Diff of the two buildlogs: -- --- b1/build.log 2024-10-27 11:44:57.810535679 +0000 +++ b2/build.log 2024-10-27 11:58:49.117024845 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Nov 29 05:58:39 -12 2025 -I: pbuilder-time-stamp: 1764439119 +I: Current time: Mon Oct 28 01:45:00 +14 2024 +I: pbuilder-time-stamp: 1730029500 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying overriding_testReferenceBasesByRegion.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3581950/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1961006/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 27 11:45 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1961006/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1961006/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='a10312054e274532b720d7c5c12ca9ea' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3581950' - PS1='# ' - PS2='> ' + INVOCATION_ID=0891d3a2675b47008652de530d012b71 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1961006 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iMHpPY7p/pbuilderrc_D9dH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iMHpPY7p/b1 --logfile b1/build.log artemis_18.2.0+dfsg-4.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iMHpPY7p/pbuilderrc_FLF5 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iMHpPY7p/b2 --logfile b2/build.log artemis_18.2.0+dfsg-4.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3581950/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1961006/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -623,7 +655,7 @@ Get: 452 http://deb.debian.org/debian trixie/main amd64 maven all 3.8.8-1 [19.3 kB] Get: 453 http://deb.debian.org/debian trixie/main amd64 maven-repo-helper all 1.11 [142 kB] Get: 454 http://deb.debian.org/debian trixie/main amd64 maven-debian-helper all 2.6.4 [108 kB] -Fetched 405 MB in 33s (12.1 MB/s) +Fetched 405 MB in 27s (15.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19947 files and directories currently installed.) @@ -2109,8 +2141,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Nov 29 18:00:23 UTC 2025. -Universal Time is now: Sat Nov 29 18:00:23 UTC 2025. +Local time is now: Sun Oct 27 11:49:23 UTC 2024. +Universal Time is now: Sun Oct 27 11:49:23 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2) ... @@ -2710,7 +2742,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/artemis-18.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../artemis_18.2.0+dfsg-4_source.changes +I: user script /srv/workspace/pbuilder/1961006/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1961006/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/artemis-18.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../artemis_18.2.0+dfsg-4_source.changes dpkg-buildpackage: info: source package artemis dpkg-buildpackage: info: source version 18.2.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable @@ -2809,8 +2845,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 16.918 s -[INFO] Finished at: 2025-11-29T06:01:40-12:00 +[INFO] Total time: 31.194 s +[INFO] Finished at: 2024-10-28T01:51:38+14:00 [INFO] ------------------------------------------------------------------------ # Now, 4 jars are meant to be created: they are similar to each other but # do not exactly have the same contents. We design this with the pom.xml file, @@ -2880,58 +2916,36 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.sanger.artemis.circular.digest.UtilsTest -[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.033 s - in uk.ac.sanger.artemis.circular.digest.UtilsTest -[INFO] Running uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.228 s - in uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest -[INFO] Running uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.217 s - in uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest -[INFO] Running uk.ac.sanger.artemis.util.IconManagerTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.05 s - in uk.ac.sanger.artemis.util.IconManagerTest -[INFO] Running uk.ac.sanger.artemis.FeatureSegmentTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.674 s - in uk.ac.sanger.artemis.FeatureSegmentTest -[INFO] Running uk.ac.sanger.artemis.sequence.StrandTest -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.672 s - in uk.ac.sanger.artemis.sequence.StrandTest -[INFO] Running uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest -[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.648 s - in uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest -[INFO] Running uk.ac.sanger.artemis.sequence.BasesTest -[INFO] Tests run: 28, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.856 s - in uk.ac.sanger.artemis.sequence.BasesTest [INFO] Running uk.ac.sanger.artemis.io.SimpleDocumentEntryTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.969 s - in uk.ac.sanger.artemis.io.SimpleDocumentEntryTest -[INFO] Running uk.ac.sanger.artemis.io.ValidateFeatureTest -[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.632 s - in uk.ac.sanger.artemis.io.ValidateFeatureTest -[INFO] Running uk.ac.sanger.artemis.io.LocationTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.055 s - in uk.ac.sanger.artemis.io.LocationTest -[INFO] Running uk.ac.sanger.artemis.io.BlastStreamFeatureTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.067 s - in uk.ac.sanger.artemis.io.BlastStreamFeatureTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.243 s - in uk.ac.sanger.artemis.io.SimpleDocumentEntryTest [INFO] Running uk.ac.sanger.artemis.io.LineGroupCacheTest -[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.225 s - in uk.ac.sanger.artemis.io.LineGroupCacheTest -[INFO] Running uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.224 