Diff of the two buildlogs: -- --- b1/build.log 2025-11-20 01:33:11.623022141 +0000 +++ b2/build.log 2025-11-20 01:47:04.463956810 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Nov 19 13:25:20 -12 2025 -I: pbuilder-time-stamp: 1763601920 +I: Current time: Wed Dec 23 21:56:15 +14 2026 +I: pbuilder-time-stamp: 1798012575 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -26,53 +26,85 @@ dpkg-source: info: applying build-python-bindings.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1972294/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/390130/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 23 07:56 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/390130/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/390130/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='87862b31a623478a88939dbd07cd385b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1972294' - PS1='# ' - PS2='> ' + INVOCATION_ID=3d792fe731fb4170bbea3012f5d32cd4 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=390130 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iYsOznrG/pbuilderrc_tGMj --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iYsOznrG/b1 --logfile b1/build.log voronota_1.29.4415+ds-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iYsOznrG/pbuilderrc_Rcv6 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iYsOznrG/b2 --logfile b2/build.log voronota_1.29.4415+ds-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.57+deb13-cloud-arm64 #1 SMP Debian 6.12.57-1 (2025-11-05) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.57+deb13-cloud-arm64 #1 SMP Debian 6.12.57-1 (2025-11-05) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1972294/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/390130/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -200,7 +232,7 @@ Get: 80 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.9-1 [5057 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 swig arm64 4.4.0-1 [1405 kB] -Fetched 45.3 MB in 0s (100 MB/s) +Fetched 45.3 MB in 2s (19.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) @@ -482,8 +514,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Nov 20 01:25:47 UTC 2025. -Universal Time is now: Thu Nov 20 01:25:47 UTC 2025. +Local time is now: Wed Dec 23 07:57:30 UTC 2026. +Universal Time is now: Wed Dec 23 07:57:30 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -555,7 +587,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/voronota-1.29.4415+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../voronota_1.29.4415+ds-1_source.changes +I: user script /srv/workspace/pbuilder/390130/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/390130/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/voronota-1.29.4415+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../voronota_1.29.4415+ds-1_source.changes dpkg-buildpackage: info: source package voronota dpkg-buildpackage: info: source version 1.29.4415+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -572,7 +608,7 @@ debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds' dh_auto_configure -- -DEXPANSION_LT=ON - cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DEXPANSION_LT=ON .. + cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXPANSION_LT=ON .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. @@ -634,11 +670,12 @@ expansion_lt/swig/CMakeLists.txt:11 (swig_add_library) This warning is for project developers. Use -Wno-dev to suppress it. --- Configuring done (2.4s) --- Generating done (0.0s) +-- Configuring done (5.2s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR @@ -659,50 +696,50 @@ make[2]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/voronota.dir/build.make CMakeFiles/voronota.dir/depend make -f expansion_lt/CMakeFiles/voronota-lt.dir/build.make expansion_lt/CMakeFiles/voronota-lt.dir/depend -make -f expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/build.make expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/depend make[3]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' +make -f expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/build.make expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/depend make[3]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' -cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/voronota-1.29.4415+ds /build/reproducible-path/voronota-1.29.4415+ds/expansion_lt/swig /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/voronota-1.29.4415+ds 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"/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/depend.internal". -Scanning dependencies of target voronotalt_swig_compilation make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' +make -f CMakeFiles/voronota.dir/build.make CMakeFiles/voronota.dir/build make -f expansion_lt/CMakeFiles/voronota-lt.dir/build.make expansion_lt/CMakeFiles/voronota-lt.dir/build make[3]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' -make -f expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/build.make expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/build make[3]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' +Dependee "/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/depend.internal". +Scanning dependencies of target voronotalt_swig_compilation make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' -make -f CMakeFiles/voronota.dir/build.make CMakeFiles/voronota.dir/build +make -f expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/build.make expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/build make[3]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' -[ 3%] Swig compile voronotalt_python.i for python -[ 3%] Building CXX object expansion_lt/CMakeFiles/voronota-lt.dir/src/voronota_lt.cpp.o +[ 1%] Building CXX object expansion_lt/CMakeFiles/voronota-lt.dir/src/voronota_lt.cpp.o +[ 3%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_contacts.cpp.o cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -fopenmp -MD -MT expansion_lt/CMakeFiles/voronota-lt.dir/src/voronota_lt.cpp.o -MF CMakeFiles/voronota-lt.dir/src/voronota_lt.cpp.o.d -o CMakeFiles/voronota-lt.dir/src/voronota_lt.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/expansion_lt/src/voronota_lt.cpp -cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig && 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/build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_calculate_contacts.cpp -[ 7%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o +[ 5%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o +[ 7%] Swig compile voronotalt_python.i for python +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_calculate_path_centralities.cpp [ 9%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o -[ 11%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o -[ 13%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o +cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig && /usr/bin/cmake -E make_directory /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/_voronotalt.dir /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/_voronotalt.dir +[ 11%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o +[ 13%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_calculate_mock_solvent.cpp -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_calculate_path_centralities.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_calculate_vertices.cpp +[ 15%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_compare_files_as_sets.cpp +[ 17%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_compare_contacts.