Diff of the two buildlogs: -- --- b1/build.log 2025-10-21 16:04:05.700387692 +0000 +++ b2/build.log 2025-10-21 16:48:53.315070828 +0000 @@ -1,7 +1,6 @@ -W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build -I: Current time: Tue Oct 21 01:26:08 -12 2025 -I: pbuilder-time-stamp: 1761053168 +I: Current time: Tue Nov 24 12:32:44 +14 2026 +I: pbuilder-time-stamp: 1795473164 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -45,52 +44,85 @@ dpkg-source: info: applying zcf-simde-crc32c I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3513907/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/840742/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 23 22:32 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/840742/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/840742/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3513907' - PS1='# ' - PS2='> ' + INVOCATION_ID=0648becc19f14bcf8407171871b01283 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=840742 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.59DqiiWF/pbuilderrc_CPWv --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.59DqiiWF/b1 --logfile b1/build.log ncbi-blast+_2.17.0+ds-6.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/sbin/chroot' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.59DqiiWF/pbuilderrc_kujS --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.59DqiiWF/b2 --logfile b2/build.log ncbi-blast+_2.17.0+ds-6.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3513907/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/840742/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -242,7 +274,7 @@ Get: 84 http://deb.debian.org/debian forky/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 libuv1-dev arm64 1.51.0-2 [188 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 time arm64 1.9-0.3 [48.0 kB] -Fetched 48.1 MB in 0s (136 MB/s) +Fetched 48.1 MB in 0s (108 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20000 files and directories currently installed.) @@ -601,7 +633,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ncbi-blast+-2.17.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ncbi-blast+_2.17.0+ds-6_source.changes +I: user script /srv/workspace/pbuilder/840742/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/840742/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ncbi-blast+-2.17.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ncbi-blast+_2.17.0+ds-6_source.changes dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.17.0+ds-6 dpkg-buildpackage: info: source distribution unstable @@ -632,78 +668,78 @@ done ) ; \ ) ; \ done -/bin/sh: 2: cd: can't cd to c++/src/objects/CMakeLists.txt -/bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in -/bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd -/bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found +/bin/sh: line 2: cd: c++/src/objects/CMakeLists.txt: Not a directory +/bin/sh: line 2: cd: c++/src/objects/Makefile.in: Not a directory +/bin/sh: line 2: cd: c++/src/objects/Makefile.sources: Not a directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 2: cd: c++/src/objects/nt_sources.cmd: Not a directory +/bin/sh: line 2: cd: c++/src/objects/nt_sources.sh: Not a directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory make[1]: [debian/rules:189: override_dh_clean] Error 127 (ignored) for x in c++/src/objtools/eutils/* ; do \ (cd "$x" && ( \ @@ -714,23 +750,23 @@ done ) ; \ ) ; \ done -/bin/sh: 2: cd: can't cd to c++/src/objtools/eutils/CMakeLists.txt -/bin/sh: 2: cd: can't cd to c++/src/objtools/eutils/Makefile.in -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found -/bin/sh: 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found +/bin/sh: line 2: cd: c++/src/objtools/eutils/CMakeLists.txt: Not a directory +/bin/sh: line 2: cd: c++/src/objtools/eutils/Makefile.in: Not a directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory make[1]: [debian/rules:190: override_dh_clean] Error 127 (ignored) cd c++/src/objtools/eutils/efetch && \ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh --xsd efetch purge_sources -/bin/sh: 2: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: not found +/bin/sh: line 2: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/new_module.sh: No such file or directory make[1]: [debian/rules:191: override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module @@ -1983,82 +2019,82 @@ make[2]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build' /usr/bin/make -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build' -cd corelib/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -cd util/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -cd serial/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd corelib/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +cd util/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +cd serial/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +cd serial/datatool/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +cd algo/blast/composition_adjustment/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +cd util/tables/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +cd connect/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +cd algo/blast/core/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +cd util/sequtil/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/corelib' -cd serial/datatool/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd objtools/blast/services/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util' +cd db/sqlite/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +cd objmgr/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/datatool' -cd algo/blast/composition_adjustment/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -cd util/tables/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -cd connect/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -cd algo/blast/core/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/tables' -cd util/sequtil/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -cd objtools/blast/services/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/corelib' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/core' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/sequtil' -cd db/sqlite/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -cd objmgr/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/corelib' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/corelib' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util' -cd objtools/blast/seqdb_reader/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd objtools/blast/seqdb_reader/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' -cd objtools/logging/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/corelib' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/datatool' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/datatool' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/datatool' +cd objtools/logging/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/logging' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/tables' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/tables' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/tables' -cd objtools/readers/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/readers' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/datatool' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/datatool' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/datatool' -cd objmgr/util/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/util' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/core' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/core' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/core' -cd objtools/seqmasks_io/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/sequtil' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/sequtil' +cd objtools/readers/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +cd objmgr/util/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/sequtil' +cd objtools/seqmasks_io/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' +cd util/profile/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -cd util/profile/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd algo/blast/dbindex/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/readers' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/util' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/profile' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/sequtil' -cd algo/blast/dbindex/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' -cd algo/dustmask/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/dustmask' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/core' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/core' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/core' +cd algo/dustmask/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr' -cd algo/winmask/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd algo/winmask/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/dustmask' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/winmask' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -cd objtools/alnmgr/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd objtools/alnmgr/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/LIBSSH.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' @@ -2068,416 +2104,422 @@ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/logging' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/logging' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/logging' -cd algo/blast/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd algo/blast/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/profile' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/profile' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/profile' +cd util/compress/zlib_cloudflare/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/util' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/util' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/util' -cd util/compress/zlib_cloudflare/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib_cloudflare' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/util' +cd util/compress/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' +cd objtools/data_loaders/genbank/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/seqmasks_io' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/seqmasks_io' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/profile' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/profile' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/profile' -cd util/compress/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -cd objtools/data_loaders/genbank/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd objtools/data_loaders/genbank/cache/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/alnmgr' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/readers' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/readers' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/corelib' -cd objtools/data_loaders/genbank/cache/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -cd objtools/data_loaders/genbank/id1/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/dustmask' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/dustmask' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/dustmask' +cd objtools/data_loaders/genbank/id1/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' -cd objtools/data_loaders/genbank/id2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/winmask' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/winmask' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/winmask' +cd objtools/data_loaders/genbank/id2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/readers' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/readers' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' -cd connect/services/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd connect/services/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/dustmask' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/dustmask' -cd objtools/pubseq_gateway/client/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/corelib' +cd objtools/pubseq_gateway/client/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/winmask' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/winmask' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/winmask' -cd cgi/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/alnmgr' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/alnmgr' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/alnmgr' +cd cgi/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/api' -cd html/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd html/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/html' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/readers' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/readers' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib_cloudflare' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib_cloudflare' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib_cloudflare' -cd objtools/align_format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -cd objtools/blast/blastdb_format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' -make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' -NOTE: skipping project "fcgi_mt" due to unmet requirements -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' +cd objtools/align_format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +cd objtools/blast/blastdb_format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format' +cd objtools/data_loaders/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' -cd objtools/data_loaders/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/readers' -cd connect/ext/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/api' +cd connect/ext/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -cd algo/blast/blastinput/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' +cd algo/blast/blastinput/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' +make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' +NOTE: skipping project "fcgi_mt" due to unmet requirements make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -cd objtools/eutils/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/readers' +cd objtools/eutils/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -cd algo/blast/proteinkmer/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/html' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/html' +cd algo/blast/proteinkmer/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/html' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' -cd util/xregexp/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/html' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/html' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/html' +cd util/xregexp/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/xregexp' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format' -cd objtools/edit/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +cd objtools/edit/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/edit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -cd objtools/cleanup/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/cleanup' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +cd objtools/cleanup/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -cd objtools/format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd objtools/format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/cleanup' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/format' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' +cd algo/blast/format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/api' -cd algo/blast/format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd algo/blast/blastinput/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/format' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +cd algo/blast/dbindex/makeindex/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/FASTCGIPP.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' NOTE: skipping project "fcgi_mt" due to unmet requirements make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/xregexp' -cd algo/blast/blastinput/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -cd algo/blast/dbindex/makeindex/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +cd algo/blast/igblast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/edit' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/edit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/edit' -cd algo/blast/igblast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/igblast' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -cd objtools/simple/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' +cd objtools/simple/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/simple' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/cleanup' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/cleanup' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/cleanup' -cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/format' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/format' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/format' -cd algo/blast/unit_tests/blast_format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' -cd algo/blast/unit_tests/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/format' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/format' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +cd algo/blast/unit_tests/blast_format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/format' -cd objtools/blast/seqdb_writer/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd algo/blast/unit_tests/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +cd objtools/blast/seqdb_writer/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' -cd algo/blast/vdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' +cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +cd algo/blast/vdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/vdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' +cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/simple' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/simple' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/simple' -cd app/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd app/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -cd sra/readers/sra/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/sra' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -cd sra/data_loaders/csra/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/csra' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -cd sra/data_loaders/wgs/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/wgs' +cd sra/readers/sra/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/sra' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/igblast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/igblast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/igblast' -cd app/blastvdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' +cd sra/data_loaders/csra/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/csra' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +cd sra/data_loaders/wgs/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -cd app/dustmasker/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/dustmasker' +cd app/blastvdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/wgs' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/legacy_blast.pl -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/LIBSSH.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' NOTE: skipping project "xconnsftp" due to unmet requirements +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/simple' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/simple' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/simple' +cd app/dustmasker/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -cd algo/segmask/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd algo/segmask/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/dustmasker' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/segmask' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/legacy_blast.pl +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/vdb' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/vdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/vdb' -cd app/segmasker/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd app/segmasker/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/segmasker' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/csra' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/csra' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/csra' -cd app/winmasker/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' /bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin /bin/ln -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/update_blastdb.pl make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/winmasker' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/wgs' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/wgs' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/wgs' -cd objmgr/split/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/split' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/winmasker' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/dustmasker' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/dustmasker' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/dustmasker' -cd objtools/align_format/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd app/winmasker/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/winmasker' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/csra' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/csra' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/csra' +cd objmgr/split/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/split' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/wgs' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/wgs' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/wgs' +cd objtools/align_format/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format/unit_test' make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' /bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin /bin/ln -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/get_species_taxids.sh make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/winmasker' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/winmasker' -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/windowmasker_2.2.22_adapter.py -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/winmasker' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/winmasker' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/sra' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/sra' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/segmask' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/segmask' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/segmask' +cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/segmasker' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/segmasker' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/segmasker' -cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' +cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' /bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin /bin/ln -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/cleanup-blastdb-volumes.py make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/segmask' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/segmask' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/segmask' -cd objtools/blast/seqdb_reader/test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/winmasker' +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/windowmasker_2.2.22_adapter.py +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/winmasker' +cd objtools/blast/seqdb_reader/test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/winmasker' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format/unit_test' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/sra' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/sra' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/split' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/split' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/split' -cd objtools/blast/services/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -cd corelib/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/services/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/split' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/split' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/split' +cd corelib/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +cd algo/blast/composition_adjustment/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/corelib' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/sra' +cd util/tables/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/tables' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +cd db/sqlite/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=sqlitewrapp UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/corelib' +cd objtools/logging/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=logging UNIX_PROJ="" sources= configurables=configurables.null make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/winmasker' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/winmasker' -cd algo/blast/composition_adjustment/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/sra' -cd util/tables/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null -cd db/sqlite/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=sqlitewrapp UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/tables' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -cd objtools/logging/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=logging UNIX_PROJ="" sources= configurables=configurables.null +cd util/profile/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=utrtprof UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/logging' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/corelib' -cd util/profile/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=utrtprof UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/profile' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] 137 | s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) | ^~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -cd util/compress/zlib_cloudflare/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=zlib_cf UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib_cloudflare' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -cd html/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/html' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -cd corelib/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/corelib' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd util/compress/zlib_cloudflare/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=zlib_cf UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib_cloudflare' +cd html/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/corelib' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/html' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' +cd corelib/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/corelib' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/corelib' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/tables' /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.so .libtables.so.stamp @@ -2487,30 +2529,22 @@ /bin/ln -f .tables.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.tables.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/tables' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/tables' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -cd util/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null +cd util/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd connect/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util' -cd connect/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/.#lock-map. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/.#lock-map. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbsm.h:39, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbsm.c:36: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C23 [-Wpedantic] @@ -2519,7 +2553,15 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C23 [-Wpedantic] 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:63, +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefixIn file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:63, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbsm.c:37: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbsm.c: In function 'LBSM_LookupService': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] @@ -2537,26 +2579,24 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbsm.c:120:9: note: in expansion of macro 'CORE_LOG_X' 120 | CORE_LOG_X(1, eLOG_Error, "Invalid preceding entry in service lookup"); | ^~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_once.h:38, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbsm_ipc.c:37: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiatomic.h: In function 'NCBI_SwapPointers': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiatomic.h:171:1: warning: no return statement in function returning non-void [-Wreturn-type] 171 | } | ^ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] + 200 | s_DistinctAlignmentsLength(BlastCompo_Alignment * list) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] + 185 | s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) + | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:63, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_once.h:40: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbsm_ipc.c: In function 's_Shmem_Lock': @@ -2667,8 +2707,6 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbsm_ipc.c:318:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' 318 | CORE_LOGF_ERRNO_X(9, eLOG_Error, error, | ^~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -2869,21 +2907,10 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbsm_ipc.c:647:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' 647 | CORE_LOGF_ERRNO_X(21, eLOG_Warning, errno, | ^~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefixmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' @@ -2892,19 +2919,6 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib_cloudflare' -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/adler32.c -o adler32.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/adler32_simd.c -o adler32_simd.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -march=armv8-a+crc -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/crc32.c -o crc32.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -march=armv8-a+crc -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/deflate.c -o deflate.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] - 200 | s_DistinctAlignmentsLength(BlastCompo_Alignment * list) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] - 185 | s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) - | ^~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_once.h:38, @@ -2913,19 +2927,44 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiatomic.h:171:1: warning: no return statement in function returning non-void [-Wreturn-type] 171 | } | ^ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbsm.c -o ncbi_lbsm.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbsm_ipc.c -o ncbi_lbsm_ipc.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_types.c -o ncbi_types.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_core.c -o ncbi_core.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o +/bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libcomposition_adjustment.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libcomposition_adjustment.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libcomposition_adjustment.so +/bin/ln -f .composition_adjustment.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.composition_adjustment.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:63, +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib_cloudflare' +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/adler32.c -o adler32.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/adler32_simd.c -o adler32_simd.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -march=armv8-a+crc -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/crc32.c -o crc32.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -march=armv8-a+crc -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/deflate.c -o deflate.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:63, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_util.c:34: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_util.c: In function 'CORE_SetLOGFILE_NAME_Ex': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] @@ -2943,47 +2982,8 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_util.c:172:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' 172 | CORE_LOGF_ERRNO_X(1, eLOG_Error, errno, | ^~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' --map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o -/bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libcomposition_adjustment.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libcomposition_adjustment.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libcomposition_adjustment.so -/bin/ln -f .composition_adjustment.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.composition_adjustment.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inftrees.c: In function 'z_inflate_table': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inftrees.c:218:28: warning: 'base' may be used uninitialized [-Wmaybe-uninitialized] - 218 | here.val = base[work[sym] - match]; - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inftrees.c:50:31: note: 'base' was declared here - 50 | const unsigned short FAR *base; /* base value table to use */ - | ^~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inftrees.c:217:44: warning: 'extra' may be used uninitialized [-Wmaybe-uninitialized] - 217 | here.op = (unsigned char)(extra[work[sym] - match]); - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inftrees.c:51:31: note: 'extra' was declared here - 51 | const unsigned short FAR *extra; /* extra bits table to use */ - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inftrees.c:212:12: warning: 'match' may be used uninitialized [-Wmaybe-uninitialized] - 212 | if (work[sym] + 1 < match) { - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inftrees.c:52:14: note: 'match' was declared here - 52 | unsigned match; /* use base and extra for symbol >= match */ - | ^~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' @@ -2992,17 +2992,22 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/infback.c -o infback.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inffast.c -o inffast.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inflate.c -o inflate.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inftrees.c -o inftrees.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/trees.c -o trees.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_once.h:38, +cd util/sequtil/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/sequtil' +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_once.h:38, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_socket.c:77: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiatomic.h: In function 'NCBI_SwapPointers': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiatomic.h:171:1: warning: no return statement in function returning non-void [-Wreturn-type] 171 | } | ^ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:63, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_once.h:40: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_socket.c: In function 's_DoLog': @@ -3083,8 +3088,6 @@ 885 | CORE_LOG_ERRNO_X(161, eLOG_Error, errno, | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_socket.c: In function 's_InitAPI_': -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_socket.c:952:32: warning: format '%p' expects argument of type 'void *', but argument 3 has type 'FSSLSetup' {aka 'const struct SOCKSSL_struct * (*)(void)'} [-Wformat=] 952 | sprintf(buf, "%p()", s_SSLSetup); | ~^ ~~~~~~~~~~ @@ -3514,27 +3517,6 @@ 4057 | CORE_LOGF_ERRNO_EXX(16, eLOG_Trace, | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Close_': -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:63, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connector.c:34: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connector.c: In function 'METACONN_Remove': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 225 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connector.c:42:5: note: in expansion of macro 'CORE_LOGF_X' - 42 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connector.c:64:13: note: in expansion of macro 'METACONN_LOG' - 64 | METACONN_LOG(34, eLOG_Error, - | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -3550,25 +3532,6 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_socket.c:4137:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' 4137 | CORE_LOGF_ERRNO_EXX(17, eLOG_Trace, | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connector.c: In function 'METACONN_Insert': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 225 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connector.c:42:5: note: in expansion of macro 'CORE_LOGF_X' - 42 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connector.c:93:9: note: in expansion of macro 'METACONN_LOG' - 93 | METACONN_LOG(33, connector->next ? eLOG_Error : eLOG_Critical, - | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -5195,7 +5158,139 @@ | ^~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/logging' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/logging/message.cpp -o message.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/logging/listener.cpp -o listener.o +/bin/rm -f libxlogging.so .libxlogging.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libxlogging.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC message.o listener.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libxlogging.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxlogging.so +/bin/ln -f .xlogging.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xlogging.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/logging' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/logging' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:63, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connector.c:34: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connector.c: In function 'METACONN_Remove': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 225 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connector.c:42:5: note: in expansion of macro 'CORE_LOGF_X' + 42 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connector.c:64:13: note: in expansion of macro 'METACONN_LOG' + 64 | METACONN_LOG(34, eLOG_Error, + | ^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connector.c: In function 'METACONN_Insert': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 225 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connector.c:42:5: note: in expansion of macro 'CORE_LOGF_X' + 42 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connector.c:93:9: note: in expansion of macro 'METACONN_LOG' + 93 | METACONN_LOG(33, connector->next ? eLOG_Error : eLOG_Critical, + | ^~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inftrees.c: In function 'z_inflate_table': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inftrees.c:218:28: warning: 'base' may be used uninitialized [-Wmaybe-uninitialized] + 218 | here.val = base[work[sym] - match]; + | ^ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inftrees.c:50:31: note: 'base' was declared here + 50 | const unsigned short FAR *base; /* base value table to use */ + | ^~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inftrees.c:217:44: warning: 'extra' may be used uninitialized [-Wmaybe-uninitialized] + 217 | here.op = (unsigned char)(extra[work[sym] - match]); + | ^ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inftrees.c:51:31: note: 'extra' was declared here + 51 | const unsigned short FAR *extra; /* extra bits table to use */ + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inftrees.c:212:12: warning: 'match' may be used uninitialized [-Wmaybe-uninitialized] + 212 | if (work[sym] + 1 < match) { + | ^ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inftrees.c:52:14: note: 'match' was declared here + 52 | unsigned match; /* use base and extra for symbol >= match */ + | ^~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/infback.c -o infback.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inffast.c -o inffast.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inflate.c -o inflate.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/inftrees.c -o inftrees.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/trees.c -o trees.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/zutil.c -o zutil.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/ncbi_z_compress.c -o ncbi_z_compress.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/uncompr.c -o uncompr.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/gzclose.c -o gzclose.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/gzlib.c -o gzlib.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd cgi/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/cgi/.#lock-map. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/profile' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/profile/rtprofile.cpp -o rtprofile.o +/bin/rm -f libutrtprof.so .libutrtprof.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libutrtprof.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC rtprofile.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libutrtprof.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libutrtprof.so +/bin/ln -f .utrtprof.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.utrtprof.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/profile' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/profile' +antic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.c -o ncbi_priv.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_util.c -o ncbi_util.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_socket.c -o ncbi_socket.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connector.c -o ncbi_connector.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c -o ncbi_connection.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_once.h:38, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:36: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiatomic.h: In function 'NCBI_SwapPointers': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c: In function 'x_CatchallCallback': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiatomic.h:171:1: warning: no return statement in function returning non-void [-Wreturn-type] + 171 | } + | ^ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c:191:50: warning: format '%p' expects argument of type 'void *', but argument 4 has type 'CONN' {aka 'struct SConnectionTag *'} [-Wformat=] 191 | sprintf(errmsg, "Unknown callback #%u for 0x%p, assume corruption", | ~^ @@ -5205,6 +5300,8 @@ | ~~~~ | | | CONN {aka struct SConnectionTag *} +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:63, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c:34: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] @@ -5489,6 +5586,16 @@ | ~^ | | | void * +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/impl/ncbi_servicep.h:36, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_servicep.h:40, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:37: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_service.h: At top level: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C23 [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C23 [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -5760,6 +5867,9 @@ 645 | CONN_LOG_EX(12, GetTimeout, eLOG_Error, errbuf, 0); | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Wait': +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:63, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_once.h:40: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c: In function 'x_SetupHttpProxy': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -5784,6 +5894,36 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c:661:5: note: in expansion of macro 'CONN_NOT_NULL' 661 | CONN_NOT_NULL(13, Wait); | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 225 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:596:13: note: in expansion of macro 'CORE_LOGF_X' + 596 | CORE_LOGF_X(14, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 225 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:614:9: note: in expansion of macro 'CORE_LOGF_X' + 614 | CORE_LOGF_X(parsed ? 15 : 10, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c:114:29: warning: format '%p' expects argument of type 'void *', but argument 3 has type 'CONN' {aka 'struct SConnectionTag *'} [-Wformat=] 114 | sprintf(x_errmsg, "Corrupt connection handle 0x%p", conn); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ @@ -5845,6 +5985,22 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c:709:9: note: in expansion of macro 'CONN_LOG' 709 | CONN_LOG(event != eIO_Read ? 15 : 14, Wait, level, | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c: In function 'ConnNetInfo_CreateInternal': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 225 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:869:9: note: in expansion of macro 'CORE_LOGF_X' + 869 | CORE_LOGF_X(11, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c: In function 's_CONN_Write': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -5879,6 +6035,21 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:948:13: note: in expansion of macro 'CORE_LOGF_X' + 948 | CORE_LOGF_X(12, info->http_proxy_leak ? eLOG_Warning : eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 225 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c:72:7: note: in expansion of macro 'CORE_LOGF_X' 72 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ @@ -6083,6 +6254,7 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c:878:5: note: in expansion of macro 'CONN_NOT_NULL' 878 | CONN_NOT_NULL(20, Flush); | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c: In function 'ConnNetInfo_Log': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -6104,6 +6276,15 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c:893:9: note: in expansion of macro 'CONN_LOG' 893 | CONN_LOG(21, Flush, status == eIO_Timeout ? eLOG_Trace : eLOG_Warning, | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:142:54: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 142 | LOG_Write(lg, code, subcode, level, THIS_MODULE, CORE_CURRENT_FUNCTION, \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2303:9: note: in expansion of macro 'LOG_WRITE' + 2303 | LOG_WRITE(lg, NCBI_C_ERRCODE_X, 11, + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c: In function 's_CONN_Read': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -6126,6 +6307,7 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c:946:17: note: in expansion of macro 'CONN_LOG' 946 | CONN_LOG(22, Read, eLOG_Critical, "Cannot read data"); | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c: In function 'URL_ConnectEx': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -6153,6 +6335,21 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' + 148 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2522:9: note: in expansion of macro 'CORE_LOG_X' + 2522 | CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 225 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ @@ -6165,6 +6362,36 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c:997:13: note: in expansion of macro 'CONN_LOG' 997 | CONN_LOG(23, Read, level, "Unable to read data"); | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 225 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2559:9: note: in expansion of macro 'CORE_LOGF_X' + 2559 | CORE_LOGF_X(3, eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 225 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2582:9: note: in expansion of macro 'CORE_LOGF_X' + 2582 | CORE_LOGF_X(4, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Read': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -6201,6 +6428,21 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c:1049:5: note: in expansion of macro 'CONN_NOT_NULL' 1049 | CONN_NOT_NULL(24, Read); | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 225 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + 244 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 168 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2634:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 2634 | CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c:114:59: note: format string is defined here 114 | sprintf(x_errmsg, "Corrupt connection handle 0x%p", conn); \ | ~^ @@ -6212,6 +6454,21 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 225 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + 244 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 168 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2651:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 2651 | CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 225 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ @@ -6230,7 +6487,38 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c:1049:5: note: in expansion of macro 'CONN_NOT_NULL' 1049 | CONN_NOT_NULL(24, Read); | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 225 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' + 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2700:9: note: in expansion of macro 'CORE_LOGF_X' + 2700 | CORE_LOGF_X(7, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_ReadLine': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c: In function 'URL_Connect': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 225 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' + 156 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2734:9: note: in expansion of macro 'CORE_LOG' + 2734 | CORE_LOG(eLOG_Warning, "[URL_Connect] " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -6255,6 +6543,21 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c:1096:5: note: in expansion of macro 'CONN_NOT_NULL' 1096 | CONN_NOT_NULL(25, ReadLine); | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 225 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' + 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' + 148 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2738:9: note: in expansion of macro 'CORE_LOG_X' + 2738 | CORE_LOG_X(9, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c:114:29: warning: format '%p' expects argument of type 'void *', but argument 3 has type 'CONN' {aka 'struct SConnectionTag *'} [-Wformat=] 114 | sprintf(x_errmsg, "Corrupt connection handle 0x%p", conn); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ @@ -6277,6 +6580,21 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 225 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' + 244 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 168 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2780:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 2780 | CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 225 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ @@ -6593,33 +6911,6 @@ | ^~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/logging' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/logging/message.cpp -o message.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/logging/listener.cpp -o listener.o -/bin/rm -f libxlogging.so .libxlogging.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libxlogging.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC message.o listener.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libxlogging.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxlogging.so -/bin/ln -f .xlogging.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xlogging.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/logging' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/zutil.c -o zutil.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/ncbi_z_compress.c -o ncbi_z_compress.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/uncompr.c -o uncompr.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/gzclose.c -o gzclose.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/compress/zlib_cloudflare /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib_cloudflare/gzlib.c -o gzlib.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THmake[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/logging' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -6637,245 +6928,6 @@ /bin/ln -f .zcf.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.zcf.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib_cloudflare' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib_cloudflare' -antic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.c -o ncbi_priv.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_util.c -o ncbi_util.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_socket.c -o ncbi_socket.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connector.c -o ncbi_connector.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connection.c -o ncbi_connection.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_once.h:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:36: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiatomic.h: In function 'NCBI_SwapPointers': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiatomic.h:171:1: warning: no return statement in function returning non-void [-Wreturn-type] - 171 | } - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/impl/ncbi_servicep.h:36, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_servicep.h:40, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:37: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_service.h: At top level: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C23 [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C23 [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:63, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_once.h:40: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c: In function 'x_SetupHttpProxy': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 225 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:596:13: note: in expansion of macro 'CORE_LOGF_X' - 596 | CORE_LOGF_X(14, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 225 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:614:9: note: in expansion of macro 'CORE_LOGF_X' - 614 | CORE_LOGF_X(parsed ? 15 : 10, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c: In function 'ConnNetInfo_CreateInternal': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 225 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:869:9: note: in expansion of macro 'CORE_LOGF_X' - 869 | CORE_LOGF_X(11, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 225 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:948:13: note: in expansion of macro 'CORE_LOGF_X' - 948 | CORE_LOGF_X(12, info->http_proxy_leak ? eLOG_Warning : eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c: In function 'ConnNetInfo_Log': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:142:54: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 142 | LOG_Write(lg, code, subcode, level, THIS_MODULE, CORE_CURRENT_FUNCTION, \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2303:9: note: in expansion of macro 'LOG_WRITE' - 2303 | LOG_WRITE(lg, NCBI_C_ERRCODE_X, 11, - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c: In function 'URL_ConnectEx': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 225 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' - 148 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2522:9: note: in expansion of macro 'CORE_LOG_X' - 2522 | CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 225 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2559:9: note: in expansion of macro 'CORE_LOGF_X' - 2559 | CORE_LOGF_X(3, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 225 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2582:9: note: in expansion of macro 'CORE_LOGF_X' - 2582 | CORE_LOGF_X(4, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 225 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - 244 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 168 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2634:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 2634 | CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 225 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - 244 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 168 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2651:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 2651 | CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 225 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG' - 152 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2700:9: note: in expansion of macro 'CORE_LOGF_X' - 2700 | CORE_LOGF_X(7, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c: In function 'URL_Connect': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 225 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:156:5: note: in expansion of macro 'DO_CORE_LOG' - 156 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2734:9: note: in expansion of macro 'CORE_LOG' - 2734 | CORE_LOG(eLOG_Warning, "[URL_Connect] " - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 225 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:240:5: note: in expansion of macro 'DO_CORE_LOG_X' - 240 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:148:5: note: in expansion of macro 'DO_CORE_LOG' - 148 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2738:9: note: in expansion of macro 'CORE_LOG_X' - 2738 | CORE_LOG_X(9, eLOG_Error, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_util.h:171:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 171 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:225:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 225 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:244:5: note: in expansion of macro 'DO_CORE_LOG_X' - 244 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 168 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c:2780:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 2780 | CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/html' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/html/node.cpp -o node.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/html/html.cpp -o html.o @@ -6893,8 +6945,8 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd util/sequtil/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/sequtil' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -6905,21 +6957,34 @@ /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/profile' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/profile/rtprofile.cpp -o rtprofile.o -/bin/rm -f libutrtprof.so .libutrtprof.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libutrtprof.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC rtprofile.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libutrtprof.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libutrtprof.so -/bin/ln -f .utrtprof.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.utrtprof.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/profile' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/profile' -cd util/compress/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o +/bin/rm -f libsqlitewrapp.so .libsqlitewrapp.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libsqlitewrapp.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC sqlitewrapp.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lsqlite3 -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libsqlitewrapp.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libsqlitewrapp.so +/bin/ln -f .sqlitewrapp.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.sqlitewrapp.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd util/xregexp/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/xregexp' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/xregexp' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/impl/ncbi_servicep.h:36, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_servicep.h:40, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbsmd.h:37, @@ -7000,12 +7065,6 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | + 2/*"=\0"*/) + strlen(typ))) { | ~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o @@ -7612,10 +7671,10 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_sendmail.c:731:9: note: in expansion of macro 'SENDMAIL_RETURN2' 731 | SENDMAIL_RETURN2(31, "Protocol error in QUIT command", buffer); | ^~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd serial/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' +cd util/compress/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/api' In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:63, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_heapmgr.c:115: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Create': @@ -8148,8 +8207,6 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C23 [-Wpedantic] 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ | ^~~~~~~~~~ -cd cgi/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_priv.h:63, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_socket_connector.c:38: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_socket_connector.c: In function 's_VT_Open': @@ -8168,7 +8225,6 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_socket_connector.c:173:13: note: in expansion of macro 'CORE_LOGF_X' 173 | CORE_LOGF_X(33, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/cgi/.#lock-map. /ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o @@ -8630,25 +8686,13 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_http_connector.c:2586:9: note: in expansion of macro 'CORE_LOGF_X' 2586 | CORE_LOGF_X(24, eLOG_Error, | ^~~~~~~~~~~ -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o -/bin/rm -f libsqlitewrapp.so .libsqlitewrapp.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libsqlitewrapp.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC sqlitewrapp.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lsqlite3 -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libsqlitewrapp.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libsqlitewrapp.so -/bin/ln -f .sqlitewrapp.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.sqlitewrapp.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' -cd util/xregexp/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/xregexp' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/xregexp' -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/impl/ncbi_servicep.h:36, +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/sequtil' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/sequtil/sequtil.cpp -o sequtil.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/sequtil/sequtil_In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/impl/ncbi_servicep.h:36, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_servicep.h:40, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_service_connector.c:36: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C23 [-Wpedantic] @@ -8981,10 +9025,28 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_ftp_connector.c:2419:9: note: in expansion of macro 'CORE_LOG' 2419 | CORE_LOG(eLOG_Critical, "fFTP_UseProxy not yet implemented"); | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd serial/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' -.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +shared.cpp -o sequtil_shared.o +/bin/rm -f libsequtil.so .libsequtil.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libsequtil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libsequtil.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libsequtil.so +/bin/ln -f .sequtil.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.sequtil.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/sequtil' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/sequtil' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/cgi/cgiapp.cpp -o cgiapp.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/cgi/cgictx.cpp -o cgictx.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/cgi/ncbires.cpp -o ncbires.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/cgi/ref_args.cpp -o ref_args.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/re.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o @@ -8999,6 +9061,7 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C23 [-Wpedantic] 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ | ^~~~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbsm.h:39, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbsmd.c:33: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C23 [-Wpedantic] @@ -9129,13 +9192,32 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbsmd.c:938:37: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] 938 | if ((info = SERV_CopyInfoEx(&svc->info, name)) != 0) { | ^~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/sequtil' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/sequtil/sequtil.cpp -o sequtil.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/sequtil/sequtil_In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/impl/ncbi_servicep.h:36, +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/html/components.cpp -o components.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/html/commentdiag.cpp -o commentdiag.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/html/indentstream.cpp -o indentstream.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/html/html_exception.cpp -o html_exception.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o +/bin/rm -f libxhtml.so .libxhtml.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libxhtml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libxhtml.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxhtml.so +/bin/ln -f .xhtml.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xhtml.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/html' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/html' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/hookdata.cpp -o hookdata.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/hookdatakey.cpp -o hookdatakey.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/typeinfo.cpp -o typeinfo.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objectinfo.cpp -o objectinfo.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objectiter.cpp -o objectiter.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objectio.cpp -o objectio.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fIn file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/impl/ncbi_servicep.h:36, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_servicep.h:40, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_dispd.h:37, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_dispd.c:36: @@ -10638,12 +10720,6 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/parson.c:140:12: note: length computed here 140 | return parson_strndup(string, strlen(string)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/parson.c: In function 'x_json_value_init_string': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/parson.c:135:5: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 135 | strncpy(output_string, string, n); @@ -10651,18 +10727,6 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/parson.c:1119:18: note: length computed here 1119 | string_len = strlen(string); | ^~~~~~~~~~~~~~ -path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/html/components.cpp -o components.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/html/commentdiag.cpp -o commentdiag.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/html/indentstream.cpp -o indentstream.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/html/html_exception.cpp -o html_exception.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o -/bin/rm -f libxhtml.so .libxhtml.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libxhtml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libxhtml.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxhtml.so -/bin/ln -f .xhtml.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xhtml.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/html' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/html' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/parson.c: In function 'x_json_parse_string_with_comments': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/parson.c:135:5: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 135 | strncpy(output_string, string, n); @@ -10830,18 +10894,6 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_localip.c:343:5: note: in expansion of macro 'CORE_LOG' 343 | CORE_LOG(eLOG_Warning, "Using default local IPv4 specs"); | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/api/compress.cpp -o compress.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/api/stream.cpp -o stream.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/api/streambuf.cpp -o streambuf.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/api/stream_util.cpp -o stream_util.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/api/bzip2.cpp -o bzip2.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/api/lzo.cpp/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/impl/ncbi_servicep.h:36, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_servicep.h:40, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbdns.h:37, @@ -11940,29 +11992,19 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_lbdns.c:1619:5: note: in expansion of macro 'CORE_LOGF' 1619 | CORE_LOGF(data->debug ? eLOG_Note : eLOG_Trace, | ^~~~~~~~~ -shared.cpp -o sequtil_shared.o -/bin/rm -f libsequtil.so .libsequtil.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libsequtil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libsequtil.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libsequtil.so -/bin/ln -f .sequtil.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.sequtil.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/sequtil' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/sequtil' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/cgi/cgiapp.cpp -o cgiapp.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/cgi/cgictx.cpp -o cgictx.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include 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-Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_ -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/continfo.cpp -o continfo.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/stltypes.cpp -o stltypes.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/memberid.cpp -o memberid.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/memberlist.cpp -o memberlist.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/item.cpp -o item.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/classinfob.cpp -o classinfob.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REESOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REE/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -rity -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o +NTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/member.cpp -o member.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/classinfo.cpp -o classinfo.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/variant.cpp -o variant.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/choice.cpp -o choice.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/choiceptr.cpp -o choiceptr.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/aliasinfo.cpp -o aliasinfo.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blastrity -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.so .libxcgi.so.stamp /usr/bin/g++ -std=gnu++20 -shared -o libxcgi.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxutil -lxncbi -lm -lpthread @@ -12020,16 +12056,37 @@ /bin/ln -f .xcgi.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xcgi.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' -NTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/member.cpp -o member.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/classinfo.cpp -o classinfo.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/variant.cpp -o variant.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/choice.cpp -o choice.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/choiceptr.cpp -o choiceptr.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/aliasinfo.cpp -o aliasinfo.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/connect_misc.cpp: In member function 'ncbi::CServiceDiscovery::TServers ncbi::CServiceDiscovery::operator()()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/connect_misc.cpp:153:47: warning: bitwise operation between different enumeration types 'ESERV_Type' and 'ESERV_TypeSpecial' is deprecated [-Wdeprecated-enum-enum-conversion] - 153 | const TSERV_Type types = fSERV_Standalone | fSERV_IncludeStandby; - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2+-2.17.0+ds/c++/src/serial/objistr.cpp -o objistr.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objostr.cpp -o objostr.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objcopy.cpp -o objcopy.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/iterator.cpp -o iterator.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/serial.cpp -o serial.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/delaybuf.cpp -o delaybuf.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/pack_string.cpp -o pack_string.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-b/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libbz2.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libz.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libzstd.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/api/archive_.cpp -o archive_.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o +/bin/rm -f libxcompress.so .libxcompress.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libxcompress.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o lzo.o zstd.o zlib.o zlib_cloudflare.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lzcf -lxutil -lxncbi -lbz2 -lz -lzstd -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libxcompress.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxcompress.so +/bin/ln -f .xcompress.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xcompress.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/api' In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/impl/ncbi_servicep.h:36, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_servicep.h:40, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_gnutls.c:36: @@ -12366,38 +12423,23 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_tls.c:214:5: note: in expansion of macro 'CORE_LOGF_X' 214 | CORE_LOGF_X(47, eLOG_Error, | ^~~~~~~~~~~ -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libbz2.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libz.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libzstd.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/api/archive_.cpp -o archive_.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o -/bin/rm -f libxcompress.so .libxcompress.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libxcompress.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o lzo.o zstd.o zlib.o zlib_cloudflare.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lzcf -lxutil -lxncbi -lbz2 -lz -lzstd -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libxcompress.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxcompress.so -/bin/ln -f .xcompress.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xcompress.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/api' -+-2.17.0+ds/c++/src/serial/objistr.cpp -o objistr.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objostr.cpp -o objostr.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objcopy.cpp -o objcopy.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/iterator.cpp -o iterator.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/serial.cpp -o serial.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/delaybuf.cpp -o delaybuf.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/pack_string.cpp -o pack_string.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/exception.cpp -o exception.o +last+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/exception.cpp -o exception.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objhook.cpp -o objhook.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objlist.cpp -o objlist.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objstack.cpp -o objstack.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objostrasn.cpp -o objostrasn.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objistrasn.cpp -o objistrasn.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standardantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standar/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/connect_misc.cpp: In member function 'ncbi::CServiceDiscovery::TServers ncbi::CServiceDiscovery::operator()()': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/connect_misc.cpp:153:47: warning: bitwise operation between different enumeration types 'ESERV_Type' and 'ESERV_TypeSpecial' is deprecated [-Wdeprecated-enum-enum-conversion] + 153 | const TSERV_Type types = fSERV_Standalone | fSERV_IncludeStandby; + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +d -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objostrasnb.cpp -o objostrasnb.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objistrasnb.cpp -o objistrasnb.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objostrxml.cpp -o objostrxml.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objistrxml.cpp -o objistrxml.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objostrjson.cpp -o objostrjson.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objistrjson.cpp -o objistrjson.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/buildantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ncbi_tls.c -o ncbi_tls.o /bin/rm -f libxconnect.so .libxconnect.so.stamp /usr/bin/g++ -std=gnu++20 -shared -o libxconnect.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -Wl,--as-needed -fPIC ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_lbsmd.o ncbi_dispd.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread @@ -12406,8 +12448,10 @@ /bin/ln -f .xconnect.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xconnect.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -cd algo/blast/core/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/core/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/core' +cd connect/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=xthrserv UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_TwoHit': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/aa_ungapped.c:484:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 484 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); @@ -12422,6 +12466,11 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/aa_ungapped.c:758:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 758 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); | ^ +cd connect/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=xxconnect2 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' +cd connect/ext/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=xconnext UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnext to make__ext_common per /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ext/.#lock-map. /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_engine.c: In function 'BLAST_PreliminarySearchEngine': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_engine.c:1365:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 1365 | (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; @@ -12432,23 +12481,6 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_engine.c:1590:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 1590 | ((T_MB_IdxEndSearchIndication)( | ^ -cd connect/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=xthrserv UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/core' -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werrcd connect/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=xxconnect2 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_kappa.c: In function 'Blast_RedoAlignmentCore_MT': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_kappa.c:3003:27: warning: unused variable 'forbidden' [-Wunused-variable] - 3003 | Blast_ForbiddenRanges forbidden = {0,}; - | ^~~~~~~~~ -cd connect/ext/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=xconnext UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnext to make__ext_common per /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ext/.#lock-map. In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ext/../ncbi_priv.h:63, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ext/ncbi_crypt.c:35: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ext/ncbi_crypt.c: In function 'CRYPT_EncodeString': @@ -12538,6 +12570,20 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C23 [-Wpedantic] 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ | ^~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/core' +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werr/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_kappa.c: In function 'Blast_RedoAlignmentCore_MT': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_kappa.c:3003:27: warning: unused variable 'forbidden' [-Wunused-variable] + 3003 | Blast_ForbiddenRanges forbidden = {0,}; + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp: In member function 'virtual void ncbi::CDBLB_ServiceMapper::GetServerOptions(const std::string&, ncbi::IDBServiceMapper::TOptions*)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp:337:33: warning: taking address of packed member of 'SLBSM_HostLoad' may result in an unaligned pointer value [-Waddress-of-packed-member] + 337 | HINFO_Status(hinfo, &load.status); + | ^~~~~~~~~~~~ or=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o @@ -12565,16 +12611,6 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/core/blast_lookup.h:181:66: note: expected 'TNaLookupHashFunction' {aka 'unsigned int (*)(unsigned char *, unsigned int)'} but argument is of type 'void *' 181 | TNaLookupHashFunction hash_func, | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ -d -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objostrasnb.cpp -o objostrasnb.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objistrasnb.cpp -o objistrasnb.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objostrxml.cpp -o objostrxml.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objistrxml.cpp -o objistrxml.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objostrjson.cpp -o objostrjson.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/objistrjson.cpp -o objistrjson.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/buil/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp: In member function 'virtual void ncbi::CDBLB_ServiceMapper::GetServerOptions(const std::string&, ncbi::IDBServiceMapper::TOptions*)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp:337:33: warning: taking address of packed member of 'SLBSM_HostLoad' may result in an unaligned pointer value [-Waddress-of-packed-member] - 337 | HINFO_Status(hinfo, &load.status); - | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_nascan.c: In function 's_NaChooseScanSubject': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_nascan.c:291:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 291 | lookup->scansub_callback = (void *)s_BlastNaScanSubject_8_4; @@ -12707,7 +12743,13 @@ /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_message.c -o blast_message.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_S/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_options.c: In function 'LookupTableOptionsValidate': +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_S/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_options.c: In function 'LookupTableOptionsValidate': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_options.c:1330:13: warning: unused variable 'bytes_written' [-Wunused-variable] 1330 | int bytes_written = snprintf(buffer, DIM(buffer), | ^~~~~~~~~~~~~ @@ -12810,7 +12852,26 @@ /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -W/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_util.c: In function 'BlastProgram2Number': +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Wd/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/serializable.cpp -o serializable.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/serialobject.cpp -o serialobject.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/pathhook.cpp -o pathhook.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/rpcbase.cpp -o rpcbase.o +/bin/rm -f libxser.so .libxser.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libxser.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libxser.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxser.so +/bin/ln -f .xser.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xser.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' +cd serial/datatool/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/datatool' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/datatool' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/datatool.cpp -o datatool.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/type.cpp -o type.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/namespace.cpp -o namespace.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/statictype.cpp -o statictype.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/enumtype.cpp -o enumtype.