3.5.3-1_all.deb ... +Preparing to unpack .../292-libwagon-http-shaded-java_3.5.3-1_all.deb ... Unpacking libwagon-http-shaded-java (3.5.3-1) ... Selecting previously unselected package libxml2-utils. -Preparing to unpack .../299-libxml2-utils_2.9.14+dfsg-1.3+b3_amd64.deb ... +Preparing to unpack .../293-libxml2-utils_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2-utils (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package maven. -Preparing to unpack .../300-maven_3.8.7-2_all.deb ... +Preparing to unpack .../294-maven_3.8.7-2_all.deb ... Unpacking maven (3.8.7-2) ... Selecting previously unselected package maven-repo-helper. -Preparing to unpack .../301-maven-repo-helper_1.11_all.deb ... +Preparing to unpack .../295-maven-repo-helper_1.11_all.deb ... Unpacking maven-repo-helper (1.11) ... Selecting previously unselected package maven-debian-helper. -Preparing to unpack .../302-maven-debian-helper_2.6.4_all.deb ... +Preparing to unpack .../296-maven-debian-helper_2.6.4_all.deb ... Unpacking maven-debian-helper (2.6.4) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up libpipeline1:amd64 (1.5.7-2) ... @@ -1640,7 +1643,6 @@ Setting up systemd-sysv (255.4-1) ... Setting up libxau6:amd64 (1:1.0.9-1+b1) ... Setting up libplexus-utils2-java (3.4.2-1) ... -Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libplexus-classworlds-java (2.7.0-1) ... Setting up libqdox-java (1.12.1-3) ... Setting up libopentest4j-reporting-java (0.1.0-M1-2) ... @@ -1675,14 +1677,12 @@ Setting up libel-api-java (3.0.0-3) ... Setting up xkb-data (2.41-2) ... Setting up libplexus-component-annotations-java (2.1.1-1) ... -Setting up libcom-err2:amd64 (1.47.0-2.4) ... Setting up file (1:5.45-3) ... Setting up libunivocity-parsers-java (2.9.1-1) ... Setting up libjbig0:amd64 (2.1-6.1+b1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up liboro-java (2.0.8a-14) ... Setting up libsnappy1v5:amd64 (1.1.10-1+b1) ... -Setting up libkrb5support0:amd64 (1.20.1-5+b1) ... Setting up libfontbox2-java (2.0.29-1) ... Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... @@ -1719,7 +1719,6 @@ Setting up autopoint (0.21-14) ... Setting up libpcsclite1:amd64 (2.0.1-1+b1) ... Setting up libsensors5:amd64 (1:3.6.0-9) ... -Setting up libk5crypto3:amd64 (1.20.1-5+b1) ... Setting up libjgraph-java (5.12.4.2+dfsg-7) ... Setting up libactivation-java (1.2.0-2) ... Setting up libhamcrest-java (2.2-2) ... @@ -1746,7 +1745,6 @@ Setting up libsub-override-perl (0.10-1) ... Setting up libthai-data (0.1.29-2) ... Setting up sgml-base (1.31) ... -Setting up libkrb5-3:amd64 (1.20.1-5+b1) ... Setting up libwagon-http-shaded-java (3.5.3-1) ... Setting up libwayland-egl1:amd64 (1.22.0-2.1+b1) ... Setting up libhttpcore-java (4.4.16-1) ... @@ -1811,7 +1809,6 @@ Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.4-1) ... -Setting up libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Setting up libcommons-lang3-java (3.14.0-1) ... Setting up libxcb-dri2-0:amd64 (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... @@ -2140,7 +2137,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/biojava-live-1.9.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biojava-live_1.9.7+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/1451145/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1451145/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/biojava-live-1.9.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../biojava-live_1.9.7+dfsg-1_source.changes dpkg-buildpackage: info: source package biojava-live dpkg-buildpackage: info: source version 1:1.9.7+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -2243,8 +2244,8 @@ [INFO] Compiling 44 source files to /build/reproducible-path/biojava-live-1.9.7+dfsg/bytecode/target/classes [INFO] /build/reproducible-path/biojava-live-1.9.7+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/MethodRootContext.java: Some input files use or override a deprecated API that is marked for removal. [INFO] /build/reproducible-path/biojava-live-1.9.7+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/MethodRootContext.java: Recompile with -Xlint:removal for details. -[INFO] /build/reproducible-path/biojava-live-1.9.7+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/IntrospectedCodeClass.java: Some input files use unchecked or unsafe operations. -[INFO] /build/reproducible-path/biojava-live-1.9.7+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/IntrospectedCodeClass.java: Recompile with -Xlint:unchecked for details. +[INFO] /build/reproducible-path/biojava-live-1.9.7+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/ConstantPool.java: Some input files use unchecked or unsafe operations. +[INFO] /build/reproducible-path/biojava-live-1.9.7+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/ConstantPool.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ bytecode --- [INFO] skip non existing resourceDirectory /build/reproducible-path/biojava-live-1.9.7+dfsg/bytecode/src/test/resources @@ -2989,8 +2990,8 @@ [INFO] Compiling 44 source files to /build/reproducible-path/biojava-live-1.9.7+dfsg/bytecode/target/classes [INFO] /build/reproducible-path/biojava-live-1.9.7+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/MethodRootContext.java: Some input files use or override a deprecated API that is marked for removal. [INFO] /build/reproducible-path/biojava-live-1.9.7+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/MethodRootContext.java: Recompile with -Xlint:removal for details. -[INFO] /build/reproducible-path/biojava-live-1.9.7+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/IntrospectedCodeClass.java: Some input files use unchecked or unsafe operations. -[INFO] /build/reproducible-path/biojava-live-1.9.7+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/IntrospectedCodeClass.java: Recompile with -Xlint:unchecked for details. +[INFO] /build/reproducible-path/biojava-live-1.9.7+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/ConstantPool.java: Some input files use unchecked or unsafe operations. +[INFO] /build/reproducible-path/biojava-live-1.9.7+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/ConstantPool.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking core 1.9.7 @@ -3411,20 +3412,20 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for biojava-legacy 1.9.7: [INFO] -[INFO] biojava-legacy ..................................... SUCCESS [ 19.548 s] -[INFO] bytecode ........................................... SUCCESS [ 3.829 s] -[INFO] core ............................................... SUCCESS [ 19.530 s] -[INFO] alignment .......................................... SUCCESS [ 4.073 s] -[INFO] biosql ............................................. SUCCESS [ 4.146 s] -[INFO] blast .............................................. SUCCESS [ 3.135 s] -[INFO] sequencing ......................................... SUCCESS [ 3.213 s] -[INFO] gui ................................................ SUCCESS [ 6.978 s] -[INFO] phylo .............................................. SUCCESS [ 3.494 s] +[INFO] biojava-legacy ..................................... SUCCESS [ 58.443 s] +[INFO] bytecode ........................................... SUCCESS [ 9.965 s] +[INFO] core ............................................... SUCCESS [ 41.399 s] +[INFO] alignment .......................................... SUCCESS [ 6.521 s] +[INFO] biosql ............................................. SUCCESS [ 5.568 s] +[INFO] blast .............................................. SUCCESS [ 5.518 s] +[INFO] sequencing ......................................... SUCCESS [ 8.130 s] +[INFO] gui ................................................ SUCCESS [ 11.068 s] +[INFO] phylo .............................................. SUCCESS [ 6.853 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 01:08 min -[INFO] Finished at: 2025-06-02T15:19:57Z +[INFO] Total time: 02:35 min +[INFO] Finished at: 2024-04-30T09:10:41Z [INFO] ------------------------------------------------------------------------ dh_auto_test /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/biojava-live-1.9.7\+dfsg -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/biojava-live-1.9.7\+dfsg/debian -Dmaven.repo.local=/build/reproducible-path/biojava-live-1.9.7\+dfsg/debian/maven-repo --batch-mode test @@ -3487,6 +3488,29 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- +[INFO] Running org.biojavax.DummyCrossReferenceResolverTest +testGetRemoteBioEntry +testGetRemoteSymbolList +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.173 s - in org.biojavax.DummyCrossReferenceResolverTest +[INFO] Running org.biojavax.SimpleRankedCrossRefTest +testToString +testGetCrossRef +testCompareTo +testGetRank +testHashCode +testEquals +testSetRank +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.031 s - in org.biojavax.SimpleRankedCrossRefTest +[INFO] Running org.biojavax.SimpleCommentTest +testSetComment +testToString +testCompareTo +testGetRank +testHashCode +testGetComment +testEquals +testSetRank +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.biojavax.SimpleCommentTest [INFO] Running org.biojavax.SimpleDocRefAuthorTest testIsConsortium testToString @@ -3495,44 +3519,75 @@ testHashCode testEquals testGetExtendedName -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 s - in org.biojavax.SimpleDocRefAuthorTest -[INFO] Running org.biojavax.SimpleNamespaceTest -testGetAuthority -testSetDescription +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.024 s - in org.biojavax.SimpleDocRefAuthorTest +[INFO] Running org.biojavax.EmptyRichAnnotationTest +testGetNoteSet +testAddNote +testAsMap +testClear +testKeys +testGetNote +testSetNoteSet +testContains +testSetProperty +testRemoveNote +testGetProperty +testRemoveProperty +testEquals +testContainsProperty +[INFO] Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 s - in org.biojavax.EmptyRichAnnotationTest +[INFO] Running org.biojavax.SimpleNoteTest +testGetValue testToString -testGetAcronym testCompareTo -testGetName -testSetAuthority -testGetDescription +testGetRank +testGetTerm testHashCode -testSetAcronym testEquals -testGetURI -testSetURI -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojavax.SimpleNamespaceTest -[INFO] Running org.biojavax.ontology.SimpleComparableTermTest +testSetRank +testSetTerm +testSetValue +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in org.biojavax.SimpleNoteTest +[INFO] Running