Diff of the two buildlogs: -- --- b1/build.log 2024-05-15 14:26:10.547441411 +0000 +++ b2/build.log 2024-05-15 14:30:27.156518038 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jun 17 08:45:19 -12 2025 -I: pbuilder-time-stamp: 1750193119 +I: Current time: Thu May 16 04:26:13 +14 2024 +I: pbuilder-time-stamp: 1715783173 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,51 +30,83 @@ dpkg-source: info: applying ignore_flaky_tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3431041/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/327291/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 15 14:26 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/327291/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/327291/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='813263f45edf4827a7607444755d0cce' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3431041' - PS1='# ' - PS2='> ' + INVOCATION_ID=a46de818b68b4494a87ae0a141fdc46e + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=327291 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yhiYSipm/pbuilderrc_9GDQ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yhiYSipm/b1 --logfile b1/build.log barclay_5.0.0+dfsg-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yhiYSipm/pbuilderrc_9Fy5 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yhiYSipm/b2 --logfile b2/build.log barclay_5.0.0+dfsg-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 16 03:14 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3431041/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 14 11:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/327291/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -383,7 +415,7 @@ Get: 247 http://deb.debian.org/debian trixie/main amd64 libmongodb-java all 3.6.3-2 [1901 kB] Get: 248 http://deb.debian.org/debian trixie/main amd64 liblog4j2-java all 2.19.0-2 [2310 kB] Get: 249 http://deb.debian.org/debian trixie/main amd64 libmockito-java all 2.23.0-2 [479 kB] -Fetched 259 MB in 4s (63.3 MB/s) +Fetched 259 MB in 4s (72.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) @@ -1201,8 +1233,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Jun 17 20:48:21 UTC 2025. -Universal Time is now: Tue Jun 17 20:48:21 UTC 2025. +Local time is now: Wed May 15 14:29:11 UTC 2024. +Universal Time is now: Wed May 15 14:29:11 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -1602,7 +1634,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/barclay-5.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../barclay_5.0.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/327291/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/327291/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/barclay-5.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../barclay_5.0.0+dfsg-1_source.changes dpkg-buildpackage: info: source package barclay dpkg-buildpackage: info: source version 5.0.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1671,18 +1707,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.913 secs. -The client will now receive all logging from the daemon (pid: 3480080). The daemon log file: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1/daemon-3480080.out.log +An attempt to start the daemon took 0.9 secs. +The client will now receive all logging from the daemon (pid: 354857). The daemon log file: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1/daemon-354857.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@20518a1e -Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@20518a1e -Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@5efb03be +Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@6b6ec4e1 +Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@6b6ec4e1 +Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@4d197ba6 Starting Build Compiling initialization script '/build/reproducible-path/barclay-5.0.0+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@3e065e1d +Creating new cache for metadata-1.1/results, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@6fb951fc Compiling initialization script '/build/reproducible-path/barclay-5.0.0+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/reproducible-path/barclay-5.0.0+dfsg/settings.gradle'. Settings file not found (/build/reproducible-path/barclay-5.0.0+dfsg/settings.gradle) @@ -1701,15 +1737,15 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@6a682c26 +Creating new cache for annotation-processors, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1bffc4f7 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@5efb03be -Creating new cache for taskHistory, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@27a1a3c4 -Creating new cache for outputFiles, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@3d675dba -:compileJava (Thread[Task worker for ':' Thread 3,5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@4d197ba6 +Creating new cache for taskHistory, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@737929fc +Creating new cache for outputFiles, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@361d5c44 +:compileJava (Thread[Task worker for ':' Thread 2,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.004 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@7526eede +Putting task artifact state for task ':compileJava' into context took 0.003 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@27881067 Loading the Maven rules... Replacing net.sf.jopt-simple:jopt-simple:jar:5.0.3 -> net.sf.jopt-simple:jopt-simple:jar:debian Replacing org.apache.commons:commons-lang3:jar:3.4 -> org.apache.commons:commons-lang3:jar:debian @@ -1722,7 +1758,7 @@ Replacing org.freemarker:freemarker:jar:2.3.30 -> org.freemarker:freemarker:jar:debian Replacing com.google.code.gson:gson:jar:2.2.2 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian -Up-to-date check for task ':compileJava' took 0.814 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 0.839 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. @@ -1730,32 +1766,32 @@ .map(line -> WordUtils.wrap(line, width)) ^ 1 warning -:compileJava (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 2.53 secs. -:processResources (Thread[Task worker for ':' Thread 3,5,main]) started. +:compileJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 3.182 secs. +:processResources (Thread[Task worker for ':' Thread 2,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Up-to-date check for task ':processResources' took 0.011 secs. It is not up-to-date because: +Up-to-date check for task ':processResources' took 0.008 secs. It is not up-to-date because: No history is available. -:processResources (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.038 secs. -:classes (Thread[Task worker for ':' Thread 3,5,main]) started. +:processResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.038 secs. +:classes (Thread[Task worker for ':' Thread 2,5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.001 secs. -:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) started. +:classes (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. +:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':debianMavenPom' took 0.001 secs. It is not up-to-date because: +Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/barclay-5.0.0+dfsg/build/debian/barclay.pom -:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.072 secs. -:jar (Thread[Task worker for ':' Thread 3,5,main]) started. +:debianMavenPom (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.074 secs. +:jar (Thread[Task worker for ':' Thread 2,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.008 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.006 secs. It is not up-to-date because: No history is available. -:jar (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.075 secs. +:jar (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.118 secs. -BUILD SUCCESSFUL in 7s +BUILD SUCCESSFUL in 8s 4 actionable tasks: 4 executed make[1]: Leaving directory '/build/reproducible-path/barclay-5.0.0+dfsg' jh_build -O--buildsystem=gradle @@ -1775,8 +1811,8 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.808 secs. -The client will now receive all logging from the daemon (pid: 3485981). The daemon log file: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1/daemon-3485981.out.log +An attempt to start the daemon took 0.927 secs. +The client will now receive all logging from the daemon (pid: 355742). The daemon log file: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1/daemon-355742.