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_util.c: In function 'BlastProgram2Number': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_util.c:306:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 306 | else if (strcasecmp("mapper", program) == 0) | ^~ @@ -12822,25 +12883,7 @@ /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_util.c -o blast_util.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libmbedtls.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libmbedx509.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libmbedcrypto.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libz.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libresolv.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-pmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ext/ncbi_ifconf.c -o ncbi_ifconf.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ext/ncbi_crypt.c -o ncbi_crypt.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/ext/ncbi_dblb.c -o ncbi_dblb.o @@ -12859,17 +12902,24 @@ /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.ild/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxconnect -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread +ild/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxconnect -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread /bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnext.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib /bin/ln -f libxconnext.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnext.so /bin/ln -f .xconnext.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xconnext.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libmbedtls.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libmbedx509.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libmbedcrypto.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libz.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libresolv.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/threaded_server.cpp -o threaded_server.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/server.cpp -o server.o @@ -12882,81 +12932,33 @@ /bin/ln -f .xthrserv.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xthrserv.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/pattern.c -o pattern.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=cd connect/services/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=xconnserv UNIX_PROJ="" sources= configurables=configurables.null +cd connect/services/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=xconnserv UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' -format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_program.c -o blast_program.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/split_query.c -o split_qu/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/phi_lookup.c: In function 'SPHIPatternSearchBlkNew': +ath/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2./build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/phi_lookup.c: In function 'SPHIPatternSearchBlkNew': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/phi_lookup.c:635:30: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 635 | localPattern[posIndex-1] = 1; | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/phi_lookup.c:411:11: note: at offset -1 into destination object 'localPattern' of size 330 411 | Uint1 localPattern[PHI_MAX_PATTERN_LENGTH]; /*local variable to hold for each position whether | ^~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/grid_worker.cpp -o grid_worker.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/grid_client.cpp -o grid_client.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ery.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -p/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -d/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/serializable.cpp -o serializable.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/serialobject.cpp -o serialobject.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/pathhook.cpp -o pathhook.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/rpcbase.cpp -o rpcbase.o -/bin/rm -f libxser.so .libxser.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libxser.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libxser.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxser.so -/bin/ln -f .xser.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xser.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' -cd serial/datatool/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/datatool' -edantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/jumper.c -o jumper.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o -/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o -/bin/rm -f libblast.so .libblast.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libblast.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libblast.so -/bin/ln -f .blast.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.blast.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/core' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/core' -/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/grid_globals.cpp -o grid_globals.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/grid_rw_impl.cpp -o grid/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/pattern.c -o pattern.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libuv.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libnghttp2.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -12976,157 +12978,154 @@ /usr/bin/g++ -std=gnu++20 -shared -o libxxconnect2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC ncbi_uv_nghttp2.o ncbi_http2_session.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxconnect -lxncbi -luv -lnghttp2 -lm -lpthread || (echo "project_tree_builder's suggestions failed. Trying original settings:"; echo /usr/bin/g++ -std=gnu++20 -shared -o libxxconnect2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC ncbi_uv_nghttp2.o ncbi_http2_session.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxconnect -luv -lnghttp2 -lm -lpthread ; /usr/bin/g++ -std=gnu++20 -shared -o libxxconnect2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC ncbi_uv_nghttp2.o ncbi_http2_session.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxconnect -luv -lnghttp2 -lm -lpthread ) /bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect2.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib /bin/ln -f libxxconnect2.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxxconnect2.so -/bin/ln -f .xxconnect2-static.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xxconnect2-static.dep /bin/ln -f .xxconnect2.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xxconnect2.dep +/bin/ln -f .xxconnect2-static.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xxconnect2-static.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/datatool' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/datatool.cpp -o datatool.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/type.cpp -o type.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/namespace.cpp -o namespace.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/statictype.cpp -o statictype.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/enumtype.cpp -o enumtype.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netservice_api.cpp: In member function 'void ncbi::SNetServiceImpl::DiscoverServersIfNeeded()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netservice_api.cpp:939:55: warning: bitwise operation between different enumeration types 'ESERV_Type' and 'ESERV_TypeSpecial' is deprecated [-Wdeprecated-enum-enum-conversion] - 939 | const TSERV_Type types = fSERV_Standalone | fSERV_IncludeStandby | - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -_rw_impl.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/remote_app.cpp -o remote_app.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/srv_connections.cpp -o srv_connections.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netservice_api.cpp -o netservice_api.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netservice_params.cpp -o netservice_params.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o -/usr/bin/g2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/reftype.cpp -o reftype.o +2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/reftype.cpp -o reftype.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/unitype.cpp -o unitype.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netcache_search.cpp -o netcache_search.o -/usr/bin/g++ -std=gnu++ -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/stdstr.cpp -o stdstr.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/incmake[5]: Entering directory 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_program.c -o blast_program.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/split_query.c -o split_query.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -p/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +edantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/jumper.c -o jumper.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o +/usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o +/bin/rm -f libblast.so .libblast.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libblast.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libblast.so +/bin/ln -f .blast.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.blast.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/core' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/core' + -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/classstr.cpp -o classstr.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/choicestr.cpp -o choicestr.o /usr/bin/g++ 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-I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o +/usr/bin/g/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netservice_api.cpp: In member function 'void ncbi::SNetServiceImpl::DiscoverServersIfNeeded()': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netservice_api.cpp:939:55: warning: bitwise operation between different enumeration types 'ESERV_Type' and 'ESERV_TypeSpecial' is deprecated [-Wdeprecated-enum-enum-conversion] + 939 | const TSERV_Type types = fSERV_Standalone | fSERV_IncludeStandby | + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +NTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/code.cpp -o 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-I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/compound_id.cpp -o compound_id.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-ma_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE 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-I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fnetschedule_api_expt.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netcache_key.cpp -o netcache_key.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netcache_params.cpp -o netcache_params.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netcache_api.cpp -o netcache_api.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netcache_search.cpp -o netcache_search.o +/usr/bin/g++ -std=gnu++PIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/jsdlexer.cpp -o jsdlexer.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/jsdparser.cpp -o jsdparser.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share//build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libmbedtls.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libmbedx509.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libmbedcrypto.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libz.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libresolv.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -p=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o -/bin/rm -f libxconnserv.so .libxconnserv.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libxconnserv.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxthrserv -lxconnect -lxutil -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libxconnserv.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnserv.so -/bin/ln -f .xconnserv.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xconnserv.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' -dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/util.cpp -o util.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/clparser.cpp -o clparser.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netstorage.cpp -o netstorage.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/compound_id.cpp -o compound_id.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-madpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool /bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin /bin/ln -f datatool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/datatool' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/datatool' -cd objects/general/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -cd objects/biblio/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd objects/general/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +cd objects/biblio/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +cd objects/medline/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +cd objects/pub/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/biblio' -cd objects/medline/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -cd objects/pub/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medline' -cd objects/seqcode/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -cd objects/seq/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pub' -cd objects/seqset/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' -cd objects/scoremat/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -cd objects/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -cd objects/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqset' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' -cd objects/genomecoll/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/scoremat' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastdb' -cd objects/seqedit/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqedit' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/scoremat' +cd objects/seqcode/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ - -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m general.asn -M "" -oA \ + -oc general -or objects/general -odi -od general.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.24.0 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/scoremat' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/scoremat' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/pub' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ @@ -13135,42 +13134,20 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/pub' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/scoremat' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/pub' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ - -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ - -datatool: 2.24.0 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastdb' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ - -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ + -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.24.0 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/pub' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset' -make[7]: warning: -j12 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastdb' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m general.asn -M "" -oA \ - -oc general -or objects/general -odi -od general.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ - -datatool: 2.24.0 +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/pub' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ @@ -13179,30 +13156,16 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/pub' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ - -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ - -datatool: 2.24.0 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ - -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ - -datatool: 2.24.0 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +cd objects/seq/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' +cd objects/seqset/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqset' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqcode' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m seqcode.asn -M "" -oA \ @@ -13211,12 +13174,63 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqcode' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqcode' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqcode' -Waiting for /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll/make_asn.lock/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/scoremat/scoremat.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +cd objects/scoremat/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/scoremat' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/biblio' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/biblio' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/biblio' +cd objects/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' +cd objects/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' +cd objects/genomecoll/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medline' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medline' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medline' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pub' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pub' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pub' +cd objects/seqedit/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +cd objects/seqsplit/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqsplit' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqedit' +make[7]: warning: -j12 forced in submake: resetting jobserver mode. +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ + -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ + +datatool: 2.24.0 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset' +cd objects/submit/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/submit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' +cd objects/variation/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/scoremat' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ + -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ + +datatool: 2.24.0 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/scoremat' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/scoremat' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/scoremat' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/scoremat/scoremat.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blast' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ @@ -13226,8 +13240,28 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blast' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastdb' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ + -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ + +datatool: 2.24.0 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastdb' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blast' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastdb' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ + -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ + +datatool: 2.24.0 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqedit' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ @@ -13236,12 +13270,25 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqedit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqedit' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqedit' make[7]: warning: -j12 forced in submake: resetting jobserver mode. +Waiting for /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll/make_asn.lock/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqsplit' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ + -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ + +datatool: 2.24.0 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqsplit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqsplit' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqsplit' make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' status=0 ; \ -MAKE="/usr/bin/make -j12 --jobserver-auth=fifo:/tmp/GMfifo3637818"; \ +MAKE="/usr/bin/make -j12 --jobserver-auth=fifo:/tmp/GMfifo1045688"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/../$x ; \ @@ -13252,7 +13299,7 @@ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status -/usr/bin/make -j12 --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src +/usr/bin/make -j12 --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqalign' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ @@ -13261,7 +13308,7 @@ datatool: 2.24.0 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqalign' -/usr/bin/make -j12 --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src +/usr/bin/make -j12 --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqblock' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ @@ -13269,53 +13316,23 @@ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.24.0 -make[7]: Leaving dimake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/scoremat' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/scoremat' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/scoremat' -cd objects/seqsplit/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pub' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pub' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pub' -cd objects/submit/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +make[7]: Leaving di/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/variation' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ + -oc variation -or objects/variation -odi -od variation.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ + +datatool: 2.24.0 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/variation' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/variation' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqset' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqset' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/variation' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqset' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/submit' -cd objects/variation/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' -cd objects/id1/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd objects/id1/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medline' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medline' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medline' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastdb' -cd objects/id2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastdb' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' -cd objects/taxon1/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -cd objects/blastxml/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[7]: warning: -j12 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqedit' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqedit' -cd objects/blastxml2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/biblio' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/biblio' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/biblio' -cd objects/pubmed/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pubmed' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/submit' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ @@ -13326,28 +13343,30 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/submit' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/submit' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/submit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/scoremat' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/scoremat' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/scoremat' +cd objects/id2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' +make[7]: warning: -j12 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqedit' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqedit' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqedit' +cd objects/taxon1/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastdb' +cd objects/blastxml/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqsplit' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqsplit' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqsplit' +cd objects/blastxml2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/variation' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ - -oc variation -or objects/variation -odi -od variation.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ - -datatool: 2.24.0 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/variation' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqsplit' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ - -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ - -datatool: 2.24.0 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqsplit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/variation' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/id1' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ @@ -13358,22 +13377,12 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/id1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/id1' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/id1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqsplit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqsplit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/variation' -File blastxml.module not found. Using defaults... -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m blastxml.asn -M "" -oA \ - -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ - -datatool: 2.24.0 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqsplit/seqsplit.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' +cd objects/pubmed/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pubmed' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqsplit/seqsplit.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/id2' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ @@ -13384,7 +13393,12 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/id2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/id2' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/id2' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/submit' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/submit' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/submit' +cd objtools/eutils/efetch/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/efetch' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ @@ -13395,9 +13409,21 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1' +File blastxml.module not found. Using defaults... +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m blastxml.asn -M "" -oA \ + -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ + +datatool: 2.24.0 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml' make[7]: warning: -j12 forced in submake: resetting jobserver mode. File blastxml2.module not found. Using defaults... -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml2' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m blastxml2.asn -M "" -oA \ @@ -13407,7 +13433,10 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml2' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/pubmed' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ @@ -13416,28 +13445,17 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/pubmed' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/pubmed' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/pubmed' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' -cd objtools/eutils/efetch/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/efetch' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/submit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/submit' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' -cd objtools/eutils/egquery/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/submit' -cd objtools/eutils/ehistory/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +cd objtools/eutils/egquery/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqsplit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' rectory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqblock' -/usr/bin/make -j12 --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src +/usr/bin/make -j12 --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ @@ -13446,7 +13464,7 @@ datatool: 2.24.0 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat' -/usr/bin/make -j12 --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src +/usr/bin/make -j12 --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ @@ -13455,30 +13473,21 @@ datatool: 2.24.0 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc' -/usr/bin/make -j12 --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproduciblemake[7]: warning: -j12 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqsplit' -cd objtools/eutils/einfo/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/einfo' +/usr/bin/make -j12 --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproduciblemake[7]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml' -cd objtools/eutils/elink/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd objtools/eutils/ehistory/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/ehistory' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml2' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml2' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml2' -cd objects/entrez2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' +cd objtools/eutils/einfo/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pubmed' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pubmed' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/einfo' File egquery.module not found. Using defaults... -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/egquery' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m egquery.dtd -M "" -oA \ @@ -13487,12 +13496,20 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/egquery' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pubmed' -cd objtools/eutils/epost/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/egquery' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/egquery' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pubmed' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pubmed' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pubmed' +cd objtools/eutils/elink/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/elink' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' +make[7]: warning: -j12 forced in submake: resetting jobserver mode. File ehistory.module not found. Using defaults... -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/ehistory' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m ehistory.dtd -M "" -oA \ @@ -13501,10 +13518,22 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/ehistory' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/egquery' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/ehistory' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/ehistory' -make[7]: warning: -j12 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' +cd objects/entrez2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +File einfo.module not found. Using defaults... +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/einfo' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m einfo.dtd -M "" -oA \ + -oc einfo -or objtools/eutils/einfo -odi -od einfo.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd einfo.dump \ + +datatool: 2.24.0 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/einfo' -path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqres' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ @@ -13514,7 +13543,7 @@ datatool: 2.24.0 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqres' -/usr/bin/make -j12 --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src +/usr/bin/make -j12 --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqtable' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ @@ -13524,20 +13553,15 @@ datatool: 2.24.0 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqtable' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' -File einfo.module not found. Using defaults... -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/einfo' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m einfo.dtd -M "" -oA \ - -oc einfo -or objtools/eutils/einfo -odi -od einfo.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd einfo.dump \ - -datatool: 2.24.0 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/einfo' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/einfo' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/einfo' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' +cd objtools/eutils/epost/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/epost' File elink.module not found. Using defaults... -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/elink' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m elink.dtd -M "" -oA \ @@ -13546,13 +13570,30 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/elink' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' +cd objtools/eutils/esearch/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/elink' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esearch' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/elink' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/egquery' +cd objtools/eutils/espell/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/espell' +File efetch.module not found. Using defaults... +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=efetch MODULE_PATH=objtools/eutils/efetch MODULE_ASN=efetch.xsd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/efetch' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m efetch.xsd -M "" -oA \ + -oc efetch -or objtools/eutils/efetch -odi -od efetch.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd efetch.dump \ + +datatool: 2.24.0 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/efetch' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/efetch' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/efetch' File epost.module not found. Using defaults... -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/epost' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m epost.dtd -M "" -oA \ @@ -13561,7 +13602,9 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/epost' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/epost' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/epost' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/entrez2' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m entrez2.asn -M "" -oA \ @@ -13570,45 +13613,29 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/entrez2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/epost' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/epost' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/entrez2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/entrez2' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' -cd objtools/eutils/esearch/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' -cd objtools/eutils/espell/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' -cd objtools/eutils/esummary/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/ehistory' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/ehistory' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -cd objtools/eutils/uilist/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources +cd objtools/eutils/esummary/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/einfo' +cd objtools/eutils/uilist/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/egquery' -cd objects/gbseq/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/gbseq' -File esummary.module not found. Using defaults... -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esummary' +File espell.module not found. Using defaults... +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/espell' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m esummary.dtd -M "" -oA \ - -oc esummary -or objtools/eutils/esummary -odi -od esummary.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd esummary.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m espell.dtd -M "" -oA \ + -oc espell -or objtools/eutils/espell -odi -od espell.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd espell.dump \ datatool: 2.24.0 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esummary' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esummary' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqblock/seqblock.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqres/seqres.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/espell' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqblock/seqblock.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqres/seqres.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ @@ -13617,9 +13644,8 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esummary' File esearch.module not found. Using defaults... -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esearch' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m esearch.dtd -M "" -oA \ @@ -13628,37 +13654,36 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esearch' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/espell' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esearch' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/espell' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esearch' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/elink' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/elink' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/elink' -cd objects/medlars/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medlars' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/epost' -cd objects/taxon3/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon3' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/einfo' -cd objects/valid/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' -File espell.module not found. Using defaults... -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/espell' +cd objects/gbseq/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/gbseq' +File esummary.module not found. Using defaults... +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esummary' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m espell.dtd -M "" -oA \ - -oc espell -or objtools/eutils/espell -odi -od espell.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd espell.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m esummary.dtd -M "" -oA \ + -oc esummary -or objtools/eutils/esummary -odi -od esummary.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd esummary.dump \ datatool: 2.24.0 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/espell' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esummary' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esummary' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/epost' +cd objects/medlars/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esummary' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medlars' File uilist.module not found. Using defaults... -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/uilist' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m uilist.dtd -M "" -oA \ @@ -13667,7 +13692,24 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/uilist' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/efetch' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/efetch' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/efetch' +cd objects/taxon3/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/uilist' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon3' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/uilist' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esearch' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esearch' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esearch' +cd objects/valid/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/espell' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/espell' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/espell' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrez2' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/gbseq' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m gbseq.asn -M "" -oA \ @@ -13676,13 +13718,16 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/gbseq' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/uilist' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/espell' +cd objects/general/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/gbseq' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/uilist' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' +cd objects/seqcode/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/gbseq' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/espell' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medlars' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ @@ -13691,22 +13736,12 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medlars' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrez2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medlars' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/valid' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m valid.asn -M "" -oA \ - -oc valid -or objects/valid -odi -od valid.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ - -datatool: 2.24.0 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/valid' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/valid' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/medlars' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/valid' -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon3' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ @@ -13715,70 +13750,73 @@ datatool: 2.24.0 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon3' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esearch' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon3' -cd objects/general/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon3' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' -cd objects/seqcode/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' -cd objects/blastxml/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/gbseq' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/gbseq' -cd objects/blastxml2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/espell' -cd objtools/eutils/egquery/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=egquery UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/uilist' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/uilist' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/uilist' -cd objtools/eutils/ehistory/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=ehistory UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +cd objects/blastxml/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon3' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrez2' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrez2' -File efetch.module not found. Using defaults... -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=efetch MODULE_PATH=objtools/eutils/efetch MODULE_ASN=efetch.xsd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/efetch' +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/valid' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m efetch.xsd -M "" -oA \ - -oc efetch -or objtools/eutils/efetch -odi -od efetch.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd efetch.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m valid.asn -M "" -oA \ + -oc valid -or objects/valid -odi -od valid.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.24.0 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/efetch' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/efetch' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/efetch' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/valid' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/gbseq' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/gbseq' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/gbseq' +cd objects/blastxml2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrez2' -cd objtools/eutils/einfo/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=einfo UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/valid' +cd objtools/eutils/egquery/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=egquery UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/valid' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml2' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/egquery' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medlars' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medlars' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medlars' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon3' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon3' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon3' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/efetch' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/efetch' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/efetch' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libmbedtls.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libmbedx509.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libmbedcrypto.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libz.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libresolv.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +cd objtools/eutils/ehistory/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=ehistory UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +cd objtools/eutils/einfo/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=einfo UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/einfo' +p=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o +/bin/rm -f libxconnserv.so .libxconnserv.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libxconnserv.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxthrserv -lxconnect -lxutil -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libxconnserv.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnserv.so +/bin/ln -f .xconnserv.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xconnserv.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' +cd objtools/eutils/elink/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=elink UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/elink' . -Acquired /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll/make_asn.lock for PID 3697594 (make_asn) -/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all +Acquired /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll/make_asn.lock for PID 1068507 (make_asn) +/usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ @@ -13794,18 +13832,52 @@ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genomecoll' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genomecoll' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genomecoll' -cd objtools/eutils/elink/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=elink UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/elink' -cd objects/entrez2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null +cd objects/entrez2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrez2' -cd objtools/eutils/epost/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=epost UNIX_PROJ="" sources= configurables=configurables.null +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +cd objtools/eutils/epost/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=epost UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o +/bin/rm -f libblastxml.so .libblastxml.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libblastxml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blastxml__.o blastxml___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libblastxml.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libblastxml.so +/bin/ln -f .blastxml.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.blastxml.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml' +cd objtools/eutils/esearch/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=esearch UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esearch' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o +/bin/rm -f libseqcode.so .libseqcode.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libseqcode.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC seqcode__.o seqcode___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libseqcode.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libseqcode.so +/bin/ln -f .seqcode.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.seqcode.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' +cd objtools/eutils/espell/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=espell UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/espell' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/egquery' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/egquery/egquery__.cpp -o egquery__.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/egquery/egquery___.cpp -o egquery___.o @@ -13816,6 +13888,8 @@ /bin/ln -f .egquery.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.egquery.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/egquery' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/egquery' +cd objtools/eutils/esummary/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=esummary UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -13828,6 +13902,15 @@ /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml2' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o +/bin/rm -f libblastxml2.so .libblastxml2.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libblastxml2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blastxml2__.o blastxml2___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libblastxml2.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libblastxml2.so +/bin/ln -f .blastxml2.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.blastxml2.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/einfo' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o @@ -13838,38 +13921,7 @@ /bin/ln -f .einfo.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.einfo.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/einfo' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/einfo' -cd objtools/eutils/esearch/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=esearch UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o -/bin/rm -f libseqcode.so .libseqcode.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libseqcode.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC seqcode__.o seqcode___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libseqcode.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libseqcode.so -/bin/ln -f .seqcode.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.seqcode.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' -cd objtools/eutils/espell/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=espell UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/espell' -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o -/bin/rm -f libblastxml.so .libblastxml.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libblastxml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blastxml__.o blastxml___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libblastxml.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libblastxml.so -/bin/ln -f .blastxml.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.blastxml.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml' -cd objtools/eutils/esummary/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=esummary UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml2' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -13886,25 +13938,9 @@ /bin/ln -f .ehistory.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.ehistory.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/ehistory' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -cd objtools/eutils/uilist/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=uilist UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/eutils/uilist/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=uilist UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/uilist' -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml2' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o -/bin/rm -f libblastxml2.so .libblastxml2.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libblastxml2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blastxml2__.o blastxml2___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libblastxml2.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libblastxml2.so -/bin/ln -f .blastxml2.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.blastxml2.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml2' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml2' -cd objects/gbseq/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null +cd objects/gbseq/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/gbseq' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -13960,6 +13996,22 @@ /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esummary/esummary__.cpp -o esummary__.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o +/bin/rm -f libesummary.so .libesummary.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libesummary.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC esummary__.o esummary___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libesummary.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libesummary.so +/bin/ln -f .esummary.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.esummary.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esearch' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esearch/esearch__.cpp -o esearch__.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o @@ -13976,22 +14028,27 @@ /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general__.cpp -o general__.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general___.cpp -o general___.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/uoconv.cpp -o uoconv.o +/bin/rm -f libgeneral.so .libgeneral.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libgeneral.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC general__.o general___.o uoconv.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxser -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libgeneral.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libgeneral.so +/bin/ln -f .general.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.general.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' +cd objects/biblio/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null +cd objects/valid/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/biblio' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esummary/esummary__.cpp -o esummary__.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o -/bin/rm -f libesummary.so .libesummary.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libesummary.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC esummary__.o esummary___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libesummary.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libesummary.so -/bin/ln -f .esummary.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.esummary.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/elink' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/elink/elink__.cpp -o elink__.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/elink/elink___.cpp -o elink___.o @@ -14002,16 +14059,9 @@ /bin/ln -f .elink.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.elink.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/elink' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/elink' -cd objtools/eutils/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=eutils UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/eutils/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=eutils UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/eutils.cpp -o eutils.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/efetch.cpp -o efetch.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/einfo.cpp -o einfo.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/esearch.cpp -o esearch.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/egquery.cpp -o egquery.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/epost.cpp -o epost.o -/usr/bin/g+/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -14027,28 +14077,16 @@ /bin/ln -f .entrez2.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.entrez2.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrez2' -cd objects/entrez2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null +cd objects/entrez2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrez2' -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general__.cpp -o general__.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/general___.cpp -o general___.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/general/uoconv.cpp -o uoconv.o -/bin/rm -f libgeneral.so .libgeneral.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libgeneral.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC general__.o general___.o uoconv.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxser -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libgeneral.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libgeneral.so -/bin/ln -f .general.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.general.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' -cd objects/biblio/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/biblio' -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/api' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/eutils.cpp -o eutils.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/efetch.cpp -o efetch.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/einfo.cpp -o einfo.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/esearch.cpp -o esearch.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/egquery.cpp -o egquery.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/epost.cpp -o epost.o +/usr/bin/g+/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -14064,25 +14102,22 @@ /bin/ln -f .gbseq.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.gbseq.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/gbseq' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/gbseq' -cd objects/valid/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -+ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/elink.cpp -o elink.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/esummary.cpp -o esummary.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/espell.cpp -o espell.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o -/bin/rm -f libeutils.so .libeutils.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libeutils.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -leinfo -lesearch -legquery -lepost -lelink -lesummary -lespell -luilist -lehistory -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libeutils.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libeutils.so -/bin/ln -f .eutils.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.eutils.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/valid/valid__.cpp -o valid__.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/valid/valid___.cpp -o valid___.o +/bin/rm -f libvalid.so .libvalid.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libvalid.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC valid__.o valid___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lgeneral -lxser -lxregexp -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libvalid.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libvalid.so +/bin/ln -f .valid.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.valid.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -14106,22 +14141,23 @@ /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/valid/valid__.cpp -o valid__.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/valid/valid___.cpp -o valid___.o -/bin/rm -f libvalid.so .libvalid.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libvalid.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC valid__.o valid___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lgeneral -lxser -lxregexp -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libvalid.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libvalid.so -/bin/ln -f .valid.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.valid.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. ++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/elink.cpp -o elink.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/esummary.cpp -o esummary.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/espell.cpp -o espell.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o +/bin/rm -f libeutils.so .libeutils.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libeutils.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -leinfo -lesearch -legquery -lepost -lelink -lesummary -lespell -luilist -lehistory -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libeutils.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libeutils.so +/bin/ln -f .eutils.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.eutils.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/biblio' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/biblio/biblio___.cpp -o biblio___.o @@ -14133,8 +14169,8 @@ /bin/ln -f .biblio.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.biblio.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/biblio' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/biblio' -cd objects/medline/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null -cd objects/medlars/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null +cd objects/medline/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null +cd objects/medlars/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medline' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medlars' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -14169,9 +14205,9 @@ /bin/ln -f .medline.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.medline.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medline' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medline' -cd objects/pub/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null +cd objects/pub/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null +cd objects/pubmed/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pub' -cd objects/pubmed/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pubmed' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -14189,7 +14225,7 @@ /bin/ln -f .pubmed.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.pubmed.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pubmed' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pubmed' -cd objtools/eutils/efetch/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=efetch UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/eutils/efetch/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=efetch UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/efetch' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -14207,7 +14243,7 @@ /bin/ln -f .pub.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.pub.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pub' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pub' -cd objects/seq/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seq/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seq/seq__.cpp -o seq__.o @@ -14280,22 +14316,18 @@ /bin/ln -f .seq.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.seq.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' -cd objects/seqset/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null -cd objects/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null -cd objects/genomecoll/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null -cd objects/variation/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seqset/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null +cd objects/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null +cd objects/genomecoll/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null +cd objects/variation/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null +cd objects/taxon1/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null +cd objects/taxon3/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastdb' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqset' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genomecoll' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' -cd objects/taxon1/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null -cd objects/taxon3/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqset' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon3' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1/cache.cpp: In member function 'void ncbi::objects::CDomainStorage::AddField(int, int, const std::string&)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1/cache.cpp:787:24: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 787 | if( m_types.size() <= field_no ) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -14312,36 +14344,33 @@ /bin/ln -f .blastdb.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.blastdb.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastdb' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1/cache.cpp: In member function 'void ncbi::objects::CDomainStorage::AddField(int, int, const std::string&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1/cache.cpp:787:24: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 787 | if( m_types.size() <= field_no ) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genomecoll' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o -/bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libgenome_collection.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libgenome_collection.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libgenome_collection.so -/bin/ln -f .genome_collection.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.genome_collection.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genomecoll' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/variation/variation__.cpp -o variation__.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/variation/variation___.cpp -o variation___.o +/bin/rm -f libvariation.so .libvariation.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libvariation.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC variation__.o variation___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseq -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libvariation.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libvariation.so +/bin/ln -f .variation.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.variation.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1/cache.cpp -o cache.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1/utils.cpp -o utils.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o -/bin/rm -f libtaxon1.so .libtaxon1make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqset' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqset' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o @@ -14351,24 +14380,38 @@ /bin/ln -f libseqset.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libseqset.so /bin/ln -f .seqset.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.seqset.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqset' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.somake[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqset' -cd objects/scoremat/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null -cd objects/seqedit/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null -cd objects/seqsplit/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null -cd objects/submit/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null -cd objects/id1/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null -: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqset' +cd objects/scoremat/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seqedit/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seqsplit/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null +cd objects/submit/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/scoremat' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqedit' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqsplit' +cd objects/id1/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/submit' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1/cache.cpp -o cache.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1/utils.cpp -o utils.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o +/bin/rm -f libtaxon1.so .libtaxon1/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/submit' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/scoremat' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqsplit' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqedit' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' +.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libtaxon1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libtaxon1.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libtaxon1.so +/bin/ln -f .taxon1.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.taxon1.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -14387,45 +14430,22 @@ /bin/ln -f .taxon3.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.taxon3.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon3' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon3' -.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libtaxon1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libtaxon1.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libtaxon1.so -/bin/ln -f .taxon1.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.taxon1.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/variation/variation__.cpp -o variation__.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/variation/variation___.cpp -o variation___.o -/bin/rm -f libvariation.so .libvariation.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libvariation.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC variation__.o variation___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseq -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libvariation.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libvariation.so -/bin/ln -f .variation.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.variation.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/id1/id1__.cpp -o id1__.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/id1/id1___.cpp -o id1___.o -/bin/rm -f libid1.so .libid1.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libid1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC id1__.o id1___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libid1.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libid1.so -/bin/ln -f .id1.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.id1.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genomecoll' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o +/bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libgenome_collection.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libgenome_collection.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libgenome_collection.so +/bin/ln -f .genome_collection.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.genome_collection.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genomecoll' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genomecoll' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -14442,7 +14462,7 @@ /bin/ln -f .submit.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.submit.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/submit' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/submit' -cd objtools/readers/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/readers/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/readers' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/readers' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/reader_message.cpp -o reader_message.o @@ -14466,7 +14486,31 @@ /bin/ln -f .scoremat.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.scoremat.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/scoremat' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/scoremat' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(CNcbiIstream&, EAgpRead_IdRule, bool, std::vector >*)': +cd objects/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/id1/id1__.cpp -o id1__.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/id1/id1___.cpp -o id1___.o +/bin/rm -f libid1.so .libid1.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libid1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC id1__.o id1___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libid1.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libid1.so +/bin/ln -f .id1.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.id1.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' +cbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/seqid_validate.cpp -o seqid_validate.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_read.cpp -o agp_read.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_util.cpp -o agp_util.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFIL/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(CNcbiIstream&, EAgpRead_IdRule, bool, std::vector >*)': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_read.cpp:58:12: warning: 'void ncbi::AgpRead(CNcbiIstream&, std::vector >&, EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] 58 | AgpRead(is, entries, component_id_rule, set_gap_data, component_types); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -14481,22 +14525,10 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here 52 | void AgpRead(CNcbiIstream& is, | ^~~~~~~ -cbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/seqid_validate.cpp -o seqid_validate.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_read.cpp -o agp_read.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_util.cpp -o agp_util.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILcd objects/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_util.cpp: In member function 'int ncbi::CAgpErrEx::GetCount(ncbi::CAgpErr::EErrCode) const': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_util.cpp:1709:14: warning: comparison between 'enum ncbi::CAgpErr::EErrCode' and 'enum ncbi::CAgpErrEx::' [-Wenum-compare] 1709 | if (code < CODE_Last) { | ~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp: In member function 'virtual void ncbi::CAgpValidateReader::OnObjectChange()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp:585:28: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - 585 | catch(CException e){ - | ^ /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -14513,7 +14545,17 @@ /bin/ln -f .seqedit.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.seqedit.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqedit' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqedit' -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp: In member function 'virtual void ncbi::CAgpValidateReader::OnObjectChange()': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp:585:28: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + 585 | catch(CException e){ + | ^ +E64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/cigar.cpp -o cigar.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/fasta.cpp -o fasta.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/alnread.cpp -o alnread.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DN/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -14529,20 +14571,25 @@ /bin/ln -f .seqsplit.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.seqsplit.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqsplit' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqsplit' -cd objmgr/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null +cd objmgr/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr' -cd objects/id2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null +cd objects/id2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' -cd sra/readers/sra/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=sraread UNIX_PROJ="" sources= configurables=configurables.null +cd sra/readers/sra/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=sraread UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/sra' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/table_field.cpp -o table_field.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o -/usr/bmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/sra' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_util.cpp: In function 'void ncbi::objects::AlnUtil::CheckId(const std::string&, const std::vector&, int, int, bool)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_util.cpp:56:28: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 56 | if ((orderedIds.size() > idCount) && + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner.cpp: In member function 'virtual void ncbi::objects::CAlnScanner::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner.cpp:92:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 92 | for (auto i=0; i < mSequences.size(); ++i) { + | ~~^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner.cpp: In member function 'bool ncbi::objects::CAlnScanner::xSeqIdIsEqualToInfoAt(const std::string&, int)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner.cpp:233:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 233 | if (index >= mSeqIds.size()) { + | ~~~~~~^~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/sra' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_SRAREAD_EXPORTS /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/sra/readers/sra/sraread.cpp -o sraread.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_SRAREAD_EXPORTS /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/sra/readers/sra/vdbread.cpp -o vdbread.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_SRAREAD_EXPORTS /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/sra/readers/sra/kdbread.cpp -o kdbread.o @@ -14553,30 +14600,10 @@ /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/id2/id2__.cpp -o id2__.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/id2/id2___.cpp -o id2___.o -/bin/rm -f libid2.so .libid2.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libid2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC id2__.o id2___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libid2.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libid2.so -/bin/ln -f .id2.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.id2.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' -cd objtools/pubseq_gateway/client/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=psg_client UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -E64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/cigar.cpp -o cigar.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/fasta.cpp -o fasta.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/alnread.cpp -o alnread.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DN/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp: In member function 'void ncbi::objects::CAlnScannerClustal::sProcessClustalDataLine(const std::vector >&, int, int, int, bool, int&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:296:27: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] + 296 | if (currentLineLength != blockLineLength) { + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/blast/blast___.cpp -o blast___.o @@ -14588,21 +14615,39 @@ /bin/ln -f .xnetblast.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xnetblast.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' - -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_SRAREAD_EXPORTS /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/sra/readers/sra/wgsresolver.cpp -o wgsresolver.o +cd objects/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/id2/id2__.cpp -o id2__.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objects/id2/id2___.cpp -o id2___.o +/bin/rm -f libid2.so .libid2.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libid2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC id2__.o id2___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libid2.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libid2.so +/bin/ln -f .id2.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.id2.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' +DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_util.cpp -o aln_util.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-p -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_SRAREAD_EXPORTS /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/sra/readers/sra/wgsresolver.cpp -o wgsresolver.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_SRAREAD_EXPORTS /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/sra/readers/sra/wgsresolver_impl.cpp -o wgsresolver_impl.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_SRAREAD_EXPORTS /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/sra/readers/sra/wgsread.cpp -o wgsread.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_SRAREAD_EXPORTS /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/sra/readers/sra/graphread.cpp -o graphread.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/bui/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_util.cpp: In function 'void ncbi::objects::AlnUtil::CheckId(const std::string&, const std::vector&, int, int, bool)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_util.cpp:56:28: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 56 | if ((orderedIds.size() > idCount) && - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ -cd objects/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ="" sources= configurables=configurables.null +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/buicd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/vdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=vdb2blast UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/vdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=vdb2blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/vdb' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb/error_priv.c: In function 'VDBSRC_FormatErrorMsg': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb/error_priv.c:202:14: warning: unused variable 'rc' [-Wunused-variable] @@ -14612,20 +14657,14 @@ /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb/common_priv.c -o common_priv.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb/error_priv.c -o error_priv.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb/seqsrc_vdb.c -o seqsrc_vdb.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+din/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/annot_selector.cpp -o annot_selector.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/feat_ci.cpp -o feat_ci.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/graph_ci.cpp -o graph_ci.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -sp/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner.cpp: In member function 'virtual void ncbi::objects::CAlnScanner::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner.cpp:92:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 92 | for (auto i=0; i < mSequences.size(); ++i) { - | ~~^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner.cpp: In member function 'bool ncbi::objects::CAlnScanner::xSeqIdIsEqualToInfoAt(const std::string&, int)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner.cpp:233:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 233 | if (index >= mSeqIds.size()) { - | ~~~~~~^~~~~~~~~~~~~~~~~ +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+d/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:129:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 129 | if (dataLineCount < mSequenceCount) { // in first block + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:210:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 210 | if (mSequenceCount != mSeqIds.size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -14643,15 +14682,16 @@ /bin/ln -f .xnetblastcli.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xnetblastcli.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' -DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_util.cpp -o aln_util.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-pcd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb/vdb_priv.c: In function 'VDBSRC_InitData': +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/table_field.cpp -o table_field.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o +/usr/b/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb/vdb_priv.c: In function 'VDBSRC_InitData': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb/vdb_priv.c:224:16: warning: variable 'final_sz' set but not used [-Wunused-but-set-variable] 224 | size_t final_sz; | ^~~~~~~~ @@ -14662,26 +14702,23 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb/vdb_priv.c:525:26: warning: variable 't_seqLength' set but not used [-Wunused-but-set-variable] 525 | uint64_t t_seqLength = 0; | ^~~~~~~~~~~ -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libuv.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libnghttp2.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/pubseq_gateway/client/psg_client.cpp -o psg_client.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o -/bin/rm -f libpsg_client.so .libpsg_client.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libpsg_client.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC psg_client.o psg_client_transport.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxconnserv -lxxconnect2 -luv -lnghttp2 -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libpsg_client.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libpsg_client.so -/bin/ln -f .psg_client.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.psg_client.