org.biojavax.CrossReferenceResolutionExceptionTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.CrossReferenceResolutionExceptionTest +[INFO] Running org.biojavax.SimpleCrossRefTest +testGetNoteSet +testGetAccession +testToString +testCompareTo +testGetAnnotation +testSetNoteSet +testGetVersion +testHashCode +testGetDbname +testEquals +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.032 s - in org.biojavax.SimpleCrossRefTest +[INFO] Running org.biojavax.ontology.SimpleComparableOntologyTest +testSetTripleSet +testCreateTriple +testContainsTriple +testGetTerms +testCreateVariable +testContainsTerm +testGetTermSet testSetDescription -testGetRankedCrossRefs testToString -testGetSynonyms +testGetOrCreateTerm testCompareTo -testAddSynonym +testGetTriples testGetName -testGetOntology -testSetRankedCrossRefs -testGetIdentifier -testGetAnnotation -testRemoveRankedCrossRef +testGetTerm +testGetOrImportTerm +testGetTripleSet +testCreateTerm testGetDescription -testSetIdentifier +testSetTermSet testHashCode +testDeleteTerm testEquals -testAddRankedCrossRef -testRemoveSynonym -testSetObsolete -testGetObsolete -[INFO] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 s - in org.biojavax.ontology.SimpleComparableTermTest +testGetOps +testImportTerm +[INFO] Tests run: 24, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.022 s - in org.biojavax.ontology.SimpleComparableOntologyTest [INFO] Running org.biojavax.ontology.SimpleComparableTripleTest testGetSubject testSetDescriptors @@ -3552,47 +3607,75 @@ testEquals testGetObject testRemoveSynonym -[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.biojavax.ontology.SimpleComparableTripleTest -[INFO] Running org.biojavax.ontology.SimpleComparableOntologyTest -testSetTripleSet -testCreateTriple -testContainsTriple -testGetTerms -testCreateVariable -testContainsTerm -testGetTermSet +[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 s - in org.biojavax.ontology.SimpleComparableTripleTest +[INFO] Running org.biojavax.ontology.SimpleComparableTermTest testSetDescription +testGetRankedCrossRefs testToString -testGetOrCreateTerm +testGetSynonyms testCompareTo -testGetTriples +testAddSynonym testGetName -testGetTerm -testGetOrImportTerm -testGetTripleSet -testCreateTerm +testGetOntology +testSetRankedCrossRefs +testGetIdentifier +testGetAnnotation +testRemoveRankedCrossRef testGetDescription -testSetTermSet +testSetIdentifier testHashCode -testDeleteTerm testEquals -testGetOps -testImportTerm -[INFO] Tests run: 24, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.biojavax.ontology.SimpleComparableOntologyTest -[INFO] Running org.biojavax.CrossReferenceResolutionExceptionTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.CrossReferenceResolutionExceptionTest -[INFO] Running org.biojavax.SimpleCrossRefTest +testAddRankedCrossRef +testRemoveSynonym +testSetObsolete +testGetObsolete +[INFO] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 s - in org.biojavax.ontology.SimpleComparableTermTest +[INFO] Running org.biojavax.ga.util.WeightedSetTest +[INFO] Tests run: 16, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.biojavax.ga.util.WeightedSetTest +[INFO] Running org.biojavax.ga.util.GAToolsTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.util.GAToolsTest +[INFO] Running org.biojavax.ga.impl.SimplePopulationTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.impl.SimplePopulationTest +[INFO] Running org.biojavax.ga.impl.SimpleOrganismTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.ga.impl.SimpleOrganismTest +[INFO] Running org.biojavax.ga.functions.AbstractMutationFunctionTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.ga.functions.AbstractMutationFunctionTest +[INFO] Running org.biojavax.ga.functions.AbstractCrossOverFunctionTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.functions.AbstractCrossOverFunctionTest +[INFO] Running org.biojavax.ga.functions.SimpleCrossOverFunctionTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.functions.SimpleCrossOverFunctionTest +[INFO] Running org.biojavax.ga.functions.SimpleMutationFunctionTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.functions.SimpleMutationFunctionTest +[INFO] Running org.biojavax.ga.functions.ProportionalSelectionTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.functions.ProportionalSelectionTest +[INFO] Running org.biojavax.SimpleRichAnnotationTest testGetNoteSet -testGetAccession +testAddNote +testAsMap +testClear +testKeys testToString -testCompareTo -testGetAnnotation +testGetNote testSetNoteSet -testGetVersion +testContains +testGetPropertys +testSetProperty +testRemoveNote +testGetProperty +testRemoveProperty +testRemoveProperty2 +testContainsProperty +[INFO] Tests run: 16, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in org.biojavax.SimpleRichAnnotationTest +[INFO] Running org.biojavax.bio.taxa.SimpleNCBITaxonNameTest +testGetNameClass +testToString +testCompareTo +testSetNameClass +testGetName testHashCode -testGetDbname testEquals -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojavax.SimpleCrossRefTest +testSetName +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.bio.taxa.SimpleNCBITaxonNameTest [INFO] Running org.biojavax.bio.SimpleBioEntryTest testGetNamespace testGetNoteSet @@ -3626,27 +3709,26 @@ testGetDivision testSetTaxon testAddComment -[INFO] Tests run: 32, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 s - in org.biojavax.bio.SimpleBioEntryTest -[INFO] Running org.biojavax.bio.taxa.SimpleNCBITaxonNameTest -testGetNameClass -testToString -testCompareTo -testSetNameClass -testGetName -testHashCode +[INFO] Tests run: 32, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojavax.bio.SimpleBioEntryTest +[INFO] Running org.biojavax.bio.seq.CompoundRichLocationTest testEquals -testSetName -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.bio.taxa.SimpleNCBITaxonNameTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.216 s - in org.biojavax.bio.seq.CompoundRichLocationTest +[INFO] Running org.biojavax.bio.seq.RichLocationToolsTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.bio.seq.RichLocationToolsTest [INFO] Running org.biojavax.bio.seq.SimpleRichFeatureTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojavax.bio.seq.SimpleRichFeatureTest -[INFO] Running org.biojavax.bio.seq.io.INSDseqFormatTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.157 s - in org.biojavax.bio.seq.io.INSDseqFormatTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 s - in org.biojavax.bio.seq.SimpleRichFeatureTest +[INFO] Running org.biojavax.bio.seq.SimpleRichLocationTest +testEquals +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.bio.seq.SimpleRichLocationTest +[INFO] Running org.biojavax.bio.seq.MultiSourceCompoundRichLocationTest +testEquals +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.bio.seq.MultiSourceCompoundRichLocationTest [INFO] Running org.biojavax.bio.seq.io.Bug2255Test -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in org.biojavax.bio.seq.io.Bug2255Test -[INFO] Running org.biojavax.bio.seq.io.GenbankFormatTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.045 s - in org.biojavax.bio.seq.io.GenbankFormatTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 s - in org.biojavax.bio.seq.io.Bug2255Test +[INFO] Running org.biojavax.bio.seq.io.Bug2250_2256Test +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.295 s - in org.biojavax.bio.seq.io.Bug2250_2256Test [INFO] Running org.biojavax.bio.seq.io.UniProtFormatTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 s - in org.biojavax.bio.seq.io.UniProtFormatTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.285 s - in org.biojavax.bio.seq.io.UniProtFormatTest [INFO] Running org.biojavax.bio.seq.io.GenbankLocationParserTest Location 467: 467 Location 340..565: 340..565 @@ -3666,60 +3748,30 @@ Location J00194:100..202: J00194:100..202 Location (8298.8300)..10206: (8298.8300)..10206 Location join((8298.8300)..10206,1..855): join((8298.8300)..10206,1..855) -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojavax.bio.seq.io.GenbankLocationParserTest -[INFO] Running org.biojavax.bio.seq.io.Bug2250_2256Test -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.045 s - in org.biojavax.bio.seq.io.Bug2250_2256Test +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in org.biojavax.bio.seq.io.GenbankLocationParserTest +[INFO] Running org.biojavax.bio.seq.io.INSDseqFormatTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.107 s - in org.biojavax.bio.seq.io.INSDseqFormatTest [INFO] Running org.biojavax.bio.seq.io.EMBLFormatTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojavax.bio.seq.io.EMBLFormatTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.bio.seq.io.EMBLFormatTest [INFO] Running org.biojavax.bio.seq.io.Bug2249_2248Test -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojavax.bio.seq.io.Bug2249_2248Test -[INFO] Running org.biojavax.bio.seq.SimpleRichLocationTest -testEquals -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.bio.seq.SimpleRichLocationTest -[INFO] Running org.biojavax.bio.seq.MultiSourceCompoundRichLocationTest -testEquals -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.bio.seq.MultiSourceCompoundRichLocationTest -[INFO] Running org.biojavax.bio.seq.RichLocationToolsTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.bio.seq.RichLocationToolsTest -[INFO] Running org.biojavax.bio.seq.CompoundRichLocationTest -testEquals -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.bio.seq.CompoundRichLocationTest -[INFO] Running org.biojavax.SimpleDocRefTest -testGetTitle -testToString -testGetLocation -testSetCrossref -testGetCrossref -testCompareTo -testGetAuthors -testGetAuthorList -testHashCode -testSetRemark -testEquals -testGetCRC -testGetRemark -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.SimpleDocRefTest -[INFO] Running org.biojavax.SimpleRankedCrossRefTest -testToString -testGetCrossRef -testCompareTo -testGetRank -testHashCode -testEquals -testSetRank -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.SimpleRankedCrossRefTest -[INFO] Running org.biojavax.SimpleNoteTest -testGetValue +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 s - in org.biojavax.bio.seq.io.Bug2249_2248Test +[INFO] Running org.biojavax.bio.seq.io.GenbankFormatTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.271 s - in org.biojavax.bio.seq.io.GenbankFormatTest +[INFO] Running org.biojavax.SimpleNamespaceTest +testGetAuthority +testSetDescription testToString +testGetAcronym testCompareTo -testGetRank -testGetTerm +testGetName +testSetAuthority +testGetDescription testHashCode +testSetAcronym testEquals -testSetRank -testSetTerm -testSetValue -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.SimpleNoteTest +testGetURI +testSetURI +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in org.biojavax.SimpleNamespaceTest [INFO] Running org.biojavax.SimpleRankedDocRefTest testGetStart testSetLocation @@ -3731,86 +3783,29 @@ testEquals testGetEnd testSetRank -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.SimpleRankedDocRefTest -[INFO] Running org.biojavax.SimpleRichAnnotationTest -testGetNoteSet -testAddNote -testAsMap -testClear -testKeys -testToString -testGetNote -testSetNoteSet -testContains -testGetPropertys -testSetProperty -testRemoveNote -testGetProperty -testRemoveProperty -testRemoveProperty2 -testContainsProperty -[INFO] Tests run: 16, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojavax.SimpleRichAnnotationTest -[INFO] Running org.biojavax.DummyCrossReferenceResolverTest -testGetRemoteBioEntry -testGetRemoteSymbolList -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.DummyCrossReferenceResolverTest -[INFO] Running org.biojavax.EmptyRichAnnotationTest -testGetNoteSet -testAddNote -testAsMap -testClear -testKeys -testGetNote -testSetNoteSet -testContains -testSetProperty -testRemoveNote -testGetProperty -testRemoveProperty -testEquals -testContainsProperty -[INFO] Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojavax.EmptyRichAnnotationTest -[INFO] Running org.biojavax.SimpleCommentTest -testSetComment +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojavax.SimpleRankedDocRefTest +[INFO] Running org.biojavax.SimpleDocRefTest +testGetTitle testToString +testGetLocation +testSetCrossref +testGetCrossref testCompareTo -testGetRank +testGetAuthors +testGetAuthorList testHashCode -testGetComment +testSetRemark testEquals -testSetRank -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.SimpleCommentTest -[INFO] Running org.biojavax.ga.util.GAToolsTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojavax.ga.util.GAToolsTest -[INFO] Running org.biojavax.ga.util.WeightedSetTest -[INFO] Tests run: 16, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojavax.ga.util.WeightedSetTest -[INFO] Running org.biojavax.ga.functions.AbstractMutationFunctionTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.functions.AbstractMutationFunctionTest -[INFO] Running org.biojavax.ga.functions.AbstractCrossOverFunctionTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.functions.AbstractCrossOverFunctionTest -[INFO] Running org.biojavax.ga.functions.SimpleMutationFunctionTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.functions.SimpleMutationFunctionTest -[INFO] Running org.biojavax.ga.functions.SimpleCrossOverFunctionTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.functions.SimpleCrossOverFunctionTest -[INFO] Running org.biojavax.ga.functions.ProportionalSelectionTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.functions.ProportionalSelectionTest -[INFO] Running org.biojavax.ga.impl.SimpleOrganismTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.impl.SimpleOrganismTest -[INFO] Running org.biojavax.ga.impl.SimplePopulationTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.impl.SimplePopulationTest -[INFO] Running org.biojava.directory.RegistryConfigurationTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.directory.RegistryConfigurationTest -[INFO] Running org.biojava.directory.OBDARegistryParserTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.directory.OBDARegistryParserTest -[INFO] Running org.biojava.directory.SystemRegistryTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in org.biojava.directory.SystemRegistryTest +testGetCRC +testGetRemark +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.SimpleDocRefTest [INFO] Running org.biojava.naming.ObdaInitialContextFactoryTest Reached Attributes: No attributes -Binding: urn -> org.biojava.naming.ObdaContext@516be40f +Binding: urn -> org.biojava.naming.ObdaContext@1188e820 Reached urn Attributes: No attributes -Binding: open-bio.org -> org.biojava.naming.ObdaContext@3c0a50da +Binding: open-bio.org -> org.biojava.naming.ObdaContext@2f490758 Reached urn:open-bio.org Attributes: {description=description: This is the root namespace for all OBDA URNs. All OBDA URNs should be prefixed @@ -3818,7 +3813,7 @@ module obda-specs in the cvs repository located at pub.open-bio.org:/home/repository/obf-common. } -Binding: type -> org.biojava.naming.ObdaContext@77be656f +Binding: type -> org.biojava.naming.ObdaContext@40f08448 Reached urn:open-bio.org:type Attributes: {description=description: The namespace for URNs that identify data types. It is expected that the types @@ -3827,7 +3822,7 @@ type namespace that is not of this type is not conforming to the OBDA specification for this namespace. } -Binding: type -> org.biojava.naming.ObdaContext@19dc67c2 +Binding: type -> org.biojava.naming.ObdaContext@276438c9 Reached urn:open-bio.org:type:type Attributes: {description=description: The OBDA URN that identifies the concept of 'type'. In a given language, this @@ -3836,7 +3831,7 @@ ontology. This is not important. The important thing is that we have unique identifiers for common types that all projects use and interact with. } -Binding: format -> org.biojava.naming.ObdaContext@221af3c0 +Binding: format -> org.biojava.naming.ObdaContext@588df31b Reached urn:open-bio.org:type:format Attributes: {description=description: A file format. Many file formats are used in bioinformatics. Entities of this @@ -3847,7 +3842,7 @@ type of URN is purely there to identify the format of the stream, not the manner in which it should be processed. } -Binding: alphabet -> org.biojava.naming.ObdaContext@62bd765 +Binding: alphabet -> org.biojava.naming.ObdaContext@33b37288 Reached urn:open-bio.org:type:alphabet Attributes: {description=description: A biological sequence alphabet. Biological sequences are often represented as @@ -3859,14 +3854,14 @@ Alphabets do not define a mapping to or from strings, but should be used wherever the type of the content of a sequence needs to be stated. } -Binding: format -> org.biojava.naming.ObdaContext@23a5fd2 +Binding: format -> org.biojava.naming.ObdaContext@77a57272 Reached urn:open-bio.org:format Attributes: {description=description: A namespace for OBDA URNs that define formats. All URNs within this namespace must be of the type urn:open-bio.org:type:format. Any URN in this namespace that is not of that type is not a valid OBDA URN. } -Binding: enzyme -> org.biojava.naming.ObdaContext@78a2da20 +Binding: enzyme -> org.biojava.naming.ObdaContext@7181ae3f Reached urn:open-bio.org:format:enzyme Attributes: {description=description: The Enzyme database entry format. The enzyme database can be downloaded from @@ -3882,29 +3877,29 @@ ftp://ftp.ebi.ac.uk/pub/databases/enzyme/enzyser.txt } -Binding: genbank -> org.biojava.naming.ObdaContext@dd3b207 +Binding: genbank -> org.biojava.naming.ObdaContext@46238e3f Reached urn:open-bio.org:format:genbank Attributes: {description=description: The GENBANK file format associated with the GENBANK sequence database. } -Binding: swissprot -> org.biojava.naming.ObdaContext@551bdc27 +Binding: swissprot -> org.biojava.naming.ObdaContext@6e2c9341 Reached urn:open-bio.org:format:swissprot Attributes: {description=description: The SWISSPROT file format as used in the SWISSPROT sequence database. } -Binding: embl -> org.biojava.naming.ObdaContext@58fdd99 +Binding: embl -> org.biojava.naming.ObdaContext@32464a14 Reached urn:open-bio.org:format:embl Attributes: {description=description: The EMBL file format associated with entries in the EMBL sequence database. } -Binding: alphabet -> org.biojava.naming.ObdaContext@6b1274d2 +Binding: alphabet -> org.biojava.naming.ObdaContext@4e4aea35 Reached urn:open-bio.org:alphabet Attributes: {description=description: A namespace within which to store alphabet identifiers. Alphabets should represent URNs that represent objects of the type identified by urn:open-bio.org:type:alphabet, and any useage outside of this is not supported. } -Binding: rna -> org.biojava.naming.ObdaContext@7bc1a03d +Binding: rna -> org.biojava.naming.ObdaContext@1442d7b5 Reached urn:open-bio.org:alphabet:rna Attributes: {description=description: The RNA alphabet. RNA is composed from four nucleotides. Read a biochemistry @@ -3912,7 +3907,7 @@ are reprsented by the four letters a, g, c and u. However, this is not a formal requirement for a resource to declare this alphabet as its type. } -Binding: protein -> org.biojava.naming.ObdaContext@70b0b186 +Binding: protein -> org.biojava.naming.ObdaContext@1efee8e7 Reached urn:open-bio.org:alphabet:protein Attributes: {description=description: The protein alphabet. Proteins are composed from amino-acids. To find out more, @@ -3920,7 +3915,7 @@ to be represented by characters, but this is not a formal requirement for a resource to publish an alphabet equal to this identifier. } -Binding: dna -> org.biojava.naming.ObdaContext@ba8d91c +Binding: dna -> org.biojava.naming.ObdaContext@1ee807c6 Reached urn:open-bio.org:alphabet:dna Attributes: {description=description: The DNA alphabet. DNA is composed from four nucleotides. Read a biochemistry @@ -3928,15 +3923,15 @@ are reprsented by the four letters a, g, c and t. However, this is not a formal requirement for a resource to declare this alphabet as its type. } -lookup: 'urn:open-bio.org:format:embl' for {urn=org.biojava.naming.ObdaContext@58c1c010} +lookup: 'urn:open-bio.org:format:embl' for {urn=org.biojava.naming.ObdaContext@45afc369} My component is urn:open-bio.org:format:embl -lookup: 'open-bio.org:format:embl' for {open-bio.org=org.biojava.naming.ObdaContext@61d47554} +lookup: 'open-bio.org:format:embl' for {open-bio.org=org.biojava.naming.ObdaContext@49c43f4e} My component is open-bio.org:format:embl -lookup: 'format:embl' for {type=org.biojava.naming.ObdaContext@69b794e2, format=org.biojava.naming.ObdaContext@3f200884, alphabet=org.biojava.naming.ObdaContext@4d339552} +lookup: 'format:embl' for {type=org.biojava.naming.ObdaContext@290dbf45, format=org.biojava.naming.ObdaContext@12028586, alphabet=org.biojava.naming.ObdaContext@17776a8} My component is format:embl -lookup: 'embl' for {enzyme=org.biojava.naming.ObdaContext@f0f2775, genbank=org.biojava.naming.ObdaContext@5a4aa2f2, swissprot=org.biojava.naming.ObdaContext@6591f517, embl=org.biojava.naming.ObdaContext@345965f2} +lookup: 'embl' for {enzyme=org.biojava.naming.ObdaContext@69a10787, genbank=org.biojava.naming.ObdaContext@2d127a61, swissprot=org.biojava.naming.ObdaContext@2bbaf4f0, embl=org.biojava.naming.ObdaContext@11c20519} My component is embl -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 s - in org.biojava.naming.ObdaInitialContextFactoryTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.055 s - in org.biojava.naming.ObdaInitialContextFactoryTest [INFO] Running org.biojava.naming.ObdaUriParserTest urn:obda.org:format:embl/ac @@ -3944,67 +3939,46 @@ oneName lead: [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.naming.ObdaUriParserTest -[INFO] Running org.biojava.utils.automata.NfaTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojava.utils.automata.NfaTest -[INFO] Running org.biojava.utils.RepeatedCharSequenceTest -JAM -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.utils.RepeatedCharSequenceTest -[INFO] Running org.biojava.utils.process.AllTests -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.048 s - in org.biojava.utils.process.AllTests -[INFO] Running org.biojava.utils.process.ExternalProcessTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.047 s - in org.biojava.utils.process.ExternalProcessTest -[INFO] Running org.biojava.utils.ListToolsTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.utils.ListToolsTest -[INFO] Running org.biojava.utils.regex.RegexTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojava.utils.regex.RegexTest -[INFO] Running org.biojava.utils.regex.PatternCheckerTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.utils.regex.PatternCheckerTest -[INFO] Running org.biojava.utils.lsid.LifeScienceIdentifierTest -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in org.biojava.utils.lsid.LifeScienceIdentifierTest -[INFO] Running org.biojava.utils.walker.WalkerTest -Increasing counter: Overlaps([20,50]) -Increasing counter: Overlaps([20,50]) -Increasing counter: ByClass(org.biojava.bio.seq.StrandedFeature) -Increasing counter: And(Overlaps([20,50]) , ByClass(org.biojava.bio.seq.StrandedFeature)) -Increasing counter: Overlaps([20,50]) -Increasing counter: ByClass(org.biojava.bio.seq.StrandedFeature) -Increasing counter: ByClass(org.biojava.bio.seq.ComponentFeature) -Increasing counter: Or(ByClass(org.biojava.bio.seq.StrandedFeature) , ByClass(org.biojava.bio.seq.ComponentFeature)) -Increasing counter: And(Overlaps([20,50]) , Or(ByClass(org.biojava.bio.seq.StrandedFeature) , ByClass(org.biojava.bio.seq.ComponentFeature))) -OverlapsLocation: Overlaps([20,50]) -Feature: ByClass(org.biojava.bio.seq.StrandedFeature) -OverlapsLocation: Overlaps([20,50]) -Feature: ByClass(org.biojava.bio.seq.StrandedFeature) -Feature: ByClass(org.biojava.bio.seq.ComponentFeature) -Feature: Or(ByClass(org.biojava.bio.seq.StrandedFeature) , ByClass(org.biojava.bio.seq.ComponentFeature)) -Feature: And(Overlaps([20,50]) , Or(ByClass(org.biojava.bio.seq.StrandedFeature) , ByClass(org.biojava.bio.seq.ComponentFeature))) -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 s - in org.biojava.utils.walker.WalkerTest -[INFO] Running org.biojava.utils.walker.WalkerFactoryTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.biojava.utils.walker.WalkerFactoryTest -[INFO] Running org.biojava.utils.SmallMapTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.utils.SmallMapTest +[INFO] Running org.biojava.directory.OBDARegistryParserTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.directory.OBDARegistryParserTest +[INFO] Running org.biojava.directory.SystemRegistryTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.028 s - in org.biojava.directory.SystemRegistryTest +[INFO] Running org.biojava.directory.RegistryConfigurationTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.directory.RegistryConfigurationTest +[INFO] Running org.biojava.ontology.TripleImplTest +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.027 s - in org.biojava.ontology.TripleImplTest [INFO] Running org.biojava.ontology.OntologyTest -[INFO] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in org.biojava.ontology.OntologyTest -[INFO] Running org.biojava.ontology.TermImplTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.ontology.TermImplTest +[INFO] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in org.biojava.ontology.OntologyTest [INFO] Running org.biojava.ontology.ParseOBOFileTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.08 s - in org.biojava.ontology.ParseOBOFileTest -[INFO] Running org.biojava.ontology.TripleImplTest -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.ontology.TripleImplTest -[INFO] Running org.biojava.bio.AnnotationTypeTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojava.bio.AnnotationTypeTest -[INFO] Running org.biojava.bio.program.indexdb.IndexToolsTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.068 s - in org.biojava.bio.program.indexdb.IndexToolsTest -[INFO] Running org.biojava.bio.program.phred.PhredToolsTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojava.bio.program.phred.PhredToolsTest -[INFO] Running org.biojava.bio.proteomics.MassCalcTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojava.bio.proteomics.MassCalcTest -[INFO] Running org.biojava.bio.proteomics.IsoelectricPointCalcTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.proteomics.IsoelectricPointCalcTest -[INFO] Running org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest -java.lang.NullPointerException: name is null. - at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDB.table(SimpleSymbolPropertyTableDB.java:172) - at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest.testTable(SimpleSymbolPropertyTableDBTest.java:126) +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.537 s - in org.biojava.ontology.ParseOBOFileTest +[INFO] Running org.biojava.ontology.TermImplTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.ontology.TermImplTest +[INFO] Running org.biojava.bio.search.SeqContentPatternTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.search.SeqContentPatternTest +[INFO] Running org.biojava.bio.search.MaxMismatchPatternTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.search.MaxMismatchPatternTest +[INFO] Running org.biojava.bio.search.SimpleSeqSimilaritySearchResultTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojava.bio.search.SimpleSeqSimilaritySearchResultTest +[INFO] Running org.biojava.bio.search.SimpleSeqSimilaritySearchHitTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.036 s - in org.biojava.bio.search.SimpleSeqSimilaritySearchHitTest +[INFO] Running org.biojava.bio.search.SimpleSeqSimilaritySearchSubHitTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.search.SimpleSeqSimilaritySearchSubHitTest +[INFO] Running org.biojava.bio.dist.TranslatedDistributionTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.dist.TranslatedDistributionTest +[INFO] Running org.biojava.bio.dist.DistributionToolsTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.201 s - in org.biojava.bio.dist.DistributionToolsTest +[INFO] Running org.biojava.bio.dist.DistSerTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.284 s - in org.biojava.bio.dist.DistSerTest +[INFO] Running org.biojava.bio.dist.DistributionTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.biojava.bio.dist.DistributionTest +[INFO] Running org.biojava.bio.proteomics.aaindex.AAindexStreamReaderTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.proteomics.aaindex.AAindexStreamReaderTest +[INFO] Running org.biojava.bio.proteomics.aaindex.AAindexTest +org.biojava.bio.symbol.IllegalSymbolException: Symbol adenine not found in alphabet PROTEIN + at org.biojava.bio.symbol.AbstractAlphabet.validate(AbstractAlphabet.java:327) + at org.biojava.bio.symbol.AlphabetManager$ImmutableWellKnownAlphabetWrapper.validate(AlphabetManager.java:1601) + at org.biojava.bio.symbol.SimpleSymbolPropertyTable.getDoubleValue(SimpleSymbolPropertyTable.java:67) + at org.biojava.bio.proteomics.aaindex.AAindexTest.testDoubleValue(AAindexTest.java:189) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) @@ -4026,9 +4000,11 @@ at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:345) at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:126) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:418) -org.biojava.bio.seq.db.IllegalIDException: No table found with name test. - at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDB.table(SimpleSymbolPropertyTableDB.java:175) - at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest.testTable(SimpleSymbolPropertyTableDBTest.java:134) +[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in org.biojava.bio.proteomics.aaindex.AAindexTest +[INFO] Running org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest +java.lang.NullPointerException: name is null. + at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDB.table(SimpleSymbolPropertyTableDB.java:172) + at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest.testTable(SimpleSymbolPropertyTableDBTest.java:126) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) @@ -4050,9 +4026,9 @@ at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:345) at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:126) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:418) -java.lang.NullPointerException: table is null. - at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDB.addTable(SimpleSymbolPropertyTableDB.java:145) - at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest.testAddTable(SimpleSymbolPropertyTableDBTest.java:113) +org.biojava.bio.seq.db.IllegalIDException: No table found with name test. + at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDB.table(SimpleSymbolPropertyTableDB.java:175) + at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest.testTable(SimpleSymbolPropertyTableDBTest.java:134) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) @@ -4074,13 +4050,9 @@ at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:345) at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:126) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:418) -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest -[INFO] Running org.biojava.bio.proteomics.aaindex.AAindexTest -org.biojava.bio.symbol.IllegalSymbolException: Symbol adenine not found in alphabet PROTEIN - at org.biojava.bio.symbol.AbstractAlphabet.validate(AbstractAlphabet.java:327) - at org.biojava.bio.symbol.AlphabetManager$ImmutableWellKnownAlphabetWrapper.validate(AlphabetManager.java:1601) - at