s - in uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest +[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.116 s - in uk.ac.sanger.artemis.io.LineGroupCacheTest +[INFO] Running uk.ac.sanger.artemis.io.BlastStreamFeatureTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.122 s - in uk.ac.sanger.artemis.io.BlastStreamFeatureTest +[INFO] Running uk.ac.sanger.artemis.io.LocationTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.095 s - in uk.ac.sanger.artemis.io.LocationTest [INFO] Running uk.ac.sanger.artemis.io.GffToEMBLTest Written... /build/reproducible-path/artemis-18.2.0+dfsg/target/test-classes/data/gff/Pf3D7_01_02_v3.gff.gz.embl.gz Written... /build/reproducible-path/artemis-18.2.0+dfsg/target/test-classes/data/gff/test.gff.gz.embl.gz Written... /build/reproducible-path/artemis-18.2.0+dfsg/target/test-classes/data/gff/test_boundary.gff.gz.embl.gz -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.387 s - in uk.ac.sanger.artemis.io.GffToEMBLTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.706 s - in uk.ac.sanger.artemis.io.GffToEMBLTest +[INFO] Running uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.058 s - in uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest [INFO] Running uk.ac.sanger.artemis.io.GFF3AttributeBuilderTest -[INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.081 s - in uk.ac.sanger.artemis.io.GFF3AttributeBuilderTest +[INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.131 s - in uk.ac.sanger.artemis.io.GFF3AttributeBuilderTest [INFO] Running uk.ac.sanger.artemis.io.GFF3EncoderTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.2 s - in uk.ac.sanger.artemis.io.GFF3EncoderTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.108 s - in uk.ac.sanger.artemis.io.GFF3EncoderTest +[INFO] Running uk.ac.sanger.artemis.io.ValidateFeatureTest +[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.995 s - in uk.ac.sanger.artemis.io.ValidateFeatureTest [INFO] Running uk.ac.sanger.artemis.io.GFFTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.028 s - in uk.ac.sanger.artemis.io.GFFTest -[INFO] Running uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest -[INFO] Tests run: 29, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.228 s - in uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest -[INFO] Running uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest -[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 0.048 s - in uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest -[INFO] Running uk.ac.sanger.artemis.components.EditMenuTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.092 s - in uk.ac.sanger.artemis.components.EditMenuTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.755 s - in uk.ac.sanger.artemis.io.GFFTest +[INFO] Running uk.ac.sanger.artemis.components.TransferAnnotationToolTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.144 s - in uk.ac.sanger.artemis.components.TransferAnnotationToolTest [INFO] Running uk.ac.sanger.artemis.components.RunInterProSearchTest -06:05:21.933 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: Failed to send InterPro query: Oops something went wrong -06:05:22.024 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: Failed to send InterPro query due to an unknown host error: Oops something went wrong -06:05:22.073 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: HTTP error received from EBI InterPro website: 403 -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.537 s - in uk.ac.sanger.artemis.components.RunInterProSearchTest -[INFO] Running uk.ac.sanger.artemis.components.alignment.MappedReadsTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.253 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsTest +01:53:41.777 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: Failed to send InterPro query: Oops something went wrong +01:53:41.816 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: Failed to send InterPro query due to an unknown host error: Oops something went wrong +01:53:41.835 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: HTTP error received from EBI InterPro website: 403 +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.935 s - in uk.ac.sanger.artemis.components.RunInterProSearchTest [INFO] Running uk.ac.sanger.artemis.components.alignment.BamUtilsTest testGetExistingIndexFileForFtpCram(): This test creates index files and may be slow to complete testGetExistingIndexFileForFtpCram() : WARNING: Unable to run this test as cannot connect to Sanger FTP server @@ -2939,23 +2953,45 @@ testGetIndexFileForFtpBam() : WARNING: Unable to run this test as cannot connect to Sanger FTP server testGetIndexFileForFtpBam() : WARNING: Unable to run this test as cannot connect to Sanger FTP server testCreateIndexFileForFtpCram() : WARNING: Unable to run this test as cannot connect to Sanger FTP server -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.042 s - in uk.ac.sanger.artemis.components.alignment.BamUtilsTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.933 s - in uk.ac.sanger.artemis.components.alignment.BamUtilsTest +[INFO] Running uk.ac.sanger.artemis.components.alignment.MappedReadsTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.093 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsTest [INFO] Running uk.ac.sanger.artemis.components.alignment.MappedReadsWithMultipleFilesTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.227 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsWithMultipleFilesTest -[INFO] Running uk.ac.sanger.artemis.components.ProjectPropertyTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.431 s - in uk.ac.sanger.artemis.components.ProjectPropertyTest -[INFO] Running uk.ac.sanger.artemis.components.TransferAnnotationToolTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.746 s - in uk.ac.sanger.artemis.components.TransferAnnotationToolTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.087 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsWithMultipleFilesTest +[INFO] Running uk.ac.sanger.artemis.components.EditMenuTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.097 s - in uk.ac.sanger.artemis.components.EditMenuTest [INFO] Running uk.ac.sanger.artemis.components.DbfetchEntrySourceTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.047 s - in uk.ac.sanger.artemis.components.DbfetchEntrySourceTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.065 s - in uk.ac.sanger.artemis.components.DbfetchEntrySourceTest +[INFO] Running uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest +[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 0.076 s - in uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest +[INFO] Running uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest +[INFO] Tests run: 29, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.368 s - in uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest +[INFO] Running uk.ac.sanger.artemis.components.ProjectPropertyTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.727 s - in uk.ac.sanger.artemis.components.ProjectPropertyTest [INFO] Running uk.ac.sanger.artemis.editor.EvidenceViewerTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.043 s - in uk.ac.sanger.artemis.editor.EvidenceViewerTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.057 s - in uk.ac.sanger.artemis.editor.EvidenceViewerTest [INFO] Running uk.ac.sanger.artemis.FeatureTest -[INFO] Tests run: 75, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 14.776 s - in uk.ac.sanger.artemis.FeatureTest -[INFO] Running uk.ac.sanger.artemis.plot.UserPlotTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.231 s - in uk.ac.sanger.artemis.plot.UserPlotTest +[INFO] Tests run: 75, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 27.028 s - in uk.ac.sanger.artemis.FeatureTest [INFO] Running uk.ac.sanger.artemis.ComparisonDataFactoryTest -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.871 s - in uk.ac.sanger.artemis.ComparisonDataFactoryTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.491 s - in uk.ac.sanger.artemis.ComparisonDataFactoryTest +[INFO] Running uk.ac.sanger.artemis.util.IconManagerTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.088 s - in uk.ac.sanger.artemis.util.IconManagerTest +[INFO] Running uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.061 s - in uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest +[INFO] Running uk.ac.sanger.artemis.circular.digest.UtilsTest +[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.062 s - in uk.ac.sanger.artemis.circular.digest.UtilsTest +[INFO] Running uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.07 s - in uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest +[INFO] Running uk.ac.sanger.artemis.plot.UserPlotTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.176 s - in uk.ac.sanger.artemis.plot.UserPlotTest +[INFO] Running uk.ac.sanger.artemis.FeatureSegmentTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.021 s - in uk.ac.sanger.artemis.FeatureSegmentTest +[INFO] Running uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest +[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.833 s - in uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest +[INFO] Running uk.ac.sanger.artemis.sequence.StrandTest +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.922 s - in uk.ac.sanger.artemis.sequence.StrandTest +[INFO] Running uk.ac.sanger.artemis.sequence.BasesTest +[INFO] Tests run: 28, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.455 s - in uk.ac.sanger.artemis.sequence.BasesTest [INFO] [INFO] Results: [INFO] @@ -2964,8 +3000,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 05:31 min -[INFO] Finished at: 2025-11-29T06:07:15-12:00 +[INFO] Total time: 05:43 min +[INFO] Finished at: 2024-10-28T01:57:29+14:00 [INFO] ------------------------------------------------------------------------ make[1]: Leaving directory '/build/reproducible-path/artemis-18.2.0+dfsg' create-stamp debian/debhelper-build-stamp @@ -2999,15 +3035,15 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 0.926 s -[INFO] Finished at: 2025-11-29T06:07:17-12:00 +[INFO] Total time: 0.853 s +[INFO] Finished at: 2024-10-28T01:57:32+14:00 [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -partemis --base-directory=/build/reproducible-path/artemis-18.2.0\+dfsg --non-explore Analysing pom.xml... > dpkg --search /usr/share/maven-repo/org/emboss/jemboss/*/* dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/maven-repo/org/emboss/jemboss -Nov 29, 2025 6:07:23 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve +Oct 28, 2024 1:57:39 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve SEVERE: Cannot resolve dependencies in /build/reproducible-path/artemis-18.2.0+dfsg/pom.xml: Dependency not found org.emboss:jemboss:jar:debian ERROR: pom.xml: dependency is not packaged in the Maven repository for Debian: org.emboss:jemboss:debian @@ -3051,12 +3087,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1961006/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1961006/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3581950 and its subdirectories -I: Current time: Sat Nov 29 06:07:57 -12 2025 -I: pbuilder-time-stamp: 1764439677 +I: removing directory /srv/workspace/pbuilder/1961006 and its subdirectories +I: Current time: Mon Oct 28 01:58:47 +14 2024 +I: pbuilder-time-stamp: 1730030327