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -cd objtools/blast/services/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp: In member function 'virtual void ncbi::objects::CAlnScannerSequin::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:75:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 75 | if (lineInBlock != mSeqIds.size()) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:156:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 156 | if (lineInBlock >= mSeqIds.size()) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:186:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 186 | for (auto i = 0; i < seqData.size(); ++i) { + | ~~^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp: In static member function 'static bool ncbi::objects::CAlnScannerSequin::xExtractSequinSequenceData(const std::string&, std::string&, std::string&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:259:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 259 | for (auto curBlock = 3; curBlock < tokens.size() - 1; ++curBlock) { + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:264:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 264 | for (auto curBlock = 1; curBlock < tokens.size(); ++curBlock) { + | ~~~~~~~~~^~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o @@ -14692,18 +14729,15 @@ /bin/ln -f .seqalign_util.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.seqalign_util.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp: In member function 'void ncbi::objects::CAlnScannerClustal::sProcessClustalDataLine(const std::vector >&, int, int, int, bool, int&)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:296:27: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] - 296 | if (currentLineLength != blockLineLength) { - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:129:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 129 | if (dataLineCount < mSequenceCount) { // in first block - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:210:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 210 | if (mSequenceCount != mSeqIds.size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +cd objtools/blast/services/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp: In member function 'virtual void ncbi::objects::CAlnScannerMultAlign::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:125:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 125 | if (lineInBlock != expectedNumSequences) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:135:48: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 135 | if (!inFirstBlock && lineInBlock == expectedNumSequences) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o @@ -14718,23 +14752,34 @@ /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb/vdb_priv.c -o vdb_priv.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb/vdbsequtil.c -o vdbsequtil.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb/vdbalias.cpp -o vdbalias.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp: In member function 'virtual void ncbi::objects::CAlnScannerSequin::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:75:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 75 | if (lineInBlock != mSeqIds.size()) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:156:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 156 | if (lineInBlock >= mSeqIds.size()) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:186:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 186 | for (auto i = 0; i < seqData.size(); ++i) { - | ~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp: In static member function 'static bool ncbi::objects::CAlnScannerSequin::xExtractSequinSequenceData(const std::string&, std::string&, std::string&)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:259:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 259 | for (auto curBlock = 3; curBlock < tokens.size() - 1; ++curBlock) { - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:264:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 264 | for (auto curBlock = 1; curBlock < tokens.size(); ++curBlock) { - | ~~~~~~~~~^~~~~~~~~~~~~~~ +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE cd objtools/pubseq_gateway/client/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=psg_client UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +rotector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp -o aln_scanner_phylip.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp -o aln_scanner_sequin.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp -o aln_scanner_multalign.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o +/usr/bin/g++ -std=gnu++20 -c -W/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.cpp: In function 'ncbi::CRef ncbi::ExtractPssmAncillaryData(const objects::CPssmWithParameters&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.cpp:803:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 803 | true)); + | ^ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o +/bin/rm -f libblast_services.so .libblast_services.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libblast_services.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blast_services.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libblast_services.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libblast_services.so +/bin/ln -f .blast_services.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.blast_services.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libncbi-vdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libmbedtls.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libmbedx509.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -14749,13 +14794,6 @@ /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp: In member function 'virtual void ncbi::objects::CAlnScannerMultAlign::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:125:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 125 | if (lineInBlock != expectedNumSequences) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:135:48: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 135 | if (!inFirstBlock && lineInBlock == expectedNumSequences) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ ld/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_SRAREAD_EXPORTS /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/sra/readers/sra/snpread.cpp -o snpread.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_SRAREAD_EXPORTS /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/sra/readers/sra/vdbcache.cpp -o vdbcache.o /bin/rm -f libsraread.a .libsraread.a.stamp @@ -14771,39 +14809,12 @@ /bin/ln -f .sraread.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.sraread.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/sra' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/sra' -ecs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/annot_object.cpp -o annot_object.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/annot_ci.cpp -o annot_ci.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/tse_info.cpp -o tse_info.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o -/bin/rm -f libblast_services.so .libblast_services.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libblast_services.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blast_services.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libblast_services.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libblast_services.so -/bin/ln -f .blast_services.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.blast_services.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' -rotector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp -o aln_scanner_phylip.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp -o aln_scanner_sequin.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp -o aln_scanner_multalign.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o -/usr/bin/g++ -std=gnu++20 -c -W/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.cpp: In function 'ncbi::CRef ncbi::ExtractPssmAncillaryData(const objects::CPssmWithParameters&)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.cpp:803:66: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 803 | true)); - | ^ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +all -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/getfeature.cpp -o getfeature.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/track_data.cpp -o track_data.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/reader_data.cpp -o reader_data.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/phrap.cpp -o phrap.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtoolmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o @@ -14812,13 +14823,13 @@ /bin/ln -f .blast_app_util.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.blast_app_util.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' --mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/data_source.cpp -o data_source.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/priority.cpp -o priority.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOU-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb/vdbblast_local.cpp -o vdbblast_local.o +in/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/annot_selector.cpp -o annot_selector.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/feat_ci.cpp -o feat_ci.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/graph_ci.cpp -o graph_ci.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -sp-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb/vdbblast_local.cpp -o vdbblast_local.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb/blastn_vdb_args.cpp -o blastn_vdb_args.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/vdb/tblastn_vdb_args.cpp -o tblastn_vdb_args.o /bin/rm -f libvdb2blast.a .libvdb2blast.a.stamp @@ -14828,25 +14839,7 @@ /bin/ln -f .vdb2blast.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.vdb2blast.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/vdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/vdb' -RCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/scope.cpp -o scope.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/heap_scope.cpp -o heap_scope.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/scope_impl.cpp -o scope_impl.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reprodall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/getfeature.cpp -o getfeature.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/track_data.cpp -o track_data.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/reader_data.cpp -o reader_data.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/phrap.cpp -o phrap.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtoolucible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/scope_info.cpp -o scope_info.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/tse_handle.cpp -o tse_handle.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_map.cpp -o seq_map.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o -/usr/bi/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/readfeat.cpp: In member function 'bool ncbi::objects::CFeatureTableReader_Imp::x_AddQualifierToCdregion(ncbi::CRef, ncbi::objects::CSeqFeatData&, EQual, const std::string&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/readfeat.cpp: In member function 'bool ncbi::objects::CFeatureTableReader_Imp::x_AddQualifierToCdregion(ncbi::CRef, ncbi::objects::CSeqFeatData&, EQual, const std::string&)': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/readfeat.cpp:1283:26: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] 1283 | } catch( CStringException ) { | ^~~~~~~~~~~~~~~~ @@ -14856,33 +14849,19 @@ /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-localn/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/align_ci.cpp -o align_ci.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/data_loader.cpp -o data_loader.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-pat-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gff3_location_merger.cpp -o gff3_location_merger.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-localecs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/annot_object.cpp -o annot_object.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/annot_ci.cpp -o annot_ci.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/tse_info.cpp -o tse_info.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 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-D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gff3_location_merger.cpp -o gff3_location_merger.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gtf_location_merger.cpp -o gtf_location_merger.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-pa/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gff2_data.cpp: In function 'ncbi::CRef ncbi::objects::s_GetCodeBreakSeqLocMix(const std::string&, const CSeq_id&, ENa_strand)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gff2_data.cpp:91:21: warning: loop variable 'token' creates a copy from type 'const std::__cxx11::basic_string' [-Wrange-loop-construct] - 91 | for (const auto token : tokens) { - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gff2_data.cpp:91:21: note: use reference type to prevent copying - 91 | for (const auto token : tokens) { - | ^~~~~ - | & -h/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/handle_range.cpp -o handle_range.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/object_manager.cpp -o object_manager.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_vector.cpp -o seq_vector.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-pro/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const': +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-pa/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gff2_reader.cpp:835:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] 835 | for (auto i=0; i ncbi::objects::s_GetCodeBreakSeqLocMix(const std::string&, const CSeq_id&, ENa_strand)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gff2_data.cpp:91:21: warning: loop variable 'token' creates a copy from type 'const std::__cxx11::basic_string' [-Wrange-loop-construct] + 91 | for (const auto token : tokens) { + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/gff2_data.cpp:91:21: note: use reference type to prevent copying + 91 | for (const auto token : tokens) { + | ^~~~~ + | & +-mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/data_source.cpp -o data_source.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/priority.cpp -o priority.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOU/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libuv.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libnghttp2.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/pubseq_gateway/client/psg_client.cpp -o psg_client.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o +/bin/rm -f libpsg_client.so .libpsg_client.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libpsg_client.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC psg_client.o psg_client_transport.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxconnserv -lxxconnect2 -luv -lnghttp2 +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libpsg_client.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libpsg_client.so +/bin/ln -f .psg_client.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.psg_client.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +RCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/scope.cpp -o scope.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/heap_scope.cpp -o heap_scope.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/scope_impl.cpp -o scope_impl.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reprod/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/psl_data.cpp: In member function 'void ncbi::objects::CPslData::Initialize(const ncbi::objects::CReaderBase::TReaderLine&)': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/psl_data.cpp:144:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 144 | if (mBlockCount != mBlockSizes.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ @@ -14904,26 +14921,27 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/psl_data.cpp:156:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 156 | if (mBlockCount != mBlockStartsT.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -th/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/psl_data.cpp -o psl_data.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/bed_reader.cpp:484:35: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 484 | if (blockSizes.size() != blockCount) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/bed_reader.cpp:505:36: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 505 | if (blockStarts.size() != blockCount) { | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -tection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSE/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/source_mod_parser.cpp: In function 'void ncbi::objects::s_GetPrimerInfo(const CSourceModParser::SMod*, const CSourceModParser::SMod*, std::vector, std::__cxx11::basic_string > >&)': +th/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/psl_data.cpp -o psl_data.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_ucible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/scope_info.cpp -o scope_info.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/tse_handle.cpp -o tse_handle.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_map.cpp -o seq_map.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o +/usr/bi/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/source_mod_parser.cpp: In function 'void ncbi::objects::s_GetPrimerInfo(const CSourceModParser::SMod*, const CSourceModParser::SMod*, std::vector, std::__cxx11::basic_string > >&)': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/readers/source_mod_parser.cpp:877:20: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] 877 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 2439 | if (offset > 0 && offset < m_MainTitle.length()) { - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp -o wgsmaster.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/wgs' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/nmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/wgs' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_XLOADER_WGS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/sra/data_loaders/wgs/wgsloader.cpp -o wgsloader.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_XLOADER_WGS_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/sra/data_loaders/wgs/wgsloader_impl.cpp -o wgsloader_impl.o /bin/rm -f libncbi_xloader_wgs.a .libncbi_xloader_wgs.a.stamp @@ -15132,17 +15154,31 @@ /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/indexer.cpp -o indexer.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/create_defline.cpp -o create_defline.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wnmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wn/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: In static member function 'static char* ncbi::CSeqDBAtlas::Alloc(size_t, bool)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:256:16: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=] + 256 | catch(std::bad_alloc) { + | ^~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function 'void ncbi::SeqDB_ReadMemoryTaxIdList(const char*, const char*, CSeqDBGiList::STaxIdsOids&)': +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/create_defline.cpp:2439:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 2439 | if (offset > 0 && offset < m_MainTitle.length()) { + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function 'void ncbi::SeqDB_ReadMemoryTaxIdList(const char*, const char*, CSeqDBGiList::STaxIdsOids&)': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1094:52: warning: comparison of integer expressions of different signedness: 'Int4' {aka 'int'} and 'unsigned int' [-Wsign-compare] 1094 | if (((bendp - bbeginp) < 2) || (bbeginp[0] != 0xFFFFFFFF) | ~~~~~~~~~~~^~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/csra' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp -o wgsmaster.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/csra' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_XLOADER_CSRA_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/sra/data_loaders/csra/csraloader.cpp -o csraloader.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_XLOADER_CSRA_EXPORTS -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/sra/data_loaders/csra/csraloader_impl.cpp -o csraloader_impl.o /bin/rm -f libncbi_xloader_csra.a .libncbi_xloader_csra.a.stamp @@ -15187,19 +15223,13 @@ /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/split/size.cpp -o size.o -/usr/bi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi--I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/bo-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/objutil.cpp -o objutil.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -15213,37 +15243,43 @@ /bin/ln -f .id2_split.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.id2_split.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/split' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/split' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const std::string&, std::vector >&, std::vector >&, std::vector&)': +i-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi--I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const std::string&, std::vector >&, std::vector >&, std::vector&)': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] 972 | int found_short(-1); | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp: In constructor 'ncbi::CSeqDBNodeFileIdList::CSeqDBNodeFileIdList(ncbi::CSeqDBAtlas&, const ncbi::CSeqDB_Path&, ncbi::CSeqDBGiListSet::EGiListType, ncbi::CSeqDBLockHold&)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:130:13: warning: unused variable 'vector_size' [-Wunused-variable] - 130 | int vector_size = - | ^~~~~~~~~~~ -o-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/objutil.cpp -o objutil.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specsDNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o +DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp: In constructor 'ncbi::CSeqDBNodeFileIdList::CSeqDBNodeFileIdList(ncbi::CSeqDBAtlas&, const ncbi::CSeqDB_Path&, ncbi::CSeqDBGiListSet::EGiListType, ncbi::CSeqDBLockHold&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:130:13: warning: unused variable 'vector_size' [-Wunused-variable] + 130 | int vector_size = + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp: In member function 'void ncbi::CSeqDBLMDB::GetOidsForTaxIds(const std::set&, std::vector&, std::vector&) const': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:655:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 655 | for (int i=0; i < oids_set.size(); i++) { + | ~~^~~~~~~~~~~~~~~~~ +=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/autodef.cpp -o autodef.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-comp/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp: In member function 'void ncbi::CSeqDBLMDB::GetOidsForTaxIds(const std::set&, std::vector&, std::vector&) const': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp:655:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 655 | for (int i=0; i < oids_set.size(); i++) { - | ~~^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp: In member function 'bool ncbi::objects::CAutoDefModifierCombo::AddQual(bool, int, bool)': +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-comp/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp: In member function 'bool ncbi::objects::CAutoDefModifierCombo::AddQual(bool, int, bool)': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable 'added' [-Wunused-variable] 1033 | bool added = false, rval = false; | ^~~~~ @@ -15267,11 +15303,11 @@ /bin/ln -f .seqdb.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.seqdb.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -cd objtools/data_loaders/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/blast/seqdb_writer/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/blast/services/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +cd objtools/data_loaders/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/seqdb_writer/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/services/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libz.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -15288,13 +15324,7 @@ /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANTblast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o +blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o info_cache.o @@ -15308,12 +15338,24 @@ /bin/ln -f .ncbi_xreader.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.ncbi_xreader.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANTcd objtools/data_loaders/genbank/cache/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +cd objtools/data_loaders/genbank/id1/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +cd objtools/data_loaders/genbank/id2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' ile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o @@ -15324,18 +15366,12 @@ /bin/ln -f .xobjutil.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xobjutil.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/util' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/util' -cd objtools/data_loaders/genbank/cache/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -cd objtools/data_loaders/genbank/id1/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' - -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security cd objtools/data_loaders/genbank/id2/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +cd objtools/seqmasks_io/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/seqmasks_io' +cd algo/blast/dbindex/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' +cd objtools/alnmgr/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/alnmgr' /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/liblmdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -15343,6 +15379,13 @@ /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 52 | objects::CFastaReader::fAllSeqIds; + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/readers/fasta.hpp:93:9: note: declared here + 93 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o @@ -15354,21 +15397,6 @@ /bin/ln -f .ncbi_xloader_blastdb.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.ncbi_xloader_blastdb.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -cd objtools/blast/blastdb_format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -cd objtools/data_loaders/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp: In member function 'void ncbi::CWriteDB_LMDB::x_CommitTransaction()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:295:55: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] - 295 | unsigned int num_threads = GetCpuCount(); - | ~~~~~~~~~~~^~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:35: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbi_system.hpp:445:14: note: declared here - 445 | unsigned int GetCpuCount(void) - | ^~~~~~~~~~~ -cd objtools/edit/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=edit UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/edit' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_services_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o /usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blast_services_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o blast_services_unit_test @@ -15376,45 +15404,14 @@ /bin/ln -f blast_services_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blast_services_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 49 | CSeqFormatterConfig config /* = CSeqFormatterConfig() */) - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 270 | void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ +cd objtools/blast/blastdb_format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +cd objtools/data_loaders/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] + 306 | unsigned long tmp; + | ^~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -15422,29 +15419,6 @@ /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o -/bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp -ar cr libncbi_xreader_id1.a reader_id1.o -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libncbi_xreader_id1.a -/bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libncbi_xreader_id1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_id1.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lzcf -lm -lpthread || (echo "project_tree_builder's suggestions failed. Trying original settings:"; echo /usr/bin/g++ -std=gnu++20 -shared -o libncbi_xreader_id1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_id1.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lncbi_xreader -lxobjmgr -lid1 -lseq -lgeneral -lxser -lxconnect -lxutil -lxncbi -lm -lpthread ; /usr/bin/g++ -std=gnu++20 -shared -o libncbi_xreader_id1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_id1.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lncbi_xreader -lxobjmgr -lid1 -lseq -lgeneral -lxser -lxconnect -lxutil -lxncbi -lm -lpthread ) -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader_id1.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libncbi_xreader_id1.so -/bin/ln -f .ncbi_xreader_id1-static.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.ncbi_xreader_id1-static.dep -/bin/ln -f .ncbi_xreader_id1.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.ncbi_xreader_id1.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_demo.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o seqdb_demo -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f seqdb_demo /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/seqdb_demo -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=tax4blast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -15452,6 +15426,14 @@ /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(TSeqData&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:47: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] + 658 | string idstr = objects::sequence::GetTitle( bsh ); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objmgr/util/sequence.hpp:290:8: note: declared here + 290 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); + | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp @@ -15466,33 +15448,27 @@ /bin/ln -f .ncbi_xreader_id2.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.ncbi_xreader_id2.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. --mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o -/bin/rm -f libwritedb.so .libwritedb.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libwritedb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libwritedb.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libwritedb.so -/bin/ln -f .writedb.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.writedb.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/edit' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/promote.cpp -o promote.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/field_handler.cpp -o field_handler.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/apply_object.cpp /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o +/bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp +ar cr libncbi_xreader_id1.a reader_id1.o +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libncbi_xreader_id1.a +/bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libncbi_xreader_id1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_id1.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lzcf -lm -lpthread || (echo "project_tree_builder's suggestions failed. Trying original settings:"; echo /usr/bin/g++ -std=gnu++20 -shared -o libncbi_xreader_id1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_id1.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lncbi_xreader -lxobjmgr -lid1 -lseq -lgeneral -lxser -lxconnect -lxutil -lxncbi -lm -lpthread ; /usr/bin/g++ -std=gnu++20 -shared -o libncbi_xreader_id1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_id1.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lncbi_xreader -lxobjmgr -lid1 -lseq -lgeneral -lxser -lxconnect -lxutil -lxncbi -lm -lpthread ) +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f .ncbi_xreader_id1-static.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.ncbi_xreader_id1-static.dep +/bin/ln -f libncbi_xreader_id1.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libncbi_xreader_id1.so +/bin/ln -f .ncbi_xreader_id1.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.ncbi_xreader_id1.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/seqmasks_io' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/rep/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -15505,69 +15481,63 @@ /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libncbi_xreader_cache.a /bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp /usr/bin/g++ -std=gnu++20 -shared -o libncbi_xreader_cache.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_cache.o writer_cache.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lzcf -lm -lpthread || (echo "project_tree_builder's suggestions failed. Trying original settings:"; echo /usr/bin/g++ -std=gnu++20 -shared -o libncbi_xreader_cache.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_cache.o writer_cache.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lncbi_xreader -lxobjmgr -lseq -lxser -lxncbi -lm -lpthread ; /usr/bin/g++ -std=gnu++20 -shared -o libncbi_xreader_cache.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_cache.o writer_cache.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lncbi_xreader -lxobjmgr -lseq -lxser -lxncbi -lm -lpthread ) +/bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libncbi_xreader_cache.a /bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libncbi_xreader_cache.so /bin/ln -f .ncbi_xreader_cache-static.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.ncbi_xreader_cache-static.dep /bin/ln -f .ncbi_xreader_cache.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.ncbi_xreader_cache.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'void CSeqDBPerfApp::x_UpdateMemoryUsage(int)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:23: warning: 'bool ncbi::GetMemoryUsage(size_t*, size_t*, size_t*)' is deprecated [-Wdeprecated-declarations] - 114 | if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:36: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbi_system.hpp:477:13: note: declared here - 477 | extern bool GetMemoryUsage(size_t* total, size_t* resident, size_t* shared); - | ^~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'int CSeqDBPerfApp::x_ScanDatabase()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:154:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 154 | for (ssize_t i = 0; i < oids2iterate.size(); i++) { - | ~~^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, TRnaMap*) const': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/promote.cpp:224:51: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] - 224 | CCdregion_translate::TranslateCdregion(data, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ - 225 | feat, - | ~~~~~ - 226 | x_Scope(), - | ~~~~~~~~~~ - 227 | include_stop, - | ~~~~~~~~~~~~~ - 228 | remove_trailingX); - | ~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/promote.cpp:52: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objmgr/util/sequence.hpp:966:17: note: declared here - 966 | static void TranslateCdregion(string& prot, - | ^~~~~~~~~~~~~~~~~ -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o -/bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xloader_blastdb_rmt.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so -/bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -cd objtools/seqmasks_io/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=tax4blast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/demo/tax4blast.cpp -o tax4blast.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie tax4blast.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqdb -lsqlitewrapp -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lsqlite3 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o tax4blast -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tax4blast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f tax4blast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/tax4blast -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)': +cd objtools/edit/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=edit UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/edit' +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 49 | CSeqFormatterConfig config /* = CSeqFormatterConfig() */) + | ^ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 270 | void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) + | ^ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' + -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1850:71: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1850 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { | ~~~~~~^~~~~~~~~~~~~~ @@ -15595,10 +15565,75 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2876:39: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] 2876 | if (pos >= start && pos < start + len) { | ~~~~^~~~~~~~~~~~~ -cd algo/blast/dbindex/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' -cd objtools/alnmgr/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/alnmgr' +cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=tax4blast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o +/bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xloader_blastdb_rmt.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so +/bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' +/usr/bin/g++ -std=gnu++20 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o +/usr/bin/g++ -std=gnu++20 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o +/usr/bin/g++ -std=gnu++20 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o +/usr/bin/g++ -std=gnu++20 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o +/usr/bin/g++ -std=gnu++20 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o +/bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libxalgoblastdbindex.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +ds/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libxalgoblastdbindex.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxalgoblastdbindex.so +/bin/ln -f .xalgoblastdbindex.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xalgoblastdbindex.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' +cd objtools/data_loaders/genbank/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'void CSeqDBPerfApp::x_UpdateMemoryUsage(int)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:23: warning: 'bool ncbi::GetMemoryUsage(size_t*, size_t*, size_t*)' is deprecated [-Wdeprecated-declarations] + 114 | if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:36: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbi_system.hpp:477:13: note: declared here + 477 | extern bool GetMemoryUsage(size_t* total, size_t* resident, size_t* shared); + | ^~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'int CSeqDBPerfApp::x_ScanDatabase()': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:154:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 154 | for (ssize_t i = 0; i < oids2iterate.size(); i++) { + | ~~^~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_demo.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o seqdb_demo +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f seqdb_demo /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/seqdb_demo +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +cd algo/blast/dbindex/makeindex/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=tax4blast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/demo/tax4blast.cpp -o tax4blast.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie tax4blast.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqdb -lsqlitewrapp -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lsqlite3 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o tax4blast +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tax4blast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f tax4blast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/tax4blast +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_perf.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o seqdb_perf @@ -15606,27 +15641,6 @@ /bin/ln -f seqdb_perf /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/seqdb_perf make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -cd objtools/data_loaders/genbank/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:92:48: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] - 92 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objects/general/Dbtag_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objects/general/Dbtag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:31: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:5470:11: note: declared here - 5470 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, - | ^~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:171:44: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] - 171 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:5470:11: note: declared here - 5470 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, - | ^~~~ /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -15645,116 +15659,101 @@ /bin/ln -f .blastdb_format.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.blastdb_format.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 52 | objects::CFastaReader::fAllSeqIds; - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/readers/fasta.hpp:93:9: note: declared here - 93 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/edit/struc_comm_field.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/struc_comm_field.cpp:47: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/edit/field_handler.hpp:65:28: warning: 'virtual std::vector > ncbi::objects::edit::CFieldHandler::IsValid(const std::vector >&)' was hidden [-Woverloaded-virtual=] - 65 | virtual vector IsValid(const vector& /*values*/) { return vector(); } - | ^~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/edit/struc_comm_field.hpp:89:17: note: by 'static bool ncbi::objects::edit::CStructuredCommentField::IsValid(const ncbi::objects::CUser_object&, const std::string&)' - 89 | static bool IsValid(const CUser_object& obj, const string& desired_prefix); - | ^~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/edit/field_handler.hpp:64:20: warning: 'virtual std::string ncbi::objects::edit::CFieldHandler::IsValid(const std::string&)' was hidden [-Woverloaded-virtual=] - 64 | virtual string IsValid(const string& /*value*/) { return string(); } - | ^~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/edit/struc_comm_field.hpp:89:17: note: by 'static bool ncbi::objects::edit::CStructuredCommentField::IsValid(const ncbi::objects::CUser_object&, const std::string&)' - 89 | static bool IsValid(const CUser_object& obj, const string& desired_prefix); - | ^~~~~~~ -cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=seqdb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] - 306 | unsigned long tmp; - | ^~~ -cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=seqdb_tax4blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/seqmasks_io' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/rep/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(TSeqData&)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:47: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] - 658 | string idstr = objects::sequence::GetTitle( bsh ); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objmgr/util/sequence.hpp:290:8: note: declared here - 290 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); - | ^~~~~~~~ -cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' --o apply_object.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wncd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/alnmgr' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alndi/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/liblmdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +roducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o +/bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libseqmasks_io.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -lsqlite3 -llmdb -lpthread -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libseqmasks_io.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libseqmasks_io.so +/bin/ln -f .seqmasks_io.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.seqmasks_io.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/edit' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/promote.cpp -o promote.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/field_handler.cpp -o field_handler.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/apply_object.cpp /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, TRnaMap*) const': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/promote.cpp:224:51: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] + 224 | CCdregion_translate::TranslateCdregion(data, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ + 225 | feat, + | ~~~~~ + 226 | x_Scope(), + | ~~~~~~~~~~ + 227 | include_stop, + | ~~~~~~~~~~~~~ + 228 | remove_trailingX); + | ~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/promote.cpp:52: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objmgr/util/sequence.hpp:966:17: note: declared here + 966 | static void TranslateCdregion(string& prot, + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp: In member function 'void ncbi::CWriteDB_LMDB::x_CommitTransaction()': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:295:55: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] + 295 | unsigned int num_threads = GetCpuCount(); + | ~~~~~~~~~~~^~ +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:35: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbi_system.hpp:445:14: note: declared here + 445 | unsigned int GetCpuCount(void) + | ^~~~~~~~~~~ +cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' -/usr/bin/g++ -std=gnu++20 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o -/usr/bin/g++ -std=gnu++20 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o -/usr/bin/g++ -std=gnu++20 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o -/usr/bin/g++ -std=gnu++20 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o -/usr/bin/g++ -std=gnu++20 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o -/bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libxalgoblastdbindex.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_tax4blast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_tax4blast_unit_test.cpp -o seqdb_tax4blast_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_tax4blast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lsqlitewrapp -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -lsqlite3 -llmdb -lpthread -lm -lpthread -o seqdb_tax4blast_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_tax4blast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f seqdb_tax4blast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/seqdb_tax4blast_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +cd algo/winmask/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/winmask' +In file included from /usr/include/c++/15/vector:68, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:36: +In member function 'constexpr std::vector<_Tp, _Alloc>::const_reference std::vector<_Tp, _Alloc>::operator[](size_type) const [with _Tp = int; _Alloc = std::allocator]', + inlined from 'ncbi::objects::CAlnMap::TSegTypeFlags ncbi::objects::CAlnMap::x_SetRawSegType(TNumrow, TNumseg) const' at /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:152:45: +/usr/include/c++/15/bits/stl_vector.h:1283:41: warning: 'l_anchor_index' may be used uninitialized [-Wmaybe-uninitialized] + 1283 | return *(this->_M_impl._M_start + __n); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::objects::CAlnMap::TSegTypeFlags ncbi::objects::CAlnMap::x_SetRawSegType(TNumrow, TNumseg) const': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:129:19: note: 'l_anchor_index' was declared here + 129 | TNumseg l_anchor_index, r_anchor_index, anchor_index; + | ^~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie main.o mkindex_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o makembindex +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f makembindex /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/makembindex +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -ds/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libxalgoblastdbindex.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxalgoblastdbindex.so -/bin/ln -f .xalgoblastdbindex.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xalgoblastdbindex.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp -o seqdb_lmdb_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_lmdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lm -lpthread -o seqdb_lmdb_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/seqdb_lmdb_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=writedb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/cds_fix.cpp:457:57: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] - 457 | any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here - 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/cds_fix.cpp:463:39: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] - 463 | AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here - 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); @@ -15780,6 +15779,18 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ +-mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o +/bin/rm -f libwritedb.so .libwritedb.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libwritedb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libwritedb.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libwritedb.so +/bin/ln -f .writedb.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.writedb.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestNoFormatSpecifier::test_method()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:54:41: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] @@ -15919,72 +15930,13 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter | ^~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/alnmgr' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alndi/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/liblmdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -roducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o -/bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libseqmasks_io.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -lsqlite3 -llmdb -lpthread -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libseqmasks_io.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libseqmasks_io.so -/bin/ln -f .seqmasks_io.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.seqmasks_io.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp -o writedb_lmdb_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie writedb_lmdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o writedb_lmdb_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/writedb_lmdb_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -cd algo/blast/dbindex/makeindex/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -cd algo/winmask/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/winmask' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp -o seq_formatter_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seq_writer_unit_test.o seq_formatter_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lm -lpthread -o blastdb_format_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastdb_format_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -In file included from /usr/include/c++/15/vector:68, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:36: -In member function 'constexpr std::vector<_Tp, _Alloc>::const_reference std::vector<_Tp, _Alloc>::operator[](size_type) const [with _Tp = int; _Alloc = std::allocator]', - inlined from 'ncbi::objects::CAlnMap::TSegTypeFlags ncbi::objects::CAlnMap::x_SetRawSegType(TNumrow, TNumseg) const' at /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:152:45: -/usr/include/c++/15/bits/stl_vector.h:1283:41: warning: 'l_anchor_index' may be used uninitialized [-Wmaybe-uninitialized] - 1283 | return *(this->_M_impl._M_start + __n); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::objects::CAlnMap::TSegTypeFlags ncbi::objects::CAlnMap::x_SetRawSegType(TNumrow, TNumseg) const': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:129:19: note: 'l_anchor_index' was declared here - 129 | TNumseg l_anchor_index, r_anchor_index, anchor_index; - | ^~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/winmask' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncb/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 76 | match1->m_ChainScore == match2->m_ChainScore && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ @@ -16006,62 +15958,49 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 199 | strand2 != eNa_strand_minus)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/mail_report.cpp -o mail_report.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -smake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie main.o mkindex_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o makembindex -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f makembindex /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/makembindex -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const std::string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp:259:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 259 | for (int j = i + 1; j < spans.size(); j++) - | ~~^~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/winmask' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbIn file included from /usr/include/c++/15/bits/stl_iterator.h:78, - from /usr/include/c++/15/bits/stl_algobase.h:67, - from /usr/include/c++/15/algorithm:62, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistl.hpp:180, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp:32: -In function 'constexpr _Tp* std::construct_at(_Tp*, _Args&& ...) [with _Tp = int; _Args = {const int&}]', - inlined from 'static constexpr void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = int; _Args = {const int&}; _Tp = int]' at /usr/include/c++/15/bits/alloc_traits.h:676:21, - inlined from 'constexpr void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {const int&}; _Tp = int; _Alloc = std::allocator]' at /usr/include/c++/15/bits/vector.tcc:586:26, - inlined from 'constexpr void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = int; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_vector.h:1427:21, - inlined from 'void ncbi::objects::edit::CFindITSParser::GetSpan(const std::string&, std::vector&, std::vector&, std::vector&)' at /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp:221:21: -/usr/include/c++/15/bits/stl_construct.h:110:16: warning: 'start' may be used uninitialized [-Wmaybe-uninitialized] - 110 | return ::new(__loc) _Tp(std::forward<_Args>(__args)...); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp: In member function 'void ncbi::objects::edit::CFindITSParser::GetSpan(const std::string&, std::vector&, std::vector&, std::vector&)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp:211:9: note: 'start' was declared here - 211 | int start, stop; - | ^~~~~ -In function 'constexpr _Tp* std::construct_at(_Tp*, _Args&& ...) [with _Tp = int; _Args = {const int&}]', - inlined from 'static constexpr void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = int; _Args = {const int&}; _Tp = int]' at /usr/include/c++/15/bits/alloc_traits.h:676:21, - inlined from 'constexpr void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {const int&}; _Tp = int; _Alloc = std::allocator]' at /usr/include/c++/15/bits/vector.tcc:586:26, - inlined from 'constexpr void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = int; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_vector.h:1427:21, - inlined from 'void ncbi::objects::edit::CFindITSParser::GetSpan(const std::string&, std::vector&, std::vector&, std::vector&)' at /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp:222:20: -/usr/include/c++/15/bits/stl_construct.h:110:16: warning: 'stop' may be used uninitialized [-Wmaybe-uninitialized] - 110 | return ::new(__loc) _Tp(std::forward<_Args>(__args)...); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp: In member function 'void ncbi::objects::edit::CFindITSParser::GetSpan(const std::string&, std::vector&, std::vector&, std::vector&)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp:211:16: note: 'stop' was declared here - 211 | int start, stop; - | ^~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:92:48: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] + 92 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objects/general/Dbtag_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objects/general/Dbtag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:31: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:5470:11: note: declared here + 5470 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, + | ^~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:171:44: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] + 171 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:5470:11: note: declared here + 5470 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, + | ^~~~ +cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=seqdb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+dscd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=seqdb_tax4blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=writedb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp -o seq_formatter_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seq_writer_unit_test.o seq_formatter_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lm -lpthread -o blastdb_format_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastdb_format_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp:691:40: warning: 'second_row_fits' may be used uninitialized [-Wmaybe-uninitialized] 691 | second_row_fits != eIgnoreMatch) { @@ -16076,27 +16015,86 @@ /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/buil/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const std::string&, const std::string&, ncbi::SIZE_TYPE, bool, bool)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/parse_text_options.cpp:47:25: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] - 47 | pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/edit/parse_text_options.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/parse_text_options.cpp:33: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:5470:11: note: declared here - 5470 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, - | ^~~~ -pecs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/source_edit.cpp -o source_edit.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/eutils_updater.cpp -o eutils_updater.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fs/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/builmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_tax4blast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_tax4blast_unit_test.cpp -o seqdb_tax4blast_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_tax4blast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lsqlitewrapp -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -lsqlite3 -llmdb -lpthread -lm -lpthread -o seqdb_tax4blast_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_tax4blast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f seqdb_tax4blast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/seqdb_tax4blast_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +i-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/incIn file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/edit/struc_comm_field.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/struc_comm_field.cpp:47: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/edit/field_handler.hpp:64:20: warning: 'virtual std::string ncbi::objects::edit::CFieldHandler::IsValid(const std::string&)' was hidden [-Woverloaded-virtual=] + 64 | virtual string IsValid(const string& /*value*/) { return string(); } + | ^~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/edit/struc_comm_field.hpp:89:17: note: by 'static bool ncbi::objects::edit::CStructuredCommentField::IsValid(const ncbi::objects::CUser_object&, const std::string&)' + 89 | static bool IsValid(const CUser_object& obj, const string& desired_prefix); + | ^~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/edit/field_handler.hpp:65:28: warning: 'virtual std::vector > ncbi::objects::edit::CFieldHandler::IsValid(const std::vector >&)' was hidden [-Woverloaded-virtual=] + 65 | virtual vector IsValid(const vector& /*values*/) { return vector(); } + | ^~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/edit/struc_comm_field.hpp:89:17: note: by 'static bool ncbi::objects::edit::CStructuredCommentField::IsValid(const ncbi::objects::CUser_object&, const std::string&)' + 89 | static bool IsValid(const CUser_object& obj, const string& desired_prefix); + | ^~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 311 | if (plus && prev_start_plus_len < start || | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/psg_evloop.cpp -o psg_evloop.o +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp -o seqdb_lmdb_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_lmdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lm -lpthread -o seqdb_lmdb_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/seqdb_lmdb_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp -o writedb_lmdb_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie writedb_lmdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o writedb_lmdb_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/writedb_lmdb_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +-o apply_object.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wn/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, EAlgorithm)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 136 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, EAlgorithm)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 300 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/cds_fix.cpp:457:57: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] + 457 | any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here + 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/cds_fix.cpp:463:39: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] + 463 | AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here + 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +lude /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/psg_evloop.cpp -o psg_evloop.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/psg_processor.cpp -o psg_processor.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/psg_blob_processor.cpp -o psg_blob_processor.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/data_loaders/genbank/psg_processors.cpp -o psg_processors.o @@ -16117,7 +16115,13 @@ /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -ast+-2.17.0+ds/c++/BUILD/lib/libncbi_xloader_genbank.a +d/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-prast+-2.17.0+ds/c++/BUILD/lib/libncbi_xloader_genbank.a /bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp /usr/bin/g++ -std=gnu++20 -shared -o libncbi_xloader_genbank.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o psg_evloop.o psg_processor.o psg_blob_processor.o psg_processors.o psg_cache.o psg_cdd.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader -lid2 -lpsg_client -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxconnserv -lxcompress -lxser -lxthrserv -lxxconnect2 -lsequtil -lxconnect -lxutil -lxncbi -lzcf -luv -lnghttp2 -lz -lbz2 -lzstd -lm -lpthread || (echo "project_tree_builder's suggestions failed. Trying original settings:"; echo /usr/bin/g++ -std=gnu++20 -shared -o libncbi_xloader_genbank.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o psg_evloop.o psg_processor.o psg_blob_processor.o psg_processors.o psg_cache.o psg_cdd.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lid2 -lid1 -lncbi_xreader -lpsg_client -lxconnserv -lxxconnect2 -lxobjmgr -lseq -lxutil -lxncbi -luv -lnghttp2 -lz -lbz2 -lzstd -lm -lpthread ; /usr/bin/g++ -std=gnu++20 -shared -o libncbi_xloader_genbank.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o psg_evloop.o psg_processor.o psg_blob_processor.o psg_processors.o psg_cache.o psg_cdd.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lid2 -lid1 -lncbi_xreader -lpsg_client -lxconnserv -lxxconnect2 -lxobjmgr -lseq -lxutil -lxncbi -luv -lnghttp2 -lz -lbz2 -lzstd -lm -lpthread ) /bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib @@ -16125,34 +16129,66 @@ /bin/ln -f .ncbi_xloader_genbank-static.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.ncbi_xloader_genbank-static.dep /bin/ln -f .ncbi_xloader_genbank.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.ncbi_xloader_genbank.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -cd objtools/simple/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null +o-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/mail_report.cpp -o mail_report.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -smake[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const std::string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp:259:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 259 | for (int j = i + 1; j < spans.size(); j++) + | ~~^~~~~~~~~~~~~~ +In file included from /usr/include/c++/15/bits/stl_iterator.h:78, + from /usr/include/c++/15/bits/stl_algobase.h:67, + from /usr/include/c++/15/algorithm:62, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistl.hpp:180, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp:32: +In function 'constexpr _Tp* std::construct_at(_Tp*, _Args&& ...) [with _Tp = int; _Args = {const int&}]', + inlined from 'static constexpr void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = int; _Args = {const int&}; _Tp = int]' at /usr/include/c++/15/bits/alloc_traits.h:676:21, + inlined from 'constexpr void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {const int&}; _Tp = int; _Alloc = std::allocator]' at /usr/include/c++/15/bits/vector.tcc:586:26, + inlined from 'constexpr void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = int; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_vector.h:1427:21, + inlined from 'void ncbi::objects::edit::CFindITSParser::GetSpan(const std::string&, std::vector&, std::vector&, std::vector&)' at /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp:221:21: +/usr/include/c++/15/bits/stl_construct.h:110:16: warning: 'start' may be used uninitialized [-Wmaybe-uninitialized] + 110 | return ::new(__loc) _Tp(std::forward<_Args>(__args)...); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp: In member function 'void ncbi::objects::edit::CFindITSParser::GetSpan(const std::string&, std::vector&, std::vector&, std::vector&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp:211:9: note: 'start' was declared here + 211 | int start, stop; + | ^~~~~ +In function 'constexpr _Tp* std::construct_at(_Tp*, _Args&& ...) [with _Tp = int; _Args = {const int&}]', + inlined from 'static constexpr void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = int; _Args = {const int&}; _Tp = int]' at /usr/include/c++/15/bits/alloc_traits.h:676:21, + inlined from 'constexpr void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {const int&}; _Tp = int; _Alloc = std::allocator]' at /usr/include/c++/15/bits/vector.tcc:586:26, + inlined from 'constexpr void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = int; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_vector.h:1427:21, + inlined from 'void ncbi::objects::edit::CFindITSParser::GetSpan(const std::string&, std::vector&, std::vector&, std::vector&)' at /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp:222:20: +/usr/include/c++/15/bits/stl_construct.h:110:16: warning: 'stop' may be used uninitialized [-Wmaybe-uninitialized] + 110 | return ::new(__loc) _Tp(std::forward<_Args>(__args)...); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp: In member function 'void ncbi::objects::edit::CFindITSParser::GetSpan(const std::string&, std::vector&, std::vector&, std::vector&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp:211:16: note: 'stop' was declared here + 211 | int start, stop; + | ^~~~ +cd objtools/simple/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/simple' -cd app/dustmasker/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/dustmasker/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/dustmasker' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o writedb_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f writedb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/writedb_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, EAlgorithm)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 136 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, EAlgorithm)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 300 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -d/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-pr/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:34: +In member function 'ncbi::CAlignRangeCollExtender::position_type ncbi::CAlignRangeCollExtender::GetSecondFrom() const [with TColl = ncbi::CAlignRangeCollectionList >]', + inlined from 'ncbi::CRange ncbi::CAlignRangeCollExtender::GetSecondRange() const [with TColl = ncbi::CAlignRangeCollectionList >]' at /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/align_range_coll.hpp:1897:16, + inlined from 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)' at /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:230:49: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/align_range_coll.hpp:1876:16: warning: '*(__vector(2) int*)((char*)&ext + offsetof(ncbi::CAlignRangeCollExtender > >,ncbi::CAlignRangeCollExtender > >::m_From))' may be used uninitialized [-Wmaybe-uninitialized] + 1876 | return m_From; + | ^~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:228:46: note: 'ext' declared here + 228 | CAlignRangeCollExtender ext(*m_Aln->GetPairwiseAlns()[row]); + | ^~~ +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -16167,29 +16203,29 @@ /bin/ln -f .xobjsimple.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xobjsimple.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/simple' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/simple' -i-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/incmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lm -lpthread -o seqdb_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/seqdb_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: 'std::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const std::string&)' defined but not used [-Wunused-function] - 336 | static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) - | ^~~~~~~~~~~~~~~~~~~~~~~~ -lude /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/dustmasker' +blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/b/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const std::string&, const std::string&, ncbi::SIZE_TYPE, bool, bool)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/parse_text_options.cpp:47:25: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] + 47 | pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/edit/parse_text_options.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/parse_text_options.cpp:33: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:5470:11: note: declared here + 5470 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, + | ^~~~ +pecs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/source_edit.cpp -o source_edit.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/eutils_updater.cpp -o eutils_updater.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fsmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/dustmasker' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=dustmasker /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/dustmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=dustmasker /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie main.o dust_mask_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o dustmasker @@ -16197,32 +16233,15 @@ /bin/ln -f dustmasker /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/dustmasker make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/dustmasker' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/dustmasker' -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:34: -In member function 'ncbi::CAlignRangeCollExtender::position_type ncbi::CAlignRangeCollExtender::GetSecondFrom() const [with TColl = ncbi::CAlignRangeCollectionList >]', - inlined from 'ncbi::CRange ncbi::CAlignRangeCollExtender::GetSecondRange() const [with TColl = ncbi::CAlignRangeCollectionList >]' at /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/align_range_coll.hpp:1897:16, - inlined from 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)' at /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:230:49: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/util/align_range_coll.hpp:1876:16: warning: '*(__vector(2) int*)((char*)&ext + offsetof(ncbi::CAlignRangeCollExtender > >,ncbi::CAlignRangeCollExtender > >::m_From))' may be used uninitialized [-Wmaybe-uninitialized] - 1876 | return m_From; - | ^~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:228:46: note: 'ext' declared here - 228 | CAlignRangeCollExtender ext(*m_Aln->GetPairwiseAlns()[row]); - | ^~~ -blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/btack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/external_annots.cpp -o external_annots.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/feature_propagate.cpp -o feature_propagate.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/pub_fix.cpp -o pub_fix.o -/bin/rm -f libxobjedit.so .libxobjedit.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libxobjedit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC gene_utils.o /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o writedb_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f writedb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/writedb_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -16234,21 +16253,7 @@ /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o eutils_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o pub_fix.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxobjutil -ltaxon3 -lvalid -lxlogging -leutils -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libxobjedit.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxobjedit.so -/bin/ln -f .xobjedit.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xobjedit.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/edit' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/edit' -cd objtools/cleanup/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/cleanup' -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -otector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc otector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o @@ -16260,7 +16265,7 @@ /bin/ln -f .xalnmgr.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xalnmgr.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/alnmgr' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/alnmgr' -cd objtools/align_format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/align_format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/winmask/win_mask_util.cpp:130:39: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] @@ -16270,43 +16275,34 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objmgr/util/sequence.hpp:290:8: note: declared here 290 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/cleanup' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup.cpp:3000:68: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 3000 | if (abs((long int)this_start - (long int)prev_end) < min_len) { - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/align_format/align_format_util.cpp: In static member function 'static void ncbi::align_format::CAlignFormatUtil::AddSpace(ncbi::CNcbiOstream&, size_t)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/align_format/align_format_util.cpp:935:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 935 | for(auto i=0; i >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 398 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:404:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 404 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:410:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 410 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:416:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 416 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: 'std::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const std::string&)' defined but not used [-Wunused-function] + 336 | static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) + | ^~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/align_format/showalign.cpp -o showalign.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/align_format/tabular.cpp -o tabular.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reprod/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/align_format/showalign.cpp: In member function 'void ncbi::align_format::CDisplaySeqalign::DisplaySeqalign(ncbi::CNcbiOstream&)': +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reprodmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lm -lpthread -o seqdb_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/seqdb_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/align_format/align_format_util.cpp: In static member function 'static void ncbi::align_format::CAlignFormatUtil::AddSpace(ncbi::CNcbiOstream&, size_t)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/align_format/align_format_util.cpp:935:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 935 | for(auto i=0; iGetFilterString(); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~^~ @@ -16373,13 +16374,29 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); | ^~~~~~~~~~~~~~~ -4 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup.cpp:3000:68: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 3000 | if (abs((long int)this_start - (long int)prev_end) < min_len) { + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ +ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/liblmdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranchmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/cleanup' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/liblmdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -16397,8 +16414,19 @@ /bin/ln -f .align_format.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.align_format.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format' -cd objtools/align_format/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format/unit_test' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function 'static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:398:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 398 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:404:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 404 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:410:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 410 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:416:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 416 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o @@ -16423,11 +16451,19 @@ /usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here 1223 | empty() const _GLIBCXX_NOEXCEPT | ^~~~~ +cd objtools/align_format/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format/unit_test' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/local_blast.cpp: In member function 'ncbi::CRef ncbi::blast::CLocalBlast::Run()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/local_blast.cpp:207:116: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 207 | CRef tmp_ancillary_data(new CBlastAncillaryData(tmp_pair, tmp_pair, tmp_pair, 0)); | ^ -or-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blasor-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o @@ -16439,35 +16475,17 @@ /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-pathast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/remote_blast.cpp: In member function 'ncbi::CRef ncbi::blast::CRemoteBlast::GetResultSet()': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/remote_blast.cpp:2244:99: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 2244 | (new CBlastAncillaryData(lambdas, Ks, Hs, effective_search_space, m_Task == "psiblast")); + | ^ +ast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/remote_blast.cpp: In member function 'ncbi::CRef ncbi::blast::CRemoteBlast::GetResultSet()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/remote_blast.cpp:2244:99: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 2244 | (new CBlastAncillaryData(lambdas, Ks, Hs, effective_search_space, m_Task == "psiblast")); - | ^ -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libpcre2-8.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -t+-2.17.0+ds/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/influenza_set.cpp -o influenza_set.o -/bin/rm -f libxcleanup.so .libxcleanup.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libxcleanup.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o influenza_set.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxobjutil -lvalid -lxregexp -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lpcre2-8 -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libxcleanup.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxcleanup.so -/bin/ln -f .xcleanup.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xcleanup.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/cleanup' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/cleanup' -cd objtools/format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/format' -2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o @@ -16496,13 +16514,7 @@ /bin/ln -f align_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/align_format_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/format' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/accession_item.cpp -o accession_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/comment_item.cpp -o comment_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/contig_item.cpp -o contig_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/date_item.cpp -o date_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/dbsds/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o +ds/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o @@ -16518,66 +16530,57 @@ /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I//build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/feature_item.cpp: In function 'const std::string& ncbi::objects::s_AaName(int)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/feature_item.cpp:2135:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] - 2135 | if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { - | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ -ource_item.cpp -o dbsource_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/defline_item.cpp -o defline_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/feature_item.cpp -o feature_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/genome_item.cpp -o genome_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/locus_item.cpp -o locus_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-ybuild/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_O/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/primary_item.cpp:300:63: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] - 300 | if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/primary_item.cpp:301:28: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 301 | if (this_start < (15 + last_stop) ) { - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/primary_item.cpp -o primary_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/reference_item.cpp -o reference_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/segment_item.cpp -o segment_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/source_item.cpp -o source_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/version_item.cpp -o version_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/FFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/source_item.cpp:346:21: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CBioSource_Base::TGenome' {aka 'int'} and 'const unsigned int' [-Wsign-compare] - 346 | if ( genome >= s_organelle_prefix_size ) { - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/context.cpp -o context.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/gather_items.cpp -o gather_items.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-p/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/qualifiers.cpp: In member function 'virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/qualifiers.cpp:1105:10: warning: unused variable 'bHtml' [-Wunused-variable] - 1105 | bool bHtml = ctx.Config().DoHTML(); - | ^~~~~ -rotection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/magicblast.cpp: In member function 'int ncbi::blast::CMagicBlast::x_Run()': +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libpcre2-8.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +t+-2.17.0+ds/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/cleanup/influenza_set.cpp -o influenza_set.o +/bin/rm -f libxcleanup.so .libxcleanup.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libxcleanup.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o influenza_set.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxobjutil -lvalid -lxregexp -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lpcre2-8 +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libxcleanup.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxcleanup.so +/bin/ln -f .xcleanup.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xcleanup.