org.biojava.bio.symbol.SimpleSymbolPropertyTable.getDoubleValue(SimpleSymbolPropertyTable.java:67) - at org.biojava.bio.proteomics.aaindex.AAindexTest.testDoubleValue(AAindexTest.java:189) +java.lang.NullPointerException: table is null. + at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDB.addTable(SimpleSymbolPropertyTableDB.java:145) + at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest.testAddTable(SimpleSymbolPropertyTableDBTest.java:113) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) @@ -4102,72 +4074,147 @@ at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:345) at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:126) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:418) -[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojava.bio.proteomics.aaindex.AAindexTest -[INFO] Running org.biojava.bio.proteomics.aaindex.AAindexStreamReaderTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.03 s - in org.biojava.bio.proteomics.aaindex.AAindexStreamReaderTest -[INFO] Running org.biojava.bio.molbio.RestrictionEnzymeTest -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 s - in org.biojava.bio.molbio.RestrictionEnzymeTest -[INFO] Running org.biojava.bio.molbio.RestrictionEnzymeManagerTest -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.biojava.bio.molbio.RestrictionEnzymeManagerTest -[INFO] Running org.biojava.bio.MergeAnnotationTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.MergeAnnotationTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 s - in org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest +[INFO] Running org.biojava.bio.proteomics.IsoelectricPointCalcTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.proteomics.IsoelectricPointCalcTest +[INFO] Running org.biojava.bio.proteomics.MassCalcTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.proteomics.MassCalcTest [INFO] Running org.biojava.bio.dp.DPSerializationTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.046 s - in org.biojava.bio.dp.DPSerializationTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in org.biojava.bio.dp.DPSerializationTest [INFO] Running org.biojava.bio.dp.MarkovModelEventTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojava.bio.dp.MarkovModelEventTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.biojava.bio.dp.MarkovModelEventTest [INFO] Running org.biojava.bio.dp.EmissionStateEventTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.dp.EmissionStateEventTest -[INFO] Running org.biojava.bio.seq.FilterUtilsTest -[INFO] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 s - in org.biojava.bio.seq.FilterUtilsTest -[INFO] Running org.biojava.bio.seq.RNAToolsTest -[INFO] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.biojava.bio.seq.RNAToolsTest +[INFO] Running org.biojava.bio.MergeAnnotationTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.MergeAnnotationTest +[INFO] Running org.biojava.bio.molbio.RestrictionEnzymeManagerTest +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 s - in org.biojava.bio.molbio.RestrictionEnzymeManagerTest +[INFO] Running org.biojava.bio.molbio.RestrictionEnzymeTest +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.molbio.RestrictionEnzymeTest +[INFO] Running org.biojava.bio.symbol.SimpleSymbolListTest +[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojava.bio.symbol.SimpleSymbolListTest +[INFO] Running org.biojava.bio.symbol.AlphabetSerializationTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.069 s - in org.biojava.bio.symbol.AlphabetSerializationTest +[INFO] Running org.biojava.bio.symbol.CompoundLocationTest +[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.041 s - in org.biojava.bio.symbol.CompoundLocationTest +[INFO] Running org.biojava.bio.symbol.SimpleCodonPrefTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.061 s - in org.biojava.bio.symbol.SimpleCodonPrefTest +[INFO] Running org.biojava.bio.symbol.FundamentalAtomicSymbolEventTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.FundamentalAtomicSymbolEventTest +[INFO] Running org.biojava.bio.symbol.TestSoftMaskedAlphabet +[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.biojava.bio.symbol.TestSoftMaskedAlphabet +[INFO] Running org.biojava.bio.symbol.TranslationTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.TranslationTest +[INFO] Running org.biojava.bio.symbol.SimpleSymbolEventTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.SimpleSymbolEventTest +[INFO] Running org.biojava.bio.symbol.SimpleBasisSymbolEventTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.SimpleBasisSymbolEventTest +[INFO] Running org.biojava.bio.symbol.MergeLocationTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.MergeLocationTest +[INFO] Running org.biojava.bio.symbol.SimpleAtomicSymbolEventTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.SimpleAtomicSymbolEventTest +[INFO] Running org.biojava.bio.symbol.RangeLocationTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.RangeLocationTest +[INFO] Running org.biojava.bio.symbol.NameTokenizationTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.NameTokenizationTest +[INFO] Running org.biojava.bio.symbol.UkkonenSuffixTreeTest +Adding symbol list taccaccagga$ +Adding symbol list taccaccagga$ +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.057 s - in org.biojava.bio.symbol.UkkonenSuffixTreeTest +[INFO] Running org.biojava.bio.symbol.CodonPrefToolsTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.CodonPrefToolsTest +[INFO] Running org.biojava.bio.symbol.SimpleWobbleDistributionTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.SimpleWobbleDistributionTest +[INFO] Running org.biojava.bio.symbol.PointLocationTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.PointLocationTest +[INFO] Running org.biojava.bio.symbol.IndexedNoAmbPackTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.IndexedNoAmbPackTest +[INFO] Running org.biojava.bio.symbol.MotifToolsTest +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.MotifToolsTest +[INFO] Running org.biojava.bio.symbol.CircularLocationTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.CircularLocationTest +[INFO] Running org.biojava.bio.symbol.CrossProductTokenizationTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.CrossProductTokenizationTest +[INFO] Running org.biojava.bio.symbol.GappedSymbolListTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.GappedSymbolListTest +[INFO] Running org.biojava.bio.symbol.AlphabetManagerTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.AlphabetManagerTest +[INFO] Running org.biojava.bio.symbol.SymbolListTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.915 s - in org.biojava.bio.symbol.SymbolListTest +[INFO] Running org.biojava.bio.symbol.IntegerAlphabetTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.IntegerAlphabetTest +[INFO] Running org.biojava.bio.symbol.SymbolSerializationTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.SymbolSerializationTest +[INFO] Running org.biojava.bio.symbol.LinearAlphabetIndexTest +symbolForIndex +getAlphabet +indexForSymbol +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.LinearAlphabetIndexTest +[INFO] Running org.biojava.bio.symbol.CrossProductAlphabetIndexTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.898 s - in org.biojava.bio.symbol.CrossProductAlphabetIndexTest +[INFO] Running org.biojava.bio.symbol.DoubleAlphabetTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.DoubleAlphabetTest +[INFO] Running org.biojava.bio.symbol.BetweenLocationTest +[INFO] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.BetweenLocationTest +[INFO] Running org.biojava.bio.program.phred.PhredToolsTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.program.phred.PhredToolsTest +[INFO] Running org.biojava.bio.program.indexdb.IndexToolsTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.05 s - in org.biojava.bio.program.indexdb.IndexToolsTest [INFO] Running org.biojava.bio.seq.CircularSequenceTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojava.bio.seq.CircularSequenceTest -[INFO] Running org.biojava.bio.seq.DNAToolsTest -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.seq.DNAToolsTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojava.bio.seq.CircularSequenceTest +[INFO] Running org.biojava.bio.seq.SimpleAssemblyTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.043 s - in org.biojava.bio.seq.SimpleAssemblyTest +[INFO] Running org.biojava.bio.seq.MergeFeatureHolderTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.MergeFeatureHolderTest +[INFO] Running org.biojava.bio.seq.FilterUtilsTest +[INFO] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 s - in org.biojava.bio.seq.FilterUtilsTest [INFO] Running org.biojava.bio.seq.NewSimpleAssemblyTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in org.biojava.bio.seq.NewSimpleAssemblyTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.seq.NewSimpleAssemblyTest +[INFO] Running org.biojava.bio.seq.DNAToolsTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.DNAToolsTest +[INFO] Running org.biojava.bio.seq.filter.FilterTransformerTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 s - in org.biojava.bio.seq.filter.FilterTransformerTest +[INFO] Running org.biojava.bio.seq.ProteinToolsTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.ProteinToolsTest +[INFO] Running org.biojava.bio.seq.io.SeqIOToolsTest +idb length: 79 +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.637 s - in org.biojava.bio.seq.io.SeqIOToolsTest +[INFO] Running org.biojava.bio.seq.io.LocationFormatterTest +[INFO] Tests run: 26, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.022 s - in org.biojava.bio.seq.io.LocationFormatterTest [INFO] Running org.biojava.bio.seq.io.SmartSequenceBuilderTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.457 s - in org.biojava.bio.seq.io.SmartSequenceBuilderTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.059 s - in org.biojava.bio.seq.io.SmartSequenceBuilderTest [INFO] Running org.biojava.bio.seq.io.SymbolListCharSequenceTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.io.SymbolListCharSequenceTest -[INFO] Running org.biojava.bio.seq.io.SeqIOToolsTest -idb length: 79 -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.257 s - in org.biojava.bio.seq.io.SeqIOToolsTest -[INFO] Running org.biojava.bio.seq.io.filterxml.FilterXMLTest -[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.032 s - in org.biojava.bio.seq.io.filterxml.FilterXMLTest [INFO] Running