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. @@ -1806,10 +1842,10 @@ Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@7a3c1525 Creating new cache for taskHistory, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@7d6476ab Creating new cache for outputFiles, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@37b008f9 -:compileJava (Thread[Task worker for ':' Thread 5,5,main]) started. +:compileJava (Thread[Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.003 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@25a7ea8c +Putting task artifact state for task ':compileJava' into context took 0.004 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@2618bf9f Loading the Maven rules... Replacing net.sf.jopt-simple:jopt-simple:jar:5.0.3 -> net.sf.jopt-simple:jopt-simple:jar:debian Replacing org.apache.commons:commons-lang3:jar:3.4 -> org.apache.commons:commons-lang3:jar:debian @@ -1822,21 +1858,21 @@ Replacing org.freemarker:freemarker:jar:2.3.30 -> org.freemarker:freemarker:jar:debian Replacing com.google.code.gson:gson:jar:2.2.2 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian -Skipping task ':compileJava' as it is up-to-date (took 0.408 secs). +Skipping task ':compileJava' as it is up-to-date (took 0.402 secs). :compileJava UP-TO-DATE -:compileJava (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.435 secs. -:processResources (Thread[Task worker for ':' Thread 5,5,main]) started. +:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.433 secs. +:processResources (Thread[Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Skipping task ':processResources' as it is up-to-date (took 0.01 secs). +Skipping task ':processResources' as it is up-to-date (took 0.014 secs). :processResources UP-TO-DATE -:processResources (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.014 secs. -:classes (Thread[Task worker for ':' Thread 5,5,main]) started. +:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.02 secs. +:classes (Thread[Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE -:classes (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. -:compileTestJava (Thread[Task worker for ':' Thread 5,5,main]) started. +:classes (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. +:compileTestJava (Thread[Task worker for ':',5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. Replacing commons-io:commons-io:jar:2.11.0 -> commons-io:commons-io:jar:debian @@ -1852,63 +1888,63 @@ Passing through net.bytebuddy:byte-buddy-dep:jar:debian Passing through org.ow2.asm:asm:jar:debian Passing through org.ow2.asm:asm-commons:jar:debian -Up-to-date check for task ':compileTestJava' took 1.063 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 1.076 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. -:compileTestJava (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 2.877 secs. -:processTestResources (Thread[Task worker for ':' Thread 5,5,main]) started. +:compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 2.802 secs. +:processTestResources (Thread[Task worker for ':',5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. -Up-to-date check for task ':processTestResources' took 0.053 secs. It is not up-to-date because: +Up-to-date check for task ':processTestResources' took 0.012 secs. It is not up-to-date because: No history is available. -:processTestResources (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.101 secs. -:testClasses (Thread[Task worker for ':' Thread 5,5,main]) started. +:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.054 secs. +:testClasses (Thread[Task worker for ':',5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. -:test (Thread[Task worker for ':' Thread 5,5,main]) started. +:testClasses (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. +:test (Thread[Task worker for ':',5,main]) started. :test Putting task artifact state for task ':test' into context took 0.001 secs. Up-to-date check for task ':test' took 0.484 secs. It is not up-to-date because: Task.upToDateWhen is false. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/barclay-5.0.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath3401301396921206947txt -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/barclay-5.0.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath12061341151675060048txt -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. -Running Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@41ee7d74, [], /tmp/enabledExpansion8528419544459792976.args, [Ljava.lang.String;@264ee966, [Ljava.lang.String;@498a632f, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@67c986fa, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion15040787640647994511.args, [Ljava.lang.String;@264ee966, [Ljava.lang.String;@190d6c19, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[2](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@7d5ae70b, [], /tmp/enabledExpansion11654222985576309101.list, [Ljava.lang.String;@264ee966, [Ljava.lang.String;@26c16e06, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[3](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@3b747d48, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion17424727250986654066.list, [Ljava.lang.String;@264ee966, [Ljava.lang.String;@3e0eb0c9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[4](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@4a48385d, [], /tmp/enabledExpansion629321292270954364.args, [Ljava.lang.String;@264ee966, [Ljava.lang.String;@2de9bbde, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[5](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@160e23af, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion17148976110339057231.args, [Ljava.lang.String;@264ee966, [Ljava.lang.String;@5195b455, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[6](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@3f4bd17b, [], /tmp/enabledExpansion7709111039581623860.list, [Ljava.lang.String;@264ee966, [Ljava.lang.String;@6c0b165f, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[7](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@5a95e96c, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion15025080854556026438.list, [Ljava.lang.String;@264ee966, [Ljava.lang.String;@eaf968, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromListFileMixed[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@28b95dc5, [], [Ljava.lang.String;@58da0754, [Ljava.lang.String;@39825915, [Ljava.lang.String;@1653b3a5, [Ljava.lang.String;@74e693df)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromListFileMixed[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@16433b5f, [APPEND_TO_COLLECTIONS], [Ljava.lang.String;@58da0754, [Ljava.lang.String;@39825915, [Ljava.lang.String;@3af6e684, [Ljava.lang.String