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/cleanup' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/cleanup' +cd objtools/format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/format' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/format' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/accession_item.cpp -o accession_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/comment_item.cpp -o comment_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/contig_item.cpp -o contig_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/date_item.cpp -o date_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/dbs/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/magicblast.cpp: In member function 'int ncbi::blast::CMagicBlast::x_Run()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/magicblast.cpp:148:65: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 148 | tmp_pair, 0)); | ^ +ource_item.cpp -o dbsource_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/defline_item.cpp -o defline_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/feature_item.cpp -o feature_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/genome_item.cpp -o genome_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/locus_item.cpp -o locus_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/feature_item.cpp: In function 'const std::string& ncbi::objects::s_AaName(int)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/feature_item.cpp:2135:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] + 2135 | if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { + | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ NCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/api/blast_node.cpp -o blast_node.o @@ -16591,32 +16594,44 @@ /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/gather_items.cpp:967:13: warning: 'bool ncbi::objects::s_NsAreGaps(const CBioseq_Handle&, CBioseqContext&)' defined but not used [-Wunused-function] - 967 | static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) - | ^~~~~~~~~~~ eproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lm -lpthread /bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib /bin/ln -f libxblast.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxblast.so /bin/ln -f .xblast.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xblast.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/api' -cd algo/blast/blastinput/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/blastinput/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput' -cd algo/blast/proteinkmer/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=proteinkmer UNIX_PROJ="" sources= configurables=configurables.null +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/primary_item.cpp:300:63: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] + 300 | if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/primary_item.cpp:301:28: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 301 | if (this_start < (15 + last_stop) ) { + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ +2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/primary_item.cpp -o primary_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/reference_item.cpp -o reference_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/segment_item.cpp -o segment_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/source_item.cpp -o source_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/version_item.cpp -o version_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/cd algo/blast/proteinkmer/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=proteinkmer UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer' - -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/origin_item.cpp -o origin_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducibmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/source_item.cpp:346:21: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CBioSource_Base::TGenome' {aka 'int'} and 'const unsigned int' [-Wsign-compare] + 346 | if ( genome >= s_organelle_prefix_size ) { + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/qualifiers.cpp: In member function 'virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/qualifiers.cpp:1105:10: warning: unused variable 'bHtml' [-Wunused-variable] + 1105 | bool bHtml = ctx.Config().DoHTML(); + | ^~~~~ +ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/context.cpp -o context.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/gather_items.cpp -o gather_items.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-pmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o @@ -16630,35 +16645,26 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:25: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 77 | if (hits.size() < numHashes) | ~~~~~~~~~~~~^~~~~~~~~~~ --DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/flat_file_html.cpp -o flat_file_html.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/gap_item.cpp -o gap_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITSle-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp: In function 'ncbi::CRef s_MakeEmptyResults(ncbi::CRef, const ncbi::blast::CBlastOptions&, ncbi::CRef, ncbi::blast::TSearchMessages&)': +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducib/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/gather_items.cpp:967:13: warning: 'bool ncbi::objects::s_NsAreGaps(const CBioseq_Handle&, CBioseqContext&)' defined but not used [-Wunused-function] + 967 | static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) + | ^~~~~~~~~~~ +rotection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp: In function 'ncbi::CRef s_MakeEmptyResults(ncbi::CRef, const ncbi::blast::CBlastOptions&, ncbi::CRef, ncbi::blast::TSearchMessages&)': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp:132:116: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 132 | CRef tmp_ancillary_data(new CBlastAncillaryData(tmp_pair, tmp_pair, tmp_pair, 0)); | ^ -=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTR_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranc/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/liblmdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/liblmdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -16675,19 +16681,41 @@ /bin/ln -f .proteinkmer.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.proteinkmer.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -cd algo/blast/igblast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null +le-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Dcd algo/blast/igblast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/igblast' -cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=proteinkmer_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null + -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/origin_item.cpp -o origin_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC _LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranccd algo/blast/proteinkmer/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=proteinkmer_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp: In constructor 'ncbi::blast::CIgBlastpAppArgs::CIgBlastpAppArgs()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable 'kFilterByDefault' [-Wunused-variable] 67 | const bool kFilterByDefault = false; | ^~~~~~~~~~~~~~~~ -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +-DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/flat_file_html.cpp -o flat_file_html.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/gap_item.cpp -o gap_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITScd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp: In member function 'virtual void ncbi::blast::CMapperMTArgs::ExtractAlgorithmOptions(const ncbi::CArgs&, ncbi::blast::CBlastOptions&)': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:59: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] @@ -16703,27 +16731,26 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbi_system.hpp:445:14: note: declared here 445 | unsigned int GetCpuCount(void) | ^~~~~~~~~~~ -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/liblmdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/igblast' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o +/bin/rm -f libigblast.so .libigblast.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libigblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC igblast.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libigblast.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libigblast.so +/bin/ln -f .igblast.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.igblast.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/igblast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/igblast' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -ANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o -/bin/rm -f libxformat.so .libxformat.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libxformat.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o flat_file_html.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxcleanup -lvalid -lgbseq -lmedlars -lpubmed -lsubmit -lxalnmgr -lxobjutil -ltaxon3 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libxformat.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxformat.so -/bin/ln -f .xformat.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xformat.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/format' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/format' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp: In member function 'void CompressedAascan::CompressedScanHitsFound::test_method()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:759:10: warning: unused variable 'query_length' [-Wunused-variable] @@ -16732,9 +16759,11 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:760:10: warning: unused variable 'subject_length' [-Wunused-variable] 760 | Int4 subject_length = subject_blk->length; | ^~~~~~~~~~~~~~ -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/liblmdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -16744,6 +16773,22 @@ /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. +=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTR/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function 'void blastengine::testBlastpPrelimSearch::test_method()': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:452:29: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 452 | options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ h-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o @@ -16755,7 +16800,25 @@ /bin/ln -f .blastinput.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.blastinput.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie aalookup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o aalookup_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/aalookup_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp -o proteinkmer_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie proteinkmer_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o proteinkmer_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/proteinkmer_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o @@ -16764,26 +16827,29 @@ /bin/ln -f blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastdiag_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function 'void blastengine::testBlastpPrelimSearch::test_method()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:452:29: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 452 | options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie aalookup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o aalookup_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/aalookup_unit_test +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=aascan_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie aascan_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o aascan_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f aascan_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/aascan_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie gapinfo_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxconnect -lxncbi -lsqlite3 -llmdb -lpthread -lm -lpthread -o gapinfo_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/gapinfo_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::RemoteOptionsTest::test_method()': @@ -16873,43 +16939,29 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie gapinfo_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxconnect -lxncbi -lsqlite3 -llmdb -lpthread -lm -lpthread -o gapinfo_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/gapinfo_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=aascan_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie aascan_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o aascan_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f aascan_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/aascan_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxconnect.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/liblmdb.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/igblast' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o -/bin/rm -f libigblast.so .libigblast.so.stamp -/usr/bin/g++ -std=gnu++20 -shared -o libigblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC igblast.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -/bin/ln -f libigblast.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libigblast.so -/bin/ln -f .igblast.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.igblast.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/igblast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/igblast' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastengine_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o blastengine_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastengine_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +ANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o +/bin/rm -f libxformat.so .libxformat.so.stamp +/usr/bin/g++ -std=gnu++20 -shared -o libxformat.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o flat_file_html.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxcleanup -lvalid -lgbseq -lmedlars -lpubmed -lsubmit -lxalnmgr -lxobjutil -ltaxon3 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib +/bin/ln -f libxformat.so /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib/libxformat.so +/bin/ln -f .xformat.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xformat.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/format' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/format' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastextend_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o /usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastextend_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o blastextend_unit_test @@ -16917,34 +16969,27 @@ /bin/ln -f blastextend_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastextend_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp -o proteinkmer_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie proteinkmer_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o proteinkmer_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/proteinkmer_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o hspfilter_besthit_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/hspfilter_besthit_unit_test +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o gencode_singleton_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/gencode_singleton_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastengine_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o blastengine_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastengine_unit_test +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o hspfilter_besthit_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/hspfilter_besthit_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspfilter_culling_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o @@ -16953,16 +16998,17 @@ /bin/ln -f hspfilter_culling_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/hspfilter_culling_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o gencode_singleton_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/gencode_singleton_unit_test +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o hspstream_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/hspstream_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o @@ -16971,26 +17017,16 @@ /bin/ln -f blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blasthits_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o hspstream_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/hspstream_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastoptions_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o blastoptions_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastoptions_unit_test +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie linkhsp_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o linkhsp_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/linkhsp_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=msa2pssm_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o @@ -16999,11 +17035,13 @@ /bin/ln -f msa2pssm_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/msa2pssm_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie linkhsp_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o linkhsp_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/linkhsp_unit_test +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastoptions_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o blastoptions_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastoptions_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' @@ -17013,16 +17051,7 @@ /bin/ln -f phiblast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/phiblast_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastsetup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o blastsetup_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastsetup_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o @@ -17031,7 +17060,7 @@ /bin/ln -f psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/psiblast_iteration_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o @@ -17040,9 +17069,7 @@ /bin/ln -f prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/prelimsearch_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=rmblast_blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o @@ -17051,7 +17078,23 @@ /bin/ln -f ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/ntlookup_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=rmblast_traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastsetup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o blastsetup_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastsetup_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=rmblast_blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o pssmenginefreqratios_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/pssmenginefreqratios_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=rmblast_traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o @@ -17060,7 +17103,7 @@ /bin/ln -f psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/psibl2seq_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o @@ -17069,7 +17112,18 @@ /bin/ln -f blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastfilter_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie optionshandle_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o optionshandle_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/optionshandle_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o @@ -17078,16 +17132,16 @@ /bin/ln -f ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/ntscan_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie optionshandle_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o optionshandle_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/optionshandle_unit_test +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie queryinfo_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o queryinfo_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/queryinfo_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp -o rmblast_blasthits_unit_test.o @@ -17096,16 +17150,7 @@ /bin/ln -f rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/rmblast_blasthits_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o pssmenginefreqratios_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/pssmenginefreqratios_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=rmblast_traceback_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp -o rmblast_traceback_unit_test.o @@ -17114,36 +17159,25 @@ /bin/ln -f rmblast_traceback_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/rmblast_traceback_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=querydata_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie querydata_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o querydata_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f querydata_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/querydata_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie queryinfo_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o queryinfo_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/queryinfo_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o pssmcreate_unit_test +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o pssmcreate_unit_test /bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin /bin/ln -f pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/pssmcreate_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=querydata_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie querydata_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o querydata_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f querydata_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/querydata_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=rps_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o @@ -17152,7 +17186,7 @@ /bin/ln -f rps_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/rps_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o @@ -17161,7 +17195,9 @@ /bin/ln -f scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/scoreblk_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o @@ -17170,16 +17206,16 @@ /bin/ln -f seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/seqinfosrc_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie setupfactory_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o setupfactory_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/setupfactory_unit_test +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie search_strategy_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o search_strategy_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/search_strategy_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=stat_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp -o stat_unit_test.o @@ -17188,22 +17224,32 @@ /bin/ln -f stat_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/stat_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/segmasker/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/segmasker/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/segmasker' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie setupfactory_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o setupfactory_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/setupfactory_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/format' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o /usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o subj_ranges_unit_test /bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin /bin/ln -f subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/subj_ranges_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/format' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie search_strategy_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o search_strategy_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/search_strategy_unit_test +algoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o seqsrc_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/seqsrc_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' @@ -17214,40 +17260,68 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE 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-lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie tracebacksearch_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o tracebacksearch_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/tracebacksearch_unit_test +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG 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-lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o version_reference_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/version_reference_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/segmasker' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=segmasker /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/segmasker/segmasker.cpp -o segmasker.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread 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-lresolv -lm -lpthread -o segmasker -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f segmasker /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/segmasker -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/segmasker' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/segmasker' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/format' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 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-lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o seqsrc_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/seqsrc_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reprmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/segmasker' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=segmasker /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/segmasker/segmasker.cpp -o segmasker.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie segmasker.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lxobjsimple -lxalgosegmask -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o segmasker +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f segmasker /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/segmasker +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/segmasker' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/segmasker' +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp:37: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:155:38: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] + 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/uniform_search.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:42: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here + 178 | NCBI_DEPRECATED char* GetFilterString() const; + | ^~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/format/blast_format.cpp:49: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:155:38: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] + 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/uniform_search.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/format/blast_format.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/format/blast_format.cpp:37: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here + 178 | NCBI_DEPRECATED char* GetFilterString() const; + | ^~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/format/blast_format.cpp:51: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/format/data4xml2format.hpp:140:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] + 140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here + 178 | NCBI_DEPRECATED char* GetFilterString() const; + | ^~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie convert2blastmask.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o convert2blastmask +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f convert2blastmask /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/convert2blastmask +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie version_reference_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o version_reference_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/version_reference_unit_test +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie tracebacksearch_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o tracebacksearch_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/tracebacksearch_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' @@ -17257,13 +17331,6 @@ /bin/ln -f split_query_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/split_query_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie convert2blastmask.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o convert2blastmask -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f convert2blastmask /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/convert2blastmask -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o /usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie uniform_search_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o uniform_search_unit_test @@ -17289,37 +17356,6 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/format/blast_format.cpp:49: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:155:38: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] - 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp:37: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:155:38: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] - 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/uniform_search.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:42: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here - 178 | NCBI_DEPRECATED char* GetFilterString() const; - | ^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/uniform_search.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/format/blast_format.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/format/blast_format.cpp:37: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here - 178 | NCBI_DEPRECATED char* GetFilterString() const; - | ^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/format/blast_format.cpp:51: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/format/data4xml2format.hpp:140:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] - 140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here - 178 | NCBI_DEPRECATED char* GetFilterString() const; - | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/format/blast_async_format.cpp: In member function 'virtual void* CBlastAsyncFormatThread::Main()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/format/blast_async_format.cpp:122:49: warning: comparison of integer expressions of different signedness: 'std::map >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 122 | if (m_ResultsMap.size() != currNum) @@ -17343,56 +17379,30 @@ /bin/ln -f .xblastformat.dep /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/.xblastformat.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/format' -cd algo/blast/blastinput/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/blastinput/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=magicblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/blast_format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=magicblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/blast_format/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::RangeInvalid_FromGreaterThanTo::test_method()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1977:50: warning: ignoring return value of 'constexpr std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::front() [with _Tp = ncbi::blast::SSeqLoc; _Alloc = std::allocator; reference = ncbi::blast::SSeqLoc&]', declared with attribute 'nodiscard' [-Wunused-result] - 1977 | try { source->GetNextSeqLocBatch(scope).front(); } - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /usr/include/c++/15/vector:68, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objmgr/object_manager.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:34: -/usr/include/c++/15/bits/stl_vector.h:1344:7: note: declared here - 1344 | front() _GLIBCXX_NOEXCEPT - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::RangeInvalid_FromGreaterThanSequenceLength::test_method()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1997:50: warning: ignoring return value of 'constexpr std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::front() [with _Tp = ncbi::blast::SSeqLoc; _Alloc = std::allocator; reference = ncbi::blast::SSeqLoc&]', declared with attribute 'nodiscard' [-Wunused-result] - 1997 | try { source->GetNextSeqLocBatch(scope).front(); } - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -/usr/include/c++/15/bits/stl_vector.h:1344:7: note: declared here - 1344 | front() _GLIBCXX_NOEXCEPT - | ^~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastn_node.cpp:41: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastn_node.cpp: In member function 'virtual void* ncbi::blast::CBlastnNode::Main()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] @@ -17451,13 +17461,32 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastp_node.cpp:198:7: note: in expansion of macro 'CATCH_ALL' 198 | } CATCH_ALL(status) | ^~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o blast_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blast_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::RangeInvalid_FromGreaterThanTo::test_method()': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1977:50: warning: ignoring return value of 'constexpr std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::front() [with _Tp = ncbi::blast::SSeqLoc; _Alloc = std::allocator; reference = ncbi::blast::SSeqLoc&]', declared with attribute 'nodiscard' [-Wunused-result] + 1977 | try { source->GetNextSeqLocBatch(scope).front(); } + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/c++/15/vector:68, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/objmgr/object_manager.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:34: +/usr/include/c++/15/bits/stl_vector.h:1344:7: note: declared here + 1344 | front() _GLIBCXX_NOEXCEPT + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::RangeInvalid_FromGreaterThanSequenceLength::test_method()': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1997:50: warning: ignoring return value of 'constexpr std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::front() [with _Tp = ncbi::blast::SSeqLoc; _Alloc = std::allocator; reference = ncbi::blast::SSeqLoc&]', declared with attribute 'nodiscard' [-Wunused-result] + 1997 | try { source->GetNextSeqLocBatch(scope).front(); } + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +/usr/include/c++/15/bits/stl_vector.h:1344:7: note: declared here + 1344 | front() _GLIBCXX_NOEXCEPT + | ^~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_formatter.cpp:46: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_formatter.cpp: In member function 'virtual int CBlastFormatterApp::Run()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] @@ -17488,14 +17517,12 @@ 568 | } CATCH_ALL(status) | ^~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp -o magicblast_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie magicblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o magicblast_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/magicblast_unit_test +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o blast_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f blast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blast_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I../ -DNCBI_APP_BUILT_AS=bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o /usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie bdbloader_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o bdbloader_unit_test @@ -17503,7 +17530,25 @@ /bin/ln -f bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/bdbloader_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp -o magicblast_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie magicblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o magicblast_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/magicblast_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=delta_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie delta_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o delta_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f delta_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/delta_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o @@ -17512,7 +17557,7 @@ /bin/ln -f redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/redoalignment_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastp_app.cpp: In member function 'virtual int CBlastpApp::Run()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastp_app.cpp:148:50: warning: comparison of integer expressions of different signedness: 'Uint8' {aka 'long unsigned int'} and 'Int8' {aka 'long int'} [-Wsign-compare] @@ -17581,29 +17626,35 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastp_app.cpp:367:11: note: in expansion of macro 'CATCH_ALL' 367 | } CATCH_ALL (status) | ^~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=delta_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie delta_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o delta_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f delta_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/delta_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blast_formatter /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blast_formatter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o blast_formatter -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blast_formatter /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blast_formatter -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie psiblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o psiblast_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/psiblast_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_node.cpp:41: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_node.cpp: In member function 'virtual void* ncbi::blast::CBlastxNode::Main()': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 194 | if (!e.GetMsg().empty()) \ + | ^~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_node.cpp:202:7: note: in expansion of macro 'CATCH_ALL' + 202 | } CATCH_ALL(status) + | ^~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_node.cpp:35: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ + | ^ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' + 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_node.cpp:202:7: note: in expansion of macro 'CATCH_ALL' + 202 | } CATCH_ALL(status) + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastn_app.cpp: In member function 'virtual int CBlastnApp::Run()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastn_app.cpp:148:50: warning: comparison of integer expressions of different signedness: 'Uint8' {aka 'long unsigned int'} and 'Int8' {aka 'long int'} [-Wsign-compare] 148 | if (total_length < max_db_size) { @@ -17671,6 +17722,15 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastn_app.cpp:390:11: note: in expansion of macro 'CATCH_ALL' 390 | } CATCH_ALL (status) | ^~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blast_formatter /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blast_formatter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o blast_formatter +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f blast_formatter /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blast_formatter +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/deltablast_app.cpp:50: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/deltablast_app.cpp: In member function 'virtual int CDeltaBlastApp::Run()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] @@ -17700,13 +17760,13 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/deltablast_app.cpp:454:7: note: in expansion of macro 'CATCH_ALL' 454 | } CATCH_ALL(status) | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_node.cpp:41: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_node.cpp: In member function 'virtual void* ncbi::blast::CBlastxNode::Main()': +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/psiblast_app.cpp:46: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/psiblast_app.cpp: In member function 'virtual int CPsiBlastApp::Run()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 194 | if (!e.GetMsg().empty()) \ | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_node.cpp:202:7: note: in expansion of macro 'CATCH_ALL' - 202 | } CATCH_ALL(status) +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/psiblast_app.cpp:572:7: note: in expansion of macro 'CATCH_ALL' + 572 | } CATCH_ALL(status) | ^~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, @@ -17719,23 +17779,32 @@ from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiargs.hpp:84, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_node.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/psiblast_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ | ^ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_node.cpp:202:7: note: in expansion of macro 'CATCH_ALL' - 202 | } CATCH_ALL(status) +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/psiblast_app.cpp:572:7: note: in expansion of macro 'CATCH_ALL' + 572 | } CATCH_ALL(status) | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/psiblast_app.cpp:46: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/psiblast_app.cpp: In member function 'virtual int CPsiBlastApp::Run()': +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie psiblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o psiblast_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/psiblast_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_node.cpp:42: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_node.cpp: In member function 'virtual void* ncbi::blast::CRPSBlastNode::Main()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 194 | if (!e.GetMsg().empty()) \ | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/psiblast_app.cpp:572:7: note: in expansion of macro 'CATCH_ALL' - 572 | } CATCH_ALL(status) +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_node.cpp:196:7: note: in expansion of macro 'CATCH_ALL' + 196 | } CATCH_ALL(status) | ^~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, @@ -17748,22 +17817,30 @@ from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiargs.hpp:84, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/psiblast_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_node.cpp:35: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ | ^ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/psiblast_app.cpp:572:7: note: in expansion of macro 'CATCH_ALL' - 572 | } CATCH_ALL(status) +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_node.cpp:196:7: note: in expansion of macro 'CATCH_ALL' + 196 | } CATCH_ALL(status) | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_node.cpp:42: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_node.cpp: In member function 'virtual void* ncbi::blast::CRPSBlastNode::Main()': +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastp /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastp_node.cpp -o blastp_node.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastp /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastp_app.cpp -o blastp_app.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastp_node.o blastp_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o blastp +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f blastp /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastp +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_node.cpp:42: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_node.cpp: In member function 'virtual void* ncbi::blast::CRPSTBlastnNode::Main()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 194 | if (!e.GetMsg().empty()) \ | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_node.cpp:196:7: note: in expansion of macro 'CATCH_ALL' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_node.cpp:196:7: note: in expansion of macro 'CATCH_ALL' 196 | } CATCH_ALL(status) | ^~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, @@ -17777,25 +17854,42 @@ from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiargs.hpp:84, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_node.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_node.cpp:35: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ | ^ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_node.cpp:196:7: note: in expansion of macro 'CATCH_ALL' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_node.cpp:196:7: note: in expansion of macro 'CATCH_ALL' 196 | } CATCH_ALL(status) | ^~~~~~~~~ -cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastn_node.cpp -o blastn_node.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastn_app.cpp -o blastn_app.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastn_node.o blastn_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lxformat -lxcleanup -lvalid -lgbseq -lmedlars -lpubmed -lsubmit -lxregexp -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o blastn +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f blastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastn +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp:42: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp: In member function 'int CRPSBlastApp::x_RunMTBySplitDB()': +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=psiblast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie psiblast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o psiblast +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f psiblast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/psiblast +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/seedtop_app.cpp:42: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/seedtop_app.cpp: In member function 'virtual int CSeedTopApp::Run()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 194 | if (!e.GetMsg().empty()) \ | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp:237:7: note: in expansion of macro 'CATCH_ALL' - 237 | } CATCH_ALL(status) +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/seedtop_app.cpp:232:7: note: in expansion of macro 'CATCH_ALL' + 232 | } CATCH_ALL(status) | ^~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, @@ -17808,40 +17902,30 @@ from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiargs.hpp:84, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/seedtop_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ | ^ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp:237:7: note: in expansion of macro 'CATCH_ALL' - 237 | } CATCH_ALL(status) +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/seedtop_app.cpp:232:7: note: in expansion of macro 'CATCH_ALL' + 232 | } CATCH_ALL(status) | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp: In member function 'int CRPSBlastApp::x_RunMTBySplitQuery()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 194 | if (!e.GetMsg().empty()) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp:311:11: note: in expansion of macro 'CATCH_ALL' - 311 | } CATCH_ALL (status) - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' - 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp:311:11: note: in expansion of macro 'CATCH_ALL' - 311 | } CATCH_ALL (status) - | ^~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastp /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastp_node.cpp -o blastp_node.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastp /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastp_app.cpp -o blastp_app.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastp_node.o blastp_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o blastp -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blastp /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastp +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_testsmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=deltablast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie deltablast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o deltablast +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f deltablast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/deltablast make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +cd app/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_app.cpp: In member function 'virtual int CBlastxApp::Run()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_app.cpp:150:50: warning: comparison of integer expressions of different signedness: 'Uint8' {aka 'long unsigned int'} and 'Int8' {aka 'long int'} [-Wsign-compare] 150 | if (total_length < max_db_size) { @@ -17893,57 +17977,6 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_app.cpp:306:7: note: in expansion of macro 'CATCH_ALL' 306 | } CATCH_ALL(status) | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_app.cpp: In member function 'int CBlastxApp::x_RunMTBySplitQuery()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 194 | if (!e.GetMsg().empty()) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_app.cpp:369:11: note: in expansion of macro 'CATCH_ALL' - 369 | } CATCH_ALL (status) - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' - 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_app.cpp:369:11: note: in expansion of macro 'CATCH_ALL' - 369 | } CATCH_ALL (status) - | ^~~~~~~~~ -cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastn_node.cpp -o blastn_node.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastn_app.cpp -o blastn_app.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastn_node.o blastn_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lxformat -lxcleanup -lvalid -lgbseq -lmedlars -lpubmed -lsubmit -lxregexp -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o blastn -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastn -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_testscd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=deltablast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie deltablast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o deltablast -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f deltablast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/deltablast -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=psiblast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie psiblast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o psiblast -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f psiblast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/psiblast -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_app.cpp:42: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_app.cpp: In member function 'int CRPSTBlastnApp::x_RunMTBySplitDB()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] @@ -17973,12 +18006,12 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_app.cpp:231:7: note: in expansion of macro 'CATCH_ALL' 231 | } CATCH_ALL(status) | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_app.cpp: In member function 'int CRPSTBlastnApp::x_RunMTBySplitQuery()': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_app.cpp: In member function 'int CBlastxApp::x_RunMTBySplitQuery()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 194 | if (!e.GetMsg().empty()) \ | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_app.cpp:306:11: note: in expansion of macro 'CATCH_ALL' - 306 | } CATCH_ALL (status) +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_app.cpp:369:11: note: in expansion of macro 'CATCH_ALL' + 369 | } CATCH_ALL (status) | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ @@ -17986,55 +18019,32 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_app.cpp:306:11: note: in expansion of macro 'CATCH_ALL' - 306 | } CATCH_ALL (status) +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_app.cpp:369:11: note: in expansion of macro 'CATCH_ALL' + 369 | } CATCH_ALL (status) | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_node.cpp:42: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_node.cpp: In member function 'virtual void* ncbi::blast::CRPSTBlastnNode::Main()': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_app.cpp: In member function 'int CRPSTBlastnApp::x_RunMTBySplitQuery()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 194 | if (!e.GetMsg().empty()) \ | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_node.cpp:196:7: note: in expansion of macro 'CATCH_ALL' - 196 | } CATCH_ALL(status) - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_node.cpp:35: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_app.cpp:306:11: note: in expansion of macro 'CATCH_ALL' + 306 | } CATCH_ALL (status) + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ | ^ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_node.cpp:196:7: note: in expansion of macro 'CATCH_ALL' - 196 | } CATCH_ALL(status) - | ^~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpsblast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpsblast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie rpsblast_node.o rpsblast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o rpsblast -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f rpsblast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/rpsblast -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastdb_convert LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:47: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp: In member function 'virtual int CBlastDBAliasApp::Run()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_app.cpp:306:11: note: in expansion of macro 'CATCH_ALL' + 306 | } CATCH_ALL (status) + | ^~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp:42: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp: In member function 'int CRPSBlastApp::x_RunMTBySplitDB()': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 194 | if (!e.GetMsg().empty()) \ | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:661:7: note: in expansion of macro 'CATCH_ALL' - 661 | } CATCH_ALL(status) +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp:237:7: note: in expansion of macro 'CATCH_ALL' + 237 | } CATCH_ALL(status) | ^~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, @@ -18047,55 +18057,32 @@ from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiargs.hpp:84, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:661:7: note: in expansion of macro 'CATCH_ALL' - 661 | } CATCH_ALL(status) +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp:237:7: note: in expansion of macro 'CATCH_ALL' + 237 | } CATCH_ALL(status) | ^~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastx /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_node.cpp -o blastx_node.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastx /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_app.cpp -o blastx_app.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastx_node.o blastx_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o blastx -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blastx /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastx -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastdb_path LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/seedtop_app.cpp:42: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/seedtop_app.cpp: In member function 'virtual int CSeedTopApp::Run()': +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp: In member function 'int CRPSBlastApp::x_RunMTBySplitQuery()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 194 | if (!e.GetMsg().empty()) \ | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/seedtop_app.cpp:232:7: note: in expansion of macro 'CATCH_ALL' - 232 | } CATCH_ALL(status) - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/seedtop_app.cpp:35: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp:311:11: note: in expansion of macro 'CATCH_ALL' + 311 | } CATCH_ALL (status) + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ | ^ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/seedtop_app.cpp:232:7: note: in expansion of macro 'CATCH_ALL' - 232 | } CATCH_ALL(status) - | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp:311:11: note: in expansion of macro 'CATCH_ALL' + 311 | } CATCH_ALL (status) + | ^~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_node.cpp:42: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_node.cpp: In member function 'virtual void* ncbi::blast::CTblastnNode::Main()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] @@ -18125,6 +18112,15 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_node.cpp:261:7: note: in expansion of macro 'CATCH_ALL' 261 | } CATCH_ALL(status) | ^~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=seedtop /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o +/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seedtop_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o seedtop +/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin +/bin/ln -f seedtop /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/seedtop +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +cd app/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo1045688 APP_PROJ=blastdb_convert LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastx_app.cpp:42: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastx_app.cpp: In member function 'virtual int CTblastxApp::Run()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] @@ -18154,15 +18150,13 @@ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastx_app.cpp:217:7: note: in expansion of macro 'CATCH_ALL' 217 | } CATCH_ALL(status) | ^~~~~~~~~ -cd app/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:49: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_convert.cpp: In member function 'virtual int CBlastdbConvertApp::Run()': +In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:47: +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp: In member function 'virtual int CBlastDBAliasApp::Run()': /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 194 | if (!e.GetMsg().empty()) \ | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:476:7: note: in expansion of macro 'CATCH_ALL' - 476 | } CATCH_ALL(status) +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:661:7: note: in expansion of macro 'CATCH_ALL' + 661 | } CATCH_ALL(status) | ^~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, @@ -18175,5952 +18169,146 @@ from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiargs.hpp:84, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ | ^ /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:476:7: note: in expansion of macro 'CATCH_ALL' - 476 | } CATCH_ALL(status) +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:661:7: note: in expansion of macro 'CATCH_ALL' + 661 | } CATCH_ALL(status) | ^~~~~~~~~ +make[4]: *** [/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.meta_l:337: all.nonusr] Terminated +make[4]: *** [/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.meta_l:337: all.nonusr] Terminated +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Caught signal 15 +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Caught signal 15 +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Caught signal 15 +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Caught signal 15 +make[5]: *** wait: No child processes. Stop. +make[5]: *** Waiting for unfinished jobs.... +make[5]: *** wait: No child processes. Stop. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Caught signal 15 +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Caught signal 15 +make[4]: *** [/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.meta_l:337: all.nonusr] Terminated +make[4]: *** [/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.meta_l:337: all.nonusr] Terminated +make[5]: *** wait: No child processes. Stop. +make[5]: *** Waiting for unfinished jobs.... +make[5]: *** wait: No child processes. Stop. +make[4]: *** wait: No child processes. Stop. +make[4]: *** Waiting for unfinished jobs.... make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie rpstblastn_node.o rpstblastn_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o rpstblastn -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f rpstblastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/rpstblastn -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_app.cpp: In member function 'virtual int CTblastnApp::Run()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_app.cpp:143:50: warning: comparison of integer expressions of different signedness: 'Uint8' {aka 'long unsigned int'} and 'Int8' {aka 'long int'} [-Wsign-compare] - 143 | if (total_length < max_db_size) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_app.cpp:154:50: warning: comparison of integer expressions of different signedness: 'Uint8' {aka 'long unsigned int'} and 'Int8' {aka 'long int'} [-Wsign-compare] - 154 | if (total_length > max_db_size) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_app.cpp:43: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 194 | if (!e.GetMsg().empty()) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_app.cpp:169:11: note: in expansion of macro 'CATCH_ALL' - 169 | } CATCH_ALL(status) - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_app.cpp:35: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' - 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_app.cpp:169:11: note: in expansion of macro 'CATCH_ALL' - 169 | } CATCH_ALL(status) - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_app.cpp: In member function 'int CTblastnApp::x_RunMTBySplitDB()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 194 | if (!e.GetMsg().empty()) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_app.cpp:351:7: note: in expansion of macro 'CATCH_ALL' - 351 | } CATCH_ALL(status) - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' - 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_app.cpp:351:7: note: in expansion of macro 'CATCH_ALL' - 351 | } CATCH_ALL(status) - | ^~~~~~~~~ -cd app/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_app.cpp: In member function 'int CTblastnApp::x_RunMTBySplitQuery()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 194 | if (!e.GetMsg().empty()) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_app.cpp:407:11: note: in expansion of macro 'CATCH_ALL' - 407 | } CATCH_ALL (status) - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' - 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_app.cpp:407:11: note: in expansion of macro 'CATCH_ALL' - 407 | } CATCH_ALL (status) - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:47: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdbcheck.cpp: In member function 'virtual int CBlastDbCheckApplication::Run()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 194 | if (!e.GetMsg().empty()) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:1512:7: note: in expansion of macro 'CATCH_ALL' - 1512 | } CATCH_ALL(status) - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:34: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' - 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:1512:7: note: in expansion of macro 'CATCH_ALL' - 1512 | } CATCH_ALL(status) - | ^~~~~~~~~ +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=tblastx /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o +make[4]: *** wait: No child processes. Stop. +make[5]: *** wait: No child processes. Stop. +make[5]: *** Waiting for unfinished jobs.... +make[5]: *** wait: No child processes. Stop. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=bl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie bl2seq_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o bl2seq_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f bl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f bl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/bl2seq_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' +make[4]: *** wait: No child processes. Stop. +make[4]: *** Waiting for unfinished jobs.... +make[4]: *** wait: No child processes. Stop. +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Caught signal 15 +make[5]: *** wait: No child processes. Stop. +make[5]: *** Waiting for unfinished jobs.... +make[5]: *** wait: No child processes. Stop. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=tblastx /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie tblastx_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o tblastx -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f tblastx /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/tblastx -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=makeclusterdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -/blast_format/blast_format_unit_test.cpp -o blast_format_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o blast_format_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o blast_format_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blast_format_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdb_aliastool.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o blastdb_aliastool -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastdb_aliastool -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -cd app/blastdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=seedtop /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seedtop_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o seedtop -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f seedtop /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/seedtop -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdb_convert.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o blastdb_convert -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blastdb_convert /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastdb_convert -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -cd app/blastvdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blast_formatter_vdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -cd app/blastvdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blast_vdb_cmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_blast_formatter_vdb to make__blastvdb_common per /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/.#lock-map. -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdbcmd.cpp: In member function 'virtual int CBlastDBCmdApp::Run()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:1211:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 1211 | if (!output_prefix.empty() && (output_prefix.back() != CFile::GetPathSeparator())) - | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:1213:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 1213 | CRef m = m_BlastDb->GetDBMetaData(output_prefix); - | ^~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:51: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 194 | if (!e.GetMsg().empty()) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:1238:7: note: in expansion of macro 'CATCH_ALL' - 1238 | } CATCH_ALL(status) - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:36: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' - 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:1238:7: note: in expansion of macro 'CATCH_ALL' - 1238 | } CATCH_ALL(status) - | ^~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_path /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdb_path.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o blastdb_path -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blastdb_path /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastdb_path -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -cd app/blastvdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=blastn_vdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_blastn_vdb to make__blastvdb_common per /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/.#lock-map. -Waiting for /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb/make__blastvdb_common.lockmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpsblast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpsblast /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o +make[4]: *** [/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.meta_l:337: all.nonusr] Terminated +make[5]: *** [/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.rules:103: blastinput_unit_test.o] Terminated +make[3]: *** [Makefile.flat:2989: blastinput_unit_test.exe.real] Error 2 +make[3]: *** [Makefile.flat:2881: blast_format_unit_test.exe.real] Terminated +make[3]: *** [Makefile.flat:3270: rpsblast.exe.real] Terminated +make[3]: *** [Makefile.flat:3276: rpstblastn.exe.real] Error 2 +make[3]: *** [Makefile.flat:3384: tblastn.exe.real] Terminated +make[3]: *** [Makefile.flat:2917: blastdb_aliastool.exe.real] Terminated +make[3]: *** [Makefile.flat:2923: blastdb_convert.exe.real] Terminated +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -ltest_boost -lentrez2cli -lentrez2 -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o blastinput_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastinput_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeclusterdb.cpp: In member function 'void CMakeClusterDBApp::x_BuildDatabase()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeclusterdb.cpp:565:10: warning: unused variable 'success' [-Wunused-variable] - 565 | bool success = m_DB->EndBuild(); - | ^~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeclusterdb.cpp:60: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeclusterdb.cpp: In member function 'virtual int CMakeClusterDBApp::Run()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 194 | if (!e.GetMsg().empty()) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeclusterdb.cpp:603:5: note: in expansion of macro 'CATCH_ALL' - 603 | CATCH_ALL(status) - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/serial/objostrjson.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeclusterdb.cpp:35: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' - 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeclusterdb.cpp:603:5: note: in expansion of macro 'CATCH_ALL' - 603 | CATCH_ALL(status) - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeblastdb.cpp:62: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeblastdb.cpp: In member function 'virtual int CMakeBlastDBApp::Run()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 194 | if (!e.GetMsg().empty()) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeblastdb.cpp:1335:5: note: in expansion of macro 'CATCH_ALL' - 1335 | CATCH_ALL(status) - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/serial/objostrjson.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeblastdb.cpp:36: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' - 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeblastdb.cpp:1335:5: note: in expansion of macro 'CATCH_ALL' - 1335 | CATCH_ALL(status) - | ^~~~~~~~~ -./build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_InitRPSDbInfo(CRPS_DbInfo&, Int4, Int4)': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:750:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 750 | if (!rpsDbInfo.aux_file.is_open()) - | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:753:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 753 | string freq_str = rpsDbInfo.db_name + ".freq"; - | ^~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'int CMakeProfileDBApp::x_Run()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:1365:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 1365 | if (m_NumOfVols == m_VolNames.size()) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Caught signal 15 +make[5]: *** [/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.rules:103: blastdb_aliastool.o] Terminated make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdbcheck.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o blastdbcheck -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blastdbcheck /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastdbcheck -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -cd app/blastvdb/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo3637818 APP_PROJ=tblastn_vdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_tblastn_vdb to make__blastvdb_common per /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/.#lock-map. -Waiting for /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb/make__blastvdb_common.lockmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o +Terminated +make[4]: *** wait: No child processes. Stop. +make[4]: *** Waiting for unfinished jobs.... +make[4]: *** wait: No child processes. Stop. +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Caught signal 15 +make[3]: *** [Makefile.flat:3396: tblastx.exe.real] Error 2 +make[5]: *** [/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.rules:103: vecscreen_run_unit_test.o] Terminated +make[4]: *** [/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.meta_l:337: all.nonusr] Terminated +make[3]: *** [Makefile.flat:3025: blastx.exe.real] Terminated +make[5]: *** [/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.rules:103: blastx_app.o] Terminated +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastx /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_node.cpp -o blastx_node.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastx /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/blastx_app.cpp -o blastx_app.o +/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock: Caught signal 15 +make[5]: *** wait: No child processes. Stop. +make[5]: *** Waiting for unfinished jobs.... +make[5]: *** wait: No child processes. Stop. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o +/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o +make[4]: *** [/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.meta_l:337: all.nonusr] Terminated +make[3]: *** [Makefile.flat:2875: bl2seq_unit_test.exe.real] Terminated +make[5]: *** [/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.rules:103: tblastn_app.o] Terminated +make[5]: *** wait: No child processes. Stop. +make[5]: *** Waiting for unfinished jobs.... +make[5]: *** wait: No child processes. Stop. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=tblastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_node.cpp -o tblastn_node.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=tblastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie tblastn_node.o tblastn_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o tblastn -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f tblastn /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/tblastn -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -..In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/blast_formatter_vdb.cpp:43: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/blast_formatter_vdb.cpp: In member function 'virtual int CBlastFormatterVdbApp::Run()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/../blast/blast_app_util.hpp:194:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 194 | if (!e.GetMsg().empty()) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/blast_formatter_vdb.cpp:417:7: note: in expansion of macro 'CATCH_ALL' - 417 | } CATCH_ALL(status) - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/blast_formatter_vdb.cpp:35: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbidiag.hpp:227:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 227 | ( NCBI_NS_NCBI::CNcbiDiag(DIAG_COMPILE_INFO, \ - | ^ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/../blast/blast_app_util.hpp:196:17: note: in expansion of macro 'LOG_POST' - 196 | LOG_POST(Error << "BLAST Database error: " << err_msg); \ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/blast_formatter_vdb.cpp:417:7: note: in expansion of macro 'CATCH_ALL' - 417 | } CATCH_ALL(status) - | ^~~~~~~~~ -.make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcp /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdbcp.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lxconnext -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o blastdbcp -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blastdbcp /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastdbcp -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -.make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcmd /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdbcmd.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o blastdbcmd -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blastdbcmd /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastdbcmd -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -.make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeprofiledb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie makeprofiledb.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o makeprofiledb -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f makeprofiledb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/makeprofiledb -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -.make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeclusterdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeclusterdb.cpp -o makeclusterdb.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie makeclusterdb.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o makeclusterdb -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeclusterdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f makeclusterdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/makeclusterdb -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeblastdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeblastdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o makeblastdb -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f makeblastdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/makeblastdb -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -I/include -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/internal/blast/vdb -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_APP_BUILT_AS=blast_vdb_cmd /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/blast_vdb_cmd.cpp -o blast_vdb_cmd.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blast_vdb_cmd.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lvdb2blast -lncbi_xloader_csra -lsraread -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lm -lpthread -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lncbi-vdb -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lbz2 -lz -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o blast_vdb_cmd -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_vdb_cmd /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blast_vdb_cmd /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blast_vdb_cmd -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -.make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -I/include -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/internal/blast/vdb -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_APP_BUILT_AS=blast_formatter_vdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/blast_vdb_app_util.cpp -o blast_vdb_app_util.o -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -I/include -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/internal/blast/vdb -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_APP_BUILT_AS=blast_formatter_vdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/blast_formatter_vdb.cpp -o blast_formatter_vdb.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -L/../../../c++/lib -fPIE -pie blast_vdb_app_util.o blast_formatter_vdb.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lncbi_xloader_wgs -lncbi_xloader_csra -lvdb2blast -lsraread -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lm -lpthread -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lncbi-vdb -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lbz2 -lz -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthrea.d -o blast_formatter_vdb -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter_vdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blast_formatter_vdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blast_formatter_vdb -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -. -Acquired /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb/make__blastvdb_common.lock for PID 3884116 (make__blastvdb_common) -./build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/blastn_vdb.cpp: In member function 'void CVDBBlastnApp::x_SetupLocalVDBSearch()': -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/blastn_vdb.cpp:121:26: warning: 'ncbi::CArgs::CArgs(const ncbi::CArgs&)' is deprecated [-Wdeprecated-declarations] - 121 | CArgs args = GetArgs(); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistr.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiapp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/blastn_vdb.cpp:40: -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbiargs.hpp:389:26: note: declared here - 389 | NCBI_DEPRECATED_CTOR(CArgs(const CArgs& other)); - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include/corelib/ncbimisc.hpp:1213:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' - 1213 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED - | ^~~~ -..make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTVDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_APP_BUILT_AS=blastn_vdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/blastn_vdb.cpp -o blastn_vdb.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blast_vdb_app_util.o blastn_vdb.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lncbi_xloader_wgs -lncbi_xloader_csra -lvdb2blast -lsraread -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lm -lpthread -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lncbi-vdb -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lbz2 -lz -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o blastn_vdb -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn_vdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f blastn_vdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/blastn_vdb -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -. -Acquired /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb/make__blastvdb_common.lock for PID 3885169 (make__blastvdb_common) -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -/usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.17.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIE -DNCBI_MODULE=BLASTVDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -DNCBI_APP_BUILT_AS=tblastn_vdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastvdb/tblastn_vdb.cpp -o tblastn_vdb.o -/usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blast_vdb_app_util.o tblastn_vdb.