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_calculate_vertices_in_parallel.cpp -[ 15%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig && /usr/bin/cmake -E touch /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/_voronotalt.dir/voronotalt_pythonPYTHON.stamp -[ 17%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o -[ 19%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o -[ 21%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_demo_hypercut.cpp +[ 21%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o +[ 23%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_demo_blank.cpp -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_compare_contacts.cpp -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_compare_files_as_sets.cpp -[ 23%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o +[ 21%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_demo_polygon_triangulation.cpp +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_demo_hypercut.cpp cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig && /usr/bin/cmake -E env SWIG_LIB=/usr/share/swig/4.4.0 /usr/bin/swig -python -outdir /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig -c++ -interface _voronotalt -I/usr/include/python3.13 -I/build/reproducible-path/voronota-1.29.4415+ds/expansion_lt/swig -I/build/reproducible-path/voronota-1.29.4415+ds/expansion_lt/swig/../src -o /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/_voronotalt.dir/voronotalt_pythonPYTHON_wrap.cxx /build/reproducible-path/voronota-1.29.4415+ds/expansion_lt/swig/voronotalt_python.i make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' [ 23%] Built target voronotalt_swig_compilation @@ -746,7 +783,11 @@ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_interface_exposure_values.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_query_contacts_interface_exposure_values.cpp [ 56%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_simulating_unfolding.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_query_contacts_simulating_unfolding.cpp -[ 58%] Linking CXX shared module _voronotalt.so +[ 58%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_query_contacts_solvation_values.cpp +[ 60%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_reprint_hbp.cpp +[ 62%] Linking CXX shared module _voronotalt.so cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig && /usr/bin/cmake -E cmake_link_script CMakeFiles/_voronotalt.dir/link.txt --verbose=1 /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -755,11 +796,7 @@ /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/_voronotalt.dir/link.d -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -shared -o _voronotalt.so CMakeFiles/_voronotalt.dir/CMakeFiles/_voronotalt.dir/voronotalt_pythonPYTHON_wrap.cxx.o make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' -[ 58%] Built target _voronotalt -[ 60%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_query_contacts_solvation_values.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_query_contacts_solvation_values.cpp -[ 62%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_reprint_hbp.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_reprint_hbp.cpp +[ 62%] Built target _voronotalt [ 64%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_rotational_optimization_demo.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_rotational_optimization_demo.cpp [ 66%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o @@ -774,19 +811,12 @@ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_score_contacts_potential.cpp [ 76%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_score_contacts_potentials_stats.cpp -[ 78%] Linking CXX executable voronota-lt -cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt && /usr/bin/cmake -E cmake_link_script CMakeFiles/voronota-lt.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/voronota-lt.dir/link.d "CMakeFiles/voronota-lt.dir/src/voronota_lt.cpp.o" -o voronota-lt /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a -make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' -[ 78%] Built target voronota-lt -[ 80%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o +[ 78%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_score_contacts_quality.cpp -[ 82%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o +[ 80%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_score_scores.cpp -[ 84%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o +[ 82%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_simulate_potential_for_membrane_proteins.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_simulate_potential_for_membrane_proteins.cpp -[ 86%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_split_atoms_file.cpp In file included from /build/reproducible-path/voronota-1.29.4415+ds/src/modes/../scripting/operators/vcblocks.h:5, from /build/reproducible-path/voronota-1.29.4415+ds/src/modes/../scripting/script_execution_manager.h:173, from /build/reproducible-path/voronota-1.29.4415+ds/src/modes/../scripting/script_execution_manager_with_variant_output.h:4, @@ -807,10 +837,17 @@ /usr/include/c++/15/bits/stl_vector.h:1261:7: note: declared here 1261 | operator[](size_type __n) _GLIBCXX_NOEXCEPT | ^~~~~~~~ -[ 88%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o +[ 84%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_split_atoms_file.cpp +[ 86%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_vectorize_contact_environments.cpp +[ 88%] Linking CXX executable voronota-lt +cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt && /usr/bin/cmake -E cmake_link_script CMakeFiles/voronota-lt.dir/link.txt --verbose=1 [ 90%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_vectorize_contacts.cpp +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/voronota-lt.dir/link.d "CMakeFiles/voronota-lt.dir/src/voronota_lt.cpp.o" -o voronota-lt /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a +make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' +[ 90%] Built target voronota-lt [ 92%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_points.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_vectorize_points.cpp [ 94%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_write_balls_to_atoms_file.cpp.o @@ -841,7 +878,7 @@ make[2]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' - dh_auto_test +dh: command-omitted: The call to "dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install @@ -896,15 +933,15 @@ diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/voronota/usr/bin/voronota-lt debian/voronota/usr/bin/voronota were not linked against ld-linux-aarch64.so.1 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/voronota/usr/bin/voronota debian/voronota/usr/bin/voronota-lt were not linked against ld-linux-aarch64.so.1 (they use none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb +dpkg-deb: building package 'python3-voronotalt' in '../python3-voronotalt_1.29.4415+ds-1_arm64.deb'. +dpkg-deb: building package 'voronota-dbgsym' in '../voronota-dbgsym_1.29.4415+ds-1_arm64.deb'. dpkg-deb: building package 'voronota' in '../voronota_1.29.4415+ds-1_arm64.deb'. dpkg-deb: building package 'python3-voronotalt-dbgsym' in '../python3-voronotalt-dbgsym_1.29.4415+ds-1_arm64.deb'. -dpkg-deb: building package 'voronota-dbgsym' in '../voronota-dbgsym_1.29.4415+ds-1_arm64.deb'. -dpkg-deb: building package 'python3-voronotalt' in '../python3-voronotalt_1.29.4415+ds-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../voronota_1.29.4415+ds-1_arm64.buildinfo dpkg-genchanges --build=binary -O../voronota_1.29.4415+ds-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -912,12 +949,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/390130/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/390130/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1972294 and its subdirectories -I: Current time: Wed Nov 19 13:33:10 -12 2025 -I: pbuilder-time-stamp: 1763602390 +I: removing directory /srv/workspace/pbuilder/390130 and its subdirectories +I: Current time: Wed Dec 23 22:10:03 +14 2026 +I: pbuilder-time-stamp: 1798013403