;@37d9c2cd)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@102b2236, [], /tmp/enabledExpansion4801516504414553780.args, [Ljava.lang.String;@758ce427, [Ljava.lang.String;@2e8a7ae9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6d326cd3, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion835029902766382500.args, [Ljava.lang.String;@758ce427, [Ljava.lang.String;@27dcddff, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[2](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@5b65e22c, [], /tmp/enabledExpansion5754744374046145069.list, [Ljava.lang.String;@758ce427, [Ljava.lang.String;@ab420a4, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[3](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@3fda46fb, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion8983749228329777831.list, [Ljava.lang.String;@758ce427, [Ljava.lang.String;@7e448186, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[4](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@414a83e8, [], /tmp/enabledExpansion1325228857440757020.args, [Ljava.lang.String;@758ce427, [Ljava.lang.String;@57055930, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[5](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@23e92d71, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion11167196405782861170.args, [Ljava.lang.String;@758ce427, [Ljava.lang.String;@4c9b683c, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[6](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@6d921d71, [], /tmp/enabledExpansion17043733609380531280.list, [Ljava.lang.String;@758ce427, [Ljava.lang.String;@2cbc55fe, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[7](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@14218cad, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion16611591173101978817.list, [Ljava.lang.String;@758ce427, [Ljava.lang.String;@1033db67, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromListFileMixed[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@5fb0c44c, [], [Ljava.lang.String;@36709655, [Ljava.lang.String;@1066c2f7, [Ljava.lang.String;@6593a3e3, [Ljava.lang.String;@3c5889b9)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromListFileMixed[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@65910150, [APPEND_TO_COLLECTIONS], [Ljava.lang.String;@36709655, [Ljava.lang.String;@1066c2f7, [Ljava.lang.String;@36fdd293, [Ljava.lang.String;@3c2ef7e0)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionThatCannotBeAutoInitialized(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testGetCommandLineWithExpansionFile(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[0]([Ljava.lang.String;@25302982, [APPEND_TO_COLLECTIONS], [foo, bar, baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[1]([Ljava.lang.String;@25302982, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[2]([Ljava.lang.String;@1599df1c, [APPEND_TO_COLLECTIONS], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[3]([Ljava.lang.String;@1599df1c, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[4]([Ljava.lang.String;@490606a, [APPEND_TO_COLLECTIONS], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[5]([Ljava.lang.String;@490606a, [], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[6]([Ljava.lang.String;@6941048e, [APPEND_TO_COLLECTIONS], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[7]([Ljava.lang.String;@72683b1, [[]], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[0]([Ljava.lang.String;@2832bbe6, [APPEND_TO_COLLECTIONS], [foo, bar, baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[1]([Ljava.lang.String;@2832bbe6, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[2]([Ljava.lang.String;@58d79056, [APPEND_TO_COLLECTIONS], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[3]([Ljava.lang.String;@58d79056, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[4]([Ljava.lang.String;@703ce2d3, [APPEND_TO_COLLECTIONS], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[5]([Ljava.lang.String;@703ce2d3, [], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[6]([Ljava.lang.String;@f1d5dde, [APPEND_TO_COLLECTIONS], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[7]([Ljava.lang.String;@18506d10, [[]], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testPositionalCollectionFromExpansionFile(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testRejectNonCollectionFileExpansionSuppression(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testUninitializedCollections[0]([Ljava.lang.String;@6e9fe6d2, [], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testUninitializedCollections[1]([Ljava.lang.String;@6e9fe6d2, [APPEND_TO_COLLECTIONS], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method passingMutexCheck[0](simple mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@771bcdd6, [Ljava.lang.String;@319eb5b1)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method passingMutexCheck[1](collection mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@21cad527, [Ljava.lang.String;@4e4f4e2c)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method passingMutexCheck[2](collection multiple mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@8a577e6, [Ljava.lang.String;@73c54063)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method passingMutexCheck[3](scalar mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@7dfc3bf3, [Ljava.lang.String;@66e47d4f)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testUninitializedCollections[0]([Ljava.lang.String;@44a82a15, [], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testUninitializedCollections[1]([Ljava.lang.String;@44a82a15, [APPEND_TO_COLLECTIONS], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method passingMutexCheck[0](simple mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@39118bc7, [Ljava.lang.String;@4b9fd9cd)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method passingMutexCheck[1](collection mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@644a6a0b, [Ljava.lang.String;@5ab3e89d)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method passingMutexCheck[2](collection multiple mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@bfa2248, [Ljava.lang.String;@1da1aed2)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method passingMutexCheck[3](scalar mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@3b9265c8, [Ljava.lang.String;@f78ac95)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testAbbreviationsAreRejected(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testAdvancedArguments(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgCollectionNotInitialized(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testArgUsage[0](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@562136e, [--FROBNICATION_FLAVOR , --SHMIGGLE_TYPE , --arguments_file , --FROBNICATION_THRESHOLD,-T , --TRUTHINESS ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testArgUsage[1](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@1641f6f, [--deprecatedString, This argument is DEPRECATED, and will be removed in a future])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testArgUsage[2](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@6fd26b3, [--collection , --scalar ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testArgUsage[0](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@24b7023, [--FROBNICATION_FLAVOR , --SHMIGGLE_TYPE , --arguments_file , --FROBNICATION_THRESHOLD,-T , --TRUTHINESS ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testArgUsage[1](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@7c78ad1a, [--deprecatedString, This argument is DEPRECATED, and will