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/lib -lblast_app_util -lncbi_xloader_wgs -lncbi_xloader_csra -lvdb2blast -lsraread -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lxformat -lxcleanup -lgbseq -lxobjedit -lefetch -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lsqlitewrapp -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -lxxconnect2 -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lzcf -lm -lpthread -lsqlite3 -llmdb -lpthread -luv -lnghttp2 -lncbi-vdb -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lbz2 -lz -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lz -lbz2 -lzstd -lm -lpthread -o tblastn_vdb -/bin/bash /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn_vdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin -/bin/ln -f tblastn_vdb /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/tblastn_vdb -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -make[3]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build' -make[2]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build' -make[1]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds' - debian/rules override_dh_auto_build-indep -make[1]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds' -echo "Save time and do nothing for architecture independent builds" -Save time and do nothing for architecture independent builds -make[1]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds' - debian/rules override_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds' -dh_auto_test - cd c\+\+ && /usr/bin/make -j12 check TESTSUITEFLAGS="-j12 --verbose" VERBOSE=1 -make[2]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++' -if test -s ""; then \ - cd /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build && /usr/bin/make -j12 --jobserver-auth=fifo:/tmp/GMfifo3892639 check_p RUN_CHECK=Y; \ -else \ - cd /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build && /usr/bin/make -j12 --jobserver-auth=fifo:/tmp/GMfifo3892639 check_r RUN_CHECK=Y; \ -fi -make[3]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build' -make[3]: warning: -j12 forced in submake: resetting jobserver mode. -====================================================================== -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build' -/usr/bin/make -C corelib --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/corelib' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -/bin/echo 'Warning: non-existent sub-project "jaeger"' -Warning: non-existent sub-project "jaeger" -/bin/echo 'Warning: non-existent sub-project "opentelemetry"' -Warning: non-existent sub-project "opentelemetry" -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/corelib' -/usr/bin/make -C util --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util' -/usr/bin/make -C regexp --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/regexp' -NOTE: Skipping project regexp due to unmet requirements: -LocalPCRE -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/regexp' -make[7]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/regexp TMPL=regexp --jobserver-auth=fifo:/tmp/GMfifo3892683 mark-as-disabled -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/regexp' -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/regexp' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/regexp' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/regexp' -/usr/bin/make -C xregexp --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/xregexp' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/xregexp' -/usr/bin/make -C compress --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress' -/usr/bin/make -C bzip2 --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/bzip2' -NOTE: Skipping project bzip2 due to unmet requirements: -LocalBZ2 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/bzip2' -make[8]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/bzip2 TMPL=bzip2 --jobserver-auth=fifo:/tmp/GMfifo3892746 mark-as-disabled -make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/bzip2' -make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/bzip2' -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/bzip2' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/bzip2' -/usr/bin/make -C zlib --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib' -NOTE: Skipping project zlib due to unmet requirements: -LocalZ -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib' -make[8]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/util/compress/zlib TMPL=zlib --jobserver-auth=fifo:/tmp/GMfifo3892783 mark-as-disabled -make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib' -make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib' -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib' -/usr/bin/make -C zlib_cloudflare --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib_cloudflare' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/zlib_cloudflare' -/usr/bin/make -C api --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/api' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress/api' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/compress' -/bin/echo 'Warning: non-existent sub-project "diff"' -Warning: non-existent sub-project "diff" -/bin/echo 'Warning: non-existent sub-project "image"' -Warning: non-existent sub-project "image" -/usr/bin/make -C tables --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/tables' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/tables' -/usr/bin/make -C sequtil --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/sequtil' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/sequtil' -/usr/bin/make -C bitset --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/bitset' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -/bin/echo 'Warning: non-existent sub-project "demo"' -Warning: non-existent sub-project "demo" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/bitset' -/bin/echo 'Warning: non-existent sub-project "qparse"' -Warning: non-existent sub-project "qparse" -/usr/bin/make -C lmdb --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/lmdb' -NOTE: Skipping project lmdb due to unmet requirements: -LocalLMDB -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/lmdb' -make[7]: warning: -j12 forced in submake: resetting jobserver mode. -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/lmdb' -make[8]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/status/LocalLMDB.enabled', needed by 'requirements'. Stop. -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/lmdb' -NOTE: skipping project "lmdb" due to unmet requirements -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/lmdb' -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/lmdb' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/lmdb' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/lmdb' -/usr/bin/make -C lmdbxx --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/lmdbxx' -SKIP -- util/lmdbxx/lmdbxx_sample -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/lmdbxx' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -/bin/echo 'Warning: non-existent sub-project "demo"' -Warning: non-existent sub-project "demo" -/usr/bin/make -C profile --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/profile' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util/profile' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/util' -/usr/bin/make -C connect --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -/usr/bin/make -C services --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/services' -/usr/bin/make -C ext --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect/ext' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/connect' -/usr/bin/make -C cgi --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/cgi' -/usr/bin/make -C html --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/html' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -/bin/echo 'Warning: non-existent sub-project "demo"' -Warning: non-existent sub-project "demo" -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/html' -/usr/bin/make -C build-system --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/build-system' -/usr/bin/make -C helpers --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/build-system/helpers' -SKIP -- build-system/helpers/run_with_lock -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/build-system/helpers' -/usr/bin/make -C project_tree_builder --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/build-system/project_tree_builder' -SKIP -- build-system/project_tree_builder/project_tree_builder -/usr/bin/make -C msbuild --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -NOTE: Skipping project msbuild due to unmet requirements: -MSWin -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[8]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj --jobserver-auth=fifo:/tmp/GMfifo3892991 mark-as-disabled -make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/build-system/project_tree_builder' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/build-system' -/usr/bin/make -C serial --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' -/usr/bin/make -C datatool --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/datatool' -TEST -- serial/datatool/datatool -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/datatool' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -/bin/echo 'Warning: non-existent sub-project "soap"' -Warning: non-existent sub-project "soap" -/usr/bin/make -C grpc_integration --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/grpc_integration' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial/grpc_integration' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/serial' -/usr/bin/make -C db --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db' -/usr/bin/make -C sqlite --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db/sqlite' -/bin/echo 'Warning: non-existent sub-project "bdb"' -Warning: non-existent sub-project "bdb" -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/db' -/bin/echo 'Warning: non-existent sub-project "dbapi"' -Warning: non-existent sub-project "dbapi" -/usr/bin/make -C objects --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects' -/usr/bin/make -C general --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -/bin/echo 'Warning: non-existent sub-project "unit_test"' -Warning: non-existent sub-project "unit_test" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/general' -/usr/bin/make -C biblio --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/biblio' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/biblio' -/usr/bin/make -C medline --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medline' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medline' -/usr/bin/make -C pub --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pub' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pub' -/usr/bin/make -C seqcode --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqcode' -/usr/bin/make -C seq --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -/bin/echo 'Warning: non-existent sub-project "unit_test"' -Warning: non-existent sub-project "unit_test" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seq' -/usr/bin/make -C seqset --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqset' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqset' -/usr/bin/make -C submit --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/submit' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/submit' -/usr/bin/make -C seqedit --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqedit' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqedit' -/usr/bin/make -C seqsplit --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqsplit' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqsplit' -/usr/bin/make -C id1 --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id1' -/usr/bin/make -C id2 --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/id2' -/usr/bin/make -C entrez2 --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrez2' -/bin/echo 'Warning: non-existent sub-project "demo"' -Warning: non-existent sub-project "demo" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrez2' -/usr/bin/make -C pubmed --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pubmed' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pubmed' -/usr/bin/make -C medlars --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medlars' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/medlars' -/usr/bin/make -C proj --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/proj' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/proj' -/usr/bin/make -C scoremat --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/scoremat' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/scoremat' -/usr/bin/make -C blast --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blast' -/usr/bin/make -C blastdb --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastdb' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastdb' -/usr/bin/make -C blastxml --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml' -/usr/bin/make -C blastxml2 --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml2' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/blastxml2' -/usr/bin/make -C mmdb --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/mmdb' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/mmdb' -/usr/bin/make -C cn3d --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/cn3d' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/cn3d' -/usr/bin/make -C cdd --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/cdd' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/cdd' -/usr/bin/make -C ncbimime --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/ncbimime' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/ncbimime' -/usr/bin/make -C pcsubstance --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pcsubstance' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pcsubstance' -/usr/bin/make -C pcassay --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pcassay' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pcassay' -/usr/bin/make -C pcassay2 --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pcassay2' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/pcassay2' -/usr/bin/make -C gbseq --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/gbseq' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/gbseq' -/usr/bin/make -C insdseq --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/insdseq' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/insdseq' -/usr/bin/make -C tinyseq --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/tinyseq' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/tinyseq' -/usr/bin/make -C biotree --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/biotree' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/biotree' -/usr/bin/make -C entrezgene --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrezgene' -/bin/echo 'Warning: non-existent sub-project "unit_test"' -Warning: non-existent sub-project "unit_test" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/entrezgene' -/usr/bin/make -C omssa --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/omssa' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/omssa' -/usr/bin/make -C remap --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/remap' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/remap' -/usr/bin/make -C seqtest --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqtest' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/seqtest' -/usr/bin/make -C taxon1 --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon1' -/usr/bin/make -C taxon3 --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon3' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/taxon3' -/usr/bin/make -C gbproj --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/gbproj' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/gbproj' -/usr/bin/make -C trackmgr --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/trackmgr' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/trackmgr' -/usr/bin/make -C valerr --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valerr' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valerr' -/usr/bin/make -C valid --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/valid' -/usr/bin/make -C access --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/access' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/access' -/usr/bin/make -C docsum --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/docsum' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/docsum' -/usr/bin/make -C featdef --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/featdef' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/featdef' -/usr/bin/make -C genomecoll --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genomecoll' -/usr/bin/make -C gc_cli --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genomecoll/gc_cli' -TEST -- objects/genomecoll/gc_cli/gc_cli -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genomecoll/gc_cli' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genomecoll' -/usr/bin/make -C homologene --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/homologene' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/homologene' -/usr/bin/make -C mim --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/mim' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/mim' -/usr/bin/make -C objprt --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/objprt' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/objprt' -/usr/bin/make -C variation --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation' -/usr/bin/make -C macro --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/macro' -/bin/echo 'Warning: non-existent sub-project "unit_test"' -Warning: non-existent sub-project "unit_test" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/macro' -/usr/bin/make -C genesbyloc --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genesbyloc' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/genesbyloc' -/usr/bin/make -C coords --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/coords' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/coords' -/usr/bin/make -C varrep --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/varrep' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/varrep' -/usr/bin/make -C variation_libs --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation_libs' -/usr/bin/make -C dbsnp --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp' -/usr/bin/make -C search_by_rsid --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp/search_by_rsid' -make[8]: Nothing to be done for 'check_add_r'. -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp/search_by_rsid' -/usr/bin/make -C tooltip_service --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp/tooltip_service' -make[8]: Nothing to be done for 'check_add_r'. -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp/tooltip_service' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/variation_libs' -/usr/bin/make -C dbsnp --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/dbsnp' -/usr/bin/make -C primary_track --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/dbsnp/primary_track' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/dbsnp/primary_track' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects/dbsnp' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objects' -/usr/bin/make -C objmgr --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -/usr/bin/make -C util --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/util' -/bin/echo 'Warning: non-existent sub-project "unit_test"' -Warning: non-existent sub-project "unit_test" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/util' -/usr/bin/make -C split --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/split' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr/split' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objmgr' -/usr/bin/make -C objtools --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools' -/usr/bin/make -C logging --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/logging' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/logging' -/bin/echo 'Warning: non-existent sub-project "unit_test_util"' -Warning: non-existent sub-project "unit_test_util" -/usr/bin/make -C readers --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/readers' -/bin/echo 'Warning: non-existent sub-project "app"' -Warning: non-existent sub-project "app" -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -/bin/echo 'Warning: non-existent sub-project "unit_test"' -Warning: non-existent sub-project "unit_test" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/readers' -/usr/bin/make -C blast --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast' -/usr/bin/make -C seqdb_reader --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -/usr/bin/make -C demo --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo -TEST -- objtools/blast/seqdb_reader/demo/tax4blast -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/usr/bin/make -C test --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -TEST -- objtools/blast/seqdb_reader/test/seqdb_perf -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -/usr/bin/make -C seqdb_writer --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -/usr/bin/make -C unit_test --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test -TEST -- objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -/usr/bin/make -C services --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' -/usr/bin/make -C unit_test --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -SKIP -- objtools/blast/services/unit_test/blast_services_unit_test -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/services' -/usr/bin/make -C blastdb_format --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -/usr/bin/make -C unit_test --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/blast' -/bin/echo 'Warning: non-existent sub-project "lds2"' -Warning: non-existent sub-project "lds2" -/usr/bin/make -C pubseq_gateway --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway' -/bin/echo 'Warning: non-existent sub-project "cassandra"' -Warning: non-existent sub-project "cassandra" -/usr/bin/make -C client --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -/usr/bin/make -C test --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client/test' -TEST -- objtools/pubseq_gateway/client/test/test_psg_client_impl -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client/test' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -/bin/echo 'Warning: non-existent sub-project "protobuf"' -Warning: non-existent sub-project "protobuf" -/bin/echo 'Warning: non-existent sub-project "cache"' -Warning: non-existent sub-project "cache" -/bin/echo 'Warning: non-existent sub-project "ipg"' -Warning: non-existent sub-project "ipg" -/bin/echo 'Warning: non-existent sub-project "myncbi"' -Warning: non-existent sub-project "myncbi" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/pubseq_gateway' -/usr/bin/make -C data_loaders --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders' -/usr/bin/make -C genbank --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/usr/bin/make -C cache --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[8]: Nothing to be done for 'check_add_r'. -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -/bin/echo 'Warning: non-existent sub-project "pubseq"' -Warning: non-existent sub-project "pubseq" -/usr/bin/make -C id2 --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[8]: Nothing to be done for 'check_add_r'. -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -/usr/bin/make -C id1 --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[8]: Nothing to be done for 'check_add_r'. -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -/bin/echo 'Warning: non-existent sub-project "pubseq2"' -Warning: non-existent sub-project "pubseq2" -/usr/bin/make -C gicache --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/gicache' -make[8]: Nothing to be done for 'check_add_r'. -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/gicache' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/bin/echo 'Warning: non-existent sub-project "lds2"' -Warning: non-existent sub-project "lds2" -/usr/bin/make -C blastdb --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/bin/echo 'Warning: non-existent sub-project "unit_test"' -Warning: non-existent sub-project "unit_test" -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/bin/echo 'Warning: non-existent sub-project "patcher"' -Warning: non-existent sub-project "patcher" -/bin/echo 'Warning: non-existent sub-project "asn_cache"' -Warning: non-existent sub-project "asn_cache" -/bin/echo 'Warning: non-existent sub-project "cdd"' -Warning: non-existent sub-project "cdd" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/data_loaders' -/usr/bin/make -C simple --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/simple' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/simple' -/usr/bin/make -C alnmgr --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/alnmgr' -/bin/echo 'Warning: non-existent sub-project "demo"' -Warning: non-existent sub-project "demo" -/bin/echo 'Warning: non-existent sub-project "unit_test"' -Warning: non-existent sub-project "unit_test" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/alnmgr' -/bin/echo 'Warning: non-existent sub-project "cddalignview"' -Warning: non-existent sub-project "cddalignview" -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -/bin/echo 'Warning: non-existent sub-project "manip"' -Warning: non-existent sub-project "manip" -/usr/bin/make -C eutils --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils' -/usr/bin/make -C egquery --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/egquery' -/usr/bin/make -C elink --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/elink' -/usr/bin/make -C epost --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/epost' -/usr/bin/make -C esearch --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esearch' -/usr/bin/make -C espell --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/espell' -/usr/bin/make -C esummary --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/esummary' -/bin/echo 'Warning: non-existent sub-project "linkout"' -Warning: non-existent sub-project "linkout" -/usr/bin/make -C einfo --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/einfo' -/usr/bin/make -C uilist --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/uilist' -/usr/bin/make -C ehistory --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -/usr/bin/make -C efetch --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/efetch' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/efetch' -/usr/bin/make -C api --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/api' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils/api' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/eutils' -/usr/bin/make -C edit --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/edit' -/bin/echo 'Warning: non-existent sub-project "unit_test"' -Warning: non-existent sub-project "unit_test" -/bin/echo 'Warning: non-existent sub-project "pubmed_fetch"' -Warning: non-existent sub-project "pubmed_fetch" -/bin/echo 'Warning: non-existent sub-project "pubmed_citmatch"' -Warning: non-existent sub-project "pubmed_citmatch" -/bin/echo 'Warning: non-existent sub-project "test_remote_updater"' -Warning: non-existent sub-project "test_remote_updater" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/edit' -/usr/bin/make -C cleanup --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/cleanup' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/cleanup' -/usr/bin/make -C format --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/format' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/format' -/bin/echo 'Warning: non-existent sub-project "huge_asn"' -Warning: non-existent sub-project "huge_asn" -/bin/echo 'Warning: non-existent sub-project "validator"' -Warning: non-existent sub-project "validator" -/bin/echo 'Warning: non-existent sub-project "asniotest"' -Warning: non-existent sub-project "asniotest" -/bin/echo 'Warning: non-existent sub-project "align"' -Warning: non-existent sub-project "align" -/usr/bin/make -C seqmasks_io --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/seqmasks_io' -/bin/echo 'Warning: non-existent sub-project "unit_test"' -Warning: non-existent sub-project "unit_test" -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/seqmasks_io' -/usr/bin/make -C align_format --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format' -/usr/bin/make -C unit_test --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -TEST -- objtools/align_format/unit_test/align_format_unit_test -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format' -/bin/echo 'Warning: non-existent sub-project "snputil"' -Warning: non-existent sub-project "snputil" -/bin/echo 'Warning: non-existent sub-project "uudutil"' -Warning: non-existent sub-project "uudutil" -/bin/echo 'Warning: non-existent sub-project "variation"' -Warning: non-existent sub-project "variation" -/bin/echo 'Warning: non-existent sub-project "writers"' -Warning: non-existent sub-project "writers" -/bin/echo 'Warning: non-existent sub-project "import"' -Warning: non-existent sub-project "import" -/bin/echo 'Warning: non-existent sub-project "flatfile"' -Warning: non-existent sub-project "flatfile" -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools' -/bin/echo 'Warning: non-existent sub-project "ctools"' -Warning: non-existent sub-project "ctools" -/usr/bin/make -C sra --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra' -/usr/bin/make -C readers --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers' -/usr/bin/make -C sra --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/sra' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/sra' -/usr/bin/make -C bam --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/bam' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers/bam' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/readers' -/usr/bin/make -C data_loaders --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders' -/usr/bin/make -C sra --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/sra' -/usr/bin/make -C test --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/sra/test' -TEST -- sra/data_loaders/sra/test/test_sra_loader -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/sra/test' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/sra' -/usr/bin/make -C bam --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/bam' -/usr/bin/make -C test --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/bam/test' -TEST -- sra/data_loaders/bam/test/test_bam_loader -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/bam/test' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/bam' -/usr/bin/make -C csra --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/csra' -/usr/bin/make -C test --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/csra/test' -TEST -- sra/data_loaders/csra/test/test_csra_loader -TEST -- sra/data_loaders/csra/test/test_csra_loader_mt -SKIP -- sra/data_loaders/csra/test/test_sra -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/csra/test' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/csra' -/usr/bin/make -C wgs --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/wgs' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/wgs' -/usr/bin/make -C vdbgraph --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/vdbgraph' -/usr/bin/make -C test --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/vdbgraph/test' -TEST -- sra/data_loaders/vdbgraph/test/test_vdbgraph_loader -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/vdbgraph/test' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/vdbgraph' -/usr/bin/make -C snp --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/snp' -/bin/echo 'Warning: non-existent sub-project "test"' -Warning: non-existent sub-project "test" -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders/snp' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra/data_loaders' -/bin/echo 'Warning: non-existent sub-project "app"' -Warning: non-existent sub-project "app" -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/sra' -/usr/bin/make -C algo --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo' -/usr/bin/make -C dustmask --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/dustmask' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/dustmask' -/usr/bin/make -C winmask --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/winmask' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/winmask' -/bin/echo 'Warning: non-existent sub-project "sequence"' -Warning: non-existent sub-project "sequence" -/usr/bin/make -C blast --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast' -/usr/bin/make -C composition_adjustment --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -/usr/bin/make -C core --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/core' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/core' -/usr/bin/make -C dbindex --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' -/usr/bin/make -C makeindex --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -SKIP -- algo/blast/dbindex/makeindex/makeindex -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/dbindex' -/bin/echo 'Warning: non-existent sub-project "dbindex_search"' -Warning: non-existent sub-project "dbindex_search" -/usr/bin/make -C api --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/api' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/api' -/usr/bin/make -C proteinkmer --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -/usr/bin/make -C unit_test --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -TEST -- algo/blast/proteinkmer/unit_test/proteinkmer_unit_test -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -/usr/bin/make -C format --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/format' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/format' -/usr/bin/make -C blastinput --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput' -/usr/bin/make -C unit_test --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -/bin/echo 'Warning: non-existent sub-project "demo"' -Warning: non-existent sub-project "demo" -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput' -/bin/echo 'Warning: non-existent sub-project "blast_sra_input"' -Warning: non-existent sub-project "blast_sra_input" -/usr/bin/make -C igblast --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/igblast' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/igblast' -/bin/echo 'Warning: non-existent sub-project "gumbel_params"' -Warning: non-existent sub-project "gumbel_params" -/usr/bin/make -C vdb --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/vdb' -make[7]: Nothing to be done for 'check_add_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/vdb' -/usr/bin/make -C unit_tests --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests' -/usr/bin/make -C blast_format --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -/usr/bin/make -C blastdb --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -/usr/bin/make -C seqdb_reader --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test -TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test -TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_tax4blast_unit_test -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/make -C api --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -TEST -- algo/blast/unit_tests/api/blast_unit_test -TEST -- algo/blast/unit_tests/api/aalookup_unit_test -TEST -- algo/blast/unit_tests/api/seqsrc_unit_test -TEST -- algo/blast/unit_tests/api/delta_unit_test -TEST -- algo/blast/unit_tests/api/ntlookup_unit_test -TEST -- algo/blast/unit_tests/api/seqinfosrc_unit_test -TEST -- algo/blast/unit_tests/api/setupfactory_unit_test -TEST -- algo/blast/unit_tests/api/search_strategy_unit_test -TEST -- algo/blast/unit_tests/api/redoalignment_unit_test -TEST -- algo/blast/unit_tests/api/queryinfo_unit_test -TEST -- algo/blast/unit_tests/api/querydata_unit_test -TEST -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test -TEST -- algo/blast/unit_tests/api/blastsetup_unit_test -TEST -- algo/blast/unit_tests/api/blastextend_unit_test -TEST -- algo/blast/unit_tests/api/blastdiag_unit_test -TEST -- algo/blast/unit_tests/api/pssmcreate_unit_test -TEST -- algo/blast/unit_tests/api/psiblast_iteration_unit_test -TEST -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test -TEST -- algo/blast/unit_tests/api/hspfilter_culling_unit_test -TEST -- algo/blast/unit_tests/api/optionshandle_unit_test -TEST -- algo/blast/unit_tests/api/msa2pssm_unit_test -TEST -- algo/blast/unit_tests/api/tracebacksearch_unit_test -TEST -- algo/blast/unit_tests/api/traceback_unit_test -TEST -- algo/blast/unit_tests/api/psibl2seq_unit_test -TEST -- algo/blast/unit_tests/api/psiblast_unit_test -TEST -- algo/blast/unit_tests/api/prelimsearch_unit_test -TEST -- algo/blast/unit_tests/api/phiblast_unit_test -TEST -- algo/blast/unit_tests/api/split_query_unit_test -TEST -- algo/blast/unit_tests/api/scoreblk_unit_test -TEST -- algo/blast/unit_tests/api/hspstream_unit_test -TEST -- algo/blast/unit_tests/api/rps_unit_test -TEST -- algo/blast/unit_tests/api/gapinfo_unit_test -TEST -- algo/blast/unit_tests/api/blasthits_unit_test -TEST -- algo/blast/unit_tests/api/linkhsp_unit_test -TEST -- algo/blast/unit_tests/api/blastengine_unit_test -TEST -- algo/blast/unit_tests/api/subj_ranges_unit_test -TEST -- algo/blast/unit_tests/api/version_reference_unit_test -TEST -- algo/blast/unit_tests/api/ntscan_unit_test -TEST -- algo/blast/unit_tests/api/aascan_unit_test -TEST -- algo/blast/unit_tests/api/remote_blast_unit_test -TEST -- algo/blast/unit_tests/api/uniform_search_unit_test -TEST -- algo/blast/unit_tests/api/blastfilter_unit_test -TEST -- algo/blast/unit_tests/api/blastoptions_unit_test -TEST -- algo/blast/unit_tests/api/gencode_singleton_unit_test -TEST -- algo/blast/unit_tests/api/bl2seq_unit_test -TEST -- algo/blast/unit_tests/api/stat_unit_test -TEST -- algo/blast/unit_tests/api/magicblast_unit_test -TEST -- algo/blast/unit_tests/api/rmblast_blasthits_unit_test -TEST -- algo/blast/unit_tests/api/rmblast_traceback_unit_test -make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast' -/usr/bin/make -C segmask --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/segmask' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/segmask' -/bin/echo 'Warning: non-existent sub-project "align"' -Warning: non-existent sub-project "align" -/bin/echo 'Warning: non-existent sub-project "structure"' -Warning: non-existent sub-project "structure" -/bin/echo 'Warning: non-existent sub-project "gnomon"' -Warning: non-existent sub-project "gnomon" -/bin/echo 'Warning: non-existent sub-project "tree"' -Warning: non-existent sub-project "tree" -/bin/echo 'Warning: non-existent sub-project "phy_tree"' -Warning: non-existent sub-project "phy_tree" -/bin/echo 'Warning: non-existent sub-project "seqqa"' -Warning: non-existent sub-project "seqqa" -/bin/echo 'Warning: non-existent sub-project "cobalt"' -Warning: non-existent sub-project "cobalt" -/bin/echo 'Warning: non-existent sub-project "text"' -Warning: non-existent sub-project "text" -/bin/echo 'Warning: non-existent sub-project "volume_merge"' -Warning: non-existent sub-project "volume_merge" -/bin/echo 'Warning: non-existent sub-project "primer"' -Warning: non-existent sub-project "primer" -/bin/echo 'Warning: non-existent sub-project "id_mapper"' -Warning: non-existent sub-project "id_mapper" -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo' -/usr/bin/make -C misc --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/misc' -/usr/bin/make -C third_party --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/misc/third_party' -make[6]: Nothing to be done for 'check_add_r'. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/misc/third_party' -/usr/bin/make -C third_party_static --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/misc/third_party_static' -NOTE: Skipping project third_party_static due to unmet requirements: --DLL -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/misc/third_party_static' -make[7]: warning: -j12 forced in submake: resetting jobserver mode. -make[7]: Nothing to be done for 'mark-as-disabled_r'. -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/misc/third_party_static' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/misc/third_party_static' -/bin/echo 'Warning: non-existent sub-project "clog"' -Warning: non-existent sub-project "clog" -/bin/echo 'Warning: non-existent sub-project "grid_cgi"' -Warning: non-existent sub-project "grid_cgi" -/bin/echo 'Warning: non-existent sub-project "xmlwrapp"' -Warning: non-existent sub-project "xmlwrapp" -/bin/echo 'Warning: non-existent sub-project "eutils_client"' -Warning: non-existent sub-project "eutils_client" -/bin/echo 'Warning: non-existent sub-project "hydra_client"' -Warning: non-existent sub-project "hydra_client" -/bin/echo 'Warning: non-existent sub-project "discrepancy"' -Warning: non-existent sub-project "discrepancy" -/bin/echo 'Warning: non-existent sub-project "xmlreaders"' -Warning: non-existent sub-project "xmlreaders" -/bin/echo 'Warning: non-existent sub-project "hgvs"' -Warning: non-existent sub-project "hgvs" -/bin/echo 'Warning: non-existent sub-project "netstorage"' -Warning: non-existent sub-project "netstorage" -/usr/bin/make -C jsonwrapp --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/misc/jsonwrapp' -/usr/bin/make -C test --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/misc/jsonwrapp/test' -TEST -- misc/jsonwrapp/test/test_jsonwrapp -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/misc/jsonwrapp/test' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/misc/jsonwrapp' -/bin/echo 'Warning: non-existent sub-project "biosample_util"' -Warning: non-existent sub-project "biosample_util" -/bin/echo 'Warning: non-existent sub-project "data_loaders_util"' -Warning: non-existent sub-project "data_loaders_util" -/bin/echo 'Warning: non-existent sub-project "lapackwrapp"' -Warning: non-existent sub-project "lapackwrapp" -/bin/echo 'Warning: non-existent sub-project "pmcidconv_client"' -Warning: non-existent sub-project "pmcidconv_client" -/bin/echo 'Warning: non-existent sub-project "cgi_redirect"' -Warning: non-existent sub-project "cgi_redirect" -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/misc' -/bin/echo 'Warning: non-existent sub-project "gui"' -Warning: non-existent sub-project "gui" -/usr/bin/make -C app --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app' -/bin/echo 'Warning: non-existent sub-project "asn2asn"' -Warning: non-existent sub-project "asn2asn" -/bin/echo 'Warning: non-existent sub-project "asn2fasta"' -Warning: non-existent sub-project "asn2fasta" -/bin/echo 'Warning: non-existent sub-project "asn2flat"' -Warning: non-existent sub-project "asn2flat" -/bin/echo 'Warning: non-existent sub-project "flat2asn"' -Warning: non-existent sub-project "flat2asn" -/bin/echo 'Warning: non-existent sub-project "asnval"' -Warning: non-existent sub-project "asnval" -/bin/echo 'Warning: non-existent sub-project "asn_cleanup"' -Warning: non-existent sub-project "asn_cleanup" -/bin/echo 'Warning: non-existent sub-project "id1_fetch"' -Warning: non-existent sub-project "id1_fetch" -/usr/bin/make -C blast --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -SKIP -- app/blast/blastp -SKIP -- app/blast/blastn -SKIP -- app/blast/blastx -SKIP -- app/blast/tblastn -SKIP -- app/blast/tblastx -SKIP -- app/blast/psiblast -SKIP -- app/blast/rpsblast -SKIP -- app/blast/rpstblastn -SKIP -- app/blast/blast_formatter -SKIP -- app/blast/deltablast -SKIP -- app/blast/seedtop -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blast' -/bin/echo 'Warning: non-existent sub-project "convert_seq"' -Warning: non-existent sub-project "convert_seq" -/bin/echo 'Warning: non-existent sub-project "nmer_repeats"' -Warning: non-existent sub-project "nmer_repeats" -/bin/echo 'Warning: non-existent sub-project "objmgr"' -Warning: non-existent sub-project "objmgr" -/bin/echo 'Warning: non-existent sub-project "gi2taxid"' -Warning: non-existent sub-project "gi2taxid" -/bin/echo 'Warning: non-existent sub-project "netschedule"' -Warning: non-existent sub-project "netschedule" -/bin/echo 'Warning: non-existent sub-project "grid"' -Warning: non-existent sub-project "grid" -/bin/echo 'Warning: non-existent sub-project "netstorage"' -Warning: non-existent sub-project "netstorage" -/bin/echo 'Warning: non-existent sub-project "igblast"' -Warning: non-existent sub-project "igblast" -/usr/bin/make -C winmasker --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/winmasker' -SKIP -- app/winmasker/winmasker -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/winmasker' -/usr/bin/make -C dustmasker --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/dustmasker' -SKIP -- app/dustmasker/dustmasker -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/dustmasker' -/usr/bin/make -C segmasker --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/segmasker' -SKIP -- app/segmasker/segmasker -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/segmasker' -/usr/bin/make -C blastdb --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -SKIP -- app/blastdb/blastdbcmd -SKIP -- app/blastdb/makeblastdb -SKIP -- app/blastdb/blastdb_aliastool -SKIP -- app/blastdb/blastdbcheck -SKIP -- app/blastdb/convert2blastmask -SKIP -- app/blastdb/blastdbcp -SKIP -- app/blastdb/makeprofiledb -SKIP -- app/blastdb/blastdb_convert -SKIP -- app/blastdb/blastdb_path -SKIP -- app/blastdb/makeclusterdb -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -C blastvdb --jobserver-auth=fifo:/tmp/GMfifo3892642 check_add_r || exit 5 -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -SKIP -- app/blastvdb/blastn_vdb -SKIP -- app/blastvdb/tblastn_vdb -SKIP -- app/blastvdb/blast_vdb_cmd -SKIP -- app/blastvdb/blast_formatter_vdb -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app/blastvdb' -/bin/echo 'Warning: non-existent sub-project "vecscreen"' -Warning: non-existent sub-project "vecscreen" -/bin/echo 'Warning: non-existent sub-project "agpconvert"' -Warning: non-existent sub-project "agpconvert" -/bin/echo 'Warning: non-existent sub-project "id2_fetch"' -Warning: non-existent sub-project "id2_fetch" -/bin/echo 'Warning: non-existent sub-project "agp_validate"' -Warning: non-existent sub-project "agp_validate" -/bin/echo 'Warning: non-existent sub-project "objextract"' -Warning: non-existent sub-project "objextract" -/bin/echo 'Warning: non-existent sub-project "bdb_env_keeper"' -Warning: non-existent sub-project "bdb_env_keeper" -/bin/echo 'Warning: non-existent sub-project "nw_aligner"' -Warning: non-existent sub-project "nw_aligner" -/bin/echo 'Warning: non-existent sub-project "speedtest"' -Warning: non-existent sub-project "speedtest" -/bin/echo 'Warning: non-existent sub-project "idmapper"' -Warning: non-existent sub-project "idmapper" -/bin/echo 'Warning: non-existent sub-project "formatguess"' -Warning: non-existent sub-project "formatguess" -/bin/echo 'Warning: non-existent sub-project "multireader"' -Warning: non-existent sub-project "multireader" -/bin/echo 'Warning: non-existent sub-project "read_blast_result"' -Warning: non-existent sub-project "read_blast_result" -/bin/echo 'Warning: non-existent sub-project "splign"' -Warning: non-existent sub-project "splign" -/bin/echo 'Warning: non-existent sub-project "hfilter"' -Warning: non-existent sub-project "hfilter" -/bin/echo 'Warning: non-existent sub-project "annotwriter"' -Warning: non-existent sub-project "annotwriter" -/bin/echo 'Warning: non-existent sub-project "compart"' -Warning: non-existent sub-project "compart" -/bin/echo 'Warning: non-existent sub-project "streamtest"' -Warning: non-existent sub-project "streamtest" -/bin/echo 'Warning: non-existent sub-project "lds2_indexer"' -Warning: non-existent sub-project "lds2_indexer" -/bin/echo 'Warning: non-existent sub-project "discrepancy_report"' -Warning: non-existent sub-project "discrepancy_report" -/bin/echo 'Warning: non-existent sub-project "biosample_chk"' -Warning: non-existent sub-project "biosample_chk" -/bin/echo 'Warning: non-existent sub-project "bsdiff"' -Warning: non-existent sub-project "bsdiff" -/bin/echo 'Warning: non-existent sub-project "gap_stats"' -Warning: non-existent sub-project "gap_stats" -/bin/echo 'Warning: non-existent sub-project "table2asn"' -Warning: non-existent sub-project "table2asn" -/bin/echo 'Warning: non-existent sub-project "srcchk"' -Warning: non-existent sub-project "srcchk" -/bin/echo 'Warning: non-existent sub-project "tableval"' -Warning: non-existent sub-project "tableval" -/bin/echo 'Warning: non-existent sub-project "ncbi_encrypt"' -Warning: non-existent sub-project "ncbi_encrypt" -/bin/echo 'Warning: non-existent sub-project "ssub_fork"' -Warning: non-existent sub-project "ssub_fork" -/bin/echo 'Warning: non-existent sub-project "asn_cache"' -Warning: non-existent sub-project "asn_cache" -/bin/echo 'Warning: non-existent sub-project "magicblast"' -Warning: non-existent sub-project "magicblast" -/bin/echo 'Warning: non-existent sub-project "multipattern"' -Warning: non-existent sub-project "multipattern" -/bin/echo 'Warning: non-existent sub-project "prt2fsm"' -Warning: non-existent sub-project "prt2fsm" -/bin/echo 'Warning: non-existent sub-project "pub_report"' -Warning: non-existent sub-project "pub_report" -/bin/echo 'Warning: non-existent sub-project "gff_deconcat"' -Warning: non-existent sub-project "gff_deconcat" -/bin/echo 'Warning: non-existent sub-project "sub_fuse"' -Warning: non-existent sub-project "sub_fuse" -/bin/echo 'Warning: non-existent sub-project "feat_import"' -Warning: non-existent sub-project "feat_import" -/bin/echo 'Warning: non-existent sub-project "split_cache"' -Warning: non-existent sub-project "split_cache" -/bin/echo 'Warning: non-existent sub-project "wig2table"' -Warning: non-existent sub-project "wig2table" -/bin/echo 'Warning: non-existent sub-project "netcache"' -Warning: non-existent sub-project "netcache" -/bin/echo 'Warning: non-existent sub-project "rmblastn"' -Warning: non-existent sub-project "rmblastn" -/bin/echo 'Warning: non-existent sub-project "dblb"' -Warning: non-existent sub-project "dblb" -/bin/echo 'Warning: non-existent sub-project "tls"' -Warning: non-existent sub-project "tls" -/bin/echo 'Warning: non-existent sub-project "idfetch"' -Warning: non-existent sub-project "idfetch" -/bin/echo 'Warning: non-existent sub-project "pubseq_gateway"' -Warning: non-existent sub-project "pubseq_gateway" -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/app' -/bin/echo 'Warning: non-existent sub-project "sample"' -Warning: non-existent sub-project "sample" -/bin/echo 'Warning: non-existent sub-project "internal"' -Warning: non-existent sub-project "internal" -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build' ----------------------------------------------------------------------- -Building check script... -Done. - -Testing, please wait... - -/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/check.sh: 331: ulimit: error setting limit (Operation not permitted) -OK -- [serial/datatool] datatool.sh (real 0.54, user 0.23, sys 0.06) -SKP -- [serial/datatool] datatool_xml.sh -ABS -- [objects/genomecoll/gc_cli] test_gencoll_svc_ASSM -ABS -- [objects/genomecoll/gc_cli] test_gencoll_svc_ASSM_BY_SEQ -ABS -- [objects/genomecoll/gc_cli] test_gencoll_svc_TYPELOC -DIS -- [objtools/blast/seqdb_reader/demo] tax4blast -taxids 9606 -DIS -- [objtools/blast/seqdb_reader/demo] tax4blast -taxids 2 -DIS -- [objtools/blast/seqdb_reader/demo] tax4blast -taxids 40674 -DIS -- [objtools/blast/seqdb_reader/demo] tax4blast -taxids 9443 -DIS -- [objtools/blast/seqdb_reader/demo] tax4blast -taxids 2759 -DIS -- [objtools/blast/seqdb_reader/demo] tax4blast -taxids 2157 -DIS -- [objtools/blast/seqdb_reader/demo] tax4blast -taxids 4751 -DIS -- [objtools/blast/seqdb_reader/demo] tax4blast -taxids 562 -DIS -- [objtools/blast/seqdb_reader/demo] tax4blast -taxids 63221 -DIS -- [objtools/blast/seqdb_reader/test] scan_blastdb_mt -DIS -- [objtools/blast/seqdb_reader/test] scan_blastdb_st -DIS -- [objtools/blast/seqdb_reader/test] get_blastdb_metadata -OK -- [objtools/blast/seqdb_writer/unit_test] writedb_unit_test (real 0.61, user 0.34, sys 0.10) -OK -- [objtools/blast/seqdb_writer/unit_test] writedb_lmdb_unit_test (real 0.25, user 0.19, sys 0.01) -OK -- [objtools/blast/blastdb_format/unit_test] blastdb_format_unit_test (real 0.10, user 0.03, sys 0.02) -ABS -- [objtools/pubseq_gateway/client/test] test_psg_client_impl -ERR [201] -- [objtools/align_format/unit_test] align_format_unit_test (real 0.49, user 0.33, sys 0.04) -ABS -- [sra/data_loaders/sra/test] test_sra_loader -ABS -- [sra/data_loaders/bam/test] test_bam_loader -ABS -- [sra/data_loaders/csra/test] test_csra_loader -ABS -- [sra/data_loaders/csra/test] test_csra_loader_mt -ABS -- [sra/data_loaders/csra/test] test_csra_loader_mt_ref -ABS -- [sra/data_loaders/vdbgraph/test] test_vdbgraph_loader -OK -- [algo/blast/proteinkmer/unit_test] proteinkmer_unit_test (real 4.96, user 2.86, sys 1.94) -ERR [201] -- [algo/blast/blastinput/unit_test] blastinput_unit_test (real 2.41, user 0.28, sys 0.04) -ERR [201] -- [algo/blast/unit_tests/blast_format] blast_format_unit_test (real 1.30, user 0.14, sys 0.04) -ERR [201] -- [algo/blast/unit_tests/blastdb] bdbloader_unit_test (real 0.21, user 0.19, sys 0.01) -DIS -- [algo/blast/unit_tests/seqdb_reader] seqdb_unit_test -OK -- [algo/blast/unit_tests/seqdb_reader] seqdb_lmdb_unit_test (real 0.22, user 0.21, sys 0.00) -OK -- [algo/blast/unit_tests/seqdb_reader] seqdb_tax4blast_unit_test (real 0.11, user 0.03, sys 0.01) -OK -- [algo/blast/unit_tests/api] blast_unit_test (real 0.05, user 0.03, sys 0.01) -TO -- [algo/blast/unit_tests/api] aalookup_unit_test (real 204.26, user 0.92, sys 0.17) -TO -- [algo/blast/unit_tests/api] seqsrc_unit_test (real 203.12, user 0.14, sys 0.13) -OK -- [algo/blast/unit_tests/api] delta_unit_test (real 0.75, user 0.20, sys 0.04) -TO -- [algo/blast/unit_tests/api] ntlookup_unit_test (real 200.33, user 0.14, sys 0.03) -TO -- [algo/blast/unit_tests/api] seqinfosrc_unit_test (real 208.09, user 0.06, sys 0.02) -TO -- [algo/blast/unit_tests/api] setupfactory_unit_test (real 682.46, user 0.13, sys 255.81) -TO -- [algo/blast/unit_tests/api] search_strategy_unit_test (real 205.75, user 0.08, sys 0.06) -TO -- [algo/blast/unit_tests/api] redoalignment_unit_test (real 200.16, user 0.16, sys 0.06) -TO -- [algo/blast/unit_tests/api] queryinfo_unit_test (real 200.16, user 0.14, sys 0.03) -TO -- [algo/blast/unit_tests/api] querydata_unit_test (real 200.17, user 0.16, sys 0.02) -OK -- [algo/blast/unit_tests/api] pssmenginefreqratios_unit_test (real 0.12, user 0.05, sys 0.01) -TO -- [algo/blast/unit_tests/api] blastsetup_unit_test (real 200.20, user 0.14, sys 0.07) -TO -- [algo/blast/unit_tests/api] blastextend_unit_test (real 200.18, user 0.13, sys 0.06) -OK -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.07, user 0.06, sys 0.01) -TO -- [algo/blast/unit_tests/api] pssmcreate_unit_test (real 200.19, user 0.19, sys 0.10) -OK -- [algo/blast/unit_tests/api] psiblast_iteration_unit_test (real 0.13, user 0.04, sys 0.00) -OK -- [algo/blast/unit_tests/api] hspfilter_besthit_unit_test (real 0.06, user 0.02, sys 0.01) -OK -- [algo/blast/unit_tests/api] hspfilter_culling_unit_test (real 0.05, user 0.02, sys 0.01) -OK -- [algo/blast/unit_tests/api] optionshandle_unit_test (real 0.11, user 0.04, sys 0.03) -OK -- [algo/blast/unit_tests/api] msa2pssm_unit_test (real 0.08, user 0.04, sys 0.01) -DIS -- [algo/blast/unit_tests/api] tracebacksearch_unit_test -TO -- [algo/blast/unit_tests/api] traceback_unit_test (real 200.13, user 0.13, sys 0.03) -OK -- [algo/blast/unit_tests/api] psibl2seq_unit_test (real 0.13, user 0.05, sys 0.02) -OK -- [algo/blast/unit_tests/api] psiblast_unit_test (real 0.48, user 0.39, sys 0.02) -TO -- [algo/blast/unit_tests/api] prelimsearch_unit_test (real 203.95, user 0.13, sys 0.35) -OK -- [algo/blast/unit_tests/api] phiblast_unit_test (real 0.09, user 0.05, sys 0.01) -TO -- [algo/blast/unit_tests/api] split_query_unit_test (real 200.16, user 0.17, sys 0.05) -TO -- [algo/blast/unit_tests/api] scoreblk_unit_test (real 200.18, user 0.17, sys 0.08) -OK -- [algo/blast/unit_tests/api] hspstream_unit_test (real 0.19, user 0.15, sys 0.05) -TO -- [algo/blast/unit_tests/api] rps_unit_test (real 200.20, user 0.18, sys 0.10) -OK -- [algo/blast/unit_tests/api] gapinfo_unit_test (real 0.03, user 0.02, sys 0.01) -ERR [201] -- [algo/blast/unit_tests/api] blasthits_unit_test (real 110.74, user 0.37, sys 0.07) -ERR [139] -- [algo/blast/unit_tests/api] linkhsp_unit_test (real 110.46, user 0.13, sys 0.09) -TO -- [algo/blast/unit_tests/api] blastengine_unit_test (real 200.17, user 0.19, sys 0.08) -OK -- [algo/blast/unit_tests/api] subj_ranges_unit_test (real 0.09, user 0.07, sys 0.02) -OK -- [algo/blast/unit_tests/api] version_reference_unit_test (real 0.09, user 0.07, sys 0.01) -TO -- [algo/blast/unit_tests/api] ntscan_unit_test (real 200.17, user 0.15, sys 0.08) -TO -- [algo/blast/unit_tests/api] aascan_unit_test (real 200.16, user 0.19, sys 0.06) -TO -- [algo/blast/unit_tests/api] remote_blast_unit_test (real 200.14, user 0.33, sys 0.08) -OK -- [algo/blast/unit_tests/api] uniform_search_unit_test (real 0.18, user 0.05, sys 0.01) -TO -- [algo/blast/unit_tests/api] blastfilter_unit_test (real 200.16, user 0.15, sys 0.06) -TO -- [algo/blast/unit_tests/api] blastoptions_unit_test (real 200.16, user 0.20, sys 0.08) -OK -- [algo/blast/unit_tests/api] gencode_singleton_unit_test (real 0.09, user 0.07, sys 0.02) -TO -- [algo/blast/unit_tests/api] bl2seq_unit_test (real 200.14, user 0.15, sys 0.06) -OK -- [algo/blast/unit_tests/api] stat_unit_test (real 0.07, user 0.04, sys 0.00) -OK -- [algo/blast/unit_tests/api] magicblast_unit_test (real 5.51, user 2.97, sys 2.49) -OK -- [algo/blast/unit_tests/api] rmblast_blasthits_unit_test (real 0.06, user 0.03, sys 0.00) -TO -- [algo/blast/unit_tests/api] rmblast_traceback_unit_test (real 200.17, user 0.17, sys 0.05) -ABS -- [misc/jsonwrapp/test] test_jsonwrapp - -Succeeded : 28 -Timeout : 25 -Failed : 6 -Absent : 26 - -make[3]: *** [/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/build-system/Makefile.meta_r:46: check_r.real] Error 7 -make[3]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build' -make[2]: *** [Makefile:33: check] Error 2 -make[2]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++' -dh_auto_test: error: cd c\+\+ && /usr/bin/make -j12 check TESTSUITEFLAGS="-j12 --verbose" VERBOSE=1 returned exit code 2 -make[1]: [debian/rules:122: override_dh_auto_test] Error 25 (ignored) -c++/BUILD/build/check.sh concat_err -cat c++/BUILD/build/check.sh.out_err -ERR [201] -- [objtools/align_format/unit_test] align_format_unit_test (real 0.49, user 0.33, sys 0.04) -ERR [201] -- [algo/blast/blastinput/unit_test] blastinput_unit_test (real 2.41, user 0.28, sys 0.04) -ERR [201] -- [algo/blast/unit_tests/blast_format] blast_format_unit_test (real 1.30, user 0.14, sys 0.04) -ERR [201] -- [algo/blast/unit_tests/blastdb] bdbloader_unit_test (real 0.21, user 0.19, sys 0.01) -TO -- [algo/blast/unit_tests/api] aalookup_unit_test (real 204.26, user 0.92, sys 0.17) -TO -- [algo/blast/unit_tests/api] seqsrc_unit_test (real 203.12, user 0.14, sys 0.13) -TO -- [algo/blast/unit_tests/api] ntlookup_unit_test (real 200.33, user 0.14, sys 0.03) -TO -- [algo/blast/unit_tests/api] seqinfosrc_unit_test (real 208.09, user 0.06, sys 0.02) -TO -- [algo/blast/unit_tests/api] setupfactory_unit_test (real 682.46, user 0.13, sys 255.81) -TO -- [algo/blast/unit_tests/api] search_strategy_unit_test (real 205.75, user 0.08, sys 0.06) -TO -- [algo/blast/unit_tests/api] redoalignment_unit_test (real 200.16, user 0.16, sys 0.06) -TO -- [algo/blast/unit_tests/api] queryinfo_unit_test (real 200.16, user 0.14, sys 0.03) -TO -- [algo/blast/unit_tests/api] querydata_unit_test (real 200.17, user 0.16, sys 0.02) -TO -- [algo/blast/unit_tests/api] blastsetup_unit_test (real 200.20, user 0.14, sys 0.07) -TO -- [algo/blast/unit_tests/api] blastextend_unit_test (real 200.18, user 0.13, sys 0.06) -TO -- [algo/blast/unit_tests/api] pssmcreate_unit_test (real 200.19, user 0.19, sys 0.10) -TO -- [algo/blast/unit_tests/api] traceback_unit_test (real 200.13, user 0.13, sys 0.03) -TO -- [algo/blast/unit_tests/api] prelimsearch_unit_test (real 203.95, user 0.13, sys 0.35) -TO -- [algo/blast/unit_tests/api] split_query_unit_test (real 200.16, user 0.17, sys 0.05) -TO -- [algo/blast/unit_tests/api] scoreblk_unit_test (real 200.18, user 0.17, sys 0.08) -TO -- [algo/blast/unit_tests/api] rps_unit_test (real 200.20, user 0.18, sys 0.10) -ERR [201] -- [algo/blast/unit_tests/api] blasthits_unit_test (real 110.74, user 0.37, sys 0.07) -ERR [139] -- [algo/blast/unit_tests/api] linkhsp_unit_test (real 110.46, user 0.13, sys 0.09) -TO -- [algo/blast/unit_tests/api] blastengine_unit_test (real 200.17, user 0.19, sys 0.08) -TO -- [algo/blast/unit_tests/api] ntscan_unit_test (real 200.17, user 0.15, sys 0.08) -TO -- [algo/blast/unit_tests/api] aascan_unit_test (real 200.16, user 0.19, sys 0.06) -TO -- [algo/blast/unit_tests/api] remote_blast_unit_test (real 200.14, user 0.33, sys 0.08) -TO -- [algo/blast/unit_tests/api] blastfilter_unit_test (real 200.16, user 0.15, sys 0.06) -TO -- [algo/blast/unit_tests/api] blastoptions_unit_test (real 200.16, user 0.20, sys 0.08) -TO -- [algo/blast/unit_tests/api] bl2seq_unit_test (real 200.14, user 0.15, sys 0.06) -TO -- [algo/blast/unit_tests/api] rmblast_traceback_unit_test (real 200.17, user 0.17, sys 0.05) - - -====================================================================== -align_format_unit_test -====================================================================== - -3903698/000/0000/PB EE3890D28F797831 0001/0001 2025-10-21T14:24:03.199564 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/objtools/align_format/unit_test/align_format_unit_test -3903698/000/0000/PB EE3890D28F797831 0002/0002 2025-10-21T14:24:03.199843 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/objtools/align_format/unit_test/align_format_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 10 test cases... -3903698/000/0001/RB EE3890D28F797831 0003/0003 2025-10-21T14:24:03.201659 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-start test_name=RemoteDeflineInfo&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3903698/000/0001/R EE3890D28F797831 0004/0004 2025-10-21T14:24:03.214921 codethink04-arm64 UNK_CLIENT EE3890D28F797831_0001SID align_format_unit_test extra ncbi_phid=EE3890D28F7978310000000000010001 -3903698/000/0001/R EE3890D28F797831 0005/0005 2025-10-21T14:24:03.214954 codethink04-arm64 UNK_CLIENT EE3890D28F797831_0001SID align_format_unit_test extra issued_subhit=1 -3903698/000/0001/R EE3890D28F797831 0012/0012 2025-10-21T14:24:03.219924 codethink04-arm64 UNK_CLIENT EE3890D28F797831_0001SID align_format_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -3903698/000/0001/R EE3890D28F797831 0013/0013 2025-10-21T14:24:03.219948 codethink04-arm64 UNK_CLIENT EE3890D28F797831_0001SID align_format_unit_test Error: UNIT_TEST "showdefline_unit_test.cpp", line 144: showdefline::RemoteDeflineInfo_invoker() --- Uncaught exception in "RemoteDeflineInfo"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -3903698/000/0001/RE EE3890D28F797831 0015/0015 2025-10-21T14:24:03.220708 codethink04-arm64 UNK_CLIENT EE3890D28F797831_0001SID align_format_unit_test request-stop 500 0.019040107 0 0 -unknown location(0): fatal error: in "showdefline/RemoteDeflineInfo": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp(144): last checkpoint: "RemoteDeflineInfo" entry. -3903698/000/0002/RB EE3890D28F797831 0016/0016 2025-10-21T14:24:03.221165 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-start test_name=TestSimpleAlignment_RmtBlastDBLoader&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3903698/000/0002/R EE3890D28F797831 0017/0017 2025-10-21T14:24:03.222645 codethink04-arm64 UNK_CLIENT EE3890D28F797831_0002SID align_format_unit_test extra ncbi_phid=EE3890D28F7978310000000000020002 -3903698/000/0002/R EE3890D28F797831 0018/0018 2025-10-21T14:24:03.222665 codethink04-arm64 UNK_CLIENT EE3890D28F797831_0002SID align_format_unit_test extra issued_subhit=1 -3903698/000/0002/R EE3890D28F797831 0025/0025 2025-10-21T14:24:03.223053 codethink04-arm64 UNK_CLIENT EE3890D28F797831_0002SID align_format_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -3903698/000/0002/R EE3890D28F797831 0026/0026 2025-10-21T14:24:03.223071 codethink04-arm64 UNK_CLIENT EE3890D28F797831_0002SID align_format_unit_test Error: UNIT_TEST "showalign_unit_test.cpp", line 223: showalign::TestSimpleAlignment_RmtBlastDBLoader_invoker() --- Uncaught exception in "TestSimpleAlignment_RmtBlastDBLoader"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -3903698/000/0002/RE EE3890D28F797831 0028/0028 2025-10-21T14:24:03.223111 codethink04-arm64 UNK_CLIENT EE3890D28F797831_0002SID align_format_unit_test request-stop 500 0.001953125 0 0 -unknown location(0): fatal error: in "showalign/TestSimpleAlignment_RmtBlastDBLoader": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp(225): last checkpoint -3903698/000/0003/RB EE3890D28F797831 0029/0029 2025-10-21T14:24:03.223524 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-start test_name=TestLargeGi&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3903698/000/0003/RE EE3890D28F797831 0030/0030 2025-10-21T14:24:03.246152 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-stop 200 0.022621154 0 0 -3903698/000/0004/RB EE3890D28F797831 0031/0031 2025-10-21T14:24:03.246543 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-start test_name=VecscreenDisplay&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3903698/000/0004/RE EE3890D28F797831 0032/0032 2025-10-21T14:24:03.253810 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-stop 200 0.007252931 0 0 -3903698/000/0005/RB EE3890D28F797831 0033/0033 2025-10-21T14:24:03.254210 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-start test_name=TestFastaPlusGaps&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3903698/000/0005/RE EE3890D28F797831 0034/0034 2025-10-21T14:24:03.444614 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-stop 200 0.190390110 0 0 -3903698/000/0006/RB EE3890D28F797831 0035/0035 2025-10-21T14:24:03.445015 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-start test_name=TestClustalW&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3903698/000/0006/RE EE3890D28F797831 0036/0036 2025-10-21T14:24:03.459786 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-stop 200 0.014755010 0 0 -3903698/000/0007/RB EE3890D28F797831 0037/0037 2025-10-21T14:24:03.460202 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-start test_name=TestPhylipSequential&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3903698/000/0007/RE EE3890D28F797831 0038/0038 2025-10-21T14:24:03.483030 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-stop 200 0.022816896 0 0 -3903698/000/0008/RB EE3890D28F797831 0039/0039 2025-10-21T14:24:03.483445 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-start test_name=TestPhylipInterleaved&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3903698/000/0008/RE EE3890D28F797831 0040/0040 2025-10-21T14:24:03.498356 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-stop 200 0.014898061 0 0 -3903698/000/0009/RB EE3890D28F797831 0041/0041 2025-10-21T14:24:03.498762 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-start test_name=TestNexus&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3903698/000/0009/RE EE3890D28F797831 0042/0042 2025-10-21T14:24:03.512976 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-stop 200 0.014199018 0 0 -3903698/000/0010/RB EE3890D28F797831 0043/0043 2025-10-21T14:24:03.513421 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-start test_name=TestRejectNexusWithNoAlignType&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3903698/000/0010/RE EE3890D28F797831 0044/0044 2025-10-21T14:24:03.519117 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test request-stop 200 0.005685091 0 0 - -*** Skipped 12 test(s) -*** 2 failures are detected in the test module "Master Test Suite" -Executed 10 test cases. -3903698/000/0000/P EE3890D28F797831 0045/0045 2025-10-21T14:24:03.532959 codethink04-arm64 UNK_CLIENT UNK_SESSION align_format_unit_test stop 201 0.341213941 -real 0.49 -user 0.33 -sys 0.04 -Start time : 10/21/2025 14:24:03 -Stop time : 10/21/2025 14:24:03 -Load averages: 27.29 44.25 39.19 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 201 - - -====================================================================== -blastinput_unit_test -====================================================================== - -3904503/000/0000/PB EE3893F78F797881 0001/0001 2025-10-21T14:24:08.875005 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test/blastinput_unit_test -3904503/000/0000/PB EE3893F78F797881 0002/0002 2025-10-21T14:24:08.875212 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/blastinput/unit_test/blastinput_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 77 test cases... -3904503/000/0001/RB EE3893F78F797881 0003/0003 2025-10-21T14:24:08.877390 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=TestSmallDubiousSequences&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0001/RE EE3893F78F797881 0007/0007 2025-10-21T14:24:08.878879 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.001492977 0 0 -3904503/000/0002/RB EE3893F78F797881 0008/0008 2025-10-21T14:24:08.879308 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadFastaWithDefline_MismatchProtNucl&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0002/RE EE3893F78F797881 0010/0010 2025-10-21T14:24:08.879578 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000273942 0 0 -3904503/000/0003/RB EE3893F78F797881 0011/0011 2025-10-21T14:24:08.879863 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadFastaWithDefline_MismatchNuclProt&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0003/RE EE3893F78F797881 0013/0013 2025-10-21T14:24:08.880039 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000175952 0 0 -3904503/000/0004/RB EE3893F78F797881 0014/0014 2025-10-21T14:24:08.880294 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadFastaWithDeflineProtein_Single&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0004/RE EE3893F78F797881 0015/0015 2025-10-21T14:24:08.880533 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000240087 0 0 -3904503/000/0005/RB EE3893F78F797881 0016/0016 2025-10-21T14:24:08.880762 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=RawFastaWithSpaces&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0005/RE EE3893F78F797881 0017/0017 2025-10-21T14:24:08.880930 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000168085 0 0 -3904503/000/0006/RB EE3893F78F797881 0018/0018 2025-10-21T14:24:08.881258 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadProteinWithGaps&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0006/RE EE3893F78F797881 0019/0019 2025-10-21T14:24:08.881679 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000419855 0 0 -3904503/000/0007/RB EE3893F78F797881 0020/0020 2025-10-21T14:24:08.882032 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=RawFastaNoSpaces&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0007/RE EE3893F78F797881 0021/0021 2025-10-21T14:24:08.882221 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000190019 0 0 -3904503/000/0008/RB EE3893F78F797881 0022/0022 2025-10-21T14:24:08.882525 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=RawFastaNoSpaces_UpperCaseWithN_ReadDeltaSeq&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0008/RE EE3893F78F797881 0023/0023 2025-10-21T14:24:08.882739 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000216007 0 0 -3904503/000/0009/RB EE3893F78F797881 0024/0024 2025-10-21T14:24:08.882979 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadGenbankReport&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0009/RE EE3893F78F797881 0036/0036 2025-10-21T14:24:08.883298 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000319004 0 0 -3904503/000/0010/RB EE3893F78F797881 0037/0037 2025-10-21T14:24:08.883642 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadInvalidSeqId&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0010/RE EE3893F78F797881 0039/0039 2025-10-21T14:24:08.887460 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.003810167 0 0 -3904503/000/0011/RB EE3893F78F797881 0040/0040 2025-10-21T14:24:08.887826 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadBadUserInput&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0011/RE EE3893F78F797881 0041/0041 2025-10-21T14:24:08.888553 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000720977 0 0 -3904503/000/0012/RB EE3893F78F797881 0042/0042 2025-10-21T14:24:08.888985 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadEmptyUserInput&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0012/RE EE3893F78F797881 0044/0044 2025-10-21T14:24:08.889093 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000111103 0 0 -3904503/000/0013/RB EE3893F78F797881 0045/0045 2025-10-21T14:24:08.889335 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadSingleFasta_WithTitle&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0013/RE EE3893F78F797881 0046/0046 2025-10-21T14:24:08.889555 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000220060 0 0 -3904503/000/0014/RB EE3893F78F797881 0047/0047 2025-10-21T14:24:08.889803 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=SingleSequenceString_CFastaReaderNoNewLineAfterSeq&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0014/RE EE3893F78F797881 0048/0048 2025-10-21T14:24:08.889855 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000055074 0 0 -3904503/000/0015/RB EE3893F78F797881 0049/0049 2025-10-21T14:24:08.890050 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=SingleSequenceString_CFastaReaderWithNewLines&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0015/RE EE3893F78F797881 0050/0050 2025-10-21T14:24:08.890083 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000033140 0 0 -3904503/000/0016/RB EE3893F78F797881 0051/0051 2025-10-21T14:24:08.890269 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=SingleSequenceString_CFastaReaderNoDeflineNoNewLines&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0016/RE EE3893F78F797881 0052/0052 2025-10-21T14:24:08.890300 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000031948 0 0 -3904503/000/0017/RB EE3893F78F797881 0053/0053 2025-10-21T14:24:08.890486 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=SingleSequenceString_NoNewLineAfterSeq&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0017/RE EE3893F78F797881 0054/0054 2025-10-21T14:24:08.890754 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000266075 0 0 -3904503/000/0018/RB EE3893F78F797881 0055/0055 2025-10-21T14:24:08.890991 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=SingleSequenceString_WithNewLines&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0018/RE EE3893F78F797881 0056/0056 2025-10-21T14:24:08.891134 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000144004 0 0 -3904503/000/0019/RB EE3893F78F797881 0057/0057 2025-10-21T14:24:08.891388 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=SingleSequenceString_NoDeflineNoNewLines&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0019/RE EE3893F78F797881 0058/0058 2025-10-21T14:24:08.891559 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000172853 0 0 -3904503/000/0020/RB EE3893F78F797881 0059/0059 2025-10-21T14:24:08.891795 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadEmptyUserInput_OnlyTitle&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0020/RE EE3893F78F797881 0064/0064 2025-10-21T14:24:08.894073 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.002269029 0 0 -3904503/000/0021/RB EE3893F78F797881 0065/0065 2025-10-21T14:24:08.894444 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadMultipleSequencesFromSequencer&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0021/RE EE3893F78F797881 0066/0066 2025-10-21T14:24:08.897656 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.003200054 0 0 -3904503/000/0022/RB EE3893F78F797881 0067/0067 2025-10-21T14:24:08.898030 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadMultipleSequencesFromSequencerParseLocalIds&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0022/RE EE3893F78F797881 0068/0068 2025-10-21T14:24:08.904985 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.006940126 0 0 -3904503/000/0023/RB EE3893F78F797881 0069/0069 2025-10-21T14:24:08.905502 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadSequenceWithlclID&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0023/RE EE3893F78F797881 0070/0070 2025-10-21T14:24:08.905861 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000360965 0 0 -3904503/000/0024/RB EE3893F78F797881 0071/0071 2025-10-21T14:24:08.906173 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadMultipleSequences_OneEmpty&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0024/RE EE3893F78F797881 0072/0072 2025-10-21T14:24:08.906540 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000365018 0 0 -3904503/000/0025/RB EE3893F78F797881 0073/0073 2025-10-21T14:24:08.906810 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadMultipleTis&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0025/RE EE3893F78F797881 0074/0074 2025-10-21T14:24:09.081384 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.174561977 0 0 -3904503/000/0026/RB EE3893F78F797881 0075/0075 2025-10-21T14:24:09.081753 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadSingleTi&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0026/RE EE3893F78F797881 0076/0076 2025-10-21T14:24:09.082834 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.001075029 0 0 -3904503/000/0027/RB EE3893F78F797881 0077/0077 2025-10-21T14:24:09.083211 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadAccessionsAndGisWithNewLines&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0027/R EE3893F78F797881 0078/0078 2025-10-21T14:24:09.088436 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test extra ncbi_phid=EE3893F78F79788100000000001B0001 -3904503/000/0027/R EE3893F78F797881 0079/0079 2025-10-21T14:24:09.088477 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test extra issued_subhit=1 -3904503/000/0027/R EE3893F78F797881 0080/0080 2025-10-21T14:24:09.088946 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test extra issued_subhit=2 -3904503/000/0027/R EE3893F78F797881 0081/0081 2025-10-21T14:24:09.089066 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3904503/000/0027/R EE3893F78F797881 0082/0082 2025-10-21T14:24:09.089083 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3904503/000/0027/R EE3893F78F797881 0083/0083 2025-10-21T14:24:09.089096 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3904503/000/0027/R EE3893F78F797881 0084/0084 2025-10-21T14:24:09.089106 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3904503/000/0027/R EE3893F78F797881 0085/0085 2025-10-21T14:24:09.089116 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3904503/000/0027/R EE3893F78F797881 0086/0086 2025-10-21T14:24:09.090482 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test extra issued_subhit=3 -3904503/000/0027/R EE3893F78F797881 0087/0087 2025-10-21T14:24:09.090746 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test extra issued_subhit=4 -3904503/000/0027/R EE3893F78F797881 0088/0088 2025-10-21T14:24:09.090868 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3904503/000/0027/R EE3893F78F797881 0089/0089 2025-10-21T14:24:09.090883 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3904503/000/0027/R EE3893F78F797881 0090/0090 2025-10-21T14:24:09.090894 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3904503/000/0027/R EE3893F78F797881 0091/0091 2025-10-21T14:24:09.090904 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3904503/000/0027/R EE3893F78F797881 0092/0092 2025-10-21T14:24:09.090921 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3904503/000/0027/R EE3893F78F797881 0093/0093 2025-10-21T14:24:09.091007 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test extra issued_subhit=5 -3904503/000/0027/R EE3893F78F797881 0094/0094 2025-10-21T14:24:10.091429 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test extra issued_subhit=6 -3904503/000/0027/R EE3893F78F797881 0095/0095 2025-10-21T14:24:10.091573 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3904503/000/0027/R EE3893F78F797881 0096/0096 2025-10-21T14:24:10.091589 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3904503/000/0027/R EE3893F78F797881 0097/0097 2025-10-21T14:24:10.091601 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3904503/000/0027/R EE3893F78F797881 0098/0098 2025-10-21T14:24:10.091611 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3904503/000/0027/R EE3893F78F797881 0099/0099 2025-10-21T14:24:10.091622 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3904503/000/0027/R EE3893F78F797881 0100/0100 2025-10-21T14:24:10.093710 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 -3904503/000/0027/R EE3893F78F797881 0101/0101 2025-10-21T14:24:10.093732 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: GENBANK(CLoaderException::eConnectionFailed) "reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|89161215)) -3904503/000/0027/R EE3893F78F797881 0102/0102 2025-10-21T14:24:10.093739 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test Error: UNIT_TEST "blastinput_unit_test.cpp", line 1577: blastinput::ReadAccessionsAndGisWithNewLines_invoker() --- Uncaught exception in "ReadAccessionsAndGisWithNewLines"(CLoaderException::eConnectionFailed) failed to send request: NULL (in GetRecords(gi|89161215)) -3904503/000/0027/RE EE3893F78F797881 0105/0105 2025-10-21T14:24:10.093783 codethink04-arm64 UNK_CLIENT EE3893F78F797891_0027SID blastinput_unit_test request-stop 500 1.010596990 0 0 -unknown location(0): fatal error: in "blastinput/ReadAccessionsAndGisWithNewLines": NCBI C++ Exception: - Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 - Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|89161215)) - -./c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp(1577): last checkpoint: "ReadAccessionsAndGisWithNewLines" entry. -3904503/000/0028/RB EE3893F78F797881 0106/0106 2025-10-21T14:24:10.094271 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadFastaWithDeflineProteinIntoBuffer_Single&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0028/RE EE3893F78F797881 0107/0107 2025-10-21T14:24:10.094617 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000346899 0 0 -3904503/000/0029/RB EE3893F78F797881 0108/0108 2025-10-21T14:24:10.094908 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=RangeBoth&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0029/RE EE3893F78F797881 0109/0109 2025-10-21T14:24:10.095076 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000168800 0 0 -3904503/000/0030/RB EE3893F78F797881 0110/0110 2025-10-21T14:24:10.095353 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=RangeStartOnly&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0030/RE EE3893F78F797881 0111/0111 2025-10-21T14:24:10.095500 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000148773 0 0 -3904503/000/0031/RB EE3893F78F797881 0112/0112 2025-10-21T14:24:10.095732 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=RangeInvalid_FromGreaterThanTo&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0031/RE EE3893F78F797881 0114/0114 2025-10-21T14:24:10.095890 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000159025 0 0 -3904503/000/0032/RB EE3893F78F797881 0115/0115 2025-10-21T14:24:10.096114 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=RangeInvalid_FromGreaterThanSequenceLength&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0032/RE EE3893F78F797881 0117/0117 2025-10-21T14:24:10.096258 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000144004 0 0 -3904503/000/0033/RB EE3893F78F797881 0118/0118 2025-10-21T14:24:10.096481 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=RangeInvalid_ToEqualThanSequenceLength&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0033/RE EE3893F78F797881 0119/0119 2025-10-21T14:24:10.096608 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000127077 0 0 -3904503/000/0034/RB EE3893F78F797881 0120/0120 2025-10-21T14:24:10.096831 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=RangeInvalid_ToGreaterThanSequenceLength&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0034/RE EE3893F78F797881 0121/0121 2025-10-21T14:24:10.096953 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000122070 0 0 -3904503/000/0035/RB EE3893F78F797881 0122/0122 2025-10-21T14:24:10.097177 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ParseDefline&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0035/RE EE3893F78F797881 0123/0123 2025-10-21T14:24:10.097379 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000200033 0 0 -3904503/000/0036/RB EE3893F78F797881 0124/0124 2025-10-21T14:24:10.097617 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=BadProtStrand&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0036/RE EE3893F78F797881 0126/0126 2025-10-21T14:24:10.097780 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000164031 0 0 -3904503/000/0037/RB EE3893F78F797881 0127/0127 2025-10-21T14:24:10.098008 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ReadFastaWithDeflineNucl_Multiple&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0037/RE EE3893F78F797881 0128/0128 2025-10-21T14:24:10.098181 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000173091 0 0 -3904503/000/0038/RB EE3893F78F797881 0129/0129 2025-10-21T14:24:10.098404 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=NuclStrand&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0038/RE EE3893F78F797881 0130/0130 2025-10-21T14:24:10.098640 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000234127 0 0 -3904503/000/0039/RB EE3893F78F797881 0131/0131 2025-10-21T14:24:10.098870 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=NuclLcaseMask_TSeqLocVector&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0039/RE EE3893F78F797881 0132/0132 2025-10-21T14:24:10.099060 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000189065 0 0 -3904503/000/0040/RB EE3893F78F797881 0133/0133 2025-10-21T14:24:10.099318 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=NuclLcaseMask_BlastQueryVector&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0040/RE EE3893F78F797881 0134/0134 2025-10-21T14:24:10.099759 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000438928 0 0 -3904503/000/0041/RB EE3893F78F797881 0135/0135 2025-10-21T14:24:10.099996 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=MultiSeq&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0041/RE EE3893F78F797881 0136/0136 2025-10-21T14:24:10.100660 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000662088 0 0 -3904503/000/0042/RB EE3893F78F797881 0137/0137 2025-10-21T14:24:10.100909 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=MultiRange&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0042/RE EE3893F78F797881 0138/0138 2025-10-21T14:24:10.101657 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000743865 0 0 -3904503/000/0043/RB EE3893F78F797881 0139/0139 2025-10-21T14:24:10.101912 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=MultiBatch&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0043/RE EE3893F78F797881 0140/0140 2025-10-21T14:24:10.102765 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000848054 0 0 -3904503/000/0044/RB EE3893F78F797881 0141/0141 2025-10-21T14:24:10.103040 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=NoDeflineExpected&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0044/RE EE3893F78F797881 0142/0142 2025-10-21T14:24:10.103405 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000361919 0 0 -3904503/000/0045/RB EE3893F78F797881 0143/0143 2025-10-21T14:24:10.103794 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=NoDeflineUnexpected&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0045/RE EE3893F78F797881 0144/0144 2025-10-21T14:24:10.104047 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000253915 0 0 -3904503/000/0046/RB EE3893F78F797881 0145/0145 2025-10-21T14:24:10.104541 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=RawFastaNoSpaces_UpperCaseWithN&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0046/RE EE3893F78F797881 0146/0146 2025-10-21T14:24:10.105014 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000473976 0 0 -3904503/000/0047/RB EE3893F78F797881 0147/0147 2025-10-21T14:24:10.105565 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ParseSequenceRange_EmptyRange&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0047/RE EE3893F78F797881 0148/0148 2025-10-21T14:24:10.105704 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000063896 0 0 -3904503/000/0048/RB EE3893F78F797881 0149/0149 2025-10-21T14:24:10.106094 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ParseSequenceRange_0BasedRange&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0048/RE EE3893F78F797881 0150/0150 2025-10-21T14:24:10.106134 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000046968 0 0 -3904503/000/0049/RB EE3893F78F797881 0151/0151 2025-10-21T14:24:10.106757 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ParseSequenceRange_InvalidDelimiter&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0049/RE EE3893F78F797881 0152/0152 2025-10-21T14:24:10.106799 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000051021 0 0 -3904503/000/0050/RB EE3893F78F797881 0153/0153 2025-10-21T14:24:10.107050 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ParseSequenceRange_IncompleteRange&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0050/RE EE3893F78F797881 0154/0154 2025-10-21T14:24:10.107095 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000049829 0 0 -3904503/000/0051/RB EE3893F78F797881 0155/0155 2025-10-21T14:24:10.107350 