org.biojava.bio.seq.io.MSFAlignmentFormatTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojava.bio.seq.io.MSFAlignmentFormatTest -[INFO] Running org.biojava.bio.seq.io.LocationFormatterTest -[INFO] Tests run: 26, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.biojava.bio.seq.io.LocationFormatterTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.io.MSFAlignmentFormatTest +[INFO] Running org.biojava.bio.seq.io.filterxml.FilterXMLTest +[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.076 s - in org.biojava.bio.seq.io.filterxml.FilterXMLTest +[INFO] Running org.biojava.bio.seq.SeqSerializationTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.062 s - in org.biojava.bio.seq.SeqSerializationTest +[INFO] Running org.biojava.bio.seq.FeatureFilterTest +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.seq.FeatureFilterTest [INFO] Running org.biojava.bio.seq.project.ProjectedFeatureHolderTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.biojava.bio.seq.project.ProjectedFeatureHolderTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.biojava.bio.seq.project.ProjectedFeatureHolderTest +[INFO] Running org.biojava.bio.seq.homol.SimpleSimilarityPairFeatureTest +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in org.biojava.bio.seq.homol.SimpleSimilarityPairFeatureTest +[INFO] Running org.biojava.bio.seq.FeatureHolderUtilsTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.seq.FeatureHolderUtilsTest +[INFO] Running org.biojava.bio.seq.RNAToolsTest +[INFO] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in org.biojava.bio.seq.RNAToolsTest [INFO] Running org.biojava.bio.seq.db.EmblCDROMIndexStoreTest -[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in org.biojava.bio.seq.db.EmblCDROMIndexStoreTest +[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 s - in org.biojava.bio.seq.db.EmblCDROMIndexStoreTest [INFO] Running org.biojava.bio.seq.db.TestHashSequenceDB -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in org.biojava.bio.seq.db.TestHashSequenceDB +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojava.bio.seq.db.TestHashSequenceDB [INFO] Running org.biojava.bio.seq.db.HashSequenceDBTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.db.HashSequenceDBTest -[INFO] Running org.biojava.bio.seq.db.emblcd.DivisionLkpReaderTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.db.emblcd.DivisionLkpReaderTest [INFO] Running org.biojava.bio.seq.db.emblcd.EntryNamIdxReaderTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.seq.db.emblcd.EntryNamIdxReaderTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojava.bio.seq.db.emblcd.EntryNamIdxReaderTest [INFO] Running org.biojava.bio.seq.db.emblcd.EntryNamRandomAccessTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.db.emblcd.EntryNamRandomAccessTest -[INFO] Running org.biojava.bio.seq.SeqSerializationTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.03 s - in org.biojava.bio.seq.SeqSerializationTest -[INFO] Running org.biojava.bio.seq.SimpleAssemblyTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.seq.SimpleAssemblyTest -[INFO] Running org.biojava.bio.seq.homol.SimpleSimilarityPairFeatureTest -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.seq.homol.SimpleSimilarityPairFeatureTest -[INFO] Running org.biojava.bio.seq.FeatureHolderUtilsTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.FeatureHolderUtilsTest -[INFO] Running org.biojava.bio.seq.MergeFeatureHolderTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.seq.MergeFeatureHolderTest -[INFO] Running org.biojava.bio.seq.impl.ViewSeqSerializationTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in org.biojava.bio.seq.impl.ViewSeqSerializationTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.seq.db.emblcd.EntryNamRandomAccessTest +[INFO] Running org.biojava.bio.seq.db.emblcd.DivisionLkpReaderTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.seq.db.emblcd.DivisionLkpReaderTest [INFO] Running org.biojava.bio.seq.impl.GappedSequenceTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojava.bio.seq.impl.GappedSequenceTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in org.biojava.bio.seq.impl.GappedSequenceTest [INFO] Running org.biojava.bio.seq.impl.ViewSequenceTest template: class org.biojava.bio.seq.Feature$Template: location=[1,2] type=synth source=my head typeTerm=any sourceTerm=any annotation={geneID=braca1} orignal: class org.biojava.bio.seq.Feature$Template: location=[1,2] type=synth source=my head typeTerm=any sourceTerm=any annotation={geneID=braca1} @@ -4175,98 +4222,52 @@ template: class org.biojava.bio.seq.Feature$Template: location=[1,2] type=synth source=my head typeTerm=any sourceTerm=any annotation={geneID=braca1} orignal: class org.biojava.bio.seq.Feature$Template: location=[1,2] type=synth source=my head typeTerm=any sourceTerm=any annotation={geneID=braca1} copy: class org.biojava.bio.seq.Feature$Template: location=[1,2] type=synth source=my head typeTerm=any sourceTerm=any annotation={geneID=braca1} -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.seq.impl.ViewSequenceTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojava.bio.seq.impl.ViewSequenceTest +[INFO] Running org.biojava.bio.seq.impl.ViewSeqSerializationTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 s - in org.biojava.bio.seq.impl.ViewSeqSerializationTest [INFO] Running org.biojava.bio.seq.impl.SubSequenceTest -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in org.biojava.bio.seq.impl.SubSequenceTest -[INFO] Running org.biojava.bio.seq.filter.FilterTransformerTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojava.bio.seq.filter.FilterTransformerTest -[INFO] Running org.biojava.bio.seq.ProteinToolsTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.ProteinToolsTest -[INFO] Running org.biojava.bio.seq.FeatureFilterTest -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.FeatureFilterTest -[INFO] Running org.biojava.bio.search.SimpleSeqSimilaritySearchResultTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.search.SimpleSeqSimilaritySearchResultTest -[INFO] Running org.biojava.bio.search.MaxMismatchPatternTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.search.MaxMismatchPatternTest -[INFO] Running org.biojava.bio.search.SimpleSeqSimilaritySearchHitTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojava.bio.search.SimpleSeqSimilaritySearchHitTest -[INFO] Running org.biojava.bio.search.SeqContentPatternTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.search.SeqContentPatternTest -[INFO] Running org.biojava.bio.search.SimpleSeqSimilaritySearchSubHitTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.search.SimpleSeqSimilaritySearchSubHitTest -[INFO] Running org.biojava.bio.dist.DistributionTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.dist.DistributionTest -[INFO] Running org.biojava.bio.dist.TranslatedDistributionTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.dist.TranslatedDistributionTest -[INFO] Running org.biojava.bio.dist.DistSerTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 s - in org.biojava.bio.dist.DistSerTest -[INFO] Running org.biojava.bio.dist.DistributionToolsTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 s - in org.biojava.bio.dist.DistributionToolsTest -[INFO] Running org.biojava.bio.symbol.SimpleCodonPrefTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 s - in org.biojava.bio.symbol.SimpleCodonPrefTest -[INFO] Running org.biojava.bio.symbol.IntegerAlphabetTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.IntegerAlphabetTest -[INFO] Running org.biojava.bio.symbol.SymbolSerializationTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.SymbolSerializationTest -[INFO] Running org.biojava.bio.symbol.MotifToolsTest -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.MotifToolsTest -[INFO] Running org.biojava.bio.symbol.SimpleBasisSymbolEventTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.SimpleBasisSymbolEventTest -[INFO] Running org.biojava.bio.symbol.LinearAlphabetIndexTest -symbolForIndex -getAlphabet -indexForSymbol -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.LinearAlphabetIndexTest -[INFO] Running org.biojava.bio.symbol.PointLocationTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.PointLocationTest -[INFO] Running org.biojava.bio.symbol.BetweenLocationTest -[INFO] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.BetweenLocationTest -[INFO] Running org.biojava.bio.symbol.FundamentalAtomicSymbolEventTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.FundamentalAtomicSymbolEventTest -[INFO] Running org.biojava.bio.symbol.CodonPrefToolsTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.CodonPrefToolsTest -[INFO] Running org.biojava.bio.symbol.RangeLocationTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.RangeLocationTest -[INFO] Running org.biojava.bio.symbol.AlphabetManagerTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.AlphabetManagerTest -[INFO] Running org.biojava.bio.symbol.CrossProductAlphabetIndexTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.985 s - in org.biojava.bio.symbol.CrossProductAlphabetIndexTest -[INFO] Running org.biojava.bio.symbol.IndexedNoAmbPackTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.IndexedNoAmbPackTest -[INFO] Running org.biojava.bio.symbol.CrossProductTokenizationTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.CrossProductTokenizationTest -[INFO] Running org.biojava.bio.symbol.CircularLocationTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojava.bio.symbol.CircularLocationTest -[INFO] Running org.biojava.bio.symbol.UkkonenSuffixTreeTest -Adding symbol list taccaccagga$ -Adding symbol list taccaccagga$ -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in org.biojava.bio.symbol.UkkonenSuffixTreeTest -[INFO] Running org.biojava.bio.symbol.TranslationTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.TranslationTest -[INFO] Running org.biojava.bio.symbol.SimpleWobbleDistributionTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.SimpleWobbleDistributionTest -[INFO] Running org.biojava.bio.symbol.AlphabetSerializationTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 s - in org.biojava.bio.symbol.AlphabetSerializationTest -[INFO] Running org.biojava.bio.symbol.MergeLocationTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.MergeLocationTest -[INFO] Running org.biojava.bio.symbol.NameTokenizationTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.NameTokenizationTest -[INFO] Running org.biojava.bio.symbol.DoubleAlphabetTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.DoubleAlphabetTest -[INFO] Running org.biojava.bio.symbol.GappedSymbolListTest -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.GappedSymbolListTest -[INFO] Running org.biojava.bio.symbol.TestSoftMaskedAlphabet -[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojava.bio.symbol.TestSoftMaskedAlphabet -[INFO] Running org.biojava.bio.symbol.CompoundLocationTest -[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in org.biojava.bio.symbol.CompoundLocationTest -[INFO] Running org.biojava.bio.symbol.SimpleSymbolEventTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.SimpleSymbolEventTest -[INFO] Running org.biojava.bio.symbol.SimpleAtomicSymbolEventTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.SimpleAtomicSymbolEventTest -[INFO] Running org.biojava.bio.symbol.SimpleSymbolListTest -[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.SimpleSymbolListTest -[INFO] Running org.biojava.bio.symbol.SymbolListTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.5 s - in org.biojava.bio.symbol.SymbolListTest +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 s - in org.biojava.bio.seq.impl.SubSequenceTest +[INFO] Running org.biojava.bio.AnnotationTypeTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.AnnotationTypeTest +[INFO] Running org.biojava.utils.RepeatedCharSequenceTest +JAM +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.utils.RepeatedCharSequenceTest +[INFO] Running org.biojava.utils.SmallMapTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.utils.SmallMapTest +[INFO] Running org.biojava.utils.process.AllTests +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.075 s - in org.biojava.utils.process.AllTests +[INFO] Running org.biojava.utils.process.ExternalProcessTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.046 s - in org.biojava.utils.process.ExternalProcessTest +[INFO] Running org.biojava.utils.walker.WalkerFactoryTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 s - in org.biojava.utils.walker.WalkerFactoryTest +[INFO] Running org.biojava.utils.walker.WalkerTest +Increasing counter: Overlaps([20,50]) +Increasing counter: Overlaps([20,50]) +Increasing counter: ByClass(org.biojava.bio.seq.StrandedFeature) +Increasing counter: And(Overlaps([20,50]) , ByClass(org.biojava.bio.seq.StrandedFeature)) +Increasing counter: Overlaps([20,50]) +Increasing counter: ByClass(org.biojava.bio.seq.StrandedFeature) +Increasing counter: ByClass(org.biojava.bio.seq.ComponentFeature) +Increasing counter: Or(ByClass(org.biojava.bio.seq.StrandedFeature) , ByClass(org.biojava.bio.seq.ComponentFeature)) +Increasing counter: And(Overlaps([20,50]) , Or(ByClass(org.biojava.bio.seq.StrandedFeature) , ByClass(org.biojava.bio.seq.ComponentFeature))) +OverlapsLocation: Overlaps([20,50]) +Feature: ByClass(org.biojava.bio.seq.StrandedFeature) +OverlapsLocation: Overlaps([20,50]) +Feature: ByClass(org.biojava.bio.seq.StrandedFeature) +Feature: ByClass(org.biojava.bio.seq.ComponentFeature) +Feature: Or(ByClass(org.biojava.bio.seq.StrandedFeature) , ByClass(org.biojava.bio.seq.ComponentFeature)) +Feature: And(Overlaps([20,50]) , Or(ByClass(org.biojava.bio.seq.StrandedFeature) , ByClass(org.biojava.bio.seq.ComponentFeature))) +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 s - in org.biojava.utils.walker.WalkerTest +[INFO] Running org.biojava.utils.lsid.LifeScienceIdentifierTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.utils.lsid.LifeScienceIdentifierTest +[INFO] Running org.biojava.utils.ListToolsTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.utils.ListToolsTest +[INFO] Running org.biojava.utils.regex.PatternCheckerTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.utils.regex.PatternCheckerTest +[INFO] Running org.biojava.utils.regex.RegexTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.utils.regex.RegexTest +[INFO] Running org.biojava.utils.automata.NfaTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.utils.automata.NfaTest [INFO] [INFO] Results: [INFO] @@ -4295,11 +4296,11 @@ [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running org.biojava.bio.alignment.FlexibleAlignmentTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.181 s - in org.biojava.bio.alignment.FlexibleAlignmentTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.365 s - in org.biojava.bio.alignment.FlexibleAlignmentTest [INFO] Running org.biojava.bio.alignment.SubstitutionMatrixTest -[INFO] Tests run: 96, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.131 s - in org.biojava.bio.alignment.SubstitutionMatrixTest +[INFO] Tests run: 96, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.293 s - in org.biojava.bio.alignment.SubstitutionMatrixTest [INFO] Running org.biojava.bio.alignment.AlignmentPairTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojava.bio.alignment.AlignmentPairTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 s - in org.biojava.bio.alignment.AlignmentPairTest [INFO] [INFO] Results: [INFO] @@ -4329,7 +4330,7 @@ [INFO] ------------------------------------------------------- [INFO] Running org.biojava.bio.seq.db.biosql.BioSQLSequenceDBTest No hsqldb driver found. -[INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.032 s - in org.biojava.bio.seq.db.biosql.BioSQLSequenceDBTest +[INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 s - in org.biojava.bio.seq.db.biosql.BioSQLSequenceDBTest [INFO] [INFO] Results: [INFO] @@ -4357,42 +4358,42 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- +[INFO] Running org.biojava.bio.program.sax.BlastTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.479 s - in org.biojava.bio.program.sax.BlastTest +[INFO] Running org.biojava.bio.program.sax.blastxml.BlastXMLTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.138 s - in org.biojava.bio.program.sax.blastxml.BlastXMLTest [INFO] Running org.biojava.bio.program.ssbind.SSBindNCBIblastn2_2_3Test -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.411 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastn2_2_3Test -[INFO] Running org.biojava.bio.program.ssbind.SSBindNCBItblastn2_2_3Test -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.317 s - in org.biojava.bio.program.ssbind.SSBindNCBItblastn2_2_3Test +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.35 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastn2_2_3Test +[INFO] Running org.biojava.bio.program.ssbind.SSBindWUtblastx2_0a19Test +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.142 s - in org.biojava.bio.program.ssbind.SSBindWUtblastx2_0a19Test +[INFO] Running org.biojava.bio.program.ssbind.SSBindNCBIblastp2_0_11Test +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.46 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastp2_0_11Test [INFO] Running org.biojava.bio.program.ssbind.SSBindWUblastn2_0a19Test -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.07 s - in org.biojava.bio.program.ssbind.SSBindWUblastn2_0a19Test +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.089 s - in org.biojava.bio.program.ssbind.SSBindWUblastn2_0a19Test +[INFO] Running org.biojava.bio.program.ssbind.SSBindNCBIblastp2_2_3Test +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.459 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastp2_2_3Test +[INFO] Running org.biojava.bio.program.ssbind.SSBindNCBItblastn2_2_3Test +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.458 s - in org.biojava.bio.program.ssbind.SSBindNCBItblastn2_2_3Test +[INFO] Running org.biojava.bio.program.ssbind.SSBindNCBIblastn2_0_11Test +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.172 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastn2_0_11Test +[INFO] Running org.biojava.bio.program.ssbind.SSBindWUblastp2_0a19Test +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.06 s - in org.biojava.bio.program.ssbind.SSBindWUblastp2_0a19Test [INFO] Running org.biojava.bio.program.ssbind.SSBindFasta3_3t08Test -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.045 s - in org.biojava.bio.program.ssbind.SSBindFasta3_3t08Test +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.08 s - in org.biojava.bio.program.ssbind.SSBindFasta3_3t08Test +[INFO] Running org.biojava.bio.program.ssbind.SSBindNCBItblastn2_0_11Test +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.396 s - in org.biojava.bio.program.ssbind.SSBindNCBItblastn2_0_11Test +[INFO] Running org.biojava.bio.program.ssbind.SSBindNCBIblastx2_2_3Test +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.334 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastx2_2_3Test +[INFO] Running org.biojava.bio.program.ssbind.SSBindNCBItblastx2_0_11Test +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.119 s - in org.biojava.bio.program.ssbind.SSBindNCBItblastx2_0_11Test [INFO] Running org.biojava.bio.program.ssbind.SSBindNCBItblastx2_2_3Test -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.073 s - in org.biojava.bio.program.ssbind.SSBindNCBItblastx2_2_3Test -[INFO] Running org.biojava.bio.program.ssbind.SSBindNCBIblastp2_0_11Test -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.203 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastp2_0_11Test +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.627 s - in org.biojava.bio.program.ssbind.SSBindNCBItblastx2_2_3Test +[INFO] Running org.biojava.bio.program.ssbind.SSBindWUblastx2_0a19Test +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.072 s - in org.biojava.bio.program.ssbind.SSBindWUblastx2_0a19Test [INFO] Running org.biojava.bio.program.ssbind.SSBindNCBIblastx2_0_11Test -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.247 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastx2_0_11Test +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.347 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastx2_0_11Test [INFO] Running org.biojava.bio.program.ssbind.SSBindWUtblastn2_0a19Test -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.545 s - in org.biojava.bio.program.ssbind.SSBindWUtblastn2_0a19Test -[INFO] Running org.biojava.bio.program.ssbind.SSBindWUtblastx2_0a19Test -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.073 s - in org.biojava.bio.program.ssbind.SSBindWUtblastx2_0a19Test -[INFO] Running org.biojava.bio.program.ssbind.SSBindNCBIblastn2_0_11Test -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.17 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastn2_0_11Test -[INFO] Running org.biojava.bio.program.ssbind.SSBindNCBItblastx2_0_11Test -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.614 s - in