be removed in a future])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testArgUsage[2](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@1f678902, [--collection , --scalar ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentCollection(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentNameCollision(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentUseClash(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -1927,11 +1963,11 @@ Running Test: Test method testEnumSet(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testEnumSetNegative(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testExperimentalFeatureUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[0](no args, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@64acf662, [Ljava.lang.String;@4f7b5be2)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[1](1 of group required, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@323ff5ee, [Ljava.lang.String;@6646cfa2)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[2](mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@7bd98f0e, [Ljava.lang.String;@2d8b8d9)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[3](mega mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@4e180d6e, [Ljava.lang.String;@6fd9fcbb)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[4](collection and scalar mutex mix, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@6cae195d, [Ljava.lang.String;@184cc20b)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[0](no args, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@4b09fb57, [Ljava.lang.String;@7fd50d21)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[1](1 of group required, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@328f280f, [Ljava.lang.String;@32ea1320)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[2](mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@7292cdb6, [Ljava.lang.String;@a2d4b90)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[3](mega mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@f53abb5, [Ljava.lang.String;@4e3237d2)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[4](collection and scalar mutex mix, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@294751f9, [Ljava.lang.String;@1922d8ef)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagNoArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagWithPositionalFollowing(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagsWithArguments(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -2044,13 +2080,13 @@ Running Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOnlyPrintNameOnce(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOptionalOnlyUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[0]([Ljava.lang.String;@651a3c45)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[1]([Ljava.lang.String;@5bd098c2)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[2]([Ljava.lang.String;@7e632cb2)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[3]([Ljava.lang.String;@e0e43c6)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[4]([Ljava.lang.String;@7e213c6f)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[5]([Ljava.lang.String;@76488799)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[6]([Ljava.lang.String;@6b673944)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[0]([Ljava.lang.String;@72d33a32)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[1]([Ljava.lang.String;@41db49dc)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[2]([Ljava.lang.String;@3257d983)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[3]([Ljava.lang.String;@1128a7b9)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[4]([Ljava.lang.String;@24e62b38)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[5]([Ljava.lang.String;@24e47eec)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[6]([Ljava.lang.String;@2e74ae16)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPositionalDeprecated(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPositive(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPrivateArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -2058,9 +2094,9 @@ Running Test: Test method testRequiredOnlyUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredOptionalWithDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredOptionalWithoutDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testSetNonNullableArgumentsToNull[0]([Ljava.lang.String;@7ccb8ac3)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testSetNonNullableArgumentsToNull[1]([Ljava.lang.String;@2f0bf521)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testSetNonNullableArgumentsToNull[2]([Ljava.lang.String;@62f89cb)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testSetNonNullableArgumentsToNull[0]([Ljava.lang.String;@27f72b84)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testSetNonNullableArgumentsToNull[1]([Ljava.lang.String;@642c3ac5)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testSetNonNullableArgumentsToNull[2]([Ljava.lang.String;@6df26929)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testVersionSpecialFlag(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -2071,19 +2107,19 @@ Version:null Running Test: Test method testWithBoundariesArgumentsForNoNumeric(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithDoubleBoundariesArgumentsForInteger(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[0]([Ljava.lang.String;@7d83dc80, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[1]([Ljava.lang.String;@7d33027d, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[2]([Ljava.lang.String;@45a18b00, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[3]([Ljava.lang.String;@7ee24747, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[4]([Ljava.lang.String;@15957338, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[5]([Ljava.lang.String;@48f8bbc0, 1, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[6]([Ljava.lang.String;@5fb9b644, null, 2.0, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[7]([Ljava.lang.String;@49c05880, null, null, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[8]([Ljava.lang.String;@11b9ba55, 1, 2.0, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[0]([Ljava.lang.String;@7a8d4b29, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[1]([Ljava.lang.String;@2d048343, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[2]([Ljava.lang.String;@7e743b19, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[3]([Ljava.lang.String;@1db2a908, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[4]([Ljava.lang.String;@672a6021, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[5]([Ljava.lang.String;@4d1df91f, 1, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[6]([Ljava.lang.String;@e9b6063, null, 2.0, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[7]([Ljava.lang.String;@121c147b, null, null, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[8]([Ljava.lang.String;@53d7a240, 1, 2.0, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithoutPositionalWithDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithoutPositionalWithoutDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testBasicPlugin[0]([Ljava.lang.String;@6ded58a0, 0)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) -Running Test: Test method testBasicPlugin[1]([Ljava.lang.String;@9380700, 1)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) +Running Test: Test method testBasicPlugin[0]([Ljava.lang.String;@24beb9f9, 0)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) +Running Test: Test method testBasicPlugin[1]([Ljava.lang.String;@cd5237, 