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ParseSequenceRange_InvalidRange&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0051/RE EE3893F78F797881 0156/0156 2025-10-21T14:24:10.107396 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000051021 0 0 -3904503/000/0052/RB EE3893F78F797881 0157/0157 2025-10-21T14:24:10.107591 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ParseSequenceRange_1BasedRange&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0052/RE EE3893F78F797881 0158/0158 2025-10-21T14:24:10.107608 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000017881 0 0 -3904503/000/0053/RB EE3893F78F797881 0159/0159 2025-10-21T14:24:10.107787 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=CheckQueryBatchSize&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0053/RE EE3893F78F797881 0160/0160 2025-10-21T14:24:10.107805 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000020027 0 0 -3904503/000/0054/RB EE3893F78F797881 0161/0161 2025-10-21T14:24:10.108018 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=TestPairedReadsFromFasta&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0054/RE EE3893F78F797881 0162/0162 2025-10-21T14:24:10.108728 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000703811 0 0 -3904503/000/0055/RB EE3893F78F797881 0163/0163 2025-10-21T14:24:10.108995 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=TestPairedReadsFromTwoFastaFiles&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0055/RE EE3893F78F797881 0164/0164 2025-10-21T14:24:10.109113 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000118970 0 0 -3904503/000/0056/RB EE3893F78F797881 0165/0165 2025-10-21T14:24:10.109351 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=TestSingleReadsFromFasta&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0056/RE EE3893F78F797881 0166/0166 2025-10-21T14:24:10.109424 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000075101 0 0 -3904503/000/0057/RB EE3893F78F797881 0167/0167 2025-10-21T14:24:10.109628 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=TestPairedReadsFromFastQ&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0057/RE EE3893F78F797881 0168/0168 2025-10-21T14:24:10.109719 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000092029 0 0 -3904503/000/0058/RB EE3893F78F797881 0169/0169 2025-10-21T14:24:10.109918 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=TestPairedReadsFromTwoFastQFiles&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0058/RE EE3893F78F797881 0170/0170 2025-10-21T14:24:10.110019 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000102043 0 0 -3904503/000/0059/RB EE3893F78F797881 0171/0171 2025-10-21T14:24:10.110221 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=TestPairedReadsFromASN1&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0059/RE EE3893F78F797881 0172/0172 2025-10-21T14:24:10.111760 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.001528024 0 0 -3904503/000/0060/RB EE3893F78F797881 0173/0173 2025-10-21T14:24:10.112120 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=TestPairedReadsFromTwoASN1Files&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0060/RE EE3893F78F797881 0174/0174 2025-10-21T14:24:10.112400 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000280857 0 0 -3904503/000/0061/RB EE3893F78F797881 0175/0175 2025-10-21T14:24:10.112656 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=TestPairedReadsFromFastC&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0061/RE EE3893F78F797881 0176/0176 2025-10-21T14:24:10.112758 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000102996 0 0 -3904503/000/0062/RB EE3893F78F797881 0177/0177 2025-10-21T14:24:10.112978 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=PsiBlastAppTestMatrix&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0062/RE EE3893F78F797881 0178/0178 2025-10-21T14:24:10.116304 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.003309011 0 0 -3904503/000/0063/RB EE3893F78F797881 0179/0179 2025-10-21T14:24:10.116696 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=RpsBlastCBS&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0063/RE EE3893F78F797881 0180/0180 2025-10-21T14:24:10.117020 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000324964 0 0 -3904503/000/0064/RB EE3893F78F797881 0181/0181 2025-10-21T14:24:10.117278 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=CheckMutuallyExclusiveOptions&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0064/RE EE3893F78F797881 0182/0182 2025-10-21T14:24:10.119686 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.002398014 0 0 -3904503/000/0065/RB EE3893F78F797881 0183/0183 2025-10-21T14:24:10.120076 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=CheckDiscoMegablast&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0065/RE EE3893F78F797881 0184/0184 2025-10-21T14:24:10.121625 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.001545190 0 0 -3904503/000/0066/RB EE3893F78F797881 0185/0185 2025-10-21T14:24:10.121957 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=CheckPercentIdentity&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0066/RE EE3893F78F797881 0186/0186 2025-10-21T14:24:10.122572 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000613927 0 0 -3904503/000/0067/RB EE3893F78F797881 0187/0187 2025-10-21T14:24:10.122845 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=CheckNoGreedyExtension&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0067/RE EE3893F78F797881 0188/0188 2025-10-21T14:24:10.125864 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.003005027 0 0 -3904503/000/0068/RB EE3893F78F797881 0189/0189 2025-10-21T14:24:10.126245 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=CheckCulling&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0068/RE EE3893F78F797881 0190/0190 2025-10-21T14:24:10.129215 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.002964973 0 0 -3904503/000/0069/RB EE3893F78F797881 0191/0191 2025-10-21T14:24:10.129572 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=CheckTaskArgs&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0069/RE EE3893F78F797881 0192/0192 2025-10-21T14:24:10.129601 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000035047 0 0 -3904503/000/0070/RB EE3893F78F797881 0193/0193 2025-10-21T14:24:10.129798 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=CheckQueryCoveragePercent&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0070/RE EE3893F78F797881 0194/0194 2025-10-21T14:24:10.130371 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000571012 0 0 -3904503/000/0071/RB EE3893F78F797881 0195/0195 2025-10-21T14:24:10.130616 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=CheckMaxHspsPerSubject&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0071/RE EE3893F78F797881 0196/0196 2025-10-21T14:24:10.131138 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000521898 0 0 -3904503/000/0072/RB EE3893F78F797881 0197/0197 2025-10-21T14:24:10.131419 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ConfigFileTest_RetrieveFromGenbank_TestSequenceData&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0072/R EE3893F78F797881 0198/0198 2025-10-21T14:24:10.132150 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test extra ncbi_phid=EE3893F78F7978810000000000480002 -3904503/000/0072/R EE3893F78F797881 0199/0199 2025-10-21T14:24:10.132169 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test extra issued_subhit=1 -3904503/000/0072/R EE3893F78F797881 0200/0200 2025-10-21T14:24:10.132424 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test extra issued_subhit=2 -3904503/000/0072/R EE3893F78F797881 0201/0201 2025-10-21T14:24:10.132568 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3904503/000/0072/R EE3893F78F797881 0202/0202 2025-10-21T14:24:10.132583 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3904503/000/0072/R EE3893F78F797881 0203/0203 2025-10-21T14:24:10.132595 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3904503/000/0072/R EE3893F78F797881 0204/0204 2025-10-21T14:24:10.132605 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3904503/000/0072/R EE3893F78F797881 0205/0205 2025-10-21T14:24:10.132614 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3904503/000/0072/R EE3893F78F797881 0206/0206 2025-10-21T14:24:10.132713 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test extra issued_subhit=3 -3904503/000/0072/R EE3893F78F797881 0207/0207 2025-10-21T14:24:10.132930 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test extra issued_subhit=4 -3904503/000/0072/R EE3893F78F797881 0208/0208 2025-10-21T14:24:10.133009 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3904503/000/0072/R EE3893F78F797881 0209/0209 2025-10-21T14:24:10.133021 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3904503/000/0072/R EE3893F78F797881 0210/0210 2025-10-21T14:24:10.133031 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3904503/000/0072/R EE3893F78F797881 0211/0211 2025-10-21T14:24:10.133039 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3904503/000/0072/R EE3893F78F797881 0212/0212 2025-10-21T14:24:10.133048 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3904503/000/0072/R EE3893F78F797881 0213/0213 2025-10-21T14:24:10.133117 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test extra issued_subhit=5 -3904503/000/0072/R EE3893F78F797881 0214/0214 2025-10-21T14:24:11.133538 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test extra issued_subhit=6 -3904503/000/0072/R EE3893F78F797881 0215/0215 2025-10-21T14:24:11.133685 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3904503/000/0072/R EE3893F78F797881 0216/0216 2025-10-21T14:24:11.133701 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3904503/000/0072/R EE3893F78F797881 0217/0217 2025-10-21T14:24:11.133715 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3904503/000/0072/R EE3893F78F797881 0218/0218 2025-10-21T14:24:11.133727 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3904503/000/0072/R EE3893F78F797881 0219/0219 2025-10-21T14:24:11.133737 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3904503/000/0072/R EE3893F78F797881 0220/0220 2025-10-21T14:24:11.134237 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 -3904503/000/0072/R EE3893F78F797881 0221/0221 2025-10-21T14:24:11.134249 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: GENBANK(CLoaderException::eConnectionFailed) "reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|129295)) -3904503/000/0072/R EE3893F78F797881 0222/0222 2025-10-21T14:24:11.134256 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test Error: UNIT_TEST "blast_scope_src_unit_test.cpp", line 262: blast_scope_src::ConfigFileTest_RetrieveFromGenbank_TestSequenceData_invoker() --- Uncaught exception in "ConfigFileTest_RetrieveFromGenbank_TestSequenceData"(CLoaderException::eConnectionFailed) failed to send request: NULL (in GetRecords(gi|129295)) -3904503/000/0072/RE EE3893F78F797881 0225/0225 2025-10-21T14:24:11.134289 codethink04-arm64 UNK_CLIENT EE3893F78F7978A1_0072SID blastinput_unit_test request-stop 500 1.002873897 0 0 -unknown location(0): fatal error: in "blast_scope_src/ConfigFileTest_RetrieveFromGenbank_TestSequenceData": NCBI C++ Exception: - Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 - Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|129295)) - -./c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp(277): last checkpoint -3904503/000/0073/RB EE3893F78F797881 0226/0226 2025-10-21T14:24:11.134664 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=ConfigFileTest_UseNoDataLoaders&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0073/RE EE3893F78F797881 0227/0227 2025-10-21T14:24:11.135258 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.000596046 0 0 -3904503/000/0074/RB EE3893F78F797881 0228/0228 2025-10-21T14:24:11.135538 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=RetrieveFromBlastDb&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0074/R EE3893F78F797881 0229/0229 2025-10-21T14:24:11.136614 codethink04-arm64 UNK_CLIENT EE3893F78F7978B1_0074SID blastinput_unit_test extra ncbi_phid=EE3893F78F79788100000000004A0003 -3904503/000/0074/R EE3893F78F797881 0230/0230 2025-10-21T14:24:11.136631 codethink04-arm64 UNK_CLIENT EE3893F78F7978B1_0074SID blastinput_unit_test extra issued_subhit=1 -3904503/000/0074/R EE3893F78F797881 0237/0237 2025-10-21T14:24:11.137251 codethink04-arm64 UNK_CLIENT EE3893F78F7978B1_0074SID blastinput_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -3904503/000/0074/R EE3893F78F797881 0238/0238 2025-10-21T14:24:11.137263 codethink04-arm64 UNK_CLIENT EE3893F78F7978B1_0074SID blastinput_unit_test Error: UNIT_TEST "blast_scope_src_unit_test.cpp", line 327: blast_scope_src::RetrieveFromBlastDb_invoker() --- Uncaught exception in "RetrieveFromBlastDb"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -3904503/000/0074/RE EE3893F78F797881 0240/0240 2025-10-21T14:24:11.137312 codethink04-arm64 UNK_CLIENT EE3893F78F7978B1_0074SID blastinput_unit_test request-stop 500 0.001776933 0 0 -unknown location(0): fatal error: in "blast_scope_src/RetrieveFromBlastDb": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp(319): last checkpoint -3904503/000/0075/RB EE3893F78F797881 0241/0241 2025-10-21T14:24:11.137676 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=RetrieveFromGenbank&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0075/R EE3893F78F797881 0242/0242 2025-10-21T14:24:11.138621 codethink04-arm64 UNK_CLIENT EE3893F78F7978B1_0075SID blastinput_unit_test extra ncbi_phid=EE3893F78F79788100000000004B0004 -3904503/000/0075/R EE3893F78F797881 0243/0243 2025-10-21T14:24:11.138636 codethink04-arm64 UNK_CLIENT EE3893F78F7978B1_0075SID blastinput_unit_test extra issued_subhit=1 -3904503/000/0075/R EE3893F78F797881 0250/0250 2025-10-21T14:24:11.139177 codethink04-arm64 UNK_CLIENT EE3893F78F7978B1_0075SID blastinput_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -3904503/000/0075/R EE3893F78F797881 0251/0251 2025-10-21T14:24:11.142029 codethink04-arm64 UNK_CLIENT EE3893F78F7978B1_0075SID blastinput_unit_test Error: UNIT_TEST "blast_scope_src_unit_test.cpp", line 332: blast_scope_src::RetrieveFromGenbank_invoker() --- Uncaught exception in "RetrieveFromGenbank"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -3904503/000/0075/RE EE3893F78F797881 0253/0253 2025-10-21T14:24:11.142083 codethink04-arm64 UNK_CLIENT EE3893F78F7978B1_0075SID blastinput_unit_test request-stop 500 0.004410028 0 0 -unknown location(0): fatal error: in "blast_scope_src/RetrieveFromGenbank": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp(319): last checkpoint -3904503/000/0076/RB EE3893F78F797881 0254/0254 2025-10-21T14:24:11.142472 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=InvalidBlastDatabase&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0076/R EE3893F78F797881 0255/0255 2025-10-21T14:24:11.143567 codethink04-arm64 UNK_CLIENT EE3893F78F7978B1_0076SID blastinput_unit_test extra ncbi_phid=EE3893F78F79788100000000004C0005 -3904503/000/0076/R EE3893F78F797881 0256/0256 2025-10-21T14:24:11.143585 codethink04-arm64 UNK_CLIENT EE3893F78F7978B1_0076SID blastinput_unit_test extra issued_subhit=1 -./c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp(385): error: in "blast_scope_src/InvalidBlastDatabase": check e.GetMsg().find(kExpectedMsg) != std::string::npos has failed -3904503/000/0076/RE EE3893F78F797881 0263/0263 2025-10-21T14:24:11.144200 codethink04-arm64 UNK_CLIENT EE3893F78F7978B1_0076SID blastinput_unit_test request-stop 500 0.001729965 0 0 -3904503/000/0077/RB EE3893F78F797881 0264/0264 2025-10-21T14:24:11.144541 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-start test_name=RetrieveSeqUsingPDBIds&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904503/000/0077/RE EE3893F78F797881 0265/0265 2025-10-21T14:24:11.145665 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test request-stop 200 0.001119136 0 0 - -*** Skipped 35 test(s) -*** 5 failures are detected in the test module "Master Test Suite" -Executed 77 test cases. -3904503/000/0000/P EE3893F78F797881 0266/0266 2025-10-21T14:24:11.152097 codethink04-arm64 UNK_CLIENT UNK_SESSION blastinput_unit_test stop 201 2.280585050 -real 2.41 -user 0.28 -sys 0.04 -Start time : 10/21/2025 14:24:08 -Stop time : 10/21/2025 14:24:11 -Load averages: 25.85 43.38 38.97 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 201 - - -====================================================================== -blast_format_unit_test -====================================================================== - -3904691/000/0000/PB EE3894B38F7978B1 0001/0001 2025-10-21T14:24:11.515039 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format/blast_format_unit_test -3904691/000/0000/PB EE3894B38F7978B1 0002/0002 2025-10-21T14:24:11.515262 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/blast_format/blast_format_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 7 test cases... -3904691/000/0001/RB EE3894B38F7978B1 0003/0003 2025-10-21T14:24:11.516965 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test request-start test_name=GetBlastDeflineFromGenbank&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904691/000/0001/R EE3894B38F7978B1 0004/0004 2025-10-21T14:24:11.517723 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test extra ncbi_phid=EE3894B38F7978B10000000000010001 -3904691/000/0001/R EE3894B38F7978B1 0005/0005 2025-10-21T14:24:11.517752 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test extra issued_subhit=1 -3904691/000/0001/R EE3894B38F7978B1 0006/0006 2025-10-21T14:24:11.518191 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test extra issued_subhit=2 -3904691/000/0001/R EE3894B38F7978B1 0007/0007 2025-10-21T14:24:11.518327 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3904691/000/0001/R EE3894B38F7978B1 0008/0008 2025-10-21T14:24:11.518355 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3904691/000/0001/R EE3894B38F7978B1 0009/0009 2025-10-21T14:24:11.518366 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3904691/000/0001/R EE3894B38F7978B1 0010/0010 2025-10-21T14:24:11.518377 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3904691/000/0001/R EE3894B38F7978B1 0011/0011 2025-10-21T14:24:11.518386 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3904691/000/0001/R EE3894B38F7978B1 0012/0012 2025-10-21T14:24:11.518590 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test extra issued_subhit=3 -3904691/000/0001/R EE3894B38F7978B1 0013/0013 2025-10-21T14:24:11.518787 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test extra issued_subhit=4 -3904691/000/0001/R EE3894B38F7978B1 0014/0014 2025-10-21T14:24:11.518880 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3904691/000/0001/R EE3894B38F7978B1 0015/0015 2025-10-21T14:24:11.518893 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3904691/000/0001/R EE3894B38F7978B1 0016/0016 2025-10-21T14:24:11.518911 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3904691/000/0001/R EE3894B38F7978B1 0017/0017 2025-10-21T14:24:11.518921 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3904691/000/0001/R EE3894B38F7978B1 0018/0018 2025-10-21T14:24:11.518928 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3904691/000/0001/R EE3894B38F7978B1 0019/0019 2025-10-21T14:24:11.519005 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test extra issued_subhit=5 -3904691/000/0001/R EE3894B38F7978B1 0020/0020 2025-10-21T14:24:12.519441 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test extra issued_subhit=6 -3904691/000/0001/R EE3894B38F7978B1 0021/0021 2025-10-21T14:24:12.519592 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3904691/000/0001/R EE3894B38F7978B1 0022/0022 2025-10-21T14:24:12.519609 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3904691/000/0001/R EE3894B38F7978B1 0023/0023 2025-10-21T14:24:12.519621 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3904691/000/0001/R EE3894B38F7978B1 0024/0024 2025-10-21T14:24:12.519631 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3904691/000/0001/R EE3894B38F7978B1 0025/0025 2025-10-21T14:24:12.519643 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3904691/000/0001/R EE3894B38F7978B1 0026/0026 2025-10-21T14:24:12.519902 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 -3904691/000/0001/R EE3894B38F7978B1 0027/0027 2025-10-21T14:24:12.519914 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: GENBANK(CLoaderException::eConnectionFailed) "reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|555)) -3904691/000/0001/R EE3894B38F7978B1 0028/0028 2025-10-21T14:24:12.519921 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test Error: BLASTFORMAT "blastfmtutil_unit_test.cpp", line 84: blastfmtutil::GetBlastDeflineFromGenbank_invoker() --- Uncaught exception in "GetBlastDeflineFromGenbank"(CLoaderException::eConnectionFailed) failed to send request: NULL (in GetRecords(gi|555)) -3904691/000/0001/RE EE3894B38F7978B1 0031/0031 2025-10-21T14:24:12.519977 codethink04-arm64 UNK_CLIENT EE3894B38F7978B1_0001SID blast_format_unit_test request-stop 500 1.003021955 0 0 -unknown location(0): fatal error: in "blastfmtutil/GetBlastDeflineFromGenbank": NCBI C++ Exception: - Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 - Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|555)) - -./c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp(84): last checkpoint: "GetBlastDeflineFromGenbank" entry. -3904691/000/0002/RB EE3894B38F7978B1 0032/0032 2025-10-21T14:24:12.520387 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test request-start test_name=GetAlnScoresAndGetScoreString&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904691/000/0002/RE EE3894B38F7978B1 0033/0033 2025-10-21T14:24:12.526690 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test request-stop 200 0.006295919 0 0 -3904691/000/0003/RB EE3894B38F7978B1 0034/0034 2025-10-21T14:24:12.527092 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test request-start test_name=BuildArchiveWithDB&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904691/000/0003/RE EE3894B38F7978B1 0035/0035 2025-10-21T14:24:12.531972 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test request-stop 200 0.004868984 0 0 -3904691/000/0004/RB EE3894B38F7978B1 0036/0036 2025-10-21T14:24:12.532369 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test request-start test_name=BuildArchiveWithBl2seq&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904691/000/0004/RE EE3894B38F7978B1 0037/0037 2025-10-21T14:24:12.533403 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test request-stop 200 0.001025915 0 0 -3904691/000/0005/RB EE3894B38F7978B1 0038/0038 2025-10-21T14:24:12.533780 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test request-start test_name=BuildArchiveWithTaxidList&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904691/000/0005/RE EE3894B38F7978B1 0039/0039 2025-10-21T14:24:12.534752 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test request-stop 200 0.000967025 0 0 -3904691/000/0006/RB EE3894B38F7978B1 0040/0040 2025-10-21T14:24:12.535125 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test request-start test_name=BlastAsyncFormatFinalizeThrow&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904691/000/0006/RE EE3894B38F7978B1 0041/0041 2025-10-21T14:24:12.535916 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test request-stop 200 0.000782966 0 0 -3904691/000/0007/RB EE3894B38F7978B1 0042/0042 2025-10-21T14:24:12.536289 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test request-start test_name=BlastAsyncFormatDuplicateThrow&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904691/000/0007/RE EE3894B38F7978B1 0043/0043 2025-10-21T14:24:12.536480 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test request-stop 200 0.000190019 0 0 - -*** Skipped 9 test(s) -*** 1 failure is detected in the test module "Master Test Suite" -Executed 7 test cases. -3904691/000/0000/P EE3894B38F7978B1 0044/0044 2025-10-21T14:24:12.538940 codethink04-arm64 UNK_CLIENT UNK_SESSION blast_format_unit_test stop 201 1.029303073 -real 1.30 -user 0.14 -sys 0.04 -Start time : 10/21/2025 14:24:11 -Stop time : 10/21/2025 14:24:12 -Load averages: 25.85 43.38 38.97 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 201 - - -====================================================================== -bdbloader_unit_test -====================================================================== - -3904907/000/0000/PB EE38958B8F7978C1 0001/0001 2025-10-21T14:24:12.640311 codethink04-arm64 UNK_CLIENT UNK_SESSION bdbloader_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb/bdbloader_unit_test -3904907/000/0000/PB EE38958B8F7978C1 0002/0002 2025-10-21T14:24:12.640512 codethink04-arm64 UNK_CLIENT UNK_SESSION bdbloader_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/blastdb/bdbloader_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 6 test cases... -3904907/000/0001/RB EE38958B8F7978C1 0003/0003 2025-10-21T14:24:12.642204 codethink04-arm64 UNK_CLIENT UNK_SESSION bdbloader_unit_test request-start test_name=RetrieveGi555WithTimeOut_Remote&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904907/000/0001/R EE38958B8F7978C1 0004/0004 2025-10-21T14:24:12.643126 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0001SID bdbloader_unit_test extra ncbi_phid=EE38958B8F7978C10000000000010001 -3904907/000/0001/R EE38958B8F7978C1 0005/0005 2025-10-21T14:24:12.643151 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0001SID bdbloader_unit_test extra issued_subhit=1 -3904907/000/0001/R EE38958B8F7978C1 0012/0012 2025-10-21T14:24:12.643603 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0001SID bdbloader_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -3904907/000/0001/R EE38958B8F7978C1 0013/0013 2025-10-21T14:24:12.643621 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0001SID bdbloader_unit_test Error: BLASTDB "bdbloader_unit_test.cpp", line 156: bdbloader::RetrieveGi555WithTimeOut_Remote_invoker() --- Uncaught exception in "RetrieveGi555WithTimeOut_Remote"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -3904907/000/0001/RE EE38958B8F7978C1 0015/0015 2025-10-21T14:24:12.643658 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0001SID bdbloader_unit_test request-stop 500 0.001467943 0 0 -unknown location(0): fatal error: in "bdbloader/RetrieveGi555WithTimeOut_Remote": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp(156): last checkpoint: "RetrieveGi555WithTimeOut_Remote" entry. -3904907/000/0002/RB EE38958B8F7978C1 0016/0016 2025-10-21T14:24:12.644029 codethink04-arm64 UNK_CLIENT UNK_SESSION bdbloader_unit_test request-start test_name=RetrieveLargeProteinWithTimeOut_Remote&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904907/000/0002/R EE38958B8F7978C1 0017/0017 2025-10-21T14:24:12.805056 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0002SID bdbloader_unit_test extra ncbi_phid=EE38958B8F7978C10000000000020002 -3904907/000/0002/R EE38958B8F7978C1 0018/0018 2025-10-21T14:24:12.805083 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0002SID bdbloader_unit_test extra issued_subhit=1 -3904907/000/0002/R EE38958B8F7978C1 0025/0025 2025-10-21T14:24:12.805393 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0002SID bdbloader_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -3904907/000/0002/R EE38958B8F7978C1 0026/0026 2025-10-21T14:24:12.805410 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0002SID bdbloader_unit_test Error: BLASTDB "bdbloader_unit_test.cpp", line 200: bdbloader::RetrieveLargeProteinWithTimeOut_Remote_invoker() --- Uncaught exception in "RetrieveLargeProteinWithTimeOut_Remote"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -3904907/000/0002/RE EE38958B8F7978C1 0028/0028 2025-10-21T14:24:12.805455 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0002SID bdbloader_unit_test request-stop 500 0.161430835 0 0 -unknown location(0): fatal error: in "bdbloader/RetrieveLargeProteinWithTimeOut_Remote": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp(200): last checkpoint: "RetrieveLargeProteinWithTimeOut_Remote" entry. -3904907/000/0003/RB EE38958B8F7978C1 0029/0029 2025-10-21T14:24:12.805857 codethink04-arm64 UNK_CLIENT UNK_SESSION bdbloader_unit_test request-start test_name=RetrieveLargeNuclSequence_Remote&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904907/000/0003/R EE38958B8F7978C1 0030/0030 2025-10-21T14:24:12.806175 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0003SID bdbloader_unit_test extra ncbi_phid=EE38958B8F7978C10000000000030003 -3904907/000/0003/R EE38958B8F7978C1 0031/0031 2025-10-21T14:24:12.806188 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0003SID bdbloader_unit_test extra issued_subhit=1 -3904907/000/0003/R EE38958B8F7978C1 0038/0038 2025-10-21T14:24:12.806433 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0003SID bdbloader_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -3904907/000/0003/R EE38958B8F7978C1 0039/0039 2025-10-21T14:24:12.806446 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0003SID bdbloader_unit_test Error: BLASTDB "bdbloader_unit_test.cpp", line 236: bdbloader::RetrieveLargeNuclSequence_Remote_invoker() --- Uncaught exception in "RetrieveLargeNuclSequence_Remote"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -3904907/000/0003/RE EE38958B8F7978C1 0041/0041 2025-10-21T14:24:12.806474 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0003SID bdbloader_unit_test request-stop 500 0.000622034 0 0 -unknown location(0): fatal error: in "bdbloader/RetrieveLargeNuclSequence_Remote": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp(236): last checkpoint: "RetrieveLargeNuclSequence_Remote" entry. -3904907/000/0004/RB EE38958B8F7978C1 0042/0042 2025-10-21T14:24:12.806818 codethink04-arm64 UNK_CLIENT UNK_SESSION bdbloader_unit_test request-start test_name=RetrievePartsOfLargeChromosome_Remote&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904907/000/0004/R EE38958B8F7978C1 0043/0043 2025-10-21T14:24:12.807121 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0004SID bdbloader_unit_test extra ncbi_phid=EE38958B8F7978C10000000000040004 -3904907/000/0004/R EE38958B8F7978C1 0044/0044 2025-10-21T14:24:12.807132 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0004SID bdbloader_unit_test extra issued_subhit=1 -3904907/000/0004/R EE38958B8F7978C1 0051/0051 2025-10-21T14:24:12.807393 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0004SID bdbloader_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -3904907/000/0004/R EE38958B8F7978C1 0052/0052 2025-10-21T14:24:12.807409 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0004SID bdbloader_unit_test Error: BLASTDB "bdbloader_unit_test.cpp", line 305: bdbloader::RetrievePartsOfLargeChromosome_Remote_invoker() --- Uncaught exception in "RetrievePartsOfLargeChromosome_Remote"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -3904907/000/0004/RE EE38958B8F7978C1 0054/0054 2025-10-21T14:24:12.807433 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0004SID bdbloader_unit_test request-stop 500 0.000619173 0 0 -unknown location(0): fatal error: in "bdbloader/RetrievePartsOfLargeChromosome_Remote": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp(305): last checkpoint: "RetrievePartsOfLargeChromosome_Remote" entry. -3904907/000/0005/RB EE38958B8F7978C1 0055/0055 2025-10-21T14:24:12.807767 codethink04-arm64 UNK_CLIENT UNK_SESSION bdbloader_unit_test request-start test_name=RetrieveLargeChromosomeWithTimeOut_Remote&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904907/000/0005/R EE38958B8F7978C1 0056/0056 2025-10-21T14:24:12.808051 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0005SID bdbloader_unit_test extra ncbi_phid=EE38958B8F7978C10000000000050005 -3904907/000/0005/R EE38958B8F7978C1 0057/0057 2025-10-21T14:24:12.808063 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0005SID bdbloader_unit_test extra issued_subhit=1 -3904907/000/0005/R EE38958B8F7978C1 0064/0064 2025-10-21T14:24:12.808276 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0005SID bdbloader_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -3904907/000/0005/R EE38958B8F7978C1 0065/0065 2025-10-21T14:24:12.808289 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0005SID bdbloader_unit_test Error: BLASTDB "bdbloader_unit_test.cpp", line 341: bdbloader::RetrieveLargeChromosomeWithTimeOut_Remote_invoker() --- Uncaught exception in "RetrieveLargeChromosomeWithTimeOut_Remote"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -3904907/000/0005/RE EE38958B8F7978C1 0067/0067 2025-10-21T14:24:12.808313 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0005SID bdbloader_unit_test request-stop 500 0.000550031 0 0 -unknown location(0): fatal error: in "bdbloader/RetrieveLargeChromosomeWithTimeOut_Remote": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp(341): last checkpoint: "RetrieveLargeChromosomeWithTimeOut_Remote" entry. -3904907/000/0006/RB EE38958B8F7978C1 0068/0068 2025-10-21T14:24:12.808624 codethink04-arm64 UNK_CLIENT UNK_SESSION bdbloader_unit_test request-start test_name=TestDataNotFound_Remote&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3904907/000/0006/R EE38958B8F7978C1 0069/0069 2025-10-21T14:24:12.808899 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0006SID bdbloader_unit_test extra ncbi_phid=EE38958B8F7978C10000000000060006 -3904907/000/0006/R EE38958B8F7978C1 0070/0070 2025-10-21T14:24:12.808911 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0006SID bdbloader_unit_test extra issued_subhit=1 -3904907/000/0006/R EE38958B8F7978C1 0077/0077 2025-10-21T14:24:12.809129 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0006SID bdbloader_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -3904907/000/0006/R EE38958B8F7978C1 0078/0078 2025-10-21T14:24:12.809144 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0006SID bdbloader_unit_test Error: BLASTDB "bdbloader_unit_test.cpp", line 451: bdbloader::TestDataNotFound_Remote_invoker() --- Uncaught exception in "TestDataNotFound_Remote"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -3904907/000/0006/RE EE38958B8F7978C1 0080/0080 2025-10-21T14:24:12.809167 codethink04-arm64 UNK_CLIENT EE38958B8F7978C1_0006SID bdbloader_unit_test request-stop 500 0.000548124 0 0 -unknown location(0): fatal error: in "bdbloader/TestDataNotFound_Remote": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp(451): last checkpoint: "TestDataNotFound_Remote" entry. - -*** Skipped 6 test(s) -*** 6 failures are detected in the test module "Master Test Suite" -Executed 6 test cases. -3904907/000/0000/P EE38958B8F7978C1 0081/0081 2025-10-21T14:24:12.810699 codethink04-arm64 UNK_CLIENT UNK_SESSION bdbloader_unit_test stop 201 0.172587871 -real 0.21 -user 0.19 -sys 0.01 -Start time : 10/21/2025 14:24:12 -Stop time : 10/21/2025 14:24:12 -Load averages: 25.85 43.38 38.97 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 201 - - -====================================================================== -aalookup_unit_test -====================================================================== - -3905293/000/0000/PB EE38970D8F7978D1 0001/0001 2025-10-21T14:24:13.588127 codethink04-arm64 UNK_CLIENT UNK_SESSION aalookup_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/aalookup_unit_test -3905293/000/0000/PB EE38970D8F7978D1 0002/0002 2025-10-21T14:24:13.588307 codethink04-arm64 UNK_CLIENT UNK_SESSION aalookup_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/aalookup_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 7 test cases... -3905293/000/0001/RB EE38970D8F7978D1 0003/0003 2025-10-21T14:24:13.589926 codethink04-arm64 UNK_CLIENT UNK_SESSION aalookup_unit_test request-start test_name=BackboneIntegrityTest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3905293/000/0001/R EE38970D8F7978D1 0004/0004 2025-10-21T14:24:13.590562 codethink04-arm64 UNK_CLIENT UNK_SESSION aalookup_unit_test extra ncbi_phid=EE38970D8F7978D10000000000010001 -3905293/000/0001/R EE38970D8F7978D1 0005/0005 2025-10-21T14:24:13.590589 codethink04-arm64 UNK_CLIENT UNK_SESSION aalookup_unit_test extra issued_subhit=1 -3905293/000/0001/R EE38970D8F7978D1 0006/0006 2025-10-21T14:24:13.590996 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=2 -3905293/000/0001/R EE38970D8F7978D1 0007/0007 2025-10-21T14:24:13.591123 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3905293/000/0001/R EE38970D8F7978D1 0008/0008 2025-10-21T14:24:13.591150 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3905293/000/0001/R EE38970D8F7978D1 0009/0009 2025-10-21T14:24:13.591161 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3905293/000/0001/R EE38970D8F7978D1 0010/0010 2025-10-21T14:24:13.591172 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3905293/000/0001/R EE38970D8F7978D1 0011/0011 2025-10-21T14:24:13.591181 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3905293/000/0001/R EE38970D8F7978D1 0012/0012 2025-10-21T14:24:13.591389 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=3 -3905293/000/0001/R EE38970D8F7978D1 0013/0013 2025-10-21T14:24:13.591587 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=4 -3905293/000/0001/R EE38970D8F7978D1 0014/0014 2025-10-21T14:24:13.591676 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3905293/000/0001/R EE38970D8F7978D1 0015/0015 2025-10-21T14:24:13.591688 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3905293/000/0001/R EE38970D8F7978D1 0016/0016 2025-10-21T14:24:13.591705 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3905293/000/0001/R EE38970D8F7978D1 0017/0017 2025-10-21T14:24:13.591714 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3905293/000/0001/R EE38970D8F7978D1 0018/0018 2025-10-21T14:24:13.591721 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3905293/000/0001/R EE38970D8F7978D1 0019/0019 2025-10-21T14:24:13.591787 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=5 -3905293/000/0001/R EE38970D8F7978D1 0020/0020 2025-10-21T14:24:14.592171 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=6 -3905293/000/0001/R EE38970D8F7978D1 0021/0021 2025-10-21T14:24:14.592317 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3905293/000/0001/R EE38970D8F7978D1 0022/0022 2025-10-21T14:24:14.592331 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3905293/000/0001/R EE38970D8F7978D1 0023/0023 2025-10-21T14:24:14.592342 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3905293/000/0001/R EE38970D8F7978D1 0024/0024 2025-10-21T14:24:14.592353 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3905293/000/0001/R EE38970D8F7978D1 0025/0025 2025-10-21T14:24:14.592363 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3905293/000/0001/R EE38970D8F7978D1 0026/0026 2025-10-21T14:24:14.592475 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=7 -3905293/000/0001/R EE38970D8F7978D1 0027/0027 2025-10-21T14:24:17.092912 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=8 -3905293/000/0001/R EE38970D8F7978D1 0028/0028 2025-10-21T14:24:17.093057 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3905293/000/0001/R EE38970D8F7978D1 0029/0029 2025-10-21T14:24:17.093071 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3905293/000/0001/R EE38970D8F7978D1 0030/0030 2025-10-21T14:24:17.093088 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3905293/000/0001/R EE38970D8F7978D1 0031/0031 2025-10-21T14:24:17.093116 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3905293/000/0001/R EE38970D8F7978D1 0032/0032 2025-10-21T14:24:17.093127 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3905293/000/0001/R EE38970D8F7978D1 0033/0033 2025-10-21T14:24:17.093239 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=9 -3905293/000/0001/R EE38970D8F7978D1 0034/0034 2025-10-21T14:24:21.843630 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=10 -3905293/000/0001/R EE38970D8F7978D1 0035/0035 2025-10-21T14:24:21.843787 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3905293/000/0001/R EE38970D8F7978D1 0036/0036 2025-10-21T14:24:21.843803 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3905293/000/0001/R EE38970D8F7978D1 0037/0037 2025-10-21T14:24:21.843814 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3905293/000/0001/R EE38970D8F7978D1 0038/0038 2025-10-21T14:24:21.843824 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3905293/000/0001/R EE38970D8F7978D1 0039/0039 2025-10-21T14:24:21.843834 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3905293/000/0001/R EE38970D8F7978D1 0040/0040 2025-10-21T14:24:21.844119 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=11 -3905293/000/0001/R EE38970D8F7978D1 0041/0041 2025-10-21T14:24:29.969526 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=12 -3905293/000/0001/R EE38970D8F7978D1 0042/0042 2025-10-21T14:24:29.969663 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3905293/000/0001/R EE38970D8F7978D1 0043/0043 2025-10-21T14:24:29.969678 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3905293/000/0001/R EE38970D8F7978D1 0044/0044 2025-10-21T14:24:29.969696 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3905293/000/0001/R EE38970D8F7978D1 0045/0045 2025-10-21T14:24:29.969706 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3905293/000/0001/R EE38970D8F7978D1 0046/0046 2025-10-21T14:24:29.969716 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3905293/000/0001/R EE38970D8F7978D1 0047/0047 2025-10-21T14:24:29.969845 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=13 -3905293/000/0001/R EE38970D8F7978D1 0048/0048 2025-10-21T14:24:43.157748 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=14 -3905293/000/0001/R EE38970D8F7978D1 0049/0049 2025-10-21T14:24:43.157889 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3905293/000/0001/R EE38970D8F7978D1 0050/0050 2025-10-21T14:24:43.157906 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3905293/000/0001/R EE38970D8F7978D1 0051/0051 2025-10-21T14:24:43.157920 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3905293/000/0001/R EE38970D8F7978D1 0052/0052 2025-10-21T14:24:43.157931 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3905293/000/0001/R EE38970D8F7978D1 0053/0053 2025-10-21T14:24:43.157941 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3905293/000/0001/R EE38970D8F7978D1 0054/0054 2025-10-21T14:24:43.158065 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=15 -3905293/000/0001/R EE38970D8F7978D1 0055/0055 2025-10-21T14:25:03.939704 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=16 -3905293/000/0001/R EE38970D8F7978D1 0056/0056 2025-10-21T14:25:03.939871 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3905293/000/0001/R EE38970D8F7978D1 0057/0057 2025-10-21T14:25:03.939887 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3905293/000/0001/R EE38970D8F7978D1 0058/0058 2025-10-21T14:25:03.939903 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3905293/000/0001/R EE38970D8F7978D1 0059/0059 2025-10-21T14:25:03.939914 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3905293/000/0001/R EE38970D8F7978D1 0060/0060 2025-10-21T14:25:03.939924 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3905293/000/0001/R EE38970D8F7978D1 0061/0061 2025-10-21T14:25:03.940057 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=17 -3905293/000/0001/R EE38970D8F7978D1 0062/0062 2025-10-21T14:25:33.940462 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=18 -3905293/000/0001/R EE38970D8F7978D1 0063/0063 2025-10-21T14:25:33.940610 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3905293/000/0001/R EE38970D8F7978D1 0064/0064 2025-10-21T14:25:33.940625 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3905293/000/0001/R EE38970D8F7978D1 0065/0065 2025-10-21T14:25:33.940636 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3905293/000/0001/R EE38970D8F7978D1 0066/0066 2025-10-21T14:25:33.940645 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3905293/000/0001/R EE38970D8F7978D1 0067/0067 2025-10-21T14:25:33.940656 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3905293/000/0001/R EE38970D8F7978D1 0068/0068 2025-10-21T14:25:33.940784 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=19 -3905293/000/0001/R EE38970D8F7978D1 0069/0069 2025-10-21T14:26:03.941465 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test extra issued_subhit=20 -3905293/000/0001/R EE38970D8F7978D1 0070/0070 2025-10-21T14:26:03.941721 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3905293/000/0001/R EE38970D8F7978D1 0071/0071 2025-10-21T14:26:03.941754 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3905293/000/0001/R EE38970D8F7978D1 0072/0072 2025-10-21T14:26:04.038763 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3905293/000/0001/R EE38970D8F7978D1 0073/0073 2025-10-21T14:26:04.038811 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3905293/000/0001/R EE38970D8F7978D1 0074/0074 2025-10-21T14:26:04.038834 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3905293/000/0001/R EE38970D8F7978D1 0075/0075 2025-10-21T14:26:04.040033 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 -3905293/000/0001/R EE38970D8F7978D1 0076/0076 2025-10-21T14:26:04.040065 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: GENBANK(CLoaderException::eConnectionFailed) "reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|129295)) -3905293/000/0001/R EE38970D8F7978D1 0077/0077 2025-10-21T14:26:04.040082 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test Error: BLAST "aalookup_unit_test.cpp", line 204: aalookup::BackboneIntegrityTest_invoker() --- Uncaught exception in "BackboneIntegrityTest"(CLoaderException::eConnectionFailed) failed to send request: NULL (in GetRecords(gi|129295)) -3905293/000/0001/RE EE38970D8F7978D1 0080/0080 2025-10-21T14:26:04.040481 codethink04-arm64 UNK_CLIENT EE38970D8F7978D1_0001SID aalookup_unit_test request-stop 500 110.450555086 0 0 -unknown location(0): fatal error: in "aalookup/BackboneIntegrityTest": NCBI C++ Exception: - Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 - Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|129295)) - -./c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp(204): last checkpoint: "BackboneIntegrityTest" entry. -3905293/000/0002/RB EE38970D8F7978D1 0081/0081 2025-10-21T14:26:04.041242 codethink04-arm64 UNK_CLIENT UNK_SESSION aalookup_unit_test request-start test_name=DebruijnSequenceTest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3905293/000/0002/RE EE38970D8F7978D1 0082/0082 2025-10-21T14:26:04.077591 codethink04-arm64 UNK_CLIENT UNK_SESSION aalookup_unit_test request-stop 200 0.036334991 0 0 -3905293/000/0003/RB EE38970D8F7978D1 0083/0083 2025-10-21T14:26:04.078231 codethink04-arm64 UNK_CLIENT UNK_SESSION aalookup_unit_test request-start test_name=NeighboringWordsTest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3905293/000/0003/RE EE38970D8F7978D1 0084/0084 2025-10-21T14:26:05.807552 codethink04-arm64 UNK_CLIENT UNK_SESSION aalookup_unit_test request-stop 200 1.729305982 0 0 -3905293/000/0004/RB EE38970D8F7978D1 0085/0085 2025-10-21T14:26:05.807930 codethink04-arm64 UNK_CLIENT UNK_SESSION aalookup_unit_test request-start test_name=BackboneSequenceTest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3905293/000/0004/RE EE38970D8F7978D1 0086/0086 2025-10-21T14:26:05.808902 codethink04-arm64 UNK_CLIENT UNK_SESSION aalookup_unit_test request-stop 200 0.000970125 0 0 -3905293/000/0005/RB EE38970D8F7978D1 0087/0087 2025-10-21T14:26:05.809219 codethink04-arm64 UNK_CLIENT UNK_SESSION aalookup_unit_test request-start test_name=SmallboneSequenceTest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3905293/000/0005/RE EE38970D8F7978D1 0088/0088 2025-10-21T14:26:05.810140 codethink04-arm64 UNK_CLIENT UNK_SESSION aalookup_unit_test request-stop 200 0.000918865 0 0 -3905293/000/0006/RB EE38970D8F7978D1 0089/0089 2025-10-21T14:26:05.810449 codethink04-arm64 UNK_CLIENT UNK_SESSION aalookup_unit_test request-start test_name=CompressedLookupNeighboringWordsTest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3905293/000/0006/R EE38970D8F7978D1 0090/0090 2025-10-21T14:26:05.969931 codethink04-arm64 UNK_CLIENT UNK_SESSION aalookup_unit_test extra ncbi_phid=EE38970D8F7978D10000000000060002 -3905293/000/0006/R EE38970D8F7978D1 0091/0091 2025-10-21T14:26:05.969962 codethink04-arm64 UNK_CLIENT UNK_SESSION aalookup_unit_test extra issued_subhit=1 -3905293/000/0006/R EE38970D8F7978D1 0092/0092 2025-10-21T14:26:35.970747 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test extra issued_subhit=2 -3905293/000/0006/R EE38970D8F7978D1 0093/0093 2025-10-21T14:26:35.971004 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3905293/000/0006/R EE38970D8F7978D1 0094/0094 2025-10-21T14:26:35.971038 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3905293/000/0006/R EE38970D8F7978D1 0095/0095 2025-10-21T14:26:35.971065 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3905293/000/0006/R EE38970D8F7978D1 0096/0096 2025-10-21T14:26:35.971088 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3905293/000/0006/R EE38970D8F7978D1 0097/0097 2025-10-21T14:26:35.971112 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3905293/000/0006/R EE38970D8F7978D1 0098/0098 2025-10-21T14:26:35.971372 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test extra issued_subhit=3 -3905293/000/0006/R EE38970D8F7978D1 0099/0099 2025-10-21T14:27:05.971792 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test extra issued_subhit=4 -3905293/000/0006/R EE38970D8F7978D1 0100/0100 2025-10-21T14:27:05.971936 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3905293/000/0006/R EE38970D8F7978D1 0101/0101 2025-10-21T14:27:05.971951 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3905293/000/0006/R EE38970D8F7978D1 0102/0102 2025-10-21T14:27:05.971971 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3905293/000/0006/R EE38970D8F7978D1 0103/0103 2025-10-21T14:27:05.971981 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3905293/000/0006/R EE38970D8F7978D1 0104/0104 2025-10-21T14:27:05.971991 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3905293/000/0006/R EE38970D8F7978D1 0105/0105 2025-10-21T14:27:05.972109 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test extra issued_subhit=5 -3905293/000/0006/R EE38970D8F7978D1 0106/0106 2025-10-21T14:27:35.972520 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test extra issued_subhit=6 -3905293/000/0006/R EE38970D8F7978D1 0107/0107 2025-10-21T14:27:35.972667 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#13000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3905293/000/0006/R EE38970D8F7978D1 0108/0108 2025-10-21T14:27:35.972682 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3905293/000/0006/R EE38970D8F7978D1 0109/0109 2025-10-21T14:27:35.972694 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3905293/000/0006/R EE38970D8F7978D1 0110/0110 2025-10-21T14:27:35.972704 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3905293/000/0006/R EE38970D8F7978D1 0111/0111 2025-10-21T14:27:35.972714 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3905293/000/0006/R EE38970D8F7978D1 0112/0112 2025-10-21T14:27:35.972835 codethink04-arm64 UNK_CLIENT EE38970D8F7981B1_0006SID aalookup_unit_test extra issued_subhit=7 - -Maximum execution time of 200 second(s) is exceeded - -real 204.26 -user 0.92 -sys 0.17 -Start time : 10/21/2025 14:24:13 -Stop time : 10/21/2025 14:27:37 -Load averages: 40.47 40.37 38.46 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -seqsrc_unit_test -====================================================================== - -3934643/000/0000/PB EE3809B38F7985F1 0001/0001 2025-10-21T14:27:43.138505 codethink04-arm64 UNK_CLIENT UNK_SESSION seqsrc_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/seqsrc_unit_test -3934643/000/0000/PB EE3809B38F7985F1 0002/0002 2025-10-21T14:27:43.138713 codethink04-arm64 UNK_CLIENT UNK_SESSION seqsrc_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/seqsrc_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 33 test cases... -3934643/000/0001/RB EE3809B38F7985F1 0003/0003 2025-10-21T14:27:43.144692 codethink04-arm64 UNK_CLIENT UNK_SESSION seqsrc_unit_test request-start test_name=testMultiSeqSrc_FailureToInitialize&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3934643/000/0001/R EE3809B38F7985F1 0004/0004 2025-10-21T14:27:43.145454 codethink04-arm64 UNK_CLIENT UNK_SESSION seqsrc_unit_test extra ncbi_phid=EE3809B38F7985F10000000000010001 -3934643/000/0001/R EE3809B38F7985F1 0005/0005 2025-10-21T14:27:43.145484 codethink04-arm64 UNK_CLIENT UNK_SESSION seqsrc_unit_test extra issued_subhit=1 -3934643/000/0001/R EE3809B38F7985F1 0006/0006 2025-10-21T14:27:43.145924 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=2 -3934643/000/0001/R EE3809B38F7985F1 0007/0007 2025-10-21T14:27:43.146075 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3934643/000/0001/R EE3809B38F7985F1 0008/0008 2025-10-21T14:27:43.146103 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3934643/000/0001/R EE3809B38F7985F1 0009/0009 2025-10-21T14:27:43.146115 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3934643/000/0001/R EE3809B38F7985F1 0010/0010 2025-10-21T14:27:43.146128 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3934643/000/0001/R EE3809B38F7985F1 0011/0011 2025-10-21T14:27:43.146139 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3934643/000/0001/R EE3809B38F7985F1 0012/0012 2025-10-21T14:27:43.146337 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=3 -3934643/000/0001/R EE3809B38F7985F1 0013/0013 2025-10-21T14:27:43.146540 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=4 -3934643/000/0001/R EE3809B38F7985F1 0014/0014 2025-10-21T14:27:43.146642 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3934643/000/0001/R EE3809B38F7985F1 0015/0015 2025-10-21T14:27:43.146653 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3934643/000/0001/R EE3809B38F7985F1 0016/0016 2025-10-21T14:27:43.146671 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3934643/000/0001/R EE3809B38F7985F1 0017/0017 2025-10-21T14:27:43.146681 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3934643/000/0001/R EE3809B38F7985F1 0018/0018 2025-10-21T14:27:43.146690 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3934643/000/0001/R EE3809B38F7985F1 0019/0019 2025-10-21T14:27:43.146759 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=5 -3934643/000/0001/R EE3809B38F7985F1 0020/0020 2025-10-21T14:27:44.147169 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=6 -3934643/000/0001/R EE3809B38F7985F1 0021/0021 2025-10-21T14:27:44.147344 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3934643/000/0001/R EE3809B38F7985F1 0022/0022 2025-10-21T14:27:44.147360 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3934643/000/0001/R EE3809B38F7985F1 0023/0023 2025-10-21T14:27:44.147373 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3934643/000/0001/R EE3809B38F7985F1 0024/0024 2025-10-21T14:27:44.147384 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3934643/000/0001/R EE3809B38F7985F1 0025/0025 2025-10-21T14:27:44.147396 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3934643/000/0001/R EE3809B38F7985F1 0026/0026 2025-10-21T14:27:44.147513 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=7 -3934643/000/0001/R EE3809B38F7985F1 0027/0027 2025-10-21T14:27:46.648362 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=8 -3934643/000/0001/R EE3809B38F7985F1 0028/0028 2025-10-21T14:27:46.648634 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3934643/000/0001/R EE3809B38F7985F1 0029/0029 2025-10-21T14:27:46.648678 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3934643/000/0001/R EE3809B38F7985F1 0030/0030 2025-10-21T14:27:46.648871 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3934643/000/0001/R EE3809B38F7985F1 0031/0031 2025-10-21T14:27:46.648905 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3934643/000/0001/R EE3809B38F7985F1 0032/0032 2025-10-21T14:27:46.648934 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3934643/000/0001/R EE3809B38F7985F1 0033/0033 2025-10-21T14:27:46.649178 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=9 -3934643/000/0001/R EE3809B38F7985F1 0034/0034 2025-10-21T14:27:51.399616 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=10 -3934643/000/0001/R EE3809B38F7985F1 0035/0035 2025-10-21T14:27:51.399765 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3934643/000/0001/R EE3809B38F7985F1 0036/0036 2025-10-21T14:27:51.399779 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3934643/000/0001/R EE3809B38F7985F1 0037/0037 2025-10-21T14:27:51.399793 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3934643/000/0001/R EE3809B38F7985F1 0038/0038 2025-10-21T14:27:51.399806 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3934643/000/0001/R EE3809B38F7985F1 0039/0039 2025-10-21T14:27:51.399817 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3934643/000/0001/R EE3809B38F7985F1 0040/0040 2025-10-21T14:27:51.400008 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=11 -3934643/000/0001/R EE3809B38F7985F1 0041/0041 2025-10-21T14:27:59.525431 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=12 -3934643/000/0001/R EE3809B38F7985F1 0042/0042 2025-10-21T14:27:59.525592 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3934643/000/0001/R EE3809B38F7985F1 0043/0043 2025-10-21T14:27:59.525608 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3934643/000/0001/R EE3809B38F7985F1 0044/0044 2025-10-21T14:27:59.525625 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3934643/000/0001/R EE3809B38F7985F1 0045/0045 2025-10-21T14:27:59.525637 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3934643/000/0001/R EE3809B38F7985F1 0046/0046 2025-10-21T14:27:59.525648 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3934643/000/0001/R EE3809B38F7985F1 0047/0047 2025-10-21T14:27:59.525770 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=13 -3934643/000/0001/R EE3809B38F7985F1 0048/0048 2025-10-21T14:28:12.713686 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=14 -3934643/000/0001/R EE3809B38F7985F1 0049/0049 2025-10-21T14:28:12.713834 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3934643/000/0001/R EE3809B38F7985F1 0050/0050 2025-10-21T14:28:12.713849 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3934643/000/0001/R EE3809B38F7985F1 0051/0051 2025-10-21T14:28:12.713861 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3934643/000/0001/R EE3809B38F7985F1 0052/0052 2025-10-21T14:28:12.713873 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3934643/000/0001/R EE3809B38F7985F1 0053/0053 2025-10-21T14:28:12.713883 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3934643/000/0001/R EE3809B38F7985F1 0054/0054 2025-10-21T14:28:12.713996 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=15 -3934643/000/0001/R EE3809B38F7985F1 0055/0055 2025-10-21T14:28:33.495639 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=16 -3934643/000/0001/R EE3809B38F7985F1 0056/0056 2025-10-21T14:28:33.495786 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3934643/000/0001/R EE3809B38F7985F1 0057/0057 2025-10-21T14:28:33.495800 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3934643/000/0001/R EE3809B38F7985F1 0058/0058 2025-10-21T14:28:33.495820 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3934643/000/0001/R EE3809B38F7985F1 0059/0059 2025-10-21T14:28:33.495832 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3934643/000/0001/R EE3809B38F7985F1 0060/0060 2025-10-21T14:28:33.495842 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3934643/000/0001/R EE3809B38F7985F1 0061/0061 2025-10-21T14:28:33.495957 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=17 -3934643/000/0001/R EE3809B38F7985F1 0062/0062 2025-10-21T14:29:03.496372 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=18 -3934643/000/0001/R EE3809B38F7985F1 0063/0063 2025-10-21T14:29:03.496521 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3934643/000/0001/R EE3809B38F7985F1 0064/0064 2025-10-21T14:29:03.496536 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3934643/000/0001/R EE3809B38F7985F1 0065/0065 2025-10-21T14:29:03.496548 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3934643/000/0001/R EE3809B38F7985F1 0066/0066 2025-10-21T14:29:03.496558 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3934643/000/0001/R EE3809B38F7985F1 0067/0067 2025-10-21T14:29:03.496569 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3934643/000/0001/R EE3809B38F7985F1 0068/0068 2025-10-21T14:29:03.496685 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=19 -3934643/000/0001/R EE3809B38F7985F1 0069/0069 2025-10-21T14:29:33.497085 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=20 -3934643/000/0001/R EE3809B38F7985F1 0070/0070 2025-10-21T14:29:33.497228 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3934643/000/0001/R EE3809B38F7985F1 0071/0071 2025-10-21T14:29:33.497243 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3934643/000/0001/R EE3809B38F7985F1 0072/0072 2025-10-21T14:29:33.497262 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3934643/000/0001/R EE3809B38F7985F1 0073/0073 2025-10-21T14:29:33.497274 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3934643/000/0001/R EE3809B38F7985F1 0074/0074 2025-10-21T14:29:33.497285 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3934643/000/0001/R EE3809B38F7985F1 0075/0075 2025-10-21T14:29:33.497467 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=21 -3934643/000/0001/R EE3809B38F7985F1 0076/0076 2025-10-21T14:30:03.497884 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=22 -3934643/000/0001/R EE3809B38F7985F1 0077/0077 2025-10-21T14:30:03.498038 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3934643/000/0001/R EE3809B38F7985F1 0078/0078 2025-10-21T14:30:03.498053 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3934643/000/0001/R EE3809B38F7985F1 0079/0079 2025-10-21T14:30:03.498065 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3934643/000/0001/R EE3809B38F7985F1 0080/0080 2025-10-21T14:30:03.498076 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3934643/000/0001/R EE3809B38F7985F1 0081/0081 2025-10-21T14:30:03.498087 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3934643/000/0001/R EE3809B38F7985F1 0082/0082 2025-10-21T14:30:03.498202 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=23 -3934643/000/0001/R EE3809B38F7985F1 0083/0083 2025-10-21T14:30:33.498601 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=24 -3934643/000/0001/R EE3809B38F7985F1 0084/0084 2025-10-21T14:30:33.498747 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3934643/000/0001/R EE3809B38F7985F1 0085/0085 2025-10-21T14:30:33.498762 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3934643/000/0001/R EE3809B38F7985F1 0086/0086 2025-10-21T14:30:33.498801 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3934643/000/0001/R EE3809B38F7985F1 0087/0087 2025-10-21T14:30:33.498813 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3934643/000/0001/R EE3809B38F7985F1 0088/0088 2025-10-21T14:30:33.498824 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3934643/000/0001/R EE3809B38F7985F1 0089/0089 2025-10-21T14:30:33.498974 codethink04-arm64 UNK_CLIENT EE3809B38F7985F1_0001SID seqsrc_unit_test extra issued_subhit=25 - -Maximum execution time of 200 second(s) is exceeded - -real 203.12 -user 0.14 -sys 0.13 -Start time : 10/21/2025 14:27:39 -Stop time : 10/21/2025 14:31:03 -Load averages: 41.55 41.81 39.45 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -ntlookup_unit_test -====================================================================== - -3978040/000/0000/PB EE38B3388F7992B1 0001/0001 2025-10-21T14:31:07.799408 codethink04-arm64 UNK_CLIENT UNK_SESSION ntlookup_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/ntlookup_unit_test -3978040/000/0000/PB EE38B3388F7992B1 0002/0002 2025-10-21T14:31:07.799594 codethink04-arm64 UNK_CLIENT UNK_SESSION ntlookup_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/ntlookup_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 14 test cases... -3978040/000/0001/RB EE38B3388F7992B1 0003/0003 2025-10-21T14:31:07.801401 codethink04-arm64 UNK_CLIENT UNK_SESSION ntlookup_unit_test request-start test_name=testStdLookupTable&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3978040/000/0001/R EE38B3388F7992B1 0004/0004 2025-10-21T14:31:07.802094 codethink04-arm64 UNK_CLIENT UNK_SESSION ntlookup_unit_test extra ncbi_phid=EE38B3388F7992B10000000000010001 -3978040/000/0001/R EE38B3388F7992B1 0005/0005 2025-10-21T14:31:07.802124 codethink04-arm64 UNK_CLIENT UNK_SESSION ntlookup_unit_test extra issued_subhit=1 -3978040/000/0001/R EE38B3388F7992B1 0006/0006 2025-10-21T14:31:07.802633 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=2 -3978040/000/0001/R EE38B3388F7992B1 0007/0007 2025-10-21T14:31:07.802764 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3978040/000/0001/R EE38B3388F7992B1 0008/0008 2025-10-21T14:31:07.802792 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3978040/000/0001/R EE38B3388F7992B1 0009/0009 2025-10-21T14:31:07.802803 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3978040/000/0001/R EE38B3388F7992B1 0010/0010 2025-10-21T14:31:07.802813 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3978040/000/0001/R EE38B3388F7992B1 0011/0011 2025-10-21T14:31:07.802822 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3978040/000/0001/R EE38B3388F7992B1 0012/0012 2025-10-21T14:31:07.803010 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=3 -3978040/000/0001/R EE38B3388F7992B1 0013/0013 2025-10-21T14:31:07.803235 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=4 -3978040/000/0001/R EE38B3388F7992B1 0014/0014 2025-10-21T14:31:07.803335 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3978040/000/0001/R EE38B3388F7992B1 0015/0015 2025-10-21T14:31:07.803349 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3978040/000/0001/R EE38B3388F7992B1 0016/0016 2025-10-21T14:31:07.803365 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3978040/000/0001/R EE38B3388F7992B1 0017/0017 2025-10-21T14:31:07.803374 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3978040/000/0001/R EE38B3388F7992B1 0018/0018 2025-10-21T14:31:07.803383 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3978040/000/0001/R EE38B3388F7992B1 0019/0019 2025-10-21T14:31:07.803457 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=5 -3978040/000/0001/R EE38B3388F7992B1 0020/0020 2025-10-21T14:31:08.803860 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=6 -3978040/000/0001/R EE38B3388F7992B1 0021/0021 2025-10-21T14:31:08.804062 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3978040/000/0001/R EE38B3388F7992B1 0022/0022 2025-10-21T14:31:08.804080 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3978040/000/0001/R EE38B3388F7992B1 0023/0023 2025-10-21T14:31:08.804092 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3978040/000/0001/R EE38B3388F7992B1 0024/0024 2025-10-21T14:31:08.804102 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3978040/000/0001/R EE38B3388F7992B1 0025/0025 2025-10-21T14:31:08.804112 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3978040/000/0001/R EE38B3388F7992B1 0026/0026 2025-10-21T14:31:08.804232 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=7 -3978040/000/0001/R EE38B3388F7992B1 0027/0027 2025-10-21T14:31:11.304646 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=8 -3978040/000/0001/R EE38B3388F7992B1 0028/0028 2025-10-21T14:31:11.304785 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3978040/000/0001/R EE38B3388F7992B1 0029/0029 2025-10-21T14:31:11.304803 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3978040/000/0001/R EE38B3388F7992B1 0030/0030 2025-10-21T14:31:11.304821 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3978040/000/0001/R EE38B3388F7992B1 0031/0031 2025-10-21T14:31:11.304831 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3978040/000/0001/R EE38B3388F7992B1 0032/0032 2025-10-21T14:31:11.304842 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3978040/000/0001/R EE38B3388F7992B1 0033/0033 2025-10-21T14:31:11.304958 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=9 -3978040/000/0001/R EE38B3388F7992B1 0034/0034 2025-10-21T14:31:16.055758 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=10 -3978040/000/0001/R EE38B3388F7992B1 0035/0035 2025-10-21T14:31:16.056004 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3978040/000/0001/R EE38B3388F7992B1 0036/0036 2025-10-21T14:31:16.056037 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3978040/000/0001/R EE38B3388F7992B1 0037/0037 2025-10-21T14:31:16.056064 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3978040/000/0001/R EE38B3388F7992B1 0038/0038 2025-10-21T14:31:16.056089 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3978040/000/0001/R EE38B3388F7992B1 0039/0039 2025-10-21T14:31:16.056110 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3978040/000/0001/R EE38B3388F7992B1 0040/0040 2025-10-21T14:31:16.056467 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=11 -3978040/000/0001/R EE38B3388F7992B1 0041/0041 2025-10-21T14:31:24.181893 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=12 -3978040/000/0001/R EE38B3388F7992B1 0042/0042 2025-10-21T14:31:24.182036 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3978040/000/0001/R EE38B3388F7992B1 0043/0043 2025-10-21T14:31:24.182050 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3978040/000/0001/R EE38B3388F7992B1 0044/0044 2025-10-21T14:31:24.182070 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3978040/000/0001/R EE38B3388F7992B1 0045/0045 2025-10-21T14:31:24.182080 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3978040/000/0001/R EE38B3388F7992B1 0046/0046 2025-10-21T14:31:24.182090 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3978040/000/0001/R EE38B3388F7992B1 0047/0047 2025-10-21T14:31:24.182219 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=13 -3978040/000/0001/R EE38B3388F7992B1 0048/0048 2025-10-21T14:31:37.370118 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=14 -3978040/000/0001/R EE38B3388F7992B1 0049/0049 2025-10-21T14:31:37.370257 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3978040/000/0001/R EE38B3388F7992B1 0050/0050 2025-10-21T14:31:37.370271 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3978040/000/0001/R EE38B3388F7992B1 0051/0051 2025-10-21T14:31:37.370281 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3978040/000/0001/R EE38B3388F7992B1 0052/0052 2025-10-21T14:31:37.370290 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3978040/000/0001/R EE38B3388F7992B1 0053/0053 2025-10-21T14:31:37.370300 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3978040/000/0001/R EE38B3388F7992B1 0054/0054 2025-10-21T14:31:37.370426 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=15 -3978040/000/0001/R EE38B3388F7992B1 0055/0055 2025-10-21T14:31:58.152068 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=16 -3978040/000/0001/R EE38B3388F7992B1 0056/0056 2025-10-21T14:31:58.152211 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3978040/000/0001/R EE38B3388F7992B1 0057/0057 2025-10-21T14:31:58.152225 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3978040/000/0001/R EE38B3388F7992B1 0058/0058 2025-10-21T14:31:58.152241 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3978040/000/0001/R EE38B3388F7992B1 0059/0059 2025-10-21T14:31:58.152251 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3978040/000/0001/R EE38B3388F7992B1 0060/0060 2025-10-21T14:31:58.152261 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3978040/000/0001/R EE38B3388F7992B1 0061/0061 2025-10-21T14:31:58.152391 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=17 -3978040/000/0001/R EE38B3388F7992B1 0062/0062 2025-10-21T14:32:28.152798 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=18 -3978040/000/0001/R EE38B3388F7992B1 0063/0063 2025-10-21T14:32:28.152955 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3978040/000/0001/R EE38B3388F7992B1 0064/0064 2025-10-21T14:32:28.152972 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3978040/000/0001/R EE38B3388F7992B1 0065/0065 2025-10-21T14:32:28.152984 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3978040/000/0001/R EE38B3388F7992B1 0066/0066 2025-10-21T14:32:28.152994 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3978040/000/0001/R EE38B3388F7992B1 0067/0067 2025-10-21T14:32:28.153004 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3978040/000/0001/R EE38B3388F7992B1 0068/0068 2025-10-21T14:32:28.153139 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=19 -3978040/000/0001/R EE38B3388F7992B1 0069/0069 2025-10-21T14:32:58.153570 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test extra issued_subhit=20 -3978040/000/0001/R EE38B3388F7992B1 0070/0070 2025-10-21T14:32:58.153720 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3978040/000/0001/R EE38B3388F7992B1 0071/0071 2025-10-21T14:32:58.153734 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3978040/000/0001/R EE38B3388F7992B1 0072/0072 2025-10-21T14:32:58.153752 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3978040/000/0001/R EE38B3388F7992B1 0073/0073 2025-10-21T14:32:58.153761 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3978040/000/0001/R EE38B3388F7992B1 0074/0074 2025-10-21T14:32:58.153771 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3978040/000/0001/R EE38B3388F7992B1 0075/0075 2025-10-21T14:32:58.154048 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 -3978040/000/0001/R EE38B3388F7992B1 0076/0076 2025-10-21T14:32:58.154060 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: GENBANK(CLoaderException::eConnectionFailed) "reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|1945386)) -3978040/000/0001/R EE38B3388F7992B1 0077/0077 2025-10-21T14:32:58.154067 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test Error: BLAST "ntlookup_unit_test.cpp", line 176: ntlookup::testStdLookupTable_invoker() --- Uncaught exception in "testStdLookupTable"(CLoaderException::eConnectionFailed) failed to send request: NULL (in GetRecords(gi|1945386)) -3978040/000/0001/RE EE38B3388F7992B1 0080/0080 2025-10-21T14:32:58.154113 codethink04-arm64 UNK_CLIENT EE38B3388F7992B1_0001SID ntlookup_unit_test request-stop 500 110.352723836 0 0 -unknown location(0): fatal error: in "ntlookup/testStdLookupTable": NCBI C++ Exception: - Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 - Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|1945386)) - -./c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp(176): last checkpoint: "testStdLookupTable" entry. -3978040/000/0002/RB EE38B3388F7992B1 0081/0081 2025-10-21T14:32:58.154517 codethink04-arm64 UNK_CLIENT UNK_SESSION ntlookup_unit_test request-start test_name=testMegablastLookupTable&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3978040/000/0002/R EE38B3388F7992B1 0082/0082 2025-10-21T14:32:58.154593 codethink04-arm64 UNK_CLIENT UNK_SESSION ntlookup_unit_test extra ncbi_phid=EE38B3388F7992B10000000000020002 -3978040/000/0002/R EE38B3388F7992B1 0083/0083 2025-10-21T14:32:58.154604 codethink04-arm64 UNK_CLIENT UNK_SESSION ntlookup_unit_test extra issued_subhit=1 -3978040/000/0002/R EE38B3388F7992B1 0084/0084 2025-10-21T14:33:28.155023 codethink04-arm64 UNK_CLIENT EE38B3388F799B81_0002SID ntlookup_unit_test extra issued_subhit=2 -3978040/000/0002/R EE38B3388F7992B1 0085/0085 2025-10-21T14:33:28.155166 codethink04-arm64 UNK_CLIENT EE38B3388F799B81_0002SID ntlookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3978040/000/0002/R EE38B3388F7992B1 0086/0086 2025-10-21T14:33:28.155215 codethink04-arm64 UNK_CLIENT EE38B3388F799B81_0002SID ntlookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3978040/000/0002/R EE38B3388F7992B1 0087/0087 2025-10-21T14:33:28.155230 codethink04-arm64 UNK_CLIENT EE38B3388F799B81_0002SID ntlookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3978040/000/0002/R EE38B3388F7992B1 0088/0088 2025-10-21T14:33:28.155241 codethink04-arm64 UNK_CLIENT EE38B3388F799B81_0002SID ntlookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3978040/000/0002/R EE38B3388F7992B1 0089/0089 2025-10-21T14:33:28.155251 codethink04-arm64 UNK_CLIENT EE38B3388F799B81_0002SID ntlookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3978040/000/0002/R EE38B3388F7992B1 0090/0090 2025-10-21T14:33:28.155366 codethink04-arm64 UNK_CLIENT EE38B3388F799B81_0002SID ntlookup_unit_test extra issued_subhit=3 -3978040/000/0002/R EE38B3388F7992B1 0091/0091 2025-10-21T14:33:58.155761 codethink04-arm64 UNK_CLIENT EE38B3388F799B81_0002SID ntlookup_unit_test extra issued_subhit=4 -3978040/000/0002/R EE38B3388F7992B1 0092/0092 2025-10-21T14:33:58.155906 codethink04-arm64 UNK_CLIENT EE38B3388F799B81_0002SID ntlookup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3978040/000/0002/R EE38B3388F7992B1 0093/0093 2025-10-21T14:33:58.155921 codethink04-arm64 UNK_CLIENT EE38B3388F799B81_0002SID ntlookup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3978040/000/0002/R EE38B3388F7992B1 0094/0094 2025-10-21T14:33:58.155933 codethink04-arm64 UNK_CLIENT EE38B3388F799B81_0002SID ntlookup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3978040/000/0002/R EE38B3388F7992B1 0095/0095 2025-10-21T14:33:58.155942 codethink04-arm64 UNK_CLIENT EE38B3388F799B81_0002SID ntlookup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3978040/000/0002/R EE38B3388F7992B1 0096/0096 2025-10-21T14:33:58.155952 codethink04-arm64 UNK_CLIENT EE38B3388F799B81_0002SID ntlookup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3978040/000/0002/R EE38B3388F7992B1 0097/0097 2025-10-21T14:33:58.156065 codethink04-arm64 UNK_CLIENT EE38B3388F799B81_0002SID ntlookup_unit_test extra issued_subhit=5 - -Maximum execution time of 200 second(s) is exceeded - -real 200.33 -user 0.14 -sys 0.03 -Start time : 10/21/2025 14:31:07 -Stop time : 10/21/2025 14:34:28 -Load averages: 29.37 35.47 37.39 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -seqinfosrc_unit_test -====================================================================== - -3993945/000/0000/PB EE38F1598F799F41 0001/0001 2025-10-21T14:34:28.230841 codethink04-arm64 UNK_CLIENT UNK_SESSION seqinfosrc_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/seqinfosrc_unit_test -3993945/000/0000/PB EE38F1598F799F41 0002/0002 2025-10-21T14:34:28.231020 codethink04-arm64 UNK_CLIENT UNK_SESSION seqinfosrc_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/seqinfosrc_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 6 test cases... -3993945/000/0001/RB EE38F1598F799F41 0003/0003 2025-10-21T14:34:28.232634 codethink04-arm64 UNK_CLIENT UNK_SESSION seqinfosrc_unit_test request-start test_name=testSeqVecSeqInfoSrc&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -3993945/000/0001/R EE38F1598F799F41 0004/0004 2025-10-21T14:34:28.233272 codethink04-arm64 UNK_CLIENT UNK_SESSION seqinfosrc_unit_test extra ncbi_phid=EE38F1598F799F410000000000010001 -3993945/000/0001/R EE38F1598F799F41 0005/0005 2025-10-21T14:34:28.233297 codethink04-arm64 UNK_CLIENT UNK_SESSION seqinfosrc_unit_test extra issued_subhit=1 -3993945/000/0001/R EE38F1598F799F41 0006/0006 2025-10-21T14:34:28.233733 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=2 -3993945/000/0001/R EE38F1598F799F41 0007/0007 2025-10-21T14:34:28.233868 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3993945/000/0001/R EE38F1598F799F41 0008/0008 2025-10-21T14:34:28.233894 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3993945/000/0001/R EE38F1598F799F41 0009/0009 2025-10-21T14:34:28.233908 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3993945/000/0001/R EE38F1598F799F41 0010/0010 2025-10-21T14:34:28.233919 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3993945/000/0001/R EE38F1598F799F41 0011/0011 2025-10-21T14:34:28.233931 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3993945/000/0001/R EE38F1598F799F41 0012/0012 2025-10-21T14:34:28.234110 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=3 -3993945/000/0001/R EE38F1598F799F41 0013/0013 2025-10-21T14:34:28.234302 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=4 -3993945/000/0001/R EE38F1598F799F41 0014/0014 2025-10-21T14:34:28.234389 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3993945/000/0001/R EE38F1598F799F41 0015/0015 2025-10-21T14:34:28.234402 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3993945/000/0001/R EE38F1598F799F41 0016/0016 2025-10-21T14:34:28.234421 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3993945/000/0001/R EE38F1598F799F41 0017/0017 2025-10-21T14:34:28.234432 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3993945/000/0001/R EE38F1598F799F41 0018/0018 2025-10-21T14:34:28.234441 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3993945/000/0001/R EE38F1598F799F41 0019/0019 2025-10-21T14:34:28.234511 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=5 -3993945/000/0001/R EE38F1598F799F41 0020/0020 2025-10-21T14:34:29.234918 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=6 -3993945/000/0001/R EE38F1598F799F41 0021/0021 2025-10-21T14:34:29.235057 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3993945/000/0001/R EE38F1598F799F41 0022/0022 2025-10-21T14:34:29.235074 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3993945/000/0001/R EE38F1598F799F41 0023/0023 2025-10-21T14:34:29.235087 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3993945/000/0001/R EE38F1598F799F41 0024/0024 2025-10-21T14:34:29.235099 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3993945/000/0001/R EE38F1598F799F41 0025/0025 2025-10-21T14:34:29.235111 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3993945/000/0001/R EE38F1598F799F41 0026/0026 2025-10-21T14:34:29.235251 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=7 -3993945/000/0001/R EE38F1598F799F41 0027/0027 2025-10-21T14:34:31.735660 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=8 -3993945/000/0001/R EE38F1598F799F41 0028/0028 2025-10-21T14:34:31.735807 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3993945/000/0001/R EE38F1598F799F41 0029/0029 2025-10-21T14:34:31.735823 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3993945/000/0001/R EE38F1598F799F41 0030/0030 2025-10-21T14:34:31.735844 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3993945/000/0001/R EE38F1598F799F41 0031/0031 2025-10-21T14:34:31.735857 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3993945/000/0001/R EE38F1598F799F41 0032/0032 2025-10-21T14:34:31.735869 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3993945/000/0001/R EE38F1598F799F41 0033/0033 2025-10-21T14:34:31.735991 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=9 -3993945/000/0001/R EE38F1598F799F41 0034/0034 2025-10-21T14:34:36.486404 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=10 -3993945/000/0001/R EE38F1598F799F41 0035/0035 2025-10-21T14:34:36.486548 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3993945/000/0001/R EE38F1598F799F41 0036/0036 2025-10-21T14:34:36.486566 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3993945/000/0001/R EE38F1598F799F41 0037/0037 2025-10-21T14:34:36.486579 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3993945/000/0001/R EE38F1598F799F41 0038/0038 2025-10-21T14:34:36.486591 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3993945/000/0001/R EE38F1598F799F41 0039/0039 2025-10-21T14:34:36.486604 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3993945/000/0001/R EE38F1598F799F41 0040/0040 2025-10-21T14:34:36.486786 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=11 -3993945/000/0001/R EE38F1598F799F41 0041/0041 2025-10-21T14:34:44.612189 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=12 -3993945/000/0001/R EE38F1598F799F41 0042/0042 2025-10-21T14:34:44.612379 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3993945/000/0001/R EE38F1598F799F41 0043/0043 2025-10-21T14:34:44.612398 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3993945/000/0001/R EE38F1598F799F41 0044/0044 2025-10-21T14:34:44.612418 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3993945/000/0001/R EE38F1598F799F41 0045/0045 2025-10-21T14:34:44.612431 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3993945/000/0001/R EE38F1598F799F41 0046/0046 2025-10-21T14:34:44.612443 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3993945/000/0001/R EE38F1598F799F41 0047/0047 2025-10-21T14:34:44.612561 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=13 -3993945/000/0001/R EE38F1598F799F41 0048/0048 2025-10-21T14:34:57.800461 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=14 -3993945/000/0001/R EE38F1598F799F41 0049/0049 2025-10-21T14:34:57.800609 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3993945/000/0001/R EE38F1598F799F41 0050/0050 2025-10-21T14:34:57.800627 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3993945/000/0001/R EE38F1598F799F41 0051/0051 2025-10-21T14:34:57.800640 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3993945/000/0001/R EE38F1598F799F41 0052/0052 2025-10-21T14:34:57.800652 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3993945/000/0001/R EE38F1598F799F41 0053/0053 2025-10-21T14:34:57.800664 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3993945/000/0001/R EE38F1598F799F41 0054/0054 2025-10-21T14:34:57.800781 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=15 -3993945/000/0001/R EE38F1598F799F41 0055/0055 2025-10-21T14:35:18.582447 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=16 -3993945/000/0001/R EE38F1598F799F41 0056/0056 2025-10-21T14:35:18.582598 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3993945/000/0001/R EE38F1598F799F41 0057/0057 2025-10-21T14:35:18.582614 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3993945/000/0001/R EE38F1598F799F41 0058/0058 2025-10-21T14:35:18.582635 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3993945/000/0001/R EE38F1598F799F41 0059/0059 2025-10-21T14:35:18.582649 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3993945/000/0001/R EE38F1598F799F41 0060/0060 2025-10-21T14:35:18.582662 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3993945/000/0001/R EE38F1598F799F41 0061/0061 2025-10-21T14:35:18.582781 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=17 -3993945/000/0001/R EE38F1598F799F41 0062/0062 2025-10-21T14:35:48.583217 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=18 -3993945/000/0001/R EE38F1598F799F41 0063/0063 2025-10-21T14:35:48.583371 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3993945/000/0001/R EE38F1598F799F41 0064/0064 2025-10-21T14:35:48.583388 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3993945/000/0001/R EE38F1598F799F41 0065/0065 2025-10-21T14:35:48.583402 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3993945/000/0001/R EE38F1598F799F41 0066/0066 2025-10-21T14:35:48.583414 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3993945/000/0001/R EE38F1598F799F41 0067/0067 2025-10-21T14:35:48.583426 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3993945/000/0001/R EE38F1598F799F41 0068/0068 2025-10-21T14:35:48.583541 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=19 -3993945/000/0001/R EE38F1598F799F41 0069/0069 2025-10-21T14:36:18.584282 