org.biojava.bio.program.ssbind.SSBindNCBItblastx2_0_11Test -[INFO] Running org.biojava.bio.program.ssbind.SSBindWUblastx2_0a19Test -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.032 s - in org.biojava.bio.program.ssbind.SSBindWUblastx2_0a19Test -[INFO] Running org.biojava.bio.program.ssbind.SSBindNCBIblastp2_2_3Test -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.237 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastp2_2_3Test -[INFO] Running org.biojava.bio.program.ssbind.SSBindNCBIblastx2_2_3Test -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.189 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastx2_2_3Test -[INFO] Running org.biojava.bio.program.ssbind.SSBindWUblastp2_0a19Test -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.027 s - in org.biojava.bio.program.ssbind.SSBindWUblastp2_0a19Test -[INFO] Running org.biojava.bio.program.ssbind.SSBindNCBItblastn2_0_11Test -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.225 s - in org.biojava.bio.program.ssbind.SSBindNCBItblastn2_0_11Test -[INFO] Running org.biojava.bio.program.sax.BlastTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.028 s - in org.biojava.bio.program.sax.BlastTest -[INFO] Running org.biojava.bio.program.sax.blastxml.BlastXMLTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.028 s - in org.biojava.bio.program.sax.blastxml.BlastXMLTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.929 s - in org.biojava.bio.program.ssbind.SSBindWUtblastn2_0a19Test [INFO] [INFO] Results: [INFO] @@ -4420,32 +4421,32 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running org.biojava.bio.program.scf.SCFTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.193 s - in org.biojava.bio.program.scf.SCFTest -[INFO] Running org.biojava.bio.program.fastq.SolexaFastqReaderTest -[INFO] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.068 s - in org.biojava.bio.program.fastq.SolexaFastqReaderTest -[INFO] Running org.biojava.bio.program.fastq.FastqBuilderTest -[INFO] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 s - in org.biojava.bio.program.fastq.FastqBuilderTest +[INFO] Running org.biojava.bio.program.fastq.StreamingFastqParserTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.052 s - in org.biojava.bio.program.fastq.StreamingFastqParserTest +[INFO] Running org.biojava.bio.program.fastq.IlluminaFastqReaderTest +[INFO] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.146 s - in org.biojava.bio.program.fastq.IlluminaFastqReaderTest +[INFO] Running org.biojava.bio.program.fastq.SolexaFastqWriterTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.018 s - in org.biojava.bio.program.fastq.SolexaFastqWriterTest [INFO] Running org.biojava.bio.program.fastq.FastqToolsTest -[INFO] Tests run: 38, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.031 s - in org.biojava.bio.program.fastq.FastqToolsTest -[INFO] Running org.biojava.bio.program.fastq.ConvertTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 s - in org.biojava.bio.program.fastq.ConvertTest -[INFO] Running org.biojava.bio.program.fastq.FastqTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojava.bio.program.fastq.FastqTest +[INFO] Tests run: 38, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.314 s - in org.biojava.bio.program.fastq.FastqToolsTest [INFO] Running org.biojava.bio.program.fastq.SangerFastqWriterTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.biojava.bio.program.fastq.SangerFastqWriterTest -[INFO] Running org.biojava.bio.program.fastq.IlluminaFastqWriterTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojava.bio.program.fastq.IlluminaFastqWriterTest -[INFO] Running org.biojava.bio.program.fastq.StreamingFastqParserTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.program.fastq.StreamingFastqParserTest -[INFO] Running org.biojava.bio.program.fastq.SangerFastqReaderTest -[INFO] Tests run: 30, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.02 s - in org.biojava.bio.program.fastq.SangerFastqReaderTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 s - in org.biojava.bio.program.fastq.SangerFastqWriterTest [INFO] Running org.biojava.bio.program.fastq.FastqVariantTest -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.program.fastq.FastqVariantTest -[INFO] Running org.biojava.bio.program.fastq.SolexaFastqWriterTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojava.bio.program.fastq.SolexaFastqWriterTest -[INFO] Running org.biojava.bio.program.fastq.IlluminaFastqReaderTest -[INFO] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 s - in org.biojava.bio.program.fastq.IlluminaFastqReaderTest +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.biojava.bio.program.fastq.FastqVariantTest +[INFO] Running org.biojava.bio.program.fastq.SolexaFastqReaderTest +[INFO] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 s - in org.biojava.bio.program.fastq.SolexaFastqReaderTest +[INFO] Running org.biojava.bio.program.fastq.SangerFastqReaderTest +[INFO] Tests run: 30, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 s - in org.biojava.bio.program.fastq.SangerFastqReaderTest +[INFO] Running org.biojava.bio.program.fastq.FastqTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.program.fastq.FastqTest +[INFO] Running org.biojava.bio.program.fastq.IlluminaFastqWriterTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.biojava.bio.program.fastq.IlluminaFastqWriterTest +[INFO] Running org.biojava.bio.program.fastq.ConvertTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 s - in org.biojava.bio.program.fastq.ConvertTest +[INFO] Running org.biojava.bio.program.fastq.FastqBuilderTest +[INFO] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in org.biojava.bio.program.fastq.FastqBuilderTest +[INFO] Running org.biojava.bio.program.scf.SCFTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.07 s - in org.biojava.bio.program.scf.SCFTest [INFO] [INFO] Results: [INFO] @@ -4493,7 +4494,7 @@ [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running org.biojavax.bio.phylo.io.nexus.TreesBlockTest -[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.094 s - in org.biojavax.bio.phylo.io.nexus.TreesBlockTest +[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.188 s - in org.biojavax.bio.phylo.io.nexus.TreesBlockTest [INFO] [INFO] Results: [INFO] @@ -4502,20 +4503,20 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for biojava-legacy 1.9.7: [INFO] -[INFO] biojava-legacy ..................................... SUCCESS [ 0.002 s] -[INFO] bytecode ........................................... SUCCESS [ 0.412 s] -[INFO] core ............................................... SUCCESS [ 10.241 s] -[INFO] alignment .......................................... SUCCESS [ 10.082 s] -[INFO] biosql ............................................. SUCCESS [ 10.107 s] -[INFO] blast .............................................. SUCCESS [ 10.066 s] -[INFO] sequencing ......................................... SUCCESS [ 10.064 s] -[INFO] gui ................................................ SUCCESS [ 0.036 s] -[INFO] phylo .............................................. SUCCESS [ 10.064 s] +[INFO] biojava-legacy ..................................... SUCCESS [ 0.012 s] +[INFO] bytecode ........................................... SUCCESS [ 1.858 s] +[INFO] core ............................................... SUCCESS [ 21.546 s] +[INFO] alignment .......................................... SUCCESS [ 10.230 s] +[INFO] biosql ............................................. SUCCESS [ 10.350 s] +[INFO] blast .............................................. SUCCESS [ 10.152 s] +[INFO] sequencing ......................................... SUCCESS [ 10.175 s] +[INFO] gui ................................................ SUCCESS [ 0.066 s] +[INFO] phylo .............................................. SUCCESS [ 10.132 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 01:01 min -[INFO] Finished at: 2025-06-02T15:20:59Z +[INFO] Total time: 01:14 min +[INFO] Finished at: 2024-04-30T09:11:59Z [INFO] ------------------------------------------------------------------------ create-stamp debian/debhelper-build-stamp dh_prep @@ -4646,20 +4647,20 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for biojava-legacy 1.9.7: [INFO] -[INFO] biojava-legacy ..................................... SUCCESS [ 0.265 s] -[INFO] bytecode ........................................... SUCCESS [ 0.034 s] -[INFO] core ............................................... SUCCESS [ 0.022 s] -[INFO] alignment .......................................... SUCCESS [ 0.019 s] -[INFO] biosql ............................................. SUCCESS [ 0.019 s] -[INFO] blast .............................................. SUCCESS [ 0.017 s] -[INFO] sequencing ......................................... SUCCESS [ 0.018 s] -[INFO] gui ................................................ SUCCESS [ 0.020 s] -[INFO] phylo .............................................. SUCCESS [ 0.019 s] +[INFO] biojava-legacy ..................................... SUCCESS [ 0.812 s] +[INFO] bytecode ........................................... SUCCESS [ 0.144 s] +[INFO] core ............................................... SUCCESS [ 0.088 s] +[INFO] alignment .......................................... SUCCESS [ 0.051 s] +[INFO] biosql ............................................. SUCCESS [ 0.048 s] +[INFO] blast .............................................. SUCCESS [ 0.046 s] +[INFO] sequencing ......................................... SUCCESS [ 0.044 s] +[INFO] gui ................................................ SUCCESS [ 0.052 s] +[INFO] phylo .............................................. SUCCESS [ 0.059 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 0.552 s -[INFO] Finished at: 2025-06-02T15:21:00Z +[INFO] Total time: 1.690 s +[INFO] Finished at: 2024-04-30T09:12:04Z [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -plibbiojava1.9-java --javadoc --base-directory=/build/reproducible-path/biojava-live-1.9.7\+dfsg --non-explore Analysing pom.xml... @@ -4753,12 +4754,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1451145/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1451145/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/858639 and its subdirectories -I: Current time: Mon Jun 2 03:24:09 -12 2025 -I: pbuilder-time-stamp: 1748877849 +I: removing directory /srv/workspace/pbuilder/1451145 and its subdirectories +I: Current time: Tue Apr 30 23:16:39 +14 2024 +I: pbuilder-time-stamp: 1714468599