1)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDanglingFilterArguments[0](TestPluginWithRequiredArg, requiredStringArgForPlugin, fakeArgValue)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDanglingFilterArguments[1](TestPluginWithOptionalArg, optionalStringArgForPlugin, fakeArgValue)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDefaultIncludePluginClass[0](class org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest$TestPluginBase, true)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) @@ -2563,401 +2599,401 @@ Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[0](pass, [Ljava.lang.String;@7218703d, true)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Running Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. +Running Test: Test method testMutex[0](pass, [Ljava.lang.String;@1f34d968, true)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Running Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[1](no args, [Ljava.lang.String;@76d496e8, false) STANDARD_ERROR ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@14a4adc5, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@76d496e8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. +Running Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false) STANDARD_ERROR ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@3e1f9cf3, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@727e4d9c, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y +Running Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[3](mutex, [Ljava.lang.String;@31daa293, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false) STANDARD_ERROR ERROR: Option 'A' cannot be used in conjunction with option(s) Y -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@31daa293, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@4df51bbc, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N +Running Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false) STANDARD_ERROR ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@335ba389, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@155badbf, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testNonASCIIAccept(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) @@ -4112,138 +4148,142 @@ Running Test: Test method testUsageWithDefault(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsageWithoutPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsageWithoutPositionalWithDefault(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Running Test: Test method testDefaultValueAsString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@7a5770, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@65c4bcd9, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@175743d1, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@28279194, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@628e1884, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@3063dc18, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@39d1d7b1, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@5177efa0, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@401aaf, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@42a8cd39, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@2cb57e38, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@651ec593, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@78db6a9c, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@606ff903, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@3bf2d4a6, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@52240bed, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@117be44a, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@4c64f43e, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@34408a0e, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@e897466, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@7f7a2caa, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@62a5d81f, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@552a683c, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@6bad6d00, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@4edc6912, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@48fd77b8, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@212c2dfd, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@ccf0326, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@6a73e9ac, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@563bb669, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@aff080d, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@69346c03, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@41115abd, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@51546655, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@4d4d10c8, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@76704cb0, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetCommandLineDisplayString[0]([Ljava.lang.String;@651b2ca1, )(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) -Running Test: Test method testGetCommandLineDisplayString[1]([Ljava.lang.String;@407a7404, arg1)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) -Running Test: Test method testGetCommandLineDisplayString[2]([Ljava.lang.String;@3acf016e, arg1 arg2)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@71a98107, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@1ab22b18, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@657483bf, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@6e694302, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@3335ca34, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@303dd800, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@3170a335, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@3cae3a56, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@695ce25f, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@2ef4edf4, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@71baef42, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@339cd8da, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@371a68e3, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@1859c6e1, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@647c8f64, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@30a6f4a9, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@1dded178, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@e12d051, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@33f33dc1, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@1124d9ab, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@8f85579, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@56e730d4, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@45262d96, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@11ccaf1, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@5f9623e, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@1d8bdb8f, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@1ffe6477, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@18e2492f, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@65bd314d, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@1372db5, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@6566c572, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@631a53b6, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@346f7a1f, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@1a010587, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@399a7c9f, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@3b2728d5, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetCommandLineDisplayString[0]([Ljava.lang.String;@1d99c401, )(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) +Running