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=20 -3993945/000/0001/R EE38F1598F799F41 0070/0070 2025-10-21T14:36:18.584559 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3993945/000/0001/R EE38F1598F799F41 0071/0071 2025-10-21T14:36:18.584596 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3993945/000/0001/R EE38F1598F799F41 0072/0072 2025-10-21T14:36:18.584637 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3993945/000/0001/R EE38F1598F799F41 0073/0073 2025-10-21T14:36:18.584666 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3993945/000/0001/R EE38F1598F799F41 0074/0074 2025-10-21T14:36:18.584691 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3993945/000/0001/R EE38F1598F799F41 0075/0075 2025-10-21T14:36:18.584996 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=21 -3993945/000/0001/R EE38F1598F799F41 0076/0076 2025-10-21T14:36:48.585785 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=22 -3993945/000/0001/R EE38F1598F799F41 0077/0077 2025-10-21T14:36:48.586074 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3993945/000/0001/R EE38F1598F799F41 0078/0078 2025-10-21T14:36:48.586112 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3993945/000/0001/R EE38F1598F799F41 0079/0079 2025-10-21T14:36:48.586147 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3993945/000/0001/R EE38F1598F799F41 0080/0080 2025-10-21T14:36:48.586176 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3993945/000/0001/R EE38F1598F799F41 0081/0081 2025-10-21T14:36:48.586203 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3993945/000/0001/R EE38F1598F799F41 0082/0082 2025-10-21T14:36:48.586431 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=23 -3993945/000/0001/R EE38F1598F799F41 0083/0083 2025-10-21T14:37:18.587266 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=24 -3993945/000/0001/R EE38F1598F799F41 0084/0084 2025-10-21T14:37:18.587524 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3993945/000/0001/R EE38F1598F799F41 0085/0085 2025-10-21T14:37:18.587564 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3993945/000/0001/R EE38F1598F799F41 0086/0086 2025-10-21T14:37:18.796552 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3993945/000/0001/R EE38F1598F799F41 0087/0087 2025-10-21T14:37:18.796602 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3993945/000/0001/R EE38F1598F799F41 0088/0088 2025-10-21T14:37:18.796630 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3993945/000/0001/R EE38F1598F799F41 0089/0089 2025-10-21T14:37:18.796863 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=25 -3993945/000/0001/R EE38F1598F799F41 0090/0090 2025-10-21T14:37:48.797674 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=26 -3993945/000/0001/R EE38F1598F799F41 0091/0091 2025-10-21T14:37:48.797937 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#13000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3993945/000/0001/R EE38F1598F799F41 0092/0092 2025-10-21T14:37:48.797979 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -3993945/000/0001/R EE38F1598F799F41 0093/0093 2025-10-21T14:37:48.798012 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -3993945/000/0001/R EE38F1598F799F41 0094/0094 2025-10-21T14:37:48.798041 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -3993945/000/0001/R EE38F1598F799F41 0095/0095 2025-10-21T14:37:48.798069 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3993945/000/0001/R EE38F1598F799F41 0096/0096 2025-10-21T14:37:48.798302 codethink04-arm64 UNK_CLIENT EE38F1598F799F41_0001SID seqinfosrc_unit_test extra issued_subhit=27 - -Maximum execution time of 200 second(s) is exceeded - -real 208.09 -user 0.06 -sys 0.02 -Start time : 10/21/2025 14:34:28 -Stop time : 10/21/2025 14:37:56 -Load averages: 29.70 31.24 35.20 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -setupfactory_unit_test -====================================================================== - -4014892/000/0000/PB EE38432C8F79ACA1 0001/0001 2025-10-21T14:38:02.759382 codethink04-arm64 UNK_CLIENT UNK_SESSION setupfactory_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/setupfactory_unit_test -4014892/000/0000/PB EE38432C8F79ACA1 0002/0002 2025-10-21T14:38:02.759570 codethink04-arm64 UNK_CLIENT UNK_SESSION setupfactory_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/setupfactory_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 3 test cases... -4014892/000/0001/RB EE38432C8F79ACA1 0003/0003 2025-10-21T14:38:02.761138 codethink04-arm64 UNK_CLIENT UNK_SESSION setupfactory_unit_test request-start test_name=CreateScoreBlockBadReward&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4014892/000/0001/R EE38432C8F79ACA1 0004/0004 2025-10-21T14:38:02.761802 codethink04-arm64 UNK_CLIENT UNK_SESSION setupfactory_unit_test extra ncbi_phid=EE38432C8F79ACA10000000000010001 -4014892/000/0001/R EE38432C8F79ACA1 0005/0005 2025-10-21T14:38:02.761829 codethink04-arm64 UNK_CLIENT UNK_SESSION setupfactory_unit_test extra issued_subhit=1 -4014892/000/0001/R EE38432C8F79ACA1 0006/0006 2025-10-21T14:38:02.762249 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=2 -4014892/000/0001/R EE38432C8F79ACA1 0007/0007 2025-10-21T14:38:02.762394 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0001/R EE38432C8F79ACA1 0008/0008 2025-10-21T14:38:02.762424 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0009/0009 2025-10-21T14:38:02.762436 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0001/R EE38432C8F79ACA1 0010/0010 2025-10-21T14:38:02.762446 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0001/R EE38432C8F79ACA1 0011/0011 2025-10-21T14:38:02.762456 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0012/0012 2025-10-21T14:38:02.762645 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=3 -4014892/000/0001/R EE38432C8F79ACA1 0013/0013 2025-10-21T14:38:02.762838 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=4 -4014892/000/0001/R EE38432C8F79ACA1 0014/0014 2025-10-21T14:38:02.762925 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0001/R EE38432C8F79ACA1 0015/0015 2025-10-21T14:38:02.762937 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0016/0016 2025-10-21T14:38:02.762954 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0001/R EE38432C8F79ACA1 0017/0017 2025-10-21T14:38:02.762964 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0001/R EE38432C8F79ACA1 0018/0018 2025-10-21T14:38:02.762972 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0019/0019 2025-10-21T14:38:02.763038 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=5 -4014892/000/0001/R EE38432C8F79ACA1 0020/0020 2025-10-21T14:38:03.763531 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=6 -4014892/000/0001/R EE38432C8F79ACA1 0021/0021 2025-10-21T14:38:03.763680 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0001/R EE38432C8F79ACA1 0022/0022 2025-10-21T14:38:03.763696 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0023/0023 2025-10-21T14:38:03.763707 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0001/R EE38432C8F79ACA1 0024/0024 2025-10-21T14:38:03.763719 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0001/R EE38432C8F79ACA1 0025/0025 2025-10-21T14:38:03.763730 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0026/0026 2025-10-21T14:38:03.763845 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=7 -4014892/000/0001/R EE38432C8F79ACA1 0027/0027 2025-10-21T14:38:06.264548 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=8 -4014892/000/0001/R EE38432C8F79ACA1 0028/0028 2025-10-21T14:38:06.264797 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0001/R EE38432C8F79ACA1 0029/0029 2025-10-21T14:38:06.264825 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0030/0030 2025-10-21T14:38:06.264855 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0001/R EE38432C8F79ACA1 0031/0031 2025-10-21T14:38:06.264875 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0001/R EE38432C8F79ACA1 0032/0032 2025-10-21T14:38:06.264894 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0033/0033 2025-10-21T14:38:06.265076 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=9 -4014892/000/0001/R EE38432C8F79ACA1 0034/0034 2025-10-21T14:38:11.015927 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=10 -4014892/000/0001/R EE38432C8F79ACA1 0035/0035 2025-10-21T14:38:11.016175 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0001/R EE38432C8F79ACA1 0036/0036 2025-10-21T14:38:11.016208 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0037/0037 2025-10-21T14:38:11.016238 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0001/R EE38432C8F79ACA1 0038/0038 2025-10-21T14:38:11.016264 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0001/R EE38432C8F79ACA1 0039/0039 2025-10-21T14:38:11.016289 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0040/0040 2025-10-21T14:38:11.058949 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=11 -4014892/000/0001/R EE38432C8F79ACA1 0041/0041 2025-10-21T14:38:19.430753 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=12 -4014892/000/0001/R EE38432C8F79ACA1 0042/0042 2025-10-21T14:38:19.431348 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0001/R EE38432C8F79ACA1 0043/0043 2025-10-21T14:38:19.431400 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0044/0044 2025-10-21T14:38:19.431430 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0001/R EE38432C8F79ACA1 0045/0045 2025-10-21T14:38:19.431458 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0001/R EE38432C8F79ACA1 0046/0046 2025-10-21T14:38:19.431486 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0047/0047 2025-10-21T14:38:19.431806 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=13 -4014892/000/0001/R EE38432C8F79ACA1 0048/0048 2025-10-21T14:38:32.619811 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=14 -4014892/000/0001/R EE38432C8F79ACA1 0049/0049 2025-10-21T14:38:32.620015 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0001/R EE38432C8F79ACA1 0050/0050 2025-10-21T14:38:32.620035 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0051/0051 2025-10-21T14:38:32.620049 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0001/R EE38432C8F79ACA1 0052/0052 2025-10-21T14:38:32.620062 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0001/R EE38432C8F79ACA1 0053/0053 2025-10-21T14:38:32.620074 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0054/0054 2025-10-21T14:38:32.620218 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=15 -4014892/000/0001/R EE38432C8F79ACA1 0055/0055 2025-10-21T14:38:54.141235 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=16 -4014892/000/0001/R EE38432C8F79ACA1 0056/0056 2025-10-21T14:38:54.141379 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0001/R EE38432C8F79ACA1 0057/0057 2025-10-21T14:38:54.141416 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0058/0058 2025-10-21T14:38:54.141428 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0001/R EE38432C8F79ACA1 0059/0059 2025-10-21T14:38:54.141439 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0001/R EE38432C8F79ACA1 0060/0060 2025-10-21T14:38:54.141449 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0061/0061 2025-10-21T14:38:54.141594 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=17 -4014892/000/0001/R EE38432C8F79ACA1 0062/0062 2025-10-21T14:39:29.839778 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=18 -4014892/000/0001/R EE38432C8F79ACA1 0063/0063 2025-10-21T14:39:29.839923 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0001/R EE38432C8F79ACA1 0064/0064 2025-10-21T14:39:29.839938 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0065/0065 2025-10-21T14:39:29.839949 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0001/R EE38432C8F79ACA1 0066/0066 2025-10-21T14:39:29.839961 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0001/R EE38432C8F79ACA1 0067/0067 2025-10-21T14:39:29.839972 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0068/0068 2025-10-21T14:39:29.840102 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=19 -4014892/000/0001/R EE38432C8F79ACA1 0069/0069 2025-10-21T14:40:03.404449 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test extra issued_subhit=20 -4014892/000/0001/R EE38432C8F79ACA1 0070/0070 2025-10-21T14:40:03.404594 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0001/R EE38432C8F79ACA1 0071/0071 2025-10-21T14:41:01.789493 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0001/R EE38432C8F79ACA1 0072/0072 2025-10-21T14:41:01.789524 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0001/R EE38432C8F79ACA1 0073/0073 2025-10-21T14:41:01.789536 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0001/R EE38432C8F79ACA1 0074/0074 2025-10-21T14:41:01.789547 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0001/RE EE38432C8F79ACA1 0075/0075 2025-10-21T14:41:01.789870 codethink04-arm64 UNK_CLIENT EE38432C8F79ACA1_0001SID setupfactory_unit_test request-stop 200 179.028736829 0 0 -4014892/000/0002/RB EE38432C8F79ACA1 0076/0076 2025-10-21T14:41:01.790345 codethink04-arm64 UNK_CLIENT UNK_SESSION setupfactory_unit_test request-start test_name=CreateScoreBlockMaskedSequence&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4014892/000/0002/R EE38432C8F79ACA1 0077/0077 2025-10-21T14:41:01.790485 codethink04-arm64 UNK_CLIENT UNK_SESSION setupfactory_unit_test extra ncbi_phid=EE38432C8F79ACA10000000000020002 -4014892/000/0002/R EE38432C8F79ACA1 0078/0078 2025-10-21T14:41:01.790497 codethink04-arm64 UNK_CLIENT UNK_SESSION setupfactory_unit_test extra issued_subhit=1 -4014892/000/0002/R EE38432C8F79ACA1 0079/0079 2025-10-21T14:41:31.891136 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test extra issued_subhit=2 -4014892/000/0002/R EE38432C8F79ACA1 0080/0080 2025-10-21T14:41:31.891306 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0002/R EE38432C8F79ACA1 0081/0081 2025-10-21T14:41:31.891322 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0002/R EE38432C8F79ACA1 0082/0082 2025-10-21T14:41:31.891334 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0002/R EE38432C8F79ACA1 0083/0083 2025-10-21T14:41:31.891345 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0002/R EE38432C8F79ACA1 0084/0084 2025-10-21T14:41:31.891355 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0002/R EE38432C8F79ACA1 0085/0085 2025-10-21T14:42:59.251787 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test extra issued_subhit=3 -4014892/000/0002/R EE38432C8F79ACA1 0086/0086 2025-10-21T14:43:34.594608 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test extra issued_subhit=4 -4014892/000/0002/R EE38432C8F79ACA1 0087/0087 2025-10-21T14:43:34.594752 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0002/R EE38432C8F79ACA1 0088/0088 2025-10-21T14:43:34.594767 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0002/R EE38432C8F79ACA1 0089/0089 2025-10-21T14:43:34.594778 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0002/R EE38432C8F79ACA1 0090/0090 2025-10-21T14:43:34.594789 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0002/R EE38432C8F79ACA1 0091/0091 2025-10-21T14:43:34.594800 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0002/R EE38432C8F79ACA1 0092/0092 2025-10-21T14:43:34.594932 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test extra issued_subhit=5 -4014892/000/0002/R EE38432C8F79ACA1 0093/0093 2025-10-21T14:44:04.657769 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test extra issued_subhit=6 -4014892/000/0002/R EE38432C8F79ACA1 0094/0094 2025-10-21T14:44:04.657916 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#13000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0002/R EE38432C8F79ACA1 0095/0095 2025-10-21T14:44:04.657931 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0002/R EE38432C8F79ACA1 0096/0096 2025-10-21T14:44:04.657943 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0002/R EE38432C8F79ACA1 0097/0097 2025-10-21T14:44:04.657954 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0002/R EE38432C8F79ACA1 0098/0098 2025-10-21T14:44:04.657964 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0002/R EE38432C8F79ACA1 0099/0099 2025-10-21T14:44:04.658110 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test extra issued_subhit=7 -4014892/000/0002/R EE38432C8F79ACA1 0100/0100 2025-10-21T14:44:40.880835 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test extra issued_subhit=8 -4014892/000/0002/R EE38432C8F79ACA1 0101/0101 2025-10-21T14:44:40.880977 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#14000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0002/R EE38432C8F79ACA1 0102/0102 2025-10-21T14:44:40.880992 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0002/R EE38432C8F79ACA1 0103/0103 2025-10-21T14:44:40.881005 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0002/R EE38432C8F79ACA1 0104/0104 2025-10-21T14:44:40.881015 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0002/R EE38432C8F79ACA1 0105/0105 2025-10-21T14:44:40.881026 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0002/R EE38432C8F79ACA1 0106/0106 2025-10-21T14:44:40.881151 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test extra issued_subhit=9 -4014892/000/0002/R EE38432C8F79ACA1 0107/0107 2025-10-21T14:45:11.086782 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test extra issued_subhit=10 -4014892/000/0002/R EE38432C8F79ACA1 0108/0108 2025-10-21T14:45:11.086924 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#15000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0002/R EE38432C8F79ACA1 0109/0109 2025-10-21T14:45:11.086938 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0002/R EE38432C8F79ACA1 0110/0110 2025-10-21T14:45:11.086950 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0002/R EE38432C8F79ACA1 0111/0111 2025-10-21T14:45:11.086961 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0002/R EE38432C8F79ACA1 0112/0112 2025-10-21T14:45:11.086972 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0002/R EE38432C8F79ACA1 0113/0113 2025-10-21T14:46:10.383291 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: BLAST(CBlastException::eInvalid) "blast_setup_cxx.cpp", line 651: ncbi::blast::SetupQueries_OMF() --- Warning: failed to send request: NULL -4014892/000/0002/R EE38432C8F79ACA1 0114/0114 2025-10-21T14:46:10.383313 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test Error: BLAST "setupfactory_unit_test.cpp", line 82: setup_factory::CreateScoreBlockMaskedSequence_invoker() --- Uncaught exception in "CreateScoreBlockMaskedSequence"(CBlastException::eInvalid) Warning: failed to send request: NULL -4014892/000/0002/RE EE38432C8F79ACA1 0116/0116 2025-10-21T14:46:10.383353 codethink04-arm64 UNK_CLIENT EE38432C8F79B9B1_0002SID setupfactory_unit_test request-stop 500 308.593012094 0 0 -unknown location(0): fatal error: in "setup_factory/CreateScoreBlockMaskedSequence": NCBI C++ Exception: - Error: BLAST(CBlastException::eInvalid) "./c++/src/algo/blast/api/blast_setup_cxx.cpp", line 651: ncbi::blast::SetupQueries_OMF() --- Warning: failed to send request: NULL - -./c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp(82): last checkpoint: "CreateScoreBlockMaskedSequence" entry. -4014892/000/0003/RB EE38432C8F79ACA1 0117/0117 2025-10-21T14:46:10.383842 codethink04-arm64 UNK_CLIENT UNK_SESSION setupfactory_unit_test request-start test_name=CreateScoreBlockOK&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4014892/000/0003/R EE38432C8F79ACA1 0118/0118 2025-10-21T14:46:10.383914 codethink04-arm64 UNK_CLIENT UNK_SESSION setupfactory_unit_test extra ncbi_phid=EE38432C8F79ACA10000000000030003 -4014892/000/0003/R EE38432C8F79ACA1 0119/0119 2025-10-21T14:46:10.383925 codethink04-arm64 UNK_CLIENT UNK_SESSION setupfactory_unit_test extra issued_subhit=1 -4014892/000/0003/R EE38432C8F79ACA1 0120/0120 2025-10-21T14:46:40.404268 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test extra issued_subhit=2 -4014892/000/0003/R EE38432C8F79ACA1 0121/0121 2025-10-21T14:46:57.656746 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#16000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0003/R EE38432C8F79ACA1 0122/0122 2025-10-21T14:46:57.656777 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0003/R EE38432C8F79ACA1 0123/0123 2025-10-21T14:46:57.656793 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0003/R EE38432C8F79ACA1 0124/0124 2025-10-21T14:46:57.656806 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0003/R EE38432C8F79ACA1 0125/0125 2025-10-21T14:46:57.656818 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0003/R EE38432C8F79ACA1 0126/0126 2025-10-21T14:46:57.656944 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test extra issued_subhit=3 -4014892/000/0003/R EE38432C8F79ACA1 0127/0127 2025-10-21T14:47:27.657554 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test extra issued_subhit=4 -4014892/000/0003/R EE38432C8F79ACA1 0128/0128 2025-10-21T14:47:27.657712 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#17000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0003/R EE38432C8F79ACA1 0129/0129 2025-10-21T14:47:27.657730 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0003/R EE38432C8F79ACA1 0130/0130 2025-10-21T14:47:27.657743 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0003/R EE38432C8F79ACA1 0131/0131 2025-10-21T14:47:27.657757 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0003/R EE38432C8F79ACA1 0132/0132 2025-10-21T14:47:27.657769 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0003/R EE38432C8F79ACA1 0133/0133 2025-10-21T14:47:27.657910 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test extra issued_subhit=5 -4014892/000/0003/R EE38432C8F79ACA1 0134/0134 2025-10-21T14:47:57.658693 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test extra issued_subhit=6 -4014892/000/0003/R EE38432C8F79ACA1 0135/0135 2025-10-21T14:47:57.658848 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#18000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0003/R EE38432C8F79ACA1 0136/0136 2025-10-21T14:47:57.658864 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0003/R EE38432C8F79ACA1 0137/0137 2025-10-21T14:47:57.658877 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0003/R EE38432C8F79ACA1 0138/0138 2025-10-21T14:47:57.658889 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0003/R EE38432C8F79ACA1 0139/0139 2025-10-21T14:47:57.658900 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0003/R EE38432C8F79ACA1 0140/0140 2025-10-21T14:47:57.659040 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test extra issued_subhit=7 -4014892/000/0003/R EE38432C8F79ACA1 0141/0141 2025-10-21T14:48:27.659520 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test extra issued_subhit=8 -4014892/000/0003/R EE38432C8F79ACA1 0142/0142 2025-10-21T14:48:27.659676 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#19000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0003/R EE38432C8F79ACA1 0143/0143 2025-10-21T14:48:27.659692 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0003/R EE38432C8F79ACA1 0144/0144 2025-10-21T14:48:27.659705 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0003/R EE38432C8F79ACA1 0145/0145 2025-10-21T14:48:27.659717 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0003/R EE38432C8F79ACA1 0146/0146 2025-10-21T14:48:27.659729 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0003/R EE38432C8F79ACA1 0147/0147 2025-10-21T14:48:27.659853 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test extra issued_subhit=9 -4014892/000/0003/R EE38432C8F79ACA1 0148/0148 2025-10-21T14:48:57.660274 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test extra issued_subhit=10 -4014892/000/0003/R EE38432C8F79ACA1 0149/0149 2025-10-21T14:48:57.660427 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#20000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4014892/000/0003/R EE38432C8F79ACA1 0150/0150 2025-10-21T14:48:57.660443 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4014892/000/0003/R EE38432C8F79ACA1 0151/0151 2025-10-21T14:48:57.660456 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4014892/000/0003/R EE38432C8F79ACA1 0152/0152 2025-10-21T14:48:57.660468 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4014892/000/0003/R EE38432C8F79ACA1 0153/0153 2025-10-21T14:48:57.660479 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4014892/000/0003/R EE38432C8F79ACA1 0154/0154 2025-10-21T14:48:57.660715 codethink04-arm64 UNK_CLIENT EE38432C8F79CD01_0003SID setupfactory_unit_test extra issued_subhit=11 - -Maximum execution time of 200 second(s) is exceeded - -real 682.46 -user 0.13 -sys 255.81 -Start time : 10/21/2025 14:38:01 -Stop time : 10/21/2025 14:49:24 -Load averages: 31.33 52.14 47.80 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -search_strategy_unit_test -====================================================================== - -4056390/000/0000/PB EE38E5468F79D741 0001/0001 2025-10-21T14:49:24.316009 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/search_strategy_unit_test -4056390/000/0000/PB EE38E5468F79D741 0002/0002 2025-10-21T14:49:24.316187 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/search_strategy_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 14 test cases... -4056390/000/0001/RB EE38E5468F79D741 0003/0003 2025-10-21T14:49:24.317774 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test request-start test_name=emptyInput&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4056390/000/0001/RE EE38E5468F79D741 0004/0004 2025-10-21T14:49:24.318964 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test request-stop 200 0.001182079 0 0 -4056390/000/0002/RB EE38E5468F79D741 0005/0005 2025-10-21T14:49:24.319348 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test request-start test_name=testMegablast&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4056390/000/0002/RE EE38E5468F79D741 0006/0006 2025-10-21T14:49:24.332061 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test request-stop 200 0.012696981 0 0 -4056390/000/0003/RB EE38E5468F79D741 0007/0007 2025-10-21T14:49:24.332421 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test request-start test_name=testBlastp&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4056390/000/0003/RE EE38E5468F79D741 0008/0008 2025-10-21T14:49:24.336463 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test request-stop 200 0.004027843 0 0 -4056390/000/0004/RB EE38E5468F79D741 0009/0009 2025-10-21T14:49:24.336830 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test request-start test_name=testBlastnBl2seq&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4056390/000/0004/RE EE38E5468F79D741 0010/0010 2025-10-21T14:49:24.337585 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test request-stop 200 0.000750064 0 0 -4056390/000/0005/RB EE38E5468F79D741 0011/0011 2025-10-21T14:49:24.337885 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test request-start test_name=LoadWebPsiBlastSearchStrategyAfterRound1&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4056390/000/0005/RE EE38E5468F79D741 0012/0012 2025-10-21T14:49:24.340103 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test request-stop 200 0.002201080 0 0 -4056390/000/0006/RB EE38E5468F79D741 0013/0013 2025-10-21T14:49:24.340464 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test request-start test_name=LoadWebPsiBlastSearchStrategyAfterRound2&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4056390/000/0006/RE EE38E5468F79D741 0014/0014 2025-10-21T14:49:24.346018 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test request-stop 200 0.005541086 0 0 -4056390/000/0007/RB EE38E5468F79D741 0015/0015 2025-10-21T14:49:24.346385 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test request-start test_name=LoadPhiBlastSearchStrategy&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4056390/000/0007/RE EE38E5468F79D741 0016/0016 2025-10-21T14:49:24.351447 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test request-stop 200 0.005046129 0 0 -4056390/000/0008/RB EE38E5468F79D741 0017/0017 2025-10-21T14:49:24.351809 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test request-start test_name=ExportStrategy_FullQuery&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4056390/000/0008/R EE38E5468F79D741 0018/0018 2025-10-21T14:49:24.352385 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test extra ncbi_phid=EE38E5468F79D7410000000000080001 -4056390/000/0008/R EE38E5468F79D741 0019/0019 2025-10-21T14:49:24.352409 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test extra issued_subhit=1 -4056390/000/0008/R EE38E5468F79D741 0020/0020 2025-10-21T14:49:24.352802 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=2 -4056390/000/0008/R EE38E5468F79D741 0021/0021 2025-10-21T14:49:24.352926 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4056390/000/0008/R EE38E5468F79D741 0022/0022 2025-10-21T14:49:24.352954 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4056390/000/0008/R EE38E5468F79D741 0023/0023 2025-10-21T14:49:24.352966 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4056390/000/0008/R EE38E5468F79D741 0024/0024 2025-10-21T14:49:24.352975 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4056390/000/0008/R EE38E5468F79D741 0025/0025 2025-10-21T14:49:24.352984 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4056390/000/0008/R EE38E5468F79D741 0026/0026 2025-10-21T14:49:24.353112 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=3 -4056390/000/0008/R EE38E5468F79D741 0027/0027 2025-10-21T14:49:24.353293 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=4 -4056390/000/0008/R EE38E5468F79D741 0028/0028 2025-10-21T14:49:24.353370 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4056390/000/0008/R EE38E5468F79D741 0029/0029 2025-10-21T14:49:24.353381 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4056390/000/0008/R EE38E5468F79D741 0030/0030 2025-10-21T14:49:24.353390 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4056390/000/0008/R EE38E5468F79D741 0031/0031 2025-10-21T14:49:24.353398 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4056390/000/0008/R EE38E5468F79D741 0032/0032 2025-10-21T14:49:24.353412 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4056390/000/0008/R EE38E5468F79D741 0033/0033 2025-10-21T14:49:24.353477 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=5 -4056390/000/0008/R EE38E5468F79D741 0034/0034 2025-10-21T14:49:25.353872 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=6 -4056390/000/0008/R EE38E5468F79D741 0035/0035 2025-10-21T14:49:25.354038 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4056390/000/0008/R EE38E5468F79D741 0036/0036 2025-10-21T14:49:25.354054 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4056390/000/0008/R EE38E5468F79D741 0037/0037 2025-10-21T14:49:25.354065 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4056390/000/0008/R EE38E5468F79D741 0038/0038 2025-10-21T14:49:25.354074 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4056390/000/0008/R EE38E5468F79D741 0039/0039 2025-10-21T14:49:25.354084 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4056390/000/0008/R EE38E5468F79D741 0040/0040 2025-10-21T14:49:25.354198 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=7 -4056390/000/0008/R EE38E5468F79D741 0041/0041 2025-10-21T14:49:27.854597 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=8 -4056390/000/0008/R EE38E5468F79D741 0042/0042 2025-10-21T14:49:27.854735 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4056390/000/0008/R EE38E5468F79D741 0043/0043 2025-10-21T14:49:27.854751 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4056390/000/0008/R EE38E5468F79D741 0044/0044 2025-10-21T14:49:27.854762 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4056390/000/0008/R EE38E5468F79D741 0045/0045 2025-10-21T14:49:27.854771 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4056390/000/0008/R EE38E5468F79D741 0046/0046 2025-10-21T14:49:27.854789 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4056390/000/0008/R EE38E5468F79D741 0047/0047 2025-10-21T14:49:27.854904 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=9 -4056390/000/0008/R EE38E5468F79D741 0048/0048 2025-10-21T14:49:32.605303 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=10 -4056390/000/0008/R EE38E5468F79D741 0049/0049 2025-10-21T14:49:32.605444 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4056390/000/0008/R EE38E5468F79D741 0050/0050 2025-10-21T14:49:32.605459 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4056390/000/0008/R EE38E5468F79D741 0051/0051 2025-10-21T14:49:32.605471 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4056390/000/0008/R EE38E5468F79D741 0052/0052 2025-10-21T14:49:32.605481 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4056390/000/0008/R EE38E5468F79D741 0053/0053 2025-10-21T14:49:32.605491 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4056390/000/0008/R EE38E5468F79D741 0054/0054 2025-10-21T14:49:32.605743 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=11 -4056390/000/0008/R EE38E5468F79D741 0055/0055 2025-10-21T14:49:40.731395 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=12 -4056390/000/0008/R EE38E5468F79D741 0056/0056 2025-10-21T14:49:40.731566 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4056390/000/0008/R EE38E5468F79D741 0057/0057 2025-10-21T14:49:40.731584 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4056390/000/0008/R EE38E5468F79D741 0058/0058 2025-10-21T14:49:40.731598 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4056390/000/0008/R EE38E5468F79D741 0059/0059 2025-10-21T14:49:40.731615 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4056390/000/0008/R EE38E5468F79D741 0060/0060 2025-10-21T14:49:40.731626 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4056390/000/0008/R EE38E5468F79D741 0061/0061 2025-10-21T14:49:40.731764 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=13 -4056390/000/0008/R EE38E5468F79D741 0062/0062 2025-10-21T14:49:53.919661 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=14 -4056390/000/0008/R EE38E5468F79D741 0063/0063 2025-10-21T14:49:53.919805 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4056390/000/0008/R EE38E5468F79D741 0064/0064 2025-10-21T14:49:53.919820 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4056390/000/0008/R EE38E5468F79D741 0065/0065 2025-10-21T14:49:53.919831 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4056390/000/0008/R EE38E5468F79D741 0066/0066 2025-10-21T14:49:53.919840 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4056390/000/0008/R EE38E5468F79D741 0067/0067 2025-10-21T14:49:53.919851 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4056390/000/0008/R EE38E5468F79D741 0068/0068 2025-10-21T14:49:53.919981 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=15 -4056390/000/0008/R EE38E5468F79D741 0069/0069 2025-10-21T14:50:14.701955 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=16 -4056390/000/0008/R EE38E5468F79D741 0070/0070 2025-10-21T14:50:14.702198 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4056390/000/0008/R EE38E5468F79D741 0071/0071 2025-10-21T14:50:14.702230 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4056390/000/0008/R EE38E5468F79D741 0072/0072 2025-10-21T14:50:14.702257 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4056390/000/0008/R EE38E5468F79D741 0073/0073 2025-10-21T14:50:14.979977 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4056390/000/0008/R EE38E5468F79D741 0074/0074 2025-10-21T14:50:14.980027 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4056390/000/0008/R EE38E5468F79D741 0075/0075 2025-10-21T14:50:14.980281 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=17 -4056390/000/0008/R EE38E5468F79D741 0076/0076 2025-10-21T14:50:44.981042 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=18 -4056390/000/0008/R EE38E5468F79D741 0077/0077 2025-10-21T14:50:44.981283 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4056390/000/0008/R EE38E5468F79D741 0078/0078 2025-10-21T14:50:44.981316 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4056390/000/0008/R EE38E5468F79D741 0079/0079 2025-10-21T14:50:44.981342 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4056390/000/0008/R EE38E5468F79D741 0080/0080 2025-10-21T14:50:44.981367 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4056390/000/0008/R EE38E5468F79D741 0081/0081 2025-10-21T14:50:44.981390 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4056390/000/0008/R EE38E5468F79D741 0082/0082 2025-10-21T14:50:44.981626 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=19 -4056390/000/0008/R EE38E5468F79D741 0083/0083 2025-10-21T14:51:14.982064 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test extra issued_subhit=20 -4056390/000/0008/R EE38E5468F79D741 0084/0084 2025-10-21T14:51:14.982209 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4056390/000/0008/R EE38E5468F79D741 0085/0085 2025-10-21T14:51:14.982225 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4056390/000/0008/R EE38E5468F79D741 0086/0086 2025-10-21T14:51:14.982235 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4056390/000/0008/R EE38E5468F79D741 0087/0087 2025-10-21T14:51:14.982253 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4056390/000/0008/R EE38E5468F79D741 0088/0088 2025-10-21T14:51:14.982263 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4056390/000/0008/R EE38E5468F79D741 0089/0089 2025-10-21T14:51:14.982882 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 -4056390/000/0008/R EE38E5468F79D741 0090/0090 2025-10-21T14:51:14.982902 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: GENBANK(CLoaderException::eConnectionFailed) "reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|555)) -4056390/000/0008/R EE38E5468F79D741 0091/0091 2025-10-21T14:51:14.982910 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test Error: BLAST "search_strategy_unit_test.cpp", line 283: search_strategy::ExportStrategy_FullQuery_invoker() --- Uncaught exception in "ExportStrategy_FullQuery"(CLoaderException::eConnectionFailed) failed to send request: NULL (in GetRecords(gi|555)) -4056390/000/0008/RE EE38E5468F79D741 0094/0094 2025-10-21T14:51:14.982955 codethink04-arm64 UNK_CLIENT EE38E5468F79D741_0008SID search_strategy_unit_test request-stop 500 110.631147861 0 0 -unknown location(0): fatal error: in "search_strategy/ExportStrategy_FullQuery": NCBI C++ Exception: - Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 - Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|555)) - -./c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp(283): last checkpoint: "ExportStrategy_FullQuery" entry. -4056390/000/0009/RB EE38E5468F79D741 0095/0095 2025-10-21T14:51:14.983392 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test request-start test_name=ExportStrategy_QueryWithRange&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4056390/000/0009/R EE38E5468F79D741 0096/0096 2025-10-21T14:51:14.983546 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test extra ncbi_phid=EE38E5468F79D7410000000000090002 -4056390/000/0009/R EE38E5468F79D741 0097/0097 2025-10-21T14:51:14.983561 codethink04-arm64 UNK_CLIENT UNK_SESSION search_strategy_unit_test extra issued_subhit=1 -4056390/000/0009/R EE38E5468F79D741 0098/0098 2025-10-21T14:51:44.983967 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test extra issued_subhit=2 -4056390/000/0009/R EE38E5468F79D741 0099/0099 2025-10-21T14:51:44.984115 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4056390/000/0009/R EE38E5468F79D741 0100/0100 2025-10-21T14:51:44.984131 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4056390/000/0009/R EE38E5468F79D741 0101/0101 2025-10-21T14:51:44.984150 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4056390/000/0009/R EE38E5468F79D741 0102/0102 2025-10-21T14:51:44.984160 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4056390/000/0009/R EE38E5468F79D741 0103/0103 2025-10-21T14:51:44.984170 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4056390/000/0009/R EE38E5468F79D741 0104/0104 2025-10-21T14:51:44.984298 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test extra issued_subhit=3 -4056390/000/0009/R EE38E5468F79D741 0105/0105 2025-10-21T14:52:14.984697 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test extra issued_subhit=4 -4056390/000/0009/R EE38E5468F79D741 0106/0106 2025-10-21T14:52:14.984848 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4056390/000/0009/R EE38E5468F79D741 0107/0107 2025-10-21T14:52:14.984862 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4056390/000/0009/R EE38E5468F79D741 0108/0108 2025-10-21T14:52:14.984873 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4056390/000/0009/R EE38E5468F79D741 0109/0109 2025-10-21T14:52:14.984883 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4056390/000/0009/R EE38E5468F79D741 0110/0110 2025-10-21T14:52:14.984893 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4056390/000/0009/R EE38E5468F79D741 0111/0111 2025-10-21T14:52:14.985022 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test extra issued_subhit=5 -4056390/000/0009/R EE38E5468F79D741 0112/0112 2025-10-21T14:52:44.985427 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test extra issued_subhit=6 -4056390/000/0009/R EE38E5468F79D741 0113/0113 2025-10-21T14:52:44.985573 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#13000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4056390/000/0009/R EE38E5468F79D741 0114/0114 2025-10-21T14:52:44.985588 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4056390/000/0009/R EE38E5468F79D741 0115/0115 2025-10-21T14:52:44.985608 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4056390/000/0009/R EE38E5468F79D741 0116/0116 2025-10-21T14:52:44.985617 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4056390/000/0009/R EE38E5468F79D741 0117/0117 2025-10-21T14:52:44.985628 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4056390/000/0009/R EE38E5468F79D741 0118/0118 2025-10-21T14:52:44.985757 codethink04-arm64 UNK_CLIENT EE38E5468F79E001_0009SID search_strategy_unit_test extra issued_subhit=7 - -Maximum execution time of 200 second(s) is exceeded - -real 205.75 -user 0.08 -sys 0.06 -Start time : 10/21/2025 14:49:24 -Stop time : 10/21/2025 14:52:49 -Load averages: 26.72 39.90 43.82 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -redoalignment_unit_test -====================================================================== - -4068102/000/0000/PB EE3813068F79E421 0001/0001 2025-10-21T14:52:50.148918 codethink04-arm64 UNK_CLIENT UNK_SESSION redoalignment_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/redoalignment_unit_test -4068102/000/0000/PB EE3813068F79E421 0002/0002 2025-10-21T14:52:50.149110 codethink04-arm64 UNK_CLIENT UNK_SESSION redoalignment_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/redoalignment_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 8 test cases... -4068102/000/0001/RB EE3813068F79E421 0003/0003 2025-10-21T14:52:50.150803 codethink04-arm64 UNK_CLIENT UNK_SESSION redoalignment_unit_test request-start test_name=testRedoAlignmentWithCompBasedStats&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4068102/000/0001/R EE3813068F79E421 0004/0004 2025-10-21T14:52:50.152233 codethink04-arm64 UNK_CLIENT UNK_SESSION redoalignment_unit_test extra ncbi_phid=EE3813068F79E4210000000000010001 -4068102/000/0001/R EE3813068F79E421 0005/0005 2025-10-21T14:52:50.152273 codethink04-arm64 UNK_CLIENT UNK_SESSION redoalignment_unit_test extra issued_subhit=1 -4068102/000/0001/R EE3813068F79E421 0006/0006 2025-10-21T14:52:50.152732 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=2 -4068102/000/0001/R EE3813068F79E421 0007/0007 2025-10-21T14:52:50.152873 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4068102/000/0001/R EE3813068F79E421 0008/0008 2025-10-21T14:52:50.152900 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4068102/000/0001/R EE3813068F79E421 0009/0009 2025-10-21T14:52:50.152912 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4068102/000/0001/R EE3813068F79E421 0010/0010 2025-10-21T14:52:50.152921 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4068102/000/0001/R EE3813068F79E421 0011/0011 2025-10-21T14:52:50.152932 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4068102/000/0001/R EE3813068F79E421 0012/0012 2025-10-21T14:52:50.153125 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=3 -4068102/000/0001/R EE3813068F79E421 0013/0013 2025-10-21T14:52:50.153341 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=4 -4068102/000/0001/R EE3813068F79E421 0014/0014 2025-10-21T14:52:50.153441 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4068102/000/0001/R EE3813068F79E421 0015/0015 2025-10-21T14:52:50.153454 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4068102/000/0001/R EE3813068F79E421 0016/0016 2025-10-21T14:52:50.153473 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4068102/000/0001/R EE3813068F79E421 0017/0017 2025-10-21T14:52:50.153482 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4068102/000/0001/R EE3813068F79E421 0018/0018 2025-10-21T14:52:50.153490 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4068102/000/0001/R EE3813068F79E421 0019/0019 2025-10-21T14:52:50.153561 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=5 -4068102/000/0001/R EE3813068F79E421 0020/0020 2025-10-21T14:52:51.154025 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=6 -4068102/000/0001/R EE3813068F79E421 0021/0021 2025-10-21T14:52:51.154195 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4068102/000/0001/R EE3813068F79E421 0022/0022 2025-10-21T14:52:51.154211 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4068102/000/0001/R EE3813068F79E421 0023/0023 2025-10-21T14:52:51.154222 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4068102/000/0001/R EE3813068F79E421 0024/0024 2025-10-21T14:52:51.154232 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4068102/000/0001/R EE3813068F79E421 0025/0025 2025-10-21T14:52:51.154242 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4068102/000/0001/R EE3813068F79E421 0026/0026 2025-10-21T14:52:51.154364 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=7 -4068102/000/0001/R EE3813068F79E421 0027/0027 2025-10-21T14:52:53.654797 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=8 -4068102/000/0001/R EE3813068F79E421 0028/0028 2025-10-21T14:52:53.654946 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4068102/000/0001/R EE3813068F79E421 0029/0029 2025-10-21T14:52:53.654968 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4068102/000/0001/R EE3813068F79E421 0030/0030 2025-10-21T14:52:53.654979 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4068102/000/0001/R EE3813068F79E421 0031/0031 2025-10-21T14:52:53.654988 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4068102/000/0001/R EE3813068F79E421 0032/0032 2025-10-21T14:52:53.654998 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4068102/000/0001/R EE3813068F79E421 0033/0033 2025-10-21T14:52:53.655114 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=9 -4068102/000/0001/R EE3813068F79E421 0034/0034 2025-10-21T14:52:58.405553 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=10 -4068102/000/0001/R EE3813068F79E421 0035/0035 2025-10-21T14:52:58.405707 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4068102/000/0001/R EE3813068F79E421 0036/0036 2025-10-21T14:52:58.405722 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4068102/000/0001/R EE3813068F79E421 0037/0037 2025-10-21T14:52:58.405733 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4068102/000/0001/R EE3813068F79E421 0038/0038 2025-10-21T14:52:58.405742 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4068102/000/0001/R EE3813068F79E421 0039/0039 2025-10-21T14:52:58.405753 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4068102/000/0001/R EE3813068F79E421 0040/0040 2025-10-21T14:52:58.405925 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=11 -4068102/000/0001/R EE3813068F79E421 0041/0041 2025-10-21T14:53:06.531384 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=12 -4068102/000/0001/R EE3813068F79E421 0042/0042 2025-10-21T14:53:06.531535 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4068102/000/0001/R EE3813068F79E421 0043/0043 2025-10-21T14:53:06.531561 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4068102/000/0001/R EE3813068F79E421 0044/0044 2025-10-21T14:53:06.531573 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4068102/000/0001/R EE3813068F79E421 0045/0045 2025-10-21T14:53:06.531583 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4068102/000/0001/R EE3813068F79E421 0046/0046 2025-10-21T14:53:06.531593 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4068102/000/0001/R EE3813068F79E421 0047/0047 2025-10-21T14:53:06.531720 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=13 -4068102/000/0001/R EE3813068F79E421 0048/0048 2025-10-21T14:53:19.719630 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=14 -4068102/000/0001/R EE3813068F79E421 0049/0049 2025-10-21T14:53:19.719774 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4068102/000/0001/R EE3813068F79E421 0050/0050 2025-10-21T14:53:19.719788 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4068102/000/0001/R EE3813068F79E421 0051/0051 2025-10-21T14:53:19.719800 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4068102/000/0001/R EE3813068F79E421 0052/0052 2025-10-21T14:53:19.719811 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4068102/000/0001/R EE3813068F79E421 0053/0053 2025-10-21T14:53:19.719821 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4068102/000/0001/R EE3813068F79E421 0054/0054 2025-10-21T14:53:19.719936 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=15 -4068102/000/0001/R EE3813068F79E421 0055/0055 2025-10-21T14:53:40.501993 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=16 -4068102/000/0001/R EE3813068F79E421 0056/0056 2025-10-21T14:53:40.502257 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4068102/000/0001/R EE3813068F79E421 0057/0057 2025-10-21T14:53:40.502303 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4068102/000/0001/R EE3813068F79E421 0058/0058 2025-10-21T14:53:40.502330 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4068102/000/0001/R EE3813068F79E421 0059/0059 2025-10-21T14:53:40.502354 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4068102/000/0001/R EE3813068F79E421 0060/0060 2025-10-21T14:53:40.502378 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4068102/000/0001/R EE3813068F79E421 0061/0061 2025-10-21T14:53:40.502605 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=17 -4068102/000/0001/R EE3813068F79E421 0062/0062 2025-10-21T14:54:10.503306 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=18 -4068102/000/0001/R EE3813068F79E421 0063/0063 2025-10-21T14:54:10.503523 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4068102/000/0001/R EE3813068F79E421 0064/0064 2025-10-21T14:54:10.503551 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4068102/000/0001/R EE3813068F79E421 0065/0065 2025-10-21T14:54:10.503572 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4068102/000/0001/R EE3813068F79E421 0066/0066 2025-10-21T14:54:10.503592 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4068102/000/0001/R EE3813068F79E421 0067/0067 2025-10-21T14:54:10.503610 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4068102/000/0001/R EE3813068F79E421 0068/0068 2025-10-21T14:54:10.503797 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=19 -4068102/000/0001/R EE3813068F79E421 0069/0069 2025-10-21T14:54:40.504229 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=20 -4068102/000/0001/R EE3813068F79E421 0070/0070 2025-10-21T14:54:40.504382 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4068102/000/0001/R EE3813068F79E421 0071/0071 2025-10-21T14:54:40.504405 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4068102/000/0001/R EE3813068F79E421 0072/0072 2025-10-21T14:54:40.504417 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4068102/000/0001/R EE3813068F79E421 0073/0073 2025-10-21T14:54:40.504427 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4068102/000/0001/R EE3813068F79E421 0074/0074 2025-10-21T14:54:40.504438 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4068102/000/0001/R EE3813068F79E421 0075/0075 2025-10-21T14:54:40.506226 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=21 -4068102/000/0001/R EE3813068F79E421 0076/0076 2025-10-21T14:55:10.507292 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=22 -4068102/000/0001/R EE3813068F79E421 0077/0077 2025-10-21T14:55:10.507552 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4068102/000/0001/R EE3813068F79E421 0078/0078 2025-10-21T14:55:10.507585 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4068102/000/0001/R EE3813068F79E421 0079/0079 2025-10-21T14:55:10.507613 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4068102/000/0001/R EE3813068F79E421 0080/0080 2025-10-21T14:55:10.507638 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4068102/000/0001/R EE3813068F79E421 0081/0081 2025-10-21T14:55:10.507661 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4068102/000/0001/R EE3813068F79E421 0082/0082 2025-10-21T14:55:10.507902 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=23 -4068102/000/0001/R EE3813068F79E421 0083/0083 2025-10-21T14:55:40.508330 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=24 -4068102/000/0001/R EE3813068F79E421 0084/0084 2025-10-21T14:55:40.508482 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4068102/000/0001/R EE3813068F79E421 0085/0085 2025-10-21T14:55:40.508502 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4068102/000/0001/R EE3813068F79E421 0086/0086 2025-10-21T14:55:40.508513 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4068102/000/0001/R EE3813068F79E421 0087/0087 2025-10-21T14:55:40.508523 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4068102/000/0001/R EE3813068F79E421 0088/0088 2025-10-21T14:55:40.508534 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4068102/000/0001/R EE3813068F79E421 0089/0089 2025-10-21T14:55:40.508666 codethink04-arm64 UNK_CLIENT EE3813068F79E421_0001SID redoalignment_unit_test extra issued_subhit=25 - -Maximum execution time of 200 second(s) is exceeded - -real 200.16 -user 0.16 -sys 0.06 -Start time : 10/21/2025 14:52:50 -Stop time : 10/21/2025 14:56:10 -Load averages: 16.65 26.61 37.69 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -queryinfo_unit_test -====================================================================== - -4102631/000/0000/PB EE3899E78F79F0A1 0001/0001 2025-10-21T14:56:10.391308 codethink04-arm64 UNK_CLIENT UNK_SESSION queryinfo_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/queryinfo_unit_test -4102631/000/0000/PB EE3899E78F79F0A1 0002/0002 2025-10-21T14:56:10.391542 codethink04-arm64 UNK_CLIENT UNK_SESSION queryinfo_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/queryinfo_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 6 test cases... -4102631/000/0001/RB EE3899E78F79F0A1 0003/0003 2025-10-21T14:56:10.393152 codethink04-arm64 UNK_CLIENT UNK_SESSION queryinfo_unit_test request-start test_name=ProteinGetQueryInfo&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4102631/000/0001/R EE3899E78F79F0A1 0004/0004 2025-10-21T14:56:10.393777 codethink04-arm64 UNK_CLIENT UNK_SESSION queryinfo_unit_test extra ncbi_phid=EE3899E78F79F0A10000000000010001 -4102631/000/0001/R EE3899E78F79F0A1 0005/0005 2025-10-21T14:56:10.393804 codethink04-arm64 UNK_CLIENT UNK_SESSION queryinfo_unit_test extra issued_subhit=1 -4102631/000/0001/R EE3899E78F79F0A1 0006/0006 2025-10-21T14:56:10.394241 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test extra issued_subhit=2 -4102631/000/0001/R EE3899E78F79F0A1 0007/0007 2025-10-21T14:56:10.394375 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4102631/000/0001/R EE3899E78F79F0A1 0008/0008 2025-10-21T14:56:10.394399 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4102631/000/0001/R EE3899E78F79F0A1 0009/0009 2025-10-21T14:56:10.394411 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4102631/000/0001/R EE3899E78F79F0A1 0010/0010 2025-10-21T14:56:10.394421 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4102631/000/0001/R EE3899E78F79F0A1 0011/0011 2025-10-21T14:56:10.394431 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4102631/000/0001/R EE3899E78F79F0A1 0012/0012 2025-10-21T14:56:10.394611 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test extra issued_subhit=3 -4102631/000/0001/R EE3899E78F79F0A1 0013/0013 2025-10-21T14:56:10.394805 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test extra issued_subhit=4 -4102631/000/0001/R EE3899E78F79F0A1 0014/0014 2025-10-21T14:56:10.394897 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4102631/000/0001/R EE3899E78F79F0A1 0015/0015 2025-10-21T14:56:10.394910 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4102631/000/0001/R EE3899E78F79F0A1 0016/0016 2025-10-21T14:56:10.394928 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4102631/000/0001/R EE3899E78F79F0A1 0017/0017 2025-10-21T14:56:10.394938 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4102631/000/0001/R EE3899E78F79F0A1 0018/0018 2025-10-21T14:56:10.394946 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4102631/000/0001/R EE3899E78F79F0A1 0019/0019 2025-10-21T14:56:10.395014 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test extra issued_subhit=5 -4102631/000/0001/R EE3899E78F79F0A1 0020/0020 2025-10-21T14:56:11.395420 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test extra issued_subhit=6 -4102631/000/0001/R EE3899E78F79F0A1 0021/0021 2025-10-21T14:56:11.395564 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4102631/000/0001/R EE3899E78F79F0A1 0022/0022 2025-10-21T14:56:11.395580 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4102631/000/0001/R EE3899E78F79F0A1 0023/0023 2025-10-21T14:56:11.395593 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4102631/000/0001/R EE3899E78F79F0A1 0024/0024 2025-10-21T14:56:11.395604 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4102631/000/0001/R EE3899E78F79F0A1 0025/0025 2025-10-21T14:56:11.395614 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4102631/000/0001/R EE3899E78F79F0A1 0026/0026 2025-10-21T14:56:11.395731 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test extra issued_subhit=7 -4102631/000/0001/R EE3899E78F79F0A1 0027/0027 2025-10-21T14:56:13.896152 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test extra issued_subhit=8 -4102631/000/0001/R EE3899E78F79F0A1 0028/0028 2025-10-21T14:56:13.896298 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4102631/000/0001/R EE3899E78F79F0A1 0029/0029 2025-10-21T14:56:13.896314 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4102631/000/0001/R EE3899E78F79F0A1 0030/0030 2025-10-21T14:56:13.896335 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4102631/000/0001/R EE3899E78F79F0A1 0031/0031 2025-10-21T14:56:13.896346 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4102631/000/0001/R EE3899E78F79F0A1 0032/0032 2025-10-21T14:56:13.896357 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4102631/000/0001/R EE3899E78F79F0A1 0033/0033 2025-10-21T14:56:13.896475 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test extra issued_subhit=9 -4102631/000/0001/R EE3899E78F79F0A1 0034/0034 2025-10-21T14:56:18.646885 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test extra issued_subhit=10 -4102631/000/0001/R EE3899E78F79F0A1 0035/0035 2025-10-21T14:56:18.647036 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4102631/000/0001/R EE3899E78F79F0A1 0036/0036 2025-10-21T14:56:18.647053 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4102631/000/0001/R EE3899E78F79F0A1 0037/0037 2025-10-21T14:56:18.647065 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4102631/000/0001/R EE3899E78F79F0A1 0038/0038 2025-10-21T14:56:18.647075 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4102631/000/0001/R EE3899E78F79F0A1 0039/0039 2025-10-21T14:56:18.647087 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -./c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp(73): fatal error: in "QueryInfo/ProteinGetQueryInfo": critical check 607 == query_info->contexts[0].query_length has failed [607 != 0] -4102631/000/0001/RE EE3899E78F79F0A1 0040/0040 2025-10-21T14:56:18.648028 codethink04-arm64 UNK_CLIENT EE3899E78F79F0A1_0001SID queryinfo_unit_test request-stop 500 8.254874944 0 0 -4102631/000/0002/RB EE3899E78F79F0A1 0041/0041 2025-10-21T14:56:18.648406 codethink04-arm64 UNK_CLIENT UNK_SESSION queryinfo_unit_test request-start test_name=EmptyBlastxGetQueryInfo&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4102631/000/0002/R EE3899E78F79F0A1 0042/0042 2025-10-21T14:56:18.648561 codethink04-arm64 UNK_CLIENT UNK_SESSION queryinfo_unit_test extra ncbi_phid=EE3899E78F79F0A10000000000020002 -4102631/000/0002/R EE3899E78F79F0A1 0043/0043 2025-10-21T14:56:18.648580 codethink04-arm64 UNK_CLIENT UNK_SESSION queryinfo_unit_test extra issued_subhit=1 -4102631/000/0002/R EE3899E78F79F0A1 0044/0044 2025-10-21T14:56:26.774054 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test extra issued_subhit=2 -4102631/000/0002/R EE3899E78F79F0A1 0045/0045 2025-10-21T14:56:26.774216 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4102631/000/0002/R EE3899E78F79F0A1 0046/0046 2025-10-21T14:56:26.774233 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4102631/000/0002/R EE3899E78F79F0A1 0047/0047 2025-10-21T14:56:26.774245 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4102631/000/0002/R EE3899E78F79F0A1 0048/0048 2025-10-21T14:56:26.774257 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4102631/000/0002/R EE3899E78F79F0A1 0049/0049 2025-10-21T14:56:26.774267 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4102631/000/0002/R EE3899E78F79F0A1 0050/0050 2025-10-21T14:56:26.774402 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test extra issued_subhit=3 -4102631/000/0002/R EE3899E78F79F0A1 0051/0051 2025-10-21T14:56:39.962328 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test extra issued_subhit=4 -4102631/000/0002/R EE3899E78F79F0A1 0052/0052 2025-10-21T14:56:39.962486 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4102631/000/0002/R EE3899E78F79F0A1 0053/0053 2025-10-21T14:56:39.962503 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4102631/000/0002/R EE3899E78F79F0A1 0054/0054 2025-10-21T14:56:39.962517 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4102631/000/0002/R EE3899E78F79F0A1 0055/0055 2025-10-21T14:56:39.962528 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4102631/000/0002/R EE3899E78F79F0A1 0056/0056 2025-10-21T14:56:39.962539 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4102631/000/0002/R EE3899E78F79F0A1 0057/0057 2025-10-21T14:56:39.962677 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test extra issued_subhit=5 -4102631/000/0002/R EE3899E78F79F0A1 0058/0058 2025-10-21T14:57:00.744335 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test extra issued_subhit=6 -4102631/000/0002/R EE3899E78F79F0A1 0059/0059 2025-10-21T14:57:00.744488 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4102631/000/0002/R EE3899E78F79F0A1 0060/0060 2025-10-21T14:57:00.744505 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4102631/000/0002/R EE3899E78F79F0A1 0061/0061 2025-10-21T14:57:00.744518 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4102631/000/0002/R EE3899E78F79F0A1 0062/0062 2025-10-21T14:57:00.744528 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4102631/000/0002/R EE3899E78F79F0A1 0063/0063 2025-10-21T14:57:00.744538 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4102631/000/0002/R EE3899E78F79F0A1 0064/0064 2025-10-21T14:57:00.744671 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test extra issued_subhit=7 -4102631/000/0002/R EE3899E78F79F0A1 0065/0065 2025-10-21T14:57:30.745080 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test extra issued_subhit=8 -4102631/000/0002/R EE3899E78F79F0A1 0066/0066 2025-10-21T14:57:30.745227 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4102631/000/0002/R EE3899E78F79F0A1 0067/0067 2025-10-21T14:57:30.745244 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4102631/000/0002/R EE3899E78F79F0A1 0068/0068 2025-10-21T14:57:30.745257 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4102631/000/0002/R EE3899E78F79F0A1 0069/0069 2025-10-21T14:57:30.745269 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4102631/000/0002/R EE3899E78F79F0A1 0070/0070 2025-10-21T14:57:30.745280 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4102631/000/0002/R EE3899E78F79F0A1 0071/0071 2025-10-21T14:57:30.745423 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test extra issued_subhit=9 -4102631/000/0002/R EE3899E78F79F0A1 0072/0072 2025-10-21T14:58:00.745838 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test extra issued_subhit=10 -4102631/000/0002/R EE3899E78F79F0A1 0073/0073 2025-10-21T14:58:00.745992 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4102631/000/0002/R EE3899E78F79F0A1 0074/0074 2025-10-21T14:58:00.746008 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4102631/000/0002/R EE3899E78F79F0A1 0075/0075 2025-10-21T14:58:00.746021 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4102631/000/0002/R EE3899E78F79F0A1 0076/0076 2025-10-21T14:58:00.746031 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4102631/000/0002/R EE3899E78F79F0A1 0077/0077 2025-10-21T14:58:00.746043 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4102631/000/0002/R EE3899E78F79F0A1 0078/0078 2025-10-21T14:58:00.746498 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 -4102631/000/0002/R EE3899E78F79F0A1 0079/0079 2025-10-21T14:58:00.746512 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: GENBANK(CLoaderException::eConnectionFailed) "reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|3090)) -4102631/000/0002/R EE3899E78F79F0A1 0080/0080 2025-10-21T14:58:00.746519 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test Error: BLAST "queryinfo_unit_test.cpp", line 76: QueryInfo::EmptyBlastxGetQueryInfo_invoker() --- Uncaught exception in "EmptyBlastxGetQueryInfo"(CLoaderException::eConnectionFailed) failed to send request: NULL (in GetRecords(gi|3090)) -4102631/000/0002/RE EE3899E78F79F0A1 0083/0083 2025-10-21T14:58:00.746552 codethink04-arm64 UNK_CLIENT EE3899E78F79F1A1_0002SID queryinfo_unit_test request-stop 500 102.098150968 0 0 -unknown location(0): fatal error: in "QueryInfo/EmptyBlastxGetQueryInfo": NCBI C++ Exception: - Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 - Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|3090)) - -./c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp(76): last checkpoint: "EmptyBlastxGetQueryInfo" entry. -4102631/000/0003/RB EE3899E78F79F0A1 0084/0084 2025-10-21T14:58:00.746947 codethink04-arm64 UNK_CLIENT UNK_SESSION queryinfo_unit_test request-start test_name=BlastnGetQueryInfo&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4102631/000/0003/R EE3899E78F79F0A1 0085/0085 2025-10-21T14:58:00.747039 codethink04-arm64 UNK_CLIENT UNK_SESSION queryinfo_unit_test extra ncbi_phid=EE3899E78F79F0A10000000000030003 -4102631/000/0003/R EE3899E78F79F0A1 0086/0086 2025-10-21T14:58:00.747051 codethink04-arm64 UNK_CLIENT UNK_SESSION queryinfo_unit_test extra issued_subhit=1 -4102631/000/0003/R EE3899E78F79F0A1 0087/0087 2025-10-21T14:58:30.747504 codethink04-arm64 UNK_CLIENT EE3899E78F79F961_0003SID queryinfo_unit_test extra issued_subhit=2 -4102631/000/0003/R EE3899E78F79F0A1 0088/0088 2025-10-21T14:58:30.747661 codethink04-arm64 UNK_CLIENT EE3899E78F79F961_0003SID queryinfo_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4102631/000/0003/R EE3899E78F79F0A1 0089/0089 2025-10-21T14:58:30.747677 codethink04-arm64 UNK_CLIENT EE3899E78F79F961_0003SID queryinfo_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4102631/000/0003/R EE3899E78F79F0A1 0090/0090 2025-10-21T14:58:30.747690 codethink04-arm64 UNK_CLIENT EE3899E78F79F961_0003SID queryinfo_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4102631/000/0003/R EE3899E78F79F0A1 0091/0091 2025-10-21T14:58:30.747701 codethink04-arm64 UNK_CLIENT EE3899E78F79F961_0003SID queryinfo_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4102631/000/0003/R EE3899E78F79F0A1 0092/0092 2025-10-21T14:58:30.747710 codethink04-arm64 UNK_CLIENT EE3899E78F79F961_0003SID queryinfo_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4102631/000/0003/R EE3899E78F79F0A1 0093/0093 2025-10-21T14:58:30.747825 codethink04-arm64 UNK_CLIENT EE3899E78F79F961_0003SID queryinfo_unit_test extra issued_subhit=3 -4102631/000/0003/R EE3899E78F79F0A1 0094/0094 2025-10-21T14:59:00.748222 codethink04-arm64 UNK_CLIENT EE3899E78F79F961_0003SID queryinfo_unit_test extra issued_subhit=4 -4102631/000/0003/R EE3899E78F79F0A1 0095/0095 2025-10-21T14:59:00.748370 codethink04-arm64 UNK_CLIENT EE3899E78F79F961_0003SID queryinfo_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4102631/000/0003/R EE3899E78F79F0A1 0096/0096 2025-10-21T14:59:00.748386 codethink04-arm64 UNK_CLIENT EE3899E78F79F961_0003SID queryinfo_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4102631/000/0003/R EE3899E78F79F0A1 0097/0097 2025-10-21T14:59:00.748399 codethink04-arm64 UNK_CLIENT EE3899E78F79F961_0003SID queryinfo_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4102631/000/0003/R EE3899E78F79F0A1 0098/0098 2025-10-21T14:59:00.748411 codethink04-arm64 UNK_CLIENT EE3899E78F79F961_0003SID queryinfo_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4102631/000/0003/R EE3899E78F79F0A1 0099/0099 2025-10-21T14:59:00.748427 codethink04-arm64 UNK_CLIENT EE3899E78F79F961_0003SID queryinfo_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4102631/000/0003/R EE3899E78F79F0A1 0100/0100 2025-10-21T14:59:00.748543 codethink04-arm64 UNK_CLIENT EE3899E78F79F961_0003SID queryinfo_unit_test extra issued_subhit=5 - -Maximum execution time of 200 second(s) is exceeded - -real 200.16 -user 0.14 -sys 0.03 -Start time : 10/21/2025 14:56:10 -Stop time : 10/21/2025 14:59:30 -Load averages: 11.28 20.01 32.99 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -querydata_unit_test -====================================================================== - -4113717/000/0000/PB EE38C5358F79FD21 0001/0001 2025-10-21T14:59:30.591169 codethink04-arm64 UNK_CLIENT UNK_SESSION querydata_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/querydata_unit_test -4113717/000/0000/PB EE38C5358F79FD21 0002/0002 2025-10-21T14:59:30.595514 codethink04-arm64 UNK_CLIENT UNK_SESSION querydata_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/querydata_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 13 test cases... -4113717/000/0001/RB EE38C5358F79FD21 0003/0003 2025-10-21T14:59:30.597233 codethink04-arm64 UNK_CLIENT UNK_SESSION querydata_unit_test request-start test_name=ObjMgr_QueryFactory_LocalData_GetSumOfSequenceLengths&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4113717/000/0001/R EE38C5358F79FD21 0004/0004 2025-10-21T14:59:30.602309 codethink04-arm64 UNK_CLIENT UNK_SESSION querydata_unit_test extra ncbi_phid=EE38C5358F79FD210000000000010001 -4113717/000/0001/R EE38C5358F79FD21 0005/0005 2025-10-21T14:59:30.602345 codethink04-arm64 UNK_CLIENT UNK_SESSION querydata_unit_test extra issued_subhit=1 -4113717/000/0001/R EE38C5358F79FD21 0006/0006 2025-10-21T14:59:30.602800 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test extra issued_subhit=2 -4113717/000/0001/R EE38C5358F79FD21 0007/0007 2025-10-21T14:59:30.602940 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4113717/000/0001/R EE38C5358F79FD21 0008/0008 2025-10-21T14:59:30.602969 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4113717/000/0001/R EE38C5358F79FD21 0009/0009 2025-10-21T14:59:30.602981 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4113717/000/0001/R EE38C5358F79FD21 0010/0010 2025-10-21T14:59:30.602992 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4113717/000/0001/R EE38C5358F79FD21 0011/0011 2025-10-21T14:59:30.603002 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4113717/000/0001/R EE38C5358F79FD21 0012/0012 2025-10-21T14:59:30.603231 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test extra issued_subhit=3 -4113717/000/0001/R EE38C5358F79FD21 0013/0013 2025-10-21T14:59:30.603457 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test extra issued_subhit=4 -4113717/000/0001/R EE38C5358F79FD21 0014/0014 2025-10-21T14:59:30.603563 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4113717/000/0001/R EE38C5358F79FD21 0015/0015 2025-10-21T14:59:30.603577 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4113717/000/0001/R EE38C5358F79FD21 0016/0016 2025-10-21T14:59:30.603596 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4113717/000/0001/R EE38C5358F79FD21 0017/0017 2025-10-21T14:59:30.603606 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4113717/000/0001/R EE38C5358F79FD21 0018/0018 2025-10-21T14:59:30.603615 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4113717/000/0001/R EE38C5358F79FD21 0019/0019 2025-10-21T14:59:30.603698 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test extra issued_subhit=5 -4113717/000/0001/R EE38C5358F79FD21 0020/0020 2025-10-21T14:59:31.604105 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test extra issued_subhit=6 -4113717/000/0001/R EE38C5358F79FD21 0021/0021 2025-10-21T14:59:31.604286 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4113717/000/0001/R EE38C5358F79FD21 0022/0022 2025-10-21T14:59:31.604301 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4113717/000/0001/R EE38C5358F79FD21 0023/0023 2025-10-21T14:59:31.604313 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4113717/000/0001/R EE38C5358F79FD21 0024/0024 2025-10-21T14:59:31.604324 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4113717/000/0001/R EE38C5358F79FD21 0025/0025 2025-10-21T14:59:31.604334 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4113717/000/0001/R EE38C5358F79FD21 0026/0026 2025-10-21T14:59:31.604464 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test extra issued_subhit=7 -4113717/000/0001/R EE38C5358F79FD21 0027/0027 2025-10-21T14:59:34.104961 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test extra issued_subhit=8 -4113717/000/0001/R EE38C5358F79FD21 0028/0028 2025-10-21T14:59:34.105110 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4113717/000/0001/R EE38C5358F79FD21 0029/0029 2025-10-21T14:59:34.105124 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4113717/000/0001/R EE38C5358F79FD21 0030/0030 2025-10-21T14:59:34.105152 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4113717/000/0001/R EE38C5358F79FD21 0031/0031 2025-10-21T14:59:34.105163 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4113717/000/0001/R EE38C5358F79FD21 0032/0032 2025-10-21T14:59:34.105174 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4113717/000/0001/R EE38C5358F79FD21 0033/0033 2025-10-21T14:59:34.105302 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test extra issued_subhit=9 -4113717/000/0001/R EE38C5358F79FD21 0034/0034 2025-10-21T14:59:38.855718 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test extra issued_subhit=10 -4113717/000/0001/R EE38C5358F79FD21 0035/0035 2025-10-21T14:59:38.855878 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4113717/000/0001/R EE38C5358F79FD21 0036/0036 2025-10-21T14:59:38.855895 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4113717/000/0001/R EE38C5358F79FD21 0037/0037 2025-10-21T14:59:38.855908 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4113717/000/0001/R EE38C5358F79FD21 0038/0038 2025-10-21T14:59:38.855919 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4113717/000/0001/R EE38C5358F79FD21 0039/0039 2025-10-21T14:59:38.855929 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4113717/000/0001/R EE38C5358F79FD21 0040/0040 2025-10-21T14:59:38.857399 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 -4113717/000/0001/R EE38C5358F79FD21 0041/0041 2025-10-21T14:59:38.857426 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: GENBANK(CLoaderException::eConnectionFailed) "reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|26)) -4113717/000/0001/R EE38C5358F79FD21 0042/0042 2025-10-21T14:59:38.857435 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test Error: BLAST "querydata_unit_test.cpp", line 568: QueryData::ObjMgr_QueryFactory_LocalData_GetSumOfSequenceLengths_invoker() --- Uncaught exception in "ObjMgr_QueryFactory_LocalData_GetSumOfSequenceLengths"(CLoaderException::eConnectionFailed) failed to send request: NULL (in GetRecords(gi|26)) -4113717/000/0001/RE EE38C5358F79FD21 0045/0045 2025-10-21T14:59:38.857498 codethink04-arm64 UNK_CLIENT EE38C5358F79FD21_0001SID querydata_unit_test request-stop 500 8.260278940 0 0 -unknown location(0): fatal error: in "QueryData/ObjMgr_QueryFactory_LocalData_GetSumOfSequenceLengths": NCBI C++ Exception: - Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 - Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|26)) - -./c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp(568): last checkpoint: "ObjMgr_QueryFactory_LocalData_GetSumOfSequenceLengths" entry. -4113717/000/0002/RB EE38C5358F79FD21 0046/0046 2025-10-21T14:59:38.857912 codethink04-arm64 UNK_CLIENT UNK_SESSION querydata_unit_test request-start test_name=ObjMgr_QueryFactory_LocalDataFromTSeqLocVector_Protein&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4113717/000/0002/R EE38C5358F79FD21 0047/0047 2025-10-21T14:59:38.857997 codethink04-arm64 UNK_CLIENT UNK_SESSION querydata_unit_test extra ncbi_phid=EE38C5358F79FD210000000000020002 -4113717/000/0002/R EE38C5358F79FD21 0048/0048 2025-10-21T14:59:38.858010 codethink04-arm64 UNK_CLIENT UNK_SESSION querydata_unit_test extra issued_subhit=1 -4113717/000/0002/R EE38C5358F79FD21 0049/0049 2025-10-21T14:59:46.983853 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test extra issued_subhit=2 -4113717/000/0002/R EE38C5358F79FD21 0050/0050 2025-10-21T14:59:46.984115 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4113717/000/0002/R EE38C5358F79FD21 0051/0051 2025-10-21T14:59:46.984149 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4113717/000/0002/R EE38C5358F79FD21 0052/0052 2025-10-21T14:59:46.984177 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4113717/000/0002/R EE38C5358F79FD21 0053/0053 2025-10-21T14:59:46.984201 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4113717/000/0002/R EE38C5358F79FD21 0054/0054 2025-10-21T14:59:46.984226 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4113717/000/0002/R EE38C5358F79FD21 0055/0055 2025-10-21T14:59:46.984449 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test extra issued_subhit=3 -4113717/000/0002/R EE38C5358F79FD21 0056/0056 2025-10-21T15:00:00.172375 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test extra issued_subhit=4 -4113717/000/0002/R EE38C5358F79FD21 0057/0057 2025-10-21T15:00:00.172532 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4113717/000/0002/R EE38C5358F79FD21 0058/0058 2025-10-21T15:00:00.172549 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4113717/000/0002/R EE38C5358F79FD21 0059/0059 2025-10-21T15:00:00.172562 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4113717/000/0002/R EE38C5358F79FD21 0060/0060 2025-10-21T15:00:00.172573 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4113717/000/0002/R EE38C5358F79FD21 0061/0061 2025-10-21T15:00:00.172583 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4113717/000/0002/R EE38C5358F79FD21 0062/0062 2025-10-21T15:00:00.172705 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test extra issued_subhit=5 -4113717/000/0002/R EE38C5358F79FD21 0063/0063 2025-10-21T15:00:20.954736 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test extra issued_subhit=6 -4113717/000/0002/R EE38C5358F79FD21 0064/0064 2025-10-21T15:00:20.954983 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4113717/000/0002/R EE38C5358F79FD21 0065/0065 2025-10-21T15:00:20.955017 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4113717/000/0002/R EE38C5358F79FD21 0066/0066 2025-10-21T15:00:20.955046 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4113717/000/0002/R EE38C5358F79FD21 0067/0067 2025-10-21T15:00:20.955071 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4113717/000/0002/R EE38C5358F79FD21 0068/0068 2025-10-21T15:00:20.955096 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4113717/000/0002/R EE38C5358F79FD21 0069/0069 2025-10-21T15:00:20.955383 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test extra issued_subhit=7 -4113717/000/0002/R EE38C5358F79FD21 0070/0070 2025-10-21T15:00:50.955822 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test extra issued_subhit=8 -4113717/000/0002/R EE38C5358F79FD21 0071/0071 2025-10-21T15:00:50.955977 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4113717/000/0002/R EE38C5358F79FD21 0072/0072 2025-10-21T15:00:50.955992 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4113717/000/0002/R EE38C5358F79FD21 0073/0073 2025-10-21T15:00:50.956004 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4113717/000/0002/R EE38C5358F79FD21 0074/0074 2025-10-21T15:00:50.956015 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4113717/000/0002/R EE38C5358F79FD21 0075/0075 2025-10-21T15:00:50.956025 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4113717/000/0002/R EE38C5358F79FD21 0076/0076 2025-10-21T15:00:50.956145 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test extra issued_subhit=9 -4113717/000/0002/R EE38C5358F79FD21 0077/0077 2025-10-21T15:01:20.956575 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test extra issued_subhit=10 -4113717/000/0002/R EE38C5358F79FD21 0078/0078 2025-10-21T15:01:20.956727 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4113717/000/0002/R EE38C5358F79FD21 0079/0079 2025-10-21T15:01:20.956743 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4113717/000/0002/R EE38C5358F79FD21 0080/0080 2025-10-21T15:01:20.956755 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4113717/000/0002/R EE38C5358F79FD21 0081/0081 2025-10-21T15:01:20.956765 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4113717/000/0002/R EE38C5358F79FD21 0082/0082 2025-10-21T15:01:20.956776 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4113717/000/0002/R EE38C5358F79FD21 0083/0083 2025-10-21T15:01:20.956941 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test extra issued_subhit=11 -4113717/000/0002/R EE38C5358F79FD21 0084/0084 2025-10-21T15:01:50.957363 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test extra issued_subhit=12 -4113717/000/0002/R EE38C5358F79FD21 0085/0085 2025-10-21T15:01:50.957516 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4113717/000/0002/R EE38C5358F79FD21 0086/0086 2025-10-21T15:01:50.957531 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4113717/000/0002/R EE38C5358F79FD21 0087/0087 2025-10-21T15:01:50.957543 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4113717/000/0002/R EE38C5358F79FD21 0088/0088 2025-10-21T15:01:50.957554 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4113717/000/0002/R EE38C5358F79FD21 0089/0089 2025-10-21T15:01:50.957566 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4113717/000/0002/R EE38C5358F79FD21 0090/0090 2025-10-21T15:01:50.957683 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test extra issued_subhit=13 -4113717/000/0002/R EE38C5358F79FD21 0091/0091 2025-10-21T15:02:20.958099 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test extra issued_subhit=14 -4113717/000/0002/R EE38C5358F79FD21 0092/0092 2025-10-21T15:02:20.958274 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4113717/000/0002/R EE38C5358F79FD21 0093/0093 2025-10-21T15:02:20.958292 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4113717/000/0002/R EE38C5358F79FD21 0094/0094 2025-10-21T15:02:20.958305 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4113717/000/0002/R EE38C5358F79FD21 0095/0095 2025-10-21T15:02:20.958318 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4113717/000/0002/R EE38C5358F79FD21 0096/0096 2025-10-21T15:02:20.958330 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4113717/000/0002/R EE38C5358F79FD21 0097/0097 2025-10-21T15:02:20.958454 codethink04-arm64 UNK_CLIENT EE38C5358F79FE21_0002SID querydata_unit_test extra issued_subhit=15 - -Maximum execution time of 200 second(s) is exceeded - -real 200.17 -user 0.16 -sys 0.02 -Start time : 10/21/2025 14:59:30 -Stop time : 10/21/2025 15:02:50 -Load averages: 11.91 16.00 28.87 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -blastsetup_unit_test -====================================================================== - -4141251/000/0000/PB EE3830C38F7A09B1 0001/0001 2025-10-21T15:02:51.030967 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/blastsetup_unit_test -4141251/000/0000/PB EE3830C38F7A09B1 0002/0002 2025-10-21T15:02:51.031166 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/blastsetup_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 58 test cases... -4141251/000/0001/RB EE3830C38F7A09B1 0003/0003 2025-10-21T15:02:51.039734 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=NumberOfContextsBlastp&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0001/RE EE3830C38F7A09B1 0004/0004 2025-10-21T15:02:51.041132 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.001400947 0 0 -4141251/000/0002/RB EE3830C38F7A09B1 0005/0005 2025-10-21T15:02:51.041510 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=NumberOfContextsBlastn&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0002/RE EE3830C38F7A09B1 0006/0006 2025-10-21T15:02:51.041534 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000029087 0 0 -4141251/000/0003/RB EE3830C38F7A09B1 0007/0007 2025-10-21T15:02:51.041957 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=NumberOfContextsBlastx&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0003/RE EE3830C38F7A09B1 0008/0008 2025-10-21T15:02:51.041983 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000032186 0 0 -4141251/000/0004/RB EE3830C38F7A09B1 0009/0009 2025-10-21T15:02:51.042247 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=NumberOfContextsTblastx&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0004/RE EE3830C38F7A09B1 0010/0010 2025-10-21T15:02:51.042266 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000024080 0 0 -4141251/000/0005/RB EE3830C38F7A09B1 0011/0011 2025-10-21T15:02:51.042457 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=NumberOfContextsTblastn&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0005/RE EE3830C38F7A09B1 0012/0012 2025-10-21T15:02:51.042472 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000015974 0 0 -4141251/000/0006/RB EE3830C38F7A09B1 0013/0013 2025-10-21T15:02:51.042894 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=NumberOfContextsRPSBlast&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0006/RE EE3830C38F7A09B1 0014/0014 2025-10-21T15:02:51.042916 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000028848 0 0 -4141251/000/0007/RB EE3830C38F7A09B1 0015/0015 2025-10-21T15:02:51.043145 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=NumberOfContextsRPSTblastn&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0007/RE