Test: Test method testGetCommandLineDisplayString[1]([Ljava.lang.String;@526cd8d5, arg1)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) +Running Test: Test method testGetCommandLineDisplayString[2]([Ljava.lang.String;@4f05e48c, arg1 arg2)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testMaxElements(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testMinElements(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testMinElementsGreaterThanMaxElements(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testNonCollection(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method recognizedValues(org.broadinstitute.barclay.argparser.StrictBooleanConverterTest) Running Test: Test method unrecognizedValues(org.broadinstitute.barclay.argparser.StrictBooleanConverterTest) -Running Test: Test method testBadTaggedArguments[0]([Ljava.lang.String;@6883795a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[1]([Ljava.lang.String;@7f0c680c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[2]([Ljava.lang.String;@1fc8ec0a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[3]([Ljava.lang.String;@7a486e42)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[4]([Ljava.lang.String;@442e2ca7)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[5]([Ljava.lang.String;@3b2cb4af)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[6]([Ljava.lang.String;@633d1fd0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[7]([Ljava.lang.String;@40be3c8f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[8]([Ljava.lang.String;@72cede2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[9]([Ljava.lang.String;@4a66622b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[10]([Ljava.lang.String;@43e31d93)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[11]([Ljava.lang.String;@3e07a4ce)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[12]([Ljava.lang.String;@19093790)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[13]([Ljava.lang.String;@4a514ad3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[14]([Ljava.lang.String;@35e8730f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[15]([Ljava.lang.String;@213ff6e5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[16]([Ljava.lang.String;@27a6eb83)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[17]([Ljava.lang.String;@621201ba)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[18]([Ljava.lang.String;@ee0f1dd)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[19]([Ljava.lang.String;@f47baa2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[20]([Ljava.lang.String;@4fb88ea2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[21]([Ljava.lang.String;@5347d916)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[22]([Ljava.lang.String;@616a56a3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[23]([Ljava.lang.String;@5258c859)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[24]([Ljava.lang.String;@6bd46a6a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[25]([Ljava.lang.String;@11c0b810)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[26]([Ljava.lang.String;@462cda44)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[27]([Ljava.lang.String;@2291172b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[28]([Ljava.lang.String;@170f6253)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[29]([Ljava.lang.String;@22597c2f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[30]([Ljava.lang.String;@724585c4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[31]([Ljava.lang.String;@7690550a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[32]([Ljava.lang.String;@6c3977d3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[33]([Ljava.lang.String;@75e664fb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[34]([Ljava.lang.String;@208aeb0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[35]([Ljava.lang.String;@528cdcbb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[36]([Ljava.lang.String;@6df13c2a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[37]([Ljava.lang.String;@12cdf73a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[38]([Ljava.lang.String;@2e538998)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[39]([Ljava.lang.String;@7f7d14eb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[40]([Ljava.lang.String;@5d2b1e6e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[41]([Ljava.lang.String;@3bb81531)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[42]([Ljava.lang.String;@3b02fdf5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[43]([Ljava.lang.String;@a2f3422)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[44]([Ljava.lang.String;@607290e0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[45]([Ljava.lang.String;@15cc1618)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[46]([Ljava.lang.String;@63034d7b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[47]([Ljava.lang.String;@33630255)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[48]([Ljava.lang.String;@51000689)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[49]([Ljava.lang.String;@17d4f16c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[50]([Ljava.lang.String;@6afd86b6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[51]([Ljava.lang.String;@207f2d60)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[52]([Ljava.lang.String;@6c80b0e6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[53]([Ljava.lang.String;@22461ecc)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[54]([Ljava.lang.String;@71899803)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[55]([Ljava.lang.String;@7ed901a6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[56]([Ljava.lang.String;@7a7bf853)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[57]([Ljava.lang.String;@42880482)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[58]([Ljava.lang.String;@4aab7dcf)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[59]([Ljava.lang.String;@6b30f808)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGetCommandLineTagged[0]([Ljava.lang.String;@284924e4, TaggableArguments --tFullName:tumor gcs://my/tumor.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGetCommandLineTagged[1]([Ljava.lang.String;@784e09f7, TaggableArguments --tFullName:tumor,training=true,truth=false tumor.bam --tFullName:normal,training=false,truth=true normal.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[0]([Ljava.lang.String;@1e57e243, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@64bfbc58, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@a25eede)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[1]([Ljava.lang.String;@1d08cab8, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7cbbeb9c, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2ef7542c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[2]([Ljava.lang.String;@306aece9, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@53c2a5cc, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@48bc34a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[3]([Ljava.lang.String;@3e31fe04, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@6c4d56b9, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@62292ce3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[4]([Ljava.lang.String;@3e3d6f29, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@ae6e7, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@110471f7)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[5]([Ljava.lang.String;@30e3ea4d, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@19b7a884, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7d57d607)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[6]([Ljava.lang.String;@1ca5cc27, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3cd980b5, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@215b012d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[7]([Ljava.lang.String;@41826177, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7cdc79d3, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@721b47ef)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[8]([Ljava.lang.String;@a5a630, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5679326a, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@22667ae9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[9]([Ljava.lang.String;@5554105, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@77ea887, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@4c875985)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[10]([Ljava.lang.String;@2b46edb6, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@61964380, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@11f1df75)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[11]([Ljava.lang.String;@1dc86a8f, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3a0c983, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@76628b2a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[12]([Ljava.lang.String;@4a65dcf7, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2d31b4a6, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@175dbd70)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[13]([Ljava.lang.String;@16087d8e, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@30c6a382, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@76ffa65a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[14]([Ljava.lang.String;@ab4056, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2f9a64af, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@606bb0a8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[15]([Ljava.lang.String;@339a273f, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@50f66a28, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@ade8ec9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[16]([Ljava.lang.String;@c35bea, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@8460d59, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@36398177)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[17]([Ljava.lang.String;@54eee638, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@28916e44, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7b5d952a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[0]([Ljava.lang.String;@55a26c6b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[1]([Ljava.lang.String;@4060a3cb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[2]([Ljava.lang.String;@2eae4785)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[3]([Ljava.lang.String;@731c129a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[4]([Ljava.lang.String;@3a1341d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[5]([Ljava.lang.String;@55510f4f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[6]([Ljava.lang.String;@7e843bbd)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[7]([Ljava.lang.String;@37c2fce0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[8]([Ljava.lang.String;@6387bf0b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[9]([Ljava.lang.String;@39b6f7db)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[10]([Ljava.lang.String;@69f8b092)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[11]([Ljava.lang.String;@3b7531d7)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[12]([Ljava.lang.String;@4148261)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[13]([Ljava.lang.String;@5428c53)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[14]([Ljava.lang.String;@2b7199b2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[15]([Ljava.lang.String;@72c45421)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[16]([Ljava.lang.String;@76f39d8e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[17]([Ljava.lang.String;@c760fe0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[18]([Ljava.lang.String;@75d7403a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[19]([Ljava.lang.String;@1dc744bf)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[20]([Ljava.lang.String;@58fbf525)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[21]([Ljava.lang.String;@4c4c4a10)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[22]([Ljava.lang.String;@497285ff)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[23]([Ljava.lang.String;@44211c22)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[24]([Ljava.lang.String;@6fee10b1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[25]([Ljava.lang.String;@57b8fba9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[26]([Ljava.lang.String;@bd21b4b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[27]([Ljava.lang.String;@210e75c9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[28]([Ljava.lang.String;@194f9197)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[29]([Ljava.lang.String;@270500cd)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[30]([Ljava.lang.String;@264d8640)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[31]([Ljava.lang.String;@4f5179fd)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[32]([Ljava.lang.String;@59b9a06b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[33]([Ljava.lang.String;@2baf8ecb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[34]([Ljava.lang.String;@28365e1d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[35]([Ljava.lang.String;@5afc84ab)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[36]([Ljava.lang.String;@45090877)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[37]([Ljava.lang.String;@5c0f577c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[38]([Ljava.lang.String;@e0b17f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[39]([Ljava.lang.String;@308ce581)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[40]([Ljava.lang.String;@9b9e0a1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[41]([Ljava.lang.String;@77de3d8d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[42]([Ljava.lang.String;@62e75582)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[43]([Ljava.lang.String;@c7d14d5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[44]([Ljava.lang.String;@4b80872d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[45]([Ljava.lang.String;@5bf62435)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[46]([Ljava.lang.String;@5631fd53)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[47]([Ljava.lang.String;@77450b7f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[48]([Ljava.lang.String;@18027114)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[49]([Ljava.lang.String;@3b2a6c25)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[50]([Ljava.lang.String;@6b4fd657)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[51]([Ljava.lang.String;@254dedd)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[52]([Ljava.lang.String;@7efa7751)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[53]([Ljava.lang.String;@e38a59c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[54]([Ljava.lang.String;@437c6ff)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[55]([Ljava.lang.String;@f4aac80)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[56]([Ljava.lang.String;@3eae4721)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[57]([Ljava.lang.String;@46f07142)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[58]([Ljava.lang.String;@3b77016c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[59]([Ljava.lang.String;@45709e46)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGetCommandLineTagged[0]([Ljava.lang.String;@578dfdf3, TaggableArguments --tFullName:tumor gcs://my/tumor.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGetCommandLineTagged[1]([Ljava.lang.String;@211e310a, TaggableArguments --tFullName:tumor,training=true,truth=false tumor.bam --tFullName:normal,training=false,truth=true normal.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[0]([Ljava.lang.String;@11c851d6, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3d52e77, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@bfb3645)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[1]([Ljava.lang.String;@4e2246dd, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@23957c4e, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@58e254f3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[2]([Ljava.lang.String;@4d8ec50c, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@4d33a867, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@51858119)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[3]([Ljava.lang.String;@6405f5fb, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@13c89f5d, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@386ba0f6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[4]([Ljava.lang.String;@72de889d, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7fa72062, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2f2ba130)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[5]([Ljava.lang.String;@7ff45e27, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7bad3879, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@663ed48)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[6]([Ljava.lang.String;@7cdbfff7, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@31a72c54, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@548a380c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[7]([Ljava.lang.String;@5c97d663, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7ee5779, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7732954f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[8]([Ljava.lang.String;@14806a0c, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5ff07d32, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3e0d7548)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[9]([Ljava.lang.String;@6f84dea8, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5225424b, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@740d6306)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[10]([Ljava.lang.String;@8a02e25, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5b7261fa, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@9f4ab7f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[11]([Ljava.lang.String;@4e59bedc, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@ca8309f, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@42502e6d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[12]([Ljava.lang.String;@385f127d, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7c702d3d, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@438b276d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[13]([Ljava.lang.String;@176633c7, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@22b52a76, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@50f1d4df)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[14]([Ljava.lang.String;@1b49da6, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@77e74f5d, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@52b6b423)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[15]([Ljava.lang.String;@4af3d571, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@538599cb, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5a488359)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[16]([Ljava.lang.String;@2e638a69, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@329d43e1, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@4635fa7c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[17]([Ljava.lang.String;@662c16db, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2f280f38, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@40ab95e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testMixedTagCollectionArgument(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testMixedTaggedExpansionFile(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testTaggedScalarArgument(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testNonNullDoesNotThrow(org.broadinstitute.barclay.utils.UtilsUnitTest) +WARNING: A terminally deprecated method in java.lang.System has been called +Gradle Test Executor 1 finished executing tests. Running Test: Test method testNonNullThrows(org.broadinstitute.barclay.utils.UtilsUnitTest) +WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) Running Test: Test method testNonNullWithMessageReturn(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testNonNullWithMessageThrows(org.broadinstitute.barclay.utils.UtilsUnitTest) +WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker Running Test: Test method testWrapParagraph[0](hello hello hello hello hello, hello hello hello @@ -4252,6 +4292,7 @@ hello hello hello hello, hello hello hello hello hello, 11)(org.broadinstitute.barclay.utils.UtilsUnitTest) +WARNING: System::setSecurityManager will be removed in a future release Running Test: Test method testWrapParagraph[2](hello hello hello hello hello, hello hello @@ -4324,20 +4365,15 @@ e f g, -1000)(org.broadinstitute.barclay.utils.UtilsUnitTest) -Gradle Test Executor 1 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release Results: SUCCESS (337 tests, 337 successes, 0 failures, 0 skipped) -Finished generating test XML results (0.053 secs) into: /build/reproducible-path/barclay-5.0.0+dfsg/build/test-results/test +Finished generating test XML results (0.057 secs) into: /build/reproducible-path/barclay-5.0.0+dfsg/build/test-results/test Generating HTML test report... -Finished generating test html results (0.037 secs) into: /build/reproducible-path/barclay-5.0.0+dfsg/build/reports/tests/test -:test (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 3.043 secs. +Finished generating test html results (0.045 secs) into: /build/reproducible-path/barclay-5.0.0+dfsg/build/reports/tests/test +:test (Thread[Task worker for ':',5,main]) completed. Took 3.741 secs. -BUILD SUCCESSFUL in 10s +BUILD SUCCESSFUL in 11s 5 actionable tasks: 3 executed, 2 up-to-date - rm -fr -- /tmp/dh-xdg-rundir-4HGbNi3c + rm -fr -- /tmp/dh-xdg-rundir-LJcVPcEd make[1]: Leaving directory '/build/reproducible-path/barclay-5.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -4368,8 +4404,8 @@ Updating manifest in /build/reproducible-path/barclay-5.0.0+dfsg/debian/libbarclay-java/usr/share/java/barclay-5.0.0.jar jh_manifest -O--buildsystem=gradle find debian/libbarclay-java -name '*.jar' - Found symlink usr/share/java/barclay.jar Found usr/share/java/barclay-5.0.0.jar + Found symlink usr/share/java/barclay.jar Reading manifest from debian/libbarclay-java/usr/share/java/barclay-5.0.0.jar No update of debian/libbarclay-java/usr/share/java/barclay-5.0.0.jar required. jh_exec -O--buildsystem=gradle @@ -4456,12 +4492,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/327291/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/327291/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3431041 and its subdirectories -I: Current time: Tue Jun 17 08:49:09 -12 2025 -I: pbuilder-time-stamp: 1750193349 +I: removing directory /srv/workspace/pbuilder/327291 and its subdirectories +I: Current time: Thu May 16 04:30:26 +14 2024 +I: pbuilder-time-stamp: 1715783426