EE3830C38F7A09B1 0016/0016 2025-10-21T15:02:51.043162 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000019073 0 0 -4141251/000/0008/RB EE3830C38F7A09B1 0017/0017 2025-10-21T15:02:51.043615 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=NumberOfContextsThrow&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0008/RE EE3830C38F7A09B1 0018/0018 2025-10-21T15:02:51.044599 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000975847 0 0 -4141251/000/0009/RB EE3830C38F7A09B1 0019/0019 2025-10-21T15:02:51.044962 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=QueryIsTranslated&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0009/RE EE3830C38F7A09B1 0020/0020 2025-10-21T15:02:51.045409 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000443935 0 0 -4141251/000/0010/RB EE3830C38F7A09B1 0021/0021 2025-10-21T15:02:51.045696 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=QueryIsPlainNucleotide&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0010/RE EE3830C38F7A09B1 0022/0022 2025-10-21T15:02:51.045944 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000248193 0 0 -4141251/000/0011/RB EE3830C38F7A09B1 0023/0023 2025-10-21T15:02:51.046217 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=SubjectIsProtein&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0011/RE EE3830C38F7A09B1 0024/0024 2025-10-21T15:02:51.046485 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000267982 0 0 -4141251/000/0012/RB EE3830C38F7A09B1 0025/0025 2025-10-21T15:02:51.046728 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=SubjectIsNucleotide&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0012/RE EE3830C38F7A09B1 0026/0026 2025-10-21T15:02:51.046752 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000027179 0 0 -4141251/000/0013/RB EE3830C38F7A09B1 0027/0027 2025-10-21T15:02:51.047159 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=SubjectIsPlainNucleotide&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0013/RE EE3830C38F7A09B1 0028/0028 2025-10-21T15:02:51.047184 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000032186 0 0 -4141251/000/0014/RB EE3830C38F7A09B1 0029/0029 2025-10-21T15:02:51.047431 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=BlastNumber2Program_CORE&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0014/RE EE3830C38F7A09B1 0030/0030 2025-10-21T15:02:51.047458 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000030994 0 0 -4141251/000/0015/RB EE3830C38F7A09B1 0031/0031 2025-10-21T15:02:51.047645 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=String2Enum_Blastp&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0015/RE EE3830C38F7A09B1 0032/0032 2025-10-21T15:02:51.047888 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000240802 0 0 -4141251/000/0016/RB EE3830C38F7A09B1 0033/0033 2025-10-21T15:02:51.048134 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=String2Enum_Blastn&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0016/RE EE3830C38F7A09B1 0034/0034 2025-10-21T15:02:51.048152 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000022172 0 0 -4141251/000/0017/RB EE3830C38F7A09B1 0035/0035 2025-10-21T15:02:51.048338 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=String2Enum_Blastx&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0017/RE EE3830C38F7A09B1 0036/0036 2025-10-21T15:02:51.048353 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000018119 0 0 -4141251/000/0018/RB EE3830C38F7A09B1 0037/0037 2025-10-21T15:02:51.048799 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=String2Enum_Tblastx&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0018/RE EE3830C38F7A09B1 0038/0038 2025-10-21T15:02:51.048824 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000030040 0 0 -4141251/000/0019/RB EE3830C38F7A09B1 0039/0039 2025-10-21T15:02:51.049054 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=String2Enum_Tblastn&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0019/RE EE3830C38F7A09B1 0040/0040 2025-10-21T15:02:51.049069 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000019073 0 0 -4141251/000/0020/RB EE3830C38F7A09B1 0041/0041 2025-10-21T15:02:51.049269 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=String2Enum_Megablast&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0020/RE EE3830C38F7A09B1 0042/0042 2025-10-21T15:02:51.049285 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000016927 0 0 -4141251/000/0021/RB EE3830C38F7A09B1 0043/0043 2025-10-21T15:02:51.049468 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=String2Enum_DiscoMegablast&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0021/RE EE3830C38F7A09B1 0044/0044 2025-10-21T15:02:51.049485 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000019073 0 0 -4141251/000/0022/RB EE3830C38F7A09B1 0045/0045 2025-10-21T15:02:51.049664 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=String2Enum_PSIBlast&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0022/RE EE3830C38F7A09B1 0046/0046 2025-10-21T15:02:51.049678 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000015020 0 0 -4141251/000/0023/RB EE3830C38F7A09B1 0047/0047 2025-10-21T15:02:51.049866 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=String2Enum_RPSBlast&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0023/RE EE3830C38F7A09B1 0048/0048 2025-10-21T15:02:51.049881 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000015974 0 0 -4141251/000/0024/RB EE3830C38F7A09B1 0049/0049 2025-10-21T15:02:51.050060 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=String2Enum_RPSTblastn&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0024/RE EE3830C38F7A09B1 0050/0050 2025-10-21T15:02:51.050075 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000016927 0 0 -4141251/000/0025/RB EE3830C38F7A09B1 0051/0051 2025-10-21T15:02:51.050294 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=String2Enum_Throw1&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0025/RE EE3830C38F7A09B1 0052/0052 2025-10-21T15:02:51.050645 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000349044 0 0 -4141251/000/0026/RB EE3830C38F7A09B1 0053/0053 2025-10-21T15:02:51.050891 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=String2Enum_PSITblastn&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0026/RE EE3830C38F7A09B1 0054/0054 2025-10-21T15:02:51.050910 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000022888 0 0 -4141251/000/0027/RB EE3830C38F7A09B1 0055/0055 2025-10-21T15:02:51.051348 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=FindMatrixPathNoNcbiRcFile&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0027/RE EE3830C38F7A09B1 0056/0056 2025-10-21T15:02:51.052040 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000692129 0 0 -4141251/000/0028/RB EE3830C38F7A09B1 0057/0057 2025-10-21T15:02:51.052410 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=FindMatrixPathTestBLASTMAT&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0028/RE EE3830C38F7A09B1 0058/0058 2025-10-21T15:02:51.052456 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000051975 0 0 -4141251/000/0029/RB EE3830C38F7A09B1 0059/0059 2025-10-21T15:02:51.052665 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=FindMatrixPathFailure&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0029/RE EE3830C38F7A09B1 0060/0060 2025-10-21T15:02:51.052699 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000035047 0 0 -4141251/000/0030/RB EE3830C38F7A09B1 0061/0061 2025-10-21T15:02:51.052905 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=FindMatrixPathWithNull&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0030/RE EE3830C38F7A09B1 0062/0062 2025-10-21T15:02:51.052919 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000015020 0 0 -4141251/000/0031/RB EE3830C38F7A09B1 0063/0063 2025-10-21T15:02:51.053098 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=Context2Frame_ProteinQuery&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0031/RE EE3830C38F7A09B1 0064/0064 2025-10-21T15:02:51.053126 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000027894 0 0 -4141251/000/0032/RB EE3830C38F7A09B1 0065/0065 2025-10-21T15:02:51.053304 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=Context2Frame_NucleotideQuery&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0032/RE EE3830C38F7A09B1 0066/0066 2025-10-21T15:02:51.053319 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000017166 0 0 -4141251/000/0033/RB EE3830C38F7A09B1 0067/0067 2025-10-21T15:02:51.053509 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=Context2Frame_TranslatedQuery&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0033/RE EE3830C38F7A09B1 0068/0068 2025-10-21T15:02:51.053530 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000022172 0 0 -4141251/000/0034/RB EE3830C38F7A09B1 0069/0069 2025-10-21T15:02:51.053708 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=Context2Frame_Error&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0034/RE EE3830C38F7A09B1 0070/0070 2025-10-21T15:02:51.053720 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-stop 200 0.000014066 0 0 -4141251/000/0035/RB EE3830C38F7A09B1 0071/0071 2025-10-21T15:02:51.054197 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=SetupSubjectsProt&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0035/R EE3830C38F7A09B1 0072/0072 2025-10-21T15:02:51.054435 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test extra ncbi_phid=EE3830C38F7A09B10000000000230001 -4141251/000/0035/R EE3830C38F7A09B1 0073/0073 2025-10-21T15:02:51.054461 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test extra issued_subhit=1 -4141251/000/0035/R EE3830C38F7A09B1 0074/0074 2025-10-21T15:02:51.054886 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=2 -4141251/000/0035/R EE3830C38F7A09B1 0075/0075 2025-10-21T15:02:51.055027 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4141251/000/0035/R EE3830C38F7A09B1 0076/0076 2025-10-21T15:02:51.055055 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0077/0077 2025-10-21T15:02:51.055068 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4141251/000/0035/R EE3830C38F7A09B1 0078/0078 2025-10-21T15:02:51.055078 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4141251/000/0035/R EE3830C38F7A09B1 0079/0079 2025-10-21T15:02:51.055088 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0080/0080 2025-10-21T15:02:51.055260 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=3 -4141251/000/0035/R EE3830C38F7A09B1 0081/0081 2025-10-21T15:02:51.055463 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=4 -4141251/000/0035/R EE3830C38F7A09B1 0082/0082 2025-10-21T15:02:51.055558 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4141251/000/0035/R EE3830C38F7A09B1 0083/0083 2025-10-21T15:02:51.055570 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0084/0084 2025-10-21T15:02:51.055579 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4141251/000/0035/R EE3830C38F7A09B1 0085/0085 2025-10-21T15:02:51.055587 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4141251/000/0035/R EE3830C38F7A09B1 0086/0086 2025-10-21T15:02:51.055596 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0087/0087 2025-10-21T15:02:51.055667 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=5 -4141251/000/0035/R EE3830C38F7A09B1 0088/0088 2025-10-21T15:02:52.056059 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=6 -4141251/000/0035/R EE3830C38F7A09B1 0089/0089 2025-10-21T15:02:52.056213 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4141251/000/0035/R EE3830C38F7A09B1 0090/0090 2025-10-21T15:02:52.056228 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0091/0091 2025-10-21T15:02:52.056239 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4141251/000/0035/R EE3830C38F7A09B1 0092/0092 2025-10-21T15:02:52.056249 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4141251/000/0035/R EE3830C38F7A09B1 0093/0093 2025-10-21T15:02:52.056259 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0094/0094 2025-10-21T15:02:52.056382 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=7 -4141251/000/0035/R EE3830C38F7A09B1 0095/0095 2025-10-21T15:02:54.557110 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=8 -4141251/000/0035/R EE3830C38F7A09B1 0096/0096 2025-10-21T15:02:54.557356 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4141251/000/0035/R EE3830C38F7A09B1 0097/0097 2025-10-21T15:02:54.557388 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0098/0098 2025-10-21T15:02:54.557415 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4141251/000/0035/R EE3830C38F7A09B1 0099/0099 2025-10-21T15:02:54.557439 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4141251/000/0035/R EE3830C38F7A09B1 0100/0100 2025-10-21T15:02:54.557462 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0101/0101 2025-10-21T15:02:54.557686 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=9 -4141251/000/0035/R EE3830C38F7A09B1 0102/0102 2025-10-21T15:02:59.308095 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=10 -4141251/000/0035/R EE3830C38F7A09B1 0103/0103 2025-10-21T15:02:59.308245 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4141251/000/0035/R EE3830C38F7A09B1 0104/0104 2025-10-21T15:02:59.308260 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0105/0105 2025-10-21T15:02:59.308271 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4141251/000/0035/R EE3830C38F7A09B1 0106/0106 2025-10-21T15:02:59.308281 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4141251/000/0035/R EE3830C38F7A09B1 0107/0107 2025-10-21T15:02:59.308291 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0108/0108 2025-10-21T15:02:59.309859 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=11 -4141251/000/0035/R EE3830C38F7A09B1 0109/0109 2025-10-21T15:03:07.435337 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=12 -4141251/000/0035/R EE3830C38F7A09B1 0110/0110 2025-10-21T15:03:07.435499 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4141251/000/0035/R EE3830C38F7A09B1 0111/0111 2025-10-21T15:03:07.435515 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0112/0112 2025-10-21T15:03:07.435527 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4141251/000/0035/R EE3830C38F7A09B1 0113/0113 2025-10-21T15:03:07.435538 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4141251/000/0035/R EE3830C38F7A09B1 0114/0114 2025-10-21T15:03:07.435548 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0115/0115 2025-10-21T15:03:07.435679 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=13 -4141251/000/0035/R EE3830C38F7A09B1 0116/0116 2025-10-21T15:03:20.623552 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=14 -4141251/000/0035/R EE3830C38F7A09B1 0117/0117 2025-10-21T15:03:20.623726 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4141251/000/0035/R EE3830C38F7A09B1 0118/0118 2025-10-21T15:03:20.623743 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0119/0119 2025-10-21T15:03:20.623755 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4141251/000/0035/R EE3830C38F7A09B1 0120/0120 2025-10-21T15:03:20.623765 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4141251/000/0035/R EE3830C38F7A09B1 0121/0121 2025-10-21T15:03:20.623775 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0122/0122 2025-10-21T15:03:20.623912 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=15 -4141251/000/0035/R EE3830C38F7A09B1 0123/0123 2025-10-21T15:03:41.405587 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=16 -4141251/000/0035/R EE3830C38F7A09B1 0124/0124 2025-10-21T15:03:41.405746 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4141251/000/0035/R EE3830C38F7A09B1 0125/0125 2025-10-21T15:03:41.405762 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0126/0126 2025-10-21T15:03:41.405773 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4141251/000/0035/R EE3830C38F7A09B1 0127/0127 2025-10-21T15:03:41.405783 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4141251/000/0035/R EE3830C38F7A09B1 0128/0128 2025-10-21T15:03:41.405794 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0129/0129 2025-10-21T15:03:41.405933 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=17 -4141251/000/0035/R EE3830C38F7A09B1 0130/0130 2025-10-21T15:04:11.406707 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=18 -4141251/000/0035/R EE3830C38F7A09B1 0131/0131 2025-10-21T15:04:11.406989 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4141251/000/0035/R EE3830C38F7A09B1 0132/0132 2025-10-21T15:04:11.407024 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0133/0133 2025-10-21T15:04:11.407051 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4141251/000/0035/R EE3830C38F7A09B1 0134/0134 2025-10-21T15:04:11.407075 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4141251/000/0035/R EE3830C38F7A09B1 0135/0135 2025-10-21T15:04:11.407097 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0136/0136 2025-10-21T15:04:11.407400 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=19 -4141251/000/0035/R EE3830C38F7A09B1 0137/0137 2025-10-21T15:04:41.408205 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test extra issued_subhit=20 -4141251/000/0035/R EE3830C38F7A09B1 0138/0138 2025-10-21T15:04:41.408479 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4141251/000/0035/R EE3830C38F7A09B1 0139/0139 2025-10-21T15:04:41.408517 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0140/0140 2025-10-21T15:04:41.408547 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4141251/000/0035/R EE3830C38F7A09B1 0141/0141 2025-10-21T15:04:41.408574 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4141251/000/0035/R EE3830C38F7A09B1 0142/0142 2025-10-21T15:04:41.408598 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4141251/000/0035/R EE3830C38F7A09B1 0143/0143 2025-10-21T15:04:41.410604 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 -4141251/000/0035/R EE3830C38F7A09B1 0144/0144 2025-10-21T15:04:41.410672 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: GENBANK(CLoaderException::eConnectionFailed) "reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL -4141251/000/0035/R EE3830C38F7A09B1 0145/0145 2025-10-21T15:04:41.410699 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: BLAST(CLoaderException::eConnectionFailed) "blast_setup_cxx.cpp", line 797: ncbi::blast::SetupSubjects_OMF() --- failed to send request: NULL (in GetRecords(gi|129295)) -4141251/000/0035/R EE3830C38F7A09B1 0146/0146 2025-10-21T15:04:41.410719 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test Error: BLAST "blastsetup_unit_test.cpp", line 483: BlastSetup::SetupSubjectsProt_invoker() --- Uncaught exception in "SetupSubjectsProt"(CLoaderException::eConnectionFailed) failed to send request: NULL -4141251/000/0035/RE EE3830C38F7A09B1 0150/0150 2025-10-21T15:04:41.410838 codethink04-arm64 UNK_CLIENT EE3830C38F7A09B1_0035SID blastsetup_unit_test request-stop 500 110.356637954 0 0 -unknown location(0): fatal error: in "BlastSetup/SetupSubjectsProt": NCBI C++ Exception: - Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 - Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL - Error: BLAST(CLoaderException::eConnectionFailed) "./c++/src/algo/blast/api/blast_setup_cxx.cpp", line 797: ncbi::blast::SetupSubjects_OMF() --- failed to send request: NULL (in GetRecords(gi|129295)) - -./c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp(483): last checkpoint: "SetupSubjectsProt" entry. -4141251/000/0036/RB EE3830C38F7A09B1 0151/0151 2025-10-21T15:04:41.411846 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test request-start test_name=SetupSubjectsProtRange&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4141251/000/0036/R EE3830C38F7A09B1 0152/0152 2025-10-21T15:04:41.412426 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test extra ncbi_phid=EE3830C38F7A09B10000000000240002 -4141251/000/0036/R EE3830C38F7A09B1 0153/0153 2025-10-21T15:04:41.412471 codethink04-arm64 UNK_CLIENT UNK_SESSION blastsetup_unit_test extra issued_subhit=1 -4141251/000/0036/R EE3830C38F7A09B1 0154/0154 2025-10-21T15:05:11.412876 codethink04-arm64 UNK_CLIENT EE3830C38F7A1271_0036SID blastsetup_unit_test extra issued_subhit=2 -4141251/000/0036/R EE3830C38F7A09B1 0155/0155 2025-10-21T15:05:11.413023 codethink04-arm64 UNK_CLIENT EE3830C38F7A1271_0036SID blastsetup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4141251/000/0036/R EE3830C38F7A09B1 0156/0156 2025-10-21T15:05:11.413039 codethink04-arm64 UNK_CLIENT EE3830C38F7A1271_0036SID blastsetup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4141251/000/0036/R EE3830C38F7A09B1 0157/0157 2025-10-21T15:05:11.413051 codethink04-arm64 UNK_CLIENT EE3830C38F7A1271_0036SID blastsetup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4141251/000/0036/R EE3830C38F7A09B1 0158/0158 2025-10-21T15:05:11.413061 codethink04-arm64 UNK_CLIENT EE3830C38F7A1271_0036SID blastsetup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4141251/000/0036/R EE3830C38F7A09B1 0159/0159 2025-10-21T15:05:11.413075 codethink04-arm64 UNK_CLIENT EE3830C38F7A1271_0036SID blastsetup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4141251/000/0036/R EE3830C38F7A09B1 0160/0160 2025-10-21T15:05:11.413211 codethink04-arm64 UNK_CLIENT EE3830C38F7A1271_0036SID blastsetup_unit_test extra issued_subhit=3 -4141251/000/0036/R EE3830C38F7A09B1 0161/0161 2025-10-21T15:05:41.415498 codethink04-arm64 UNK_CLIENT EE3830C38F7A1271_0036SID blastsetup_unit_test extra issued_subhit=4 -4141251/000/0036/R EE3830C38F7A09B1 0162/0162 2025-10-21T15:05:41.415643 codethink04-arm64 UNK_CLIENT EE3830C38F7A1271_0036SID blastsetup_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4141251/000/0036/R EE3830C38F7A09B1 0163/0163 2025-10-21T15:05:41.415657 codethink04-arm64 UNK_CLIENT EE3830C38F7A1271_0036SID blastsetup_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4141251/000/0036/R EE3830C38F7A09B1 0164/0164 2025-10-21T15:05:41.415669 codethink04-arm64 UNK_CLIENT EE3830C38F7A1271_0036SID blastsetup_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4141251/000/0036/R EE3830C38F7A09B1 0165/0165 2025-10-21T15:05:41.415678 codethink04-arm64 UNK_CLIENT EE3830C38F7A1271_0036SID blastsetup_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4141251/000/0036/R EE3830C38F7A09B1 0166/0166 2025-10-21T15:05:41.415687 codethink04-arm64 UNK_CLIENT EE3830C38F7A1271_0036SID blastsetup_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4141251/000/0036/R EE3830C38F7A09B1 0167/0167 2025-10-21T15:05:41.415815 codethink04-arm64 UNK_CLIENT EE3830C38F7A1271_0036SID blastsetup_unit_test extra issued_subhit=5 - -Maximum execution time of 200 second(s) is exceeded - -real 200.20 -user 0.14 -sys 0.07 -Start time : 10/21/2025 15:02:50 -Stop time : 10/21/2025 15:06:11 -Load averages: 16.42 15.23 26.00 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -blastextend_unit_test -====================================================================== - -4161682/000/0000/PB EE3880928F7A1631 0001/0001 2025-10-21T15:06:11.390808 codethink04-arm64 UNK_CLIENT UNK_SESSION blastextend_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/blastextend_unit_test -4161682/000/0000/PB EE3880928F7A1631 0002/0002 2025-10-21T15:06:11.390985 codethink04-arm64 UNK_CLIENT UNK_SESSION blastextend_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/blastextend_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 9 test cases... -4161682/000/0001/RB EE3880928F7A1631 0003/0003 2025-10-21T15:06:11.399700 codethink04-arm64 UNK_CLIENT UNK_SESSION blastextend_unit_test request-start test_name=testGapAlignment&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4161682/000/0001/R EE3880928F7A1631 0004/0004 2025-10-21T15:06:11.400598 codethink04-arm64 UNK_CLIENT UNK_SESSION blastextend_unit_test extra ncbi_phid=EE3880928F7A16310000000000010001 -4161682/000/0001/R EE3880928F7A1631 0005/0005 2025-10-21T15:06:11.400630 codethink04-arm64 UNK_CLIENT UNK_SESSION blastextend_unit_test extra issued_subhit=1 -4161682/000/0001/R EE3880928F7A1631 0006/0006 2025-10-21T15:06:11.401059 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=2 -4161682/000/0001/R EE3880928F7A1631 0007/0007 2025-10-21T15:06:11.401202 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4161682/000/0001/R EE3880928F7A1631 0008/0008 2025-10-21T15:06:11.401229 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4161682/000/0001/R EE3880928F7A1631 0009/0009 2025-10-21T15:06:11.401241 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4161682/000/0001/R EE3880928F7A1631 0010/0010 2025-10-21T15:06:11.401251 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4161682/000/0001/R EE3880928F7A1631 0011/0011 2025-10-21T15:06:11.401261 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4161682/000/0001/R EE3880928F7A1631 0012/0012 2025-10-21T15:06:11.401459 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=3 -4161682/000/0001/R EE3880928F7A1631 0013/0013 2025-10-21T15:06:11.401661 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=4 -4161682/000/0001/R EE3880928F7A1631 0014/0014 2025-10-21T15:06:11.401794 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4161682/000/0001/R EE3880928F7A1631 0015/0015 2025-10-21T15:06:11.401809 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4161682/000/0001/R EE3880928F7A1631 0016/0016 2025-10-21T15:06:11.401828 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4161682/000/0001/R EE3880928F7A1631 0017/0017 2025-10-21T15:06:11.401839 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4161682/000/0001/R EE3880928F7A1631 0018/0018 2025-10-21T15:06:11.401847 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4161682/000/0001/R EE3880928F7A1631 0019/0019 2025-10-21T15:06:11.401918 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=5 -4161682/000/0001/R EE3880928F7A1631 0020/0020 2025-10-21T15:06:12.403523 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=6 -4161682/000/0001/R EE3880928F7A1631 0021/0021 2025-10-21T15:06:12.403664 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4161682/000/0001/R EE3880928F7A1631 0022/0022 2025-10-21T15:06:12.403681 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4161682/000/0001/R EE3880928F7A1631 0023/0023 2025-10-21T15:06:12.403693 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4161682/000/0001/R EE3880928F7A1631 0024/0024 2025-10-21T15:06:12.403702 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4161682/000/0001/R EE3880928F7A1631 0025/0025 2025-10-21T15:06:12.403713 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4161682/000/0001/R EE3880928F7A1631 0026/0026 2025-10-21T15:06:12.403827 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=7 -4161682/000/0001/R EE3880928F7A1631 0027/0027 2025-10-21T15:06:14.911503 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=8 -4161682/000/0001/R EE3880928F7A1631 0028/0028 2025-10-21T15:06:14.911652 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4161682/000/0001/R EE3880928F7A1631 0029/0029 2025-10-21T15:06:14.911668 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4161682/000/0001/R EE3880928F7A1631 0030/0030 2025-10-21T15:06:14.911684 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4161682/000/0001/R EE3880928F7A1631 0031/0031 2025-10-21T15:06:14.911695 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4161682/000/0001/R EE3880928F7A1631 0032/0032 2025-10-21T15:06:14.911705 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4161682/000/0001/R EE3880928F7A1631 0033/0033 2025-10-21T15:06:14.911820 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=9 -4161682/000/0001/R EE3880928F7A1631 0034/0034 2025-10-21T15:06:19.662247 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=10 -4161682/000/0001/R EE3880928F7A1631 0035/0035 2025-10-21T15:06:19.662398 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4161682/000/0001/R EE3880928F7A1631 0036/0036 2025-10-21T15:06:19.662414 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4161682/000/0001/R EE3880928F7A1631 0037/0037 2025-10-21T15:06:19.662427 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4161682/000/0001/R EE3880928F7A1631 0038/0038 2025-10-21T15:06:19.662438 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4161682/000/0001/R EE3880928F7A1631 0039/0039 2025-10-21T15:06:19.662448 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4161682/000/0001/R EE3880928F7A1631 0040/0040 2025-10-21T15:06:19.663343 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=11 -4161682/000/0001/R EE3880928F7A1631 0041/0041 2025-10-21T15:06:27.788762 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=12 -4161682/000/0001/R EE3880928F7A1631 0042/0042 2025-10-21T15:06:27.788910 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4161682/000/0001/R EE3880928F7A1631 0043/0043 2025-10-21T15:06:27.788928 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4161682/000/0001/R EE3880928F7A1631 0044/0044 2025-10-21T15:06:27.788947 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4161682/000/0001/R EE3880928F7A1631 0045/0045 2025-10-21T15:06:27.788958 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4161682/000/0001/R EE3880928F7A1631 0046/0046 2025-10-21T15:06:27.788969 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4161682/000/0001/R EE3880928F7A1631 0047/0047 2025-10-21T15:06:27.789103 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=13 -4161682/000/0001/R EE3880928F7A1631 0048/0048 2025-10-21T15:06:40.977366 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=14 -4161682/000/0001/R EE3880928F7A1631 0049/0049 2025-10-21T15:06:40.977642 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4161682/000/0001/R EE3880928F7A1631 0050/0050 2025-10-21T15:06:40.977682 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4161682/000/0001/R EE3880928F7A1631 0051/0051 2025-10-21T15:06:40.977711 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4161682/000/0001/R EE3880928F7A1631 0052/0052 2025-10-21T15:06:40.977737 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4161682/000/0001/R EE3880928F7A1631 0053/0053 2025-10-21T15:06:40.977761 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4161682/000/0001/R EE3880928F7A1631 0054/0054 2025-10-21T15:06:40.978017 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=15 -4161682/000/0001/R EE3880928F7A1631 0055/0055 2025-10-21T15:07:01.759684 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=16 -4161682/000/0001/R EE3880928F7A1631 0056/0056 2025-10-21T15:07:01.759828 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4161682/000/0001/R EE3880928F7A1631 0057/0057 2025-10-21T15:07:01.759851 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4161682/000/0001/R EE3880928F7A1631 0058/0058 2025-10-21T15:07:01.759865 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4161682/000/0001/R EE3880928F7A1631 0059/0059 2025-10-21T15:07:01.759876 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4161682/000/0001/R EE3880928F7A1631 0060/0060 2025-10-21T15:07:01.759886 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4161682/000/0001/R EE3880928F7A1631 0061/0061 2025-10-21T15:07:01.760018 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=17 -4161682/000/0001/R EE3880928F7A1631 0062/0062 2025-10-21T15:07:31.760423 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=18 -4161682/000/0001/R EE3880928F7A1631 0063/0063 2025-10-21T15:07:31.760570 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4161682/000/0001/R EE3880928F7A1631 0064/0064 2025-10-21T15:07:31.760586 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4161682/000/0001/R EE3880928F7A1631 0065/0065 2025-10-21T15:07:31.760600 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4161682/000/0001/R EE3880928F7A1631 0066/0066 2025-10-21T15:07:31.760611 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4161682/000/0001/R EE3880928F7A1631 0067/0067 2025-10-21T15:07:31.760621 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4161682/000/0001/R EE3880928F7A1631 0068/0068 2025-10-21T15:07:31.760752 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=19 -4161682/000/0001/R EE3880928F7A1631 0069/0069 2025-10-21T15:08:01.761157 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test extra issued_subhit=20 -4161682/000/0001/R EE3880928F7A1631 0070/0070 2025-10-21T15:08:01.761307 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4161682/000/0001/R EE3880928F7A1631 0071/0071 2025-10-21T15:08:01.761330 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4161682/000/0001/R EE3880928F7A1631 0072/0072 2025-10-21T15:08:01.761342 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4161682/000/0001/R EE3880928F7A1631 0073/0073 2025-10-21T15:08:01.761352 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4161682/000/0001/R EE3880928F7A1631 0074/0074 2025-10-21T15:08:01.761363 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4161682/000/0001/R EE3880928F7A1631 0075/0075 2025-10-21T15:08:01.762918 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: BLAST(CBlastException::eInvalid) "blast_setup_cxx.cpp", line 651: ncbi::blast::SetupQueries_OMF() --- Warning: failed to send request: NULL -4161682/000/0001/R EE3880928F7A1631 0076/0076 2025-10-21T15:08:01.762946 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test Error: BLAST "blastextend_unit_test.cpp", line 276: BlastExtend::testGapAlignment_invoker() --- Uncaught exception in "testGapAlignment"(CBlastException::eInvalid) Warning: failed to send request: NULL -4161682/000/0001/RE EE3880928F7A1631 0078/0078 2025-10-21T15:08:01.763437 codethink04-arm64 UNK_CLIENT EE3880928F7A1631_0001SID blastextend_unit_test request-stop 500 110.363749027 0 0 -unknown location(0): fatal error: in "BlastExtend/testGapAlignment": NCBI C++ Exception: - Error: BLAST(CBlastException::eInvalid) "./c++/src/algo/blast/api/blast_setup_cxx.cpp", line 651: ncbi::blast::SetupQueries_OMF() --- Warning: failed to send request: NULL - -./c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp(276): last checkpoint: "testGapAlignment" entry. -4161682/000/0002/RB EE3880928F7A1631 0079/0079 2025-10-21T15:08:01.764097 codethink04-arm64 UNK_CLIENT UNK_SESSION blastextend_unit_test request-start test_name=testGreedyAlignment&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4161682/000/0002/R EE3880928F7A1631 0080/0080 2025-10-21T15:08:01.764193 codethink04-arm64 UNK_CLIENT UNK_SESSION blastextend_unit_test extra ncbi_phid=EE3880928F7A16310000000000020002 -4161682/000/0002/R EE3880928F7A1631 0081/0081 2025-10-21T15:08:01.764204 codethink04-arm64 UNK_CLIENT UNK_SESSION blastextend_unit_test extra issued_subhit=1 -4161682/000/0002/R EE3880928F7A1631 0082/0082 2025-10-21T15:08:31.764613 codethink04-arm64 UNK_CLIENT EE3880928F7A1EF1_0002SID blastextend_unit_test extra issued_subhit=2 -4161682/000/0002/R EE3880928F7A1631 0083/0083 2025-10-21T15:08:31.764760 codethink04-arm64 UNK_CLIENT EE3880928F7A1EF1_0002SID blastextend_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4161682/000/0002/R EE3880928F7A1631 0084/0084 2025-10-21T15:08:31.764777 codethink04-arm64 UNK_CLIENT EE3880928F7A1EF1_0002SID blastextend_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4161682/000/0002/R EE3880928F7A1631 0085/0085 2025-10-21T15:08:31.764799 codethink04-arm64 UNK_CLIENT EE3880928F7A1EF1_0002SID blastextend_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4161682/000/0002/R EE3880928F7A1631 0086/0086 2025-10-21T15:08:31.764810 codethink04-arm64 UNK_CLIENT EE3880928F7A1EF1_0002SID blastextend_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4161682/000/0002/R EE3880928F7A1631 0087/0087 2025-10-21T15:08:31.764821 codethink04-arm64 UNK_CLIENT EE3880928F7A1EF1_0002SID blastextend_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4161682/000/0002/R EE3880928F7A1631 0088/0088 2025-10-21T15:08:31.764938 codethink04-arm64 UNK_CLIENT EE3880928F7A1EF1_0002SID blastextend_unit_test extra issued_subhit=3 -4161682/000/0002/R EE3880928F7A1631 0089/0089 2025-10-21T15:09:01.765429 codethink04-arm64 UNK_CLIENT EE3880928F7A1EF1_0002SID blastextend_unit_test extra issued_subhit=4 -4161682/000/0002/R EE3880928F7A1631 0090/0090 2025-10-21T15:09:01.765585 codethink04-arm64 UNK_CLIENT EE3880928F7A1EF1_0002SID blastextend_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4161682/000/0002/R EE3880928F7A1631 0091/0091 2025-10-21T15:09:01.765605 codethink04-arm64 UNK_CLIENT EE3880928F7A1EF1_0002SID blastextend_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4161682/000/0002/R EE3880928F7A1631 0092/0092 2025-10-21T15:09:01.765623 codethink04-arm64 UNK_CLIENT EE3880928F7A1EF1_0002SID blastextend_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4161682/000/0002/R EE3880928F7A1631 0093/0093 2025-10-21T15:09:01.765637 codethink04-arm64 UNK_CLIENT EE3880928F7A1EF1_0002SID blastextend_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4161682/000/0002/R EE3880928F7A1631 0094/0094 2025-10-21T15:09:01.765648 codethink04-arm64 UNK_CLIENT EE3880928F7A1EF1_0002SID blastextend_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4161682/000/0002/R EE3880928F7A1631 0095/0095 2025-10-21T15:09:01.765786 codethink04-arm64 UNK_CLIENT EE3880928F7A1EF1_0002SID blastextend_unit_test extra issued_subhit=5 - -Maximum execution time of 200 second(s) is exceeded - -real 200.18 -user 0.13 -sys 0.06 -Start time : 10/21/2025 15:06:11 -Stop time : 10/21/2025 15:09:31 -Load averages: 13.42 15.36 23.99 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -pssmcreate_unit_test -====================================================================== - -4176708/000/0000/PB EE38BB448F7A22B1 0001/0001 2025-10-21T15:09:31.761429 codethink04-arm64 UNK_CLIENT UNK_SESSION pssmcreate_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/pssmcreate_unit_test -4176708/000/0000/PB EE38BB448F7A22B1 0002/0002 2025-10-21T15:09:31.761648 codethink04-arm64 UNK_CLIENT UNK_SESSION pssmcreate_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/pssmcreate_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 29 test cases... -4176708/000/0001/RB EE38BB448F7A22B1 0003/0003 2025-10-21T15:09:31.764329 codethink04-arm64 UNK_CLIENT UNK_SESSION pssmcreate_unit_test request-start test_name=testFullPssmEngineRunWithDiagnosticsRequest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4176708/000/0001/R EE38BB448F7A22B1 0004/0004 2025-10-21T15:09:31.766686 codethink04-arm64 UNK_CLIENT UNK_SESSION pssmcreate_unit_test extra ncbi_phid=EE38BB448F7A22B10000000000010001 -4176708/000/0001/R EE38BB448F7A22B1 0005/0005 2025-10-21T15:09:31.766728 codethink04-arm64 UNK_CLIENT UNK_SESSION pssmcreate_unit_test extra issued_subhit=1 -4176708/000/0001/R EE38BB448F7A22B1 0006/0006 2025-10-21T15:09:31.767295 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=2 -4176708/000/0001/R EE38BB448F7A22B1 0007/0007 2025-10-21T15:09:31.767449 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4176708/000/0001/R EE38BB448F7A22B1 0008/0008 2025-10-21T15:09:31.767479 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0009/0009 2025-10-21T15:09:31.767497 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4176708/000/0001/R EE38BB448F7A22B1 0010/0010 2025-10-21T15:09:31.767511 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4176708/000/0001/R EE38BB448F7A22B1 0011/0011 2025-10-21T15:09:31.767524 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0012/0012 2025-10-21T15:09:31.767727 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=3 -4176708/000/0001/R EE38BB448F7A22B1 0013/0013 2025-10-21T15:09:31.767973 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=4 -4176708/000/0001/R EE38BB448F7A22B1 0014/0014 2025-10-21T15:09:31.768074 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4176708/000/0001/R EE38BB448F7A22B1 0015/0015 2025-10-21T15:09:31.768089 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0016/0016 2025-10-21T15:09:31.768109 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4176708/000/0001/R EE38BB448F7A22B1 0017/0017 2025-10-21T15:09:31.768121 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4176708/000/0001/R EE38BB448F7A22B1 0018/0018 2025-10-21T15:09:31.768131 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0019/0019 2025-10-21T15:09:31.768218 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=5 -4176708/000/0001/R EE38BB448F7A22B1 0020/0020 2025-10-21T15:09:32.768988 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=6 -4176708/000/0001/R EE38BB448F7A22B1 0021/0021 2025-10-21T15:09:32.769226 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4176708/000/0001/R EE38BB448F7A22B1 0022/0022 2025-10-21T15:09:32.769259 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0023/0023 2025-10-21T15:09:32.769286 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4176708/000/0001/R EE38BB448F7A22B1 0024/0024 2025-10-21T15:09:32.769312 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4176708/000/0001/R EE38BB448F7A22B1 0025/0025 2025-10-21T15:09:32.769335 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0026/0026 2025-10-21T15:09:32.769553 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=7 -4176708/000/0001/R EE38BB448F7A22B1 0027/0027 2025-10-21T15:09:35.270452 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=8 -4176708/000/0001/R EE38BB448F7A22B1 0028/0028 2025-10-21T15:09:35.270685 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4176708/000/0001/R EE38BB448F7A22B1 0029/0029 2025-10-21T15:09:35.270717 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0030/0030 2025-10-21T15:09:35.270756 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4176708/000/0001/R EE38BB448F7A22B1 0031/0031 2025-10-21T15:09:35.270783 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4176708/000/0001/R EE38BB448F7A22B1 0032/0032 2025-10-21T15:09:35.270806 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0033/0033 2025-10-21T15:09:35.271025 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=9 -4176708/000/0001/R EE38BB448F7A22B1 0034/0034 2025-10-21T15:09:40.021813 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=10 -4176708/000/0001/R EE38BB448F7A22B1 0035/0035 2025-10-21T15:09:40.022058 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4176708/000/0001/R EE38BB448F7A22B1 0036/0036 2025-10-21T15:09:40.022092 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0037/0037 2025-10-21T15:09:40.022120 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4176708/000/0001/R EE38BB448F7A22B1 0038/0038 2025-10-21T15:09:40.022147 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4176708/000/0001/R EE38BB448F7A22B1 0039/0039 2025-10-21T15:09:40.022169 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0040/0040 2025-10-21T15:09:40.022585 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=11 -4176708/000/0001/R EE38BB448F7A22B1 0041/0041 2025-10-21T15:09:48.148216 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=12 -4176708/000/0001/R EE38BB448F7A22B1 0042/0042 2025-10-21T15:09:48.148447 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4176708/000/0001/R EE38BB448F7A22B1 0043/0043 2025-10-21T15:09:48.148473 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0044/0044 2025-10-21T15:09:48.148502 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4176708/000/0001/R EE38BB448F7A22B1 0045/0045 2025-10-21T15:09:48.148524 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4176708/000/0001/R EE38BB448F7A22B1 0046/0046 2025-10-21T15:09:48.148542 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0047/0047 2025-10-21T15:09:48.148749 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=13 -4176708/000/0001/R EE38BB448F7A22B1 0048/0048 2025-10-21T15:10:01.336996 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=14 -4176708/000/0001/R EE38BB448F7A22B1 0049/0049 2025-10-21T15:10:01.337238 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4176708/000/0001/R EE38BB448F7A22B1 0050/0050 2025-10-21T15:10:01.337271 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0051/0051 2025-10-21T15:10:01.337299 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4176708/000/0001/R EE38BB448F7A22B1 0052/0052 2025-10-21T15:10:01.337326 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4176708/000/0001/R EE38BB448F7A22B1 0053/0053 2025-10-21T15:10:01.337350 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0054/0054 2025-10-21T15:10:01.337583 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=15 -4176708/000/0001/R EE38BB448F7A22B1 0055/0055 2025-10-21T15:10:22.119636 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=16 -4176708/000/0001/R EE38BB448F7A22B1 0056/0056 2025-10-21T15:10:22.119890 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4176708/000/0001/R EE38BB448F7A22B1 0057/0057 2025-10-21T15:10:22.119925 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0058/0058 2025-10-21T15:10:22.119964 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4176708/000/0001/R EE38BB448F7A22B1 0059/0059 2025-10-21T15:10:22.119991 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4176708/000/0001/R EE38BB448F7A22B1 0060/0060 2025-10-21T15:10:22.120015 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0061/0061 2025-10-21T15:10:22.120262 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=17 -4176708/000/0001/R EE38BB448F7A22B1 0062/0062 2025-10-21T15:10:52.120999 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=18 -4176708/000/0001/R EE38BB448F7A22B1 0063/0063 2025-10-21T15:10:52.121242 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4176708/000/0001/R EE38BB448F7A22B1 0064/0064 2025-10-21T15:10:52.121279 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0065/0065 2025-10-21T15:10:52.121308 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4176708/000/0001/R EE38BB448F7A22B1 0066/0066 2025-10-21T15:10:52.121332 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4176708/000/0001/R EE38BB448F7A22B1 0067/0067 2025-10-21T15:10:52.121355 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0068/0068 2025-10-21T15:10:52.121595 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=19 -4176708/000/0001/R EE38BB448F7A22B1 0069/0069 2025-10-21T15:11:22.121996 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test extra issued_subhit=20 -4176708/000/0001/R EE38BB448F7A22B1 0070/0070 2025-10-21T15:11:22.122140 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4176708/000/0001/R EE38BB448F7A22B1 0071/0071 2025-10-21T15:11:22.122159 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0072/0072 2025-10-21T15:11:22.122173 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4176708/000/0001/R EE38BB448F7A22B1 0073/0073 2025-10-21T15:11:22.122183 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4176708/000/0001/R EE38BB448F7A22B1 0074/0074 2025-10-21T15:11:22.122193 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4176708/000/0001/R EE38BB448F7A22B1 0075/0075 2025-10-21T15:11:22.123073 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 -4176708/000/0001/R EE38BB448F7A22B1 0076/0076 2025-10-21T15:11:22.123089 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: GENBANK(CLoaderException::eConnectionFailed) "reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|129295)) -4176708/000/0001/R EE38BB448F7A22B1 0077/0077 2025-10-21T15:11:22.123096 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test Error: BLAST "pssmcreate_unit_test.cpp", line 571: pssmcreate::testFullPssmEngineRunWithDiagnosticsRequest_invoker() --- Uncaught exception in "testFullPssmEngineRunWithDiagnosticsRequest"(CLoaderException::eConnectionFailed) failed to send request: NULL (in GetRecords(gi|129295)) -4176708/000/0001/RE EE38BB448F7A22B1 0080/0080 2025-10-21T15:11:22.123439 codethink04-arm64 UNK_CLIENT EE38BB448F7A22B1_0001SID pssmcreate_unit_test request-stop 500 110.359122991 0 0 -unknown location(0): fatal error: in "pssmcreate/testFullPssmEngineRunWithDiagnosticsRequest": NCBI C++ Exception: - Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 - Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|129295)) - -./c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp(571): last checkpoint: "testFullPssmEngineRunWithDiagnosticsRequest" entry. -4176708/000/0002/RB EE38BB448F7A22B1 0081/0081 2025-10-21T15:11:22.124089 codethink04-arm64 UNK_CLIENT UNK_SESSION pssmcreate_unit_test request-start test_name=testSeqAlignToPsiBlastMultipleSequenceAlignment&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -4176708/000/0002/R EE38BB448F7A22B1 0082/0082 2025-10-21T15:11:22.124404 codethink04-arm64 UNK_CLIENT UNK_SESSION pssmcreate_unit_test extra ncbi_phid=EE38BB448F7A22B10000000000020002 -4176708/000/0002/R EE38BB448F7A22B1 0083/0083 2025-10-21T15:11:22.124420 codethink04-arm64 UNK_CLIENT UNK_SESSION pssmcreate_unit_test extra issued_subhit=1 -4176708/000/0002/R EE38BB448F7A22B1 0084/0084 2025-10-21T15:11:52.124978 codethink04-arm64 UNK_CLIENT EE38BB448F7A2B81_0002SID pssmcreate_unit_test extra issued_subhit=2 -4176708/000/0002/R EE38BB448F7A22B1 0085/0085 2025-10-21T15:11:52.125174 codethink04-arm64 UNK_CLIENT EE38BB448F7A2B81_0002SID pssmcreate_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4176708/000/0002/R EE38BB448F7A22B1 0086/0086 2025-10-21T15:11:52.125200 codethink04-arm64 UNK_CLIENT EE38BB448F7A2B81_0002SID pssmcreate_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4176708/000/0002/R EE38BB448F7A22B1 0087/0087 2025-10-21T15:11:52.125222 codethink04-arm64 UNK_CLIENT EE38BB448F7A2B81_0002SID pssmcreate_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4176708/000/0002/R EE38BB448F7A22B1 0088/0088 2025-10-21T15:11:52.125241 codethink04-arm64 UNK_CLIENT EE38BB448F7A2B81_0002SID pssmcreate_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4176708/000/0002/R EE38BB448F7A22B1 0089/0089 2025-10-21T15:11:52.125258 codethink04-arm64 UNK_CLIENT EE38BB448F7A2B81_0002SID pssmcreate_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4176708/000/0002/R EE38BB448F7A22B1 0090/0090 2025-10-21T15:11:52.125424 codethink04-arm64 UNK_CLIENT EE38BB448F7A2B81_0002SID pssmcreate_unit_test extra issued_subhit=3 -4176708/000/0002/R EE38BB448F7A22B1 0091/0091 2025-10-21T15:12:22.126012 codethink04-arm64 UNK_CLIENT EE38BB448F7A2B81_0002SID pssmcreate_unit_test extra issued_subhit=4 -4176708/000/0002/R EE38BB448F7A22B1 0092/0092 2025-10-21T15:12:22.126189 codethink04-arm64 UNK_CLIENT EE38BB448F7A2B81_0002SID pssmcreate_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -4176708/000/0002/R EE38BB448F7A22B1 0093/0093 2025-10-21T15:12:22.126209 codethink04-arm64 UNK_CLIENT EE38BB448F7A2B81_0002SID pssmcreate_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -4176708/000/0002/R EE38BB448F7A22B1 0094/0094 2025-10-21T15:12:22.126227 codethink04-arm64 UNK_CLIENT EE38BB448F7A2B81_0002SID pssmcreate_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -4176708/000/0002/R EE38BB448F7A22B1 0095/0095 2025-10-21T15:12:22.126243 codethink04-arm64 UNK_CLIENT EE38BB448F7A2B81_0002SID pssmcreate_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -4176708/000/0002/R EE38BB448F7A22B1 0096/0096 2025-10-21T15:12:22.126256 codethink04-arm64 UNK_CLIENT EE38BB448F7A2B81_0002SID pssmcreate_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -4176708/000/0002/R EE38BB448F7A22B1 0097/0097 2025-10-21T15:12:22.126417 codethink04-arm64 UNK_CLIENT EE38BB448F7A2B81_0002SID pssmcreate_unit_test extra issued_subhit=5 - -Maximum execution time of 200 second(s) is exceeded - -real 200.19 -user 0.19 -sys 0.10 -Start time : 10/21/2025 15:09:31 -Stop time : 10/21/2025 15:12:51 -Load averages: 8.65 10.71 20.38 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -traceback_unit_test -====================================================================== - -04575/000/0000/PB EE3811DF8F7A2F41 0001/0001 2025-10-21T15:12:52.843734 codethink04-arm64 UNK_CLIENT UNK_SESSION traceback_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/traceback_unit_test -04575/000/0000/PB EE3811DF8F7A2F41 0002/0002 2025-10-21T15:12:52.843940 codethink04-arm64 UNK_CLIENT UNK_SESSION traceback_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/traceback_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 8 test cases... -04575/000/0001/RB EE3811DF8F7A2F41 0003/0003 2025-10-21T15:12:52.845674 codethink04-arm64 UNK_CLIENT UNK_SESSION traceback_unit_test request-start test_name=testHSPUpdateWithTraceback&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -04575/000/0001/RE EE3811DF8F7A2F41 0004/0004 2025-10-21T15:12:52.846297 codethink04-arm64 UNK_CLIENT UNK_SESSION traceback_unit_test request-stop 200 0.000604867 0 0 -04575/000/0002/RB EE3811DF8F7A2F41 0005/0005 2025-10-21T15:12:52.846640 codethink04-arm64 UNK_CLIENT UNK_SESSION traceback_unit_test request-start test_name=testBLASTNTraceBack&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -04575/000/0002/R EE3811DF8F7A2F41 0006/0006 2025-10-21T15:12:52.847304 codethink04-arm64 UNK_CLIENT UNK_SESSION traceback_unit_test extra ncbi_phid=EE3811DF8F7A2F410000000000020001 -04575/000/0002/R EE3811DF8F7A2F41 0007/0007 2025-10-21T15:12:52.847332 codethink04-arm64 UNK_CLIENT UNK_SESSION traceback_unit_test extra issued_subhit=1 -04575/000/0002/R EE3811DF8F7A2F41 0008/0008 2025-10-21T15:12:52.847745 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=2 -04575/000/0002/R EE3811DF8F7A2F41 0009/0009 2025-10-21T15:12:52.847912 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -04575/000/0002/R EE3811DF8F7A2F41 0010/0010 2025-10-21T15:12:52.847939 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0011/0011 2025-10-21T15:12:52.847951 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -04575/000/0002/R EE3811DF8F7A2F41 0012/0012 2025-10-21T15:12:52.847961 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -04575/000/0002/R EE3811DF8F7A2F41 0013/0013 2025-10-21T15:12:52.847972 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0014/0014 2025-10-21T15:12:52.848160 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=3 -04575/000/0002/R EE3811DF8F7A2F41 0015/0015 2025-10-21T15:12:52.848362 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=4 -04575/000/0002/R EE3811DF8F7A2F41 0016/0016 2025-10-21T15:12:52.848455 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -04575/000/0002/R EE3811DF8F7A2F41 0017/0017 2025-10-21T15:12:52.848476 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0018/0018 2025-10-21T15:12:52.848486 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -04575/000/0002/R EE3811DF8F7A2F41 0019/0019 2025-10-21T15:12:52.848494 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -04575/000/0002/R EE3811DF8F7A2F41 0020/0020 2025-10-21T15:12:52.848503 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0021/0021 2025-10-21T15:12:52.848572 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=5 -04575/000/0002/R EE3811DF8F7A2F41 0022/0022 2025-10-21T15:12:53.848985 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=6 -04575/000/0002/R EE3811DF8F7A2F41 0023/0023 2025-10-21T15:12:53.849135 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -04575/000/0002/R EE3811DF8F7A2F41 0024/0024 2025-10-21T15:12:53.849151 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0025/0025 2025-10-21T15:12:53.849163 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -04575/000/0002/R EE3811DF8F7A2F41 0026/0026 2025-10-21T15:12:53.849173 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -04575/000/0002/R EE3811DF8F7A2F41 0027/0027 2025-10-21T15:12:53.849183 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0028/0028 2025-10-21T15:12:53.849299 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=7 -04575/000/0002/R EE3811DF8F7A2F41 0029/0029 2025-10-21T15:12:56.349744 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=8 -04575/000/0002/R EE3811DF8F7A2F41 0030/0030 2025-10-21T15:12:56.349891 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -04575/000/0002/R EE3811DF8F7A2F41 0031/0031 2025-10-21T15:12:56.349912 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0032/0032 2025-10-21T15:12:56.349923 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -04575/000/0002/R EE3811DF8F7A2F41 0033/0033 2025-10-21T15:12:56.349934 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -04575/000/0002/R EE3811DF8F7A2F41 0034/0034 2025-10-21T15:12:56.349943 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0035/0035 2025-10-21T15:12:56.350058 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=9 -04575/000/0002/R EE3811DF8F7A2F41 0036/0036 2025-10-21T15:13:01.100503 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=10 -04575/000/0002/R EE3811DF8F7A2F41 0037/0037 2025-10-21T15:13:01.100678 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -04575/000/0002/R EE3811DF8F7A2F41 0038/0038 2025-10-21T15:13:01.100695 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0039/0039 2025-10-21T15:13:01.100706 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -04575/000/0002/R EE3811DF8F7A2F41 0040/0040 2025-10-21T15:13:01.100716 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -04575/000/0002/R EE3811DF8F7A2F41 0041/0041 2025-10-21T15:13:01.100727 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0042/0042 2025-10-21T15:13:01.100914 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=11 -04575/000/0002/R EE3811DF8F7A2F41 0043/0043 2025-10-21T15:13:09.226345 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=12 -04575/000/0002/R EE3811DF8F7A2F41 0044/0044 2025-10-21T15:13:09.226501 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -04575/000/0002/R EE3811DF8F7A2F41 0045/0045 2025-10-21T15:13:09.226526 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0046/0046 2025-10-21T15:13:09.226537 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -04575/000/0002/R EE3811DF8F7A2F41 0047/0047 2025-10-21T15:13:09.226547 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -04575/000/0002/R EE3811DF8F7A2F41 0048/0048 2025-10-21T15:13:09.226557 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0049/0049 2025-10-21T15:13:09.226674 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=13 -04575/000/0002/R EE3811DF8F7A2F41 0050/0050 2025-10-21T15:13:22.414601 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=14 -04575/000/0002/R EE3811DF8F7A2F41 0051/0051 2025-10-21T15:13:22.414757 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -04575/000/0002/R EE3811DF8F7A2F41 0052/0052 2025-10-21T15:13:22.414771 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0053/0053 2025-10-21T15:13:22.414783 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -04575/000/0002/R EE3811DF8F7A2F41 0054/0054 2025-10-21T15:13:22.414794 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -04575/000/0002/R EE3811DF8F7A2F41 0055/0055 2025-10-21T15:13:22.414804 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0056/0056 2025-10-21T15:13:22.414918 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=15 -04575/000/0002/R EE3811DF8F7A2F41 0057/0057 2025-10-21T15:13:43.196564 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=16 -04575/000/0002/R EE3811DF8F7A2F41 0058/0058 2025-10-21T15:13:43.196711 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -04575/000/0002/R EE3811DF8F7A2F41 0059/0059 2025-10-21T15:13:43.196734 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0060/0060 2025-10-21T15:13:43.196746 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -04575/000/0002/R EE3811DF8F7A2F41 0061/0061 2025-10-21T15:13:43.196755 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -04575/000/0002/R EE3811DF8F7A2F41 0062/0062 2025-10-21T15:13:43.196766 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0063/0063 2025-10-21T15:13:43.196877 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=17 -04575/000/0002/R EE3811DF8F7A2F41 0064/0064 2025-10-21T15:14:13.197280 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=18 -04575/000/0002/R EE3811DF8F7A2F41 0065/0065 2025-10-21T15:14:13.197425 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -04575/000/0002/R EE3811DF8F7A2F41 0066/0066 2025-10-21T15:14:13.197440 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0067/0067 2025-10-21T15:14:13.197451 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -04575/000/0002/R EE3811DF8F7A2F41 0068/0068 2025-10-21T15:14:13.197462 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -04575/000/0002/R EE3811DF8F7A2F41 0069/0069 2025-10-21T15:14:13.197474 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0070/0070 2025-10-21T15:14:13.197586 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=19 -04575/000/0002/R EE3811DF8F7A2F41 0071/0071 2025-10-21T15:14:43.197998 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=20 -04575/000/0002/R EE3811DF8F7A2F41 0072/0072 2025-10-21T15:14:43.198148 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -04575/000/0002/R EE3811DF8F7A2F41 0073/0073 2025-10-21T15:14:43.198173 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0074/0074 2025-10-21T15:14:43.198185 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -04575/000/0002/R EE3811DF8F7A2F41 0075/0075 2025-10-21T15:14:43.198194 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -04575/000/0002/R EE3811DF8F7A2F41 0076/0076 2025-10-21T15:14:43.198206 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0077/0077 2025-10-21T15:14:43.199059 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=21 -04575/000/0002/R EE3811DF8F7A2F41 0078/0078 2025-10-21T15:15:13.199532 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=22 -04575/000/0002/R EE3811DF8F7A2F41 0079/0079 2025-10-21T15:15:13.199724 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -04575/000/0002/R EE3811DF8F7A2F41 0080/0080 2025-10-21T15:15:13.199740 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0081/0081 2025-10-21T15:15:13.199752 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -04575/000/0002/R EE3811DF8F7A2F41 0082/0082 2025-10-21T15:15:13.199763 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -04575/000/0002/R EE3811DF8F7A2F41 0083/0083 2025-10-21T15:15:13.199774 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0084/0084 2025-10-21T15:15:13.199905 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=23 -04575/000/0002/R EE3811DF8F7A2F41 0085/0085 2025-10-21T15:15:43.200331 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=24 -04575/000/0002/R EE3811DF8F7A2F41 0086/0086 2025-10-21T15:15:43.200484 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -04575/000/0002/R EE3811DF8F7A2F41 0087/0087 2025-10-21T15:15:43.200507 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0088/0088 2025-10-21T15:15:43.200518 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -04575/000/0002/R EE3811DF8F7A2F41 0089/0089 2025-10-21T15:15:43.200528 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -04575/000/0002/R EE3811DF8F7A2F41 0090/0090 2025-10-21T15:15:43.200538 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -04575/000/0002/R EE3811DF8F7A2F41 0091/0091 2025-10-21T15:15:43.200667 codethink04-arm64 UNK_CLIENT EE3811DF8F7A2F41_0002SID traceback_unit_test extra issued_subhit=25 - -Maximum execution time of 200 second(s) is exceeded - -real 200.13 -user 0.13 -sys 0.03 -Start time : 10/21/2025 15:12:52 -Stop time : 10/21/2025 15:16:12 -Load averages: 17.57 14.61 20.07 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -prelimsearch_unit_test -====================================================================== - -09948/000/0000/PB EE3826DC8F7A3BD1 0001/0001 2025-10-21T15:16:13.817574 codethink04-arm64 UNK_CLIENT UNK_SESSION prelimsearch_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/prelimsearch_unit_test -09948/000/0000/PB EE3826DC8F7A3BD1 0002/0002 2025-10-21T15:16:13.817777 codethink04-arm64 UNK_CLIENT UNK_SESSION prelimsearch_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/prelimsearch_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 3 test cases... -09948/000/0001/RB EE3826DC8F7A3BD1 0003/0003 2025-10-21T15:16:13.819971 codethink04-arm64 UNK_CLIENT UNK_SESSION prelimsearch_unit_test request-start test_name=SplitNucleotideQuery&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -09948/000/0001/R EE3826DC8F7A3BD1 0004/0004 2025-10-21T15:16:13.822898 codethink04-arm64 UNK_CLIENT UNK_SESSION prelimsearch_unit_test extra ncbi_phid=EE3826DC8F7A3BD10000000000010001 -09948/000/0001/R EE3826DC8F7A3BD1 0005/0005 2025-10-21T15:16:13.822930 codethink04-arm64 UNK_CLIENT UNK_SESSION prelimsearch_unit_test extra issued_subhit=1 -09948/000/0001/R EE3826DC8F7A3BD1 0006/0006 2025-10-21T15:16:13.823492 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test extra issued_subhit=2 -09948/000/0001/R EE3826DC8F7A3BD1 0007/0007 2025-10-21T15:16:13.823634 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -09948/000/0001/R EE3826DC8F7A3BD1 0008/0008 2025-10-21T15:16:13.823661 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -09948/000/0001/R EE3826DC8F7A3BD1 0009/0009 2025-10-21T15:16:13.823678 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -09948/000/0001/R EE3826DC8F7A3BD1 0010/0010 2025-10-21T15:16:13.823688 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -09948/000/0001/R EE3826DC8F7A3BD1 0011/0011 2025-10-21T15:16:13.823698 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -09948/000/0001/R EE3826DC8F7A3BD1 0012/0012 2025-10-21T15:16:13.823891 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test extra issued_subhit=3 -09948/000/0001/R EE3826DC8F7A3BD1 0013/0013 2025-10-21T15:16:13.824087 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test extra issued_subhit=4 -09948/000/0001/R EE3826DC8F7A3BD1 0014/0014 2025-10-21T15:16:13.824178 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -09948/000/0001/R EE3826DC8F7A3BD1 0015/0015 2025-10-21T15:16:13.824190 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -09948/000/0001/R EE3826DC8F7A3BD1 0016/0016 2025-10-21T15:16:13.824209 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -09948/000/0001/R EE3826DC8F7A3BD1 0017/0017 2025-10-21T15:16:13.824219 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -09948/000/0001/R EE3826DC8F7A3BD1 0018/0018 2025-10-21T15:16:13.824228 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -09948/000/0001/R EE3826DC8F7A3BD1 0019/0019 2025-10-21T15:16:13.824301 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test extra issued_subhit=5 -09948/000/0001/R EE3826DC8F7A3BD1 0020/0020 2025-10-21T15:16:14.824711 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test extra issued_subhit=6 -09948/000/0001/R EE3826DC8F7A3BD1 0021/0021 2025-10-21T15:16:14.824856 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -09948/000/0001/R EE3826DC8F7A3BD1 0022/0022 2025-10-21T15:16:14.824873 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -09948/000/0001/R EE3826DC8F7A3BD1 0023/0023 2025-10-21T15:16:14.824888 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -09948/000/0001/R EE3826DC8F7A3BD1 0024/0024 2025-10-21T15:16:14.824899 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -09948/000/0001/R EE3826DC8F7A3BD1 0025/0025 2025-10-21T15:16:14.824911 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -09948/000/0001/R EE3826DC8F7A3BD1 0026/0026 2025-10-21T15:16:14.825044 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test extra issued_subhit=7 -09948/000/0001/R EE3826DC8F7A3BD1 0027/0027 2025-10-21T15:16:17.325474 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test extra issued_subhit=8 -09948/000/0001/R EE3826DC8F7A3BD1 0028/0028 2025-10-21T15:16:17.325625 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -09948/000/0001/R EE3826DC8F7A3BD1 0029/0029 2025-10-21T15:16:17.325643 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -09948/000/0001/R EE3826DC8F7A3BD1 0030/0030 2025-10-21T15:16:17.325667 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -09948/000/0001/R EE3826DC8F7A3BD1 0031/0031 2025-10-21T15:16:17.325679 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -09948/000/0001/R EE3826DC8F7A3BD1 0032/0032 2025-10-21T15:16:17.325691 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -09948/000/0001/R EE3826DC8F7A3BD1 0033/0033 2025-10-21T15:16:17.325835 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test extra issued_subhit=9 -09948/000/0001/R EE3826DC8F7A3BD1 0034/0034 2025-10-21T15:16:22.076366 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test extra issued_subhit=10 -09948/000/0001/R EE3826DC8F7A3BD1 0035/0035 2025-10-21T15:16:22.076516 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -09948/000/0001/R EE3826DC8F7A3BD1 0036/0036 2025-10-21T15:16:22.076534 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -09948/000/0001/R EE3826DC8F7A3BD1 0037/0037 2025-10-21T15:16:22.076549 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -09948/000/0001/R EE3826DC8F7A3BD1 0038/0038 2025-10-21T15:16:22.076561 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -09948/000/0001/R EE3826DC8F7A3BD1 0039/0039 2025-10-21T15:16:22.076573 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -09948/000/0001/R EE3826DC8F7A3BD1 0040/0040 2025-10-21T15:16:22.077660 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: BLAST(CBlastException::eInvalid) "blast_setup_cxx.cpp", line 651: ncbi::blast::SetupQueries_OMF() --- Warning: failed to send request: NULL -09948/000/0001/R EE3826DC8F7A3BD1 0041/0041 2025-10-21T15:16:22.077681 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test Error: BLAST "prelimsearch_unit_test.cpp", line 140: prelimsearch::SplitNucleotideQuery_invoker() --- Uncaught exception in "SplitNucleotideQuery"(CBlastException::eInvalid) Warning: failed to send request: NULL -09948/000/0001/RE EE3826DC8F7A3BD1 0043/0043 2025-10-21T15:16:22.077968 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3BD1_0001SID prelimsearch_unit_test request-stop 500 8.258003950 0 0 -unknown location(0): fatal error: in "prelimsearch/SplitNucleotideQuery": NCBI C++ Exception: - Error: BLAST(CBlastException::eInvalid) "./c++/src/algo/blast/api/blast_setup_cxx.cpp", line 651: ncbi::blast::SetupQueries_OMF() --- Warning: failed to send request: NULL - -./c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp(140): last checkpoint: "SplitNucleotideQuery" entry. -09948/000/0002/RB EE3826DC8F7A3BD1 0044/0044 2025-10-21T15:16:22.078644 codethink04-arm64 UNK_CLIENT UNK_SESSION prelimsearch_unit_test request-start test_name=BuildCStd_seg_blastn&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -09948/000/0002/R EE3826DC8F7A3BD1 0045/0045 2025-10-21T15:16:22.079076 codethink04-arm64 UNK_CLIENT UNK_SESSION prelimsearch_unit_test extra ncbi_phid=EE3826DC8F7A3BD10000000000020002 -09948/000/0002/R EE3826DC8F7A3BD1 0046/0046 2025-10-21T15:16:22.079095 codethink04-arm64 UNK_CLIENT UNK_SESSION prelimsearch_unit_test extra issued_subhit=1 -09948/000/0002/R EE3826DC8F7A3BD1 0047/0047 2025-10-21T15:16:30.204595 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test extra issued_subhit=2 -09948/000/0002/R EE3826DC8F7A3BD1 0048/0048 2025-10-21T15:16:30.204757 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -09948/000/0002/R EE3826DC8F7A3BD1 0049/0049 2025-10-21T15:16:30.204775 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -09948/000/0002/R EE3826DC8F7A3BD1 0050/0050 2025-10-21T15:16:30.204789 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -09948/000/0002/R EE3826DC8F7A3BD1 0051/0051 2025-10-21T15:16:30.204800 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -09948/000/0002/R EE3826DC8F7A3BD1 0052/0052 2025-10-21T15:16:30.204812 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -09948/000/0002/R EE3826DC8F7A3BD1 0053/0053 2025-10-21T15:16:30.204944 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test extra issued_subhit=3 -09948/000/0002/R EE3826DC8F7A3BD1 0054/0054 2025-10-21T15:16:43.392841 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test extra issued_subhit=4 -09948/000/0002/R EE3826DC8F7A3BD1 0055/0055 2025-10-21T15:16:43.393000 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -09948/000/0002/R EE3826DC8F7A3BD1 0056/0056 2025-10-21T15:16:43.393017 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -09948/000/0002/R EE3826DC8F7A3BD1 0057/0057 2025-10-21T15:16:43.393030 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -09948/000/0002/R EE3826DC8F7A3BD1 0058/0058 2025-10-21T15:16:43.393045 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -09948/000/0002/R EE3826DC8F7A3BD1 0059/0059 2025-10-21T15:16:43.393056 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -09948/000/0002/R EE3826DC8F7A3BD1 0060/0060 2025-10-21T15:16:43.393184 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test extra issued_subhit=5 -09948/000/0002/R EE3826DC8F7A3BD1 0061/0061 2025-10-21T15:17:04.174832 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test extra issued_subhit=6 -09948/000/0002/R EE3826DC8F7A3BD1 0062/0062 2025-10-21T15:17:04.174982 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -09948/000/0002/R EE3826DC8F7A3BD1 0063/0063 2025-10-21T15:17:04.174999 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -09948/000/0002/R EE3826DC8F7A3BD1 0064/0064 2025-10-21T15:17:04.175013 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -09948/000/0002/R EE3826DC8F7A3BD1 0065/0065 2025-10-21T15:17:04.175024 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -09948/000/0002/R EE3826DC8F7A3BD1 0066/0066 2025-10-21T15:17:04.175034 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -09948/000/0002/R EE3826DC8F7A3BD1 0067/0067 2025-10-21T15:17:04.175169 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test extra issued_subhit=7 -09948/000/0002/R EE3826DC8F7A3BD1 0068/0068 2025-10-21T15:17:34.175531 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test extra issued_subhit=8 -09948/000/0002/R EE3826DC8F7A3BD1 0069/0069 2025-10-21T15:17:34.175684 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -09948/000/0002/R EE3826DC8F7A3BD1 0070/0070 2025-10-21T15:17:34.175703 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -09948/000/0002/R EE3826DC8F7A3BD1 0071/0071 2025-10-21T15:17:34.175732 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -09948/000/0002/R EE3826DC8F7A3BD1 0072/0072 2025-10-21T15:17:34.175744 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -09948/000/0002/R EE3826DC8F7A3BD1 0073/0073 2025-10-21T15:17:34.175756 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -09948/000/0002/R EE3826DC8F7A3BD1 0074/0074 2025-10-21T15:17:34.175891 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test extra issued_subhit=9 -09948/000/0002/R EE3826DC8F7A3BD1 0075/0075 2025-10-21T15:18:04.176288 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test extra issued_subhit=10 -09948/000/0002/R EE3826DC8F7A3BD1 0076/0076 2025-10-21T15:18:04.176552 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -09948/000/0002/R EE3826DC8F7A3BD1 0077/0077 2025-10-21T15:18:04.176572 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -09948/000/0002/R EE3826DC8F7A3BD1 0078/0078 2025-10-21T15:18:04.176587 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -09948/000/0002/R EE3826DC8F7A3BD1 0079/0079 2025-10-21T15:18:04.176600 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -09948/000/0002/R EE3826DC8F7A3BD1 0080/0080 2025-10-21T15:18:04.176612 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -09948/000/0002/R EE3826DC8F7A3BD1 0081/0081 2025-10-21T15:18:04.176954 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: BLAST(CBlastException::eInvalid) "blast_setup_cxx.cpp", line 651: ncbi::blast::SetupQueries_OMF() --- Warning: failed to send request: NULL -09948/000/0002/R EE3826DC8F7A3BD1 0082/0082 2025-10-21T15:18:04.176966 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test Error: BLAST "prelimsearch_unit_test.cpp", line 169: prelimsearch::BuildCStd_seg_blastn_invoker() --- Uncaught exception in "BuildCStd_seg_blastn"(CBlastException::eInvalid) Warning: failed to send request: NULL -09948/000/0002/RE EE3826DC8F7A3BD1 0084/0084 2025-10-21T15:18:04.177360 codethink04-arm64 UNK_CLIENT EE3826DC8F7A3CE1_0002SID prelimsearch_unit_test request-stop 500 102.098721027 0 0 -unknown location(0): fatal error: in "prelimsearch/BuildCStd_seg_blastn": NCBI C++ Exception: - Error: BLAST(CBlastException::eInvalid) "./c++/src/algo/blast/api/blast_setup_cxx.cpp", line 651: ncbi::blast::SetupQueries_OMF() --- Warning: failed to send request: NULL - -./c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp(169): last checkpoint: "BuildCStd_seg_blastn" entry. -09948/000/0003/RB EE3826DC8F7A3BD1 0085/0085 2025-10-21T15:18:04.178032 codethink04-arm64 UNK_CLIENT UNK_SESSION prelimsearch_unit_test request-start test_name=BuildCStd_seg_tblastx&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -09948/000/0003/R EE3826DC8F7A3BD1 0086/0086 2025-10-21T15:18:04.178470 codethink04-arm64 UNK_CLIENT UNK_SESSION prelimsearch_unit_test extra ncbi_phid=EE3826DC8F7A3BD10000000000030003 -09948/000/0003/R EE3826DC8F7A3BD1 0087/0087 2025-10-21T15:18:04.178488 codethink04-arm64 UNK_CLIENT UNK_SESSION prelimsearch_unit_test extra issued_subhit=1 -09948/000/0003/R EE3826DC8F7A3BD1 0088/0088 2025-10-21T15:18:34.179346 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test extra issued_subhit=2 -09948/000/0003/R EE3826DC8F7A3BD1 0089/0089 2025-10-21T15:18:34.434447 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -09948/000/0003/R EE3826DC8F7A3BD1 0090/0090 2025-10-21T15:18:34.434506 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -09948/000/0003/R EE3826DC8F7A3BD1 0091/0091 2025-10-21T15:18:34.434539 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -09948/000/0003/R EE3826DC8F7A3BD1 0092/0092 2025-10-21T15:18:34.434568 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -09948/000/0003/R EE3826DC8F7A3BD1 0093/0093 2025-10-21T15:18:34.434594 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -09948/000/0003/R EE3826DC8F7A3BD1 0094/0094 2025-10-21T15:18:34.434844 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test extra issued_subhit=3 -09948/000/0003/R EE3826DC8F7A3BD1 0095/0095 2025-10-21T15:19:04.435321 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test extra issued_subhit=4 -09948/000/0003/R EE3826DC8F7A3BD1 0096/0096 2025-10-21T15:19:04.435481 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -09948/000/0003/R EE3826DC8F7A3BD1 0097/0097 2025-10-21T15:19:04.435499 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -09948/000/0003/R EE3826DC8F7A3BD1 0098/0098 2025-10-21T15:19:04.435513 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -09948/000/0003/R EE3826DC8F7A3BD1 0099/0099 2025-10-21T15:19:04.435533 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -09948/000/0003/R EE3826DC8F7A3BD1 0100/0100 2025-10-21T15:19:04.435545 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -09948/000/0003/R EE3826DC8F7A3BD1 0101/0101 2025-10-21T15:19:04.435680 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test extra issued_subhit=5 -09948/000/0003/R EE3826DC8F7A3BD1 0102/0102 2025-10-21T15:19:34.436091 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test extra issued_subhit=6 -09948/000/0003/R EE3826DC8F7A3BD1 0103/0103 2025-10-21T15:19:34.436248 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#13000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -09948/000/0003/R EE3826DC8F7A3BD1 0104/0104 2025-10-21T15:19:34.436267 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -09948/000/0003/R EE3826DC8F7A3BD1 0105/0105 2025-10-21T15:19:34.436281 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -09948/000/0003/R EE3826DC8F7A3BD1 0106/0106 2025-10-21T15:19:34.436293 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -09948/000/0003/R EE3826DC8F7A3BD1 0107/0107 2025-10-21T15:19:34.436305 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -09948/000/0003/R EE3826DC8F7A3BD1 0108/0108 2025-10-21T15:19:34.436440 codethink04-arm64 UNK_CLIENT EE3826DC8F7A44A1_0003SID prelimsearch_unit_test extra issued_subhit=7 - -Maximum execution time of 200 second(s) is exceeded - -real 203.95 -user 0.13 -sys 0.35 -Start time : 10/21/2025 15:16:13 -Stop time : 10/21/2025 15:19:37 -Load averages: 29.11 20.71 21.31 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -split_query_unit_test -====================================================================== - -56898/000/0000/PB EE38DE428F7A48A1 0001/0001 2025-10-21T15:19:38.009445 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/split_query_unit_test -56898/000/0000/PB EE38DE428F7A48A1 0002/0002 2025-10-21T15:19:38.009642 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/split_query_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 23 test cases... -56898/000/0001/RB EE38DE428F7A48A1 0003/0003 2025-10-21T15:19:38.015561 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test request-start test_name=SplitQueriesIn1Chunk&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -56898/000/0001/RE EE38DE428F7A48A1 0004/0004 2025-10-21T15:19:38.017861 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test request-stop 200 0.002317905 0 0 -56898/000/0002/RB EE38DE428F7A48A1 0005/0005 2025-10-21T15:19:38.018200 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test request-start test_name=SplitQueriesRandomly&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -56898/000/0002/RE EE38DE428F7A48A1 0006/0006 2025-10-21T15:19:38.024203 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test request-stop 200 0.005995988 0 0 -56898/000/0003/RB EE38DE428F7A48A1 0007/0007 2025-10-21T15:19:38.024536 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test request-start test_name=Split4QueriesIn3Chunks&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -56898/000/0003/RE EE38DE428F7A48A1 0008/0008 2025-10-21T15:19:38.026701 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test request-stop 200 0.002162933 0 0 -56898/000/0004/RB EE38DE428F7A48A1 0009/0009 2025-10-21T15:19:38.026990 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test request-start test_name=QuerySplitter_BlastnSingleQueryMultiChunk_BothStrands&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -56898/000/0004/R EE38DE428F7A48A1 0010/0010 2025-10-21T15:19:38.029627 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test extra ncbi_phid=EE38DE428F7A48A10000000000040001 -56898/000/0004/R EE38DE428F7A48A1 0011/0011 2025-10-21T15:19:38.029659 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test extra issued_subhit=1 -56898/000/0004/R EE38DE428F7A48A1 0012/0012 2025-10-21T15:19:38.030055 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test extra issued_subhit=2 -56898/000/0004/R EE38DE428F7A48A1 0013/0013 2025-10-21T15:19:38.030200 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -56898/000/0004/R EE38DE428F7A48A1 0014/0014 2025-10-21T15:19:38.030223 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -56898/000/0004/R EE38DE428F7A48A1 0015/0015 2025-10-21T15:19:38.030235 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -56898/000/0004/R EE38DE428F7A48A1 0016/0016 2025-10-21T15:19:38.030244 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -56898/000/0004/R EE38DE428F7A48A1 0017/0017 2025-10-21T15:19:38.030262 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -56898/000/0004/R EE38DE428F7A48A1 0018/0018 2025-10-21T15:19:38.030474 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test extra issued_subhit=3 -56898/000/0004/R EE38DE428F7A48A1 0019/0019 2025-10-21T15:19:38.030681 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test extra issued_subhit=4 -56898/000/0004/R EE38DE428F7A48A1 0020/0020 2025-10-21T15:19:38.030781 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -56898/000/0004/R EE38DE428F7A48A1 0021/0021 2025-10-21T15:19:38.030794 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -56898/000/0004/R EE38DE428F7A48A1 0022/0022 2025-10-21T15:19:38.030803 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -56898/000/0004/R EE38DE428F7A48A1 0023/0023 2025-10-21T15:19:38.030812 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -56898/000/0004/R EE38DE428F7A48A1 0024/0024 2025-10-21T15:19:38.030821 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -56898/000/0004/R EE38DE428F7A48A1 0025/0025 2025-10-21T15:19:38.030891 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test extra issued_subhit=5 -56898/000/0004/R EE38DE428F7A48A1 0026/0026 2025-10-21T15:19:39.031340 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test extra issued_subhit=6 -56898/000/0004/R EE38DE428F7A48A1 0027/0027 2025-10-21T15:19:39.031503 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -56898/000/0004/R EE38DE428F7A48A1 0028/0028 2025-10-21T15:19:39.031525 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -56898/000/0004/R EE38DE428F7A48A1 0029/0029 2025-10-21T15:19:39.031537 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -56898/000/0004/R EE38DE428F7A48A1 0030/0030 2025-10-21T15:19:39.031547 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -56898/000/0004/R EE38DE428F7A48A1 0031/0031 2025-10-21T15:19:39.031566 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -56898/000/0004/R EE38DE428F7A48A1 0032/0032 2025-10-21T15:19:39.031690 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test extra issued_subhit=7 -56898/000/0004/R EE38DE428F7A48A1 0033/0033 2025-10-21T15:19:41.532122 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test extra issued_subhit=8 -56898/000/0004/R EE38DE428F7A48A1 0034/0034 2025-10-21T15:19:41.532280 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -56898/000/0004/R EE38DE428F7A48A1 0035/0035 2025-10-21T15:19:41.532297 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -56898/000/0004/R EE38DE428F7A48A1 0036/0036 2025-10-21T15:19:41.532310 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -56898/000/0004/R EE38DE428F7A48A1 0037/0037 2025-10-21T15:19:41.532319 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -56898/000/0004/R EE38DE428F7A48A1 0038/0038 2025-10-21T15:19:41.532329 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -56898/000/0004/R EE38DE428F7A48A1 0039/0039 2025-10-21T15:19:41.532446 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test extra issued_subhit=9 -56898/000/0004/R EE38DE428F7A48A1 0040/0040 2025-10-21T15:19:46.282862 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test extra issued_subhit=10 -56898/000/0004/R EE38DE428F7A48A1 0041/0041 2025-10-21T15:19:46.283010 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -56898/000/0004/R EE38DE428F7A48A1 0042/0042 2025-10-21T15:19:46.283027 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -56898/000/0004/R EE38DE428F7A48A1 0043/0043 2025-10-21T15:19:46.283039 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -56898/000/0004/R EE38DE428F7A48A1 0044/0044 2025-10-21T15:19:46.283048 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -56898/000/0004/R EE38DE428F7A48A1 0045/0045 2025-10-21T15:19:46.283064 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -./c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp(671): fatal error: in "split_query/QuerySplitter_BlastnSingleQueryMultiChunk_BothStrands": critical check !kQueryIndices.empty() has failed -56898/000/0004/RE EE38DE428F7A48A1 0046/0046 2025-10-21T15:19:46.284533 codethink04-arm64 UNK_CLIENT EE38DE428F7A48A1_0004SID split_query_unit_test request-stop 500 8.257529020 0 0 -56898/000/0005/RB EE38DE428F7A48A1 0047/0047 2025-10-21T15:19:46.284937 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test request-start test_name=QuerySplitter_BlastnSingleQueryMultiChunk_PlusStrand&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -56898/000/0005/R EE38DE428F7A48A1 0048/0048 2025-10-21T15:19:46.287180 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test extra ncbi_phid=EE38DE428F7A48A10000000000050002 -56898/000/0005/R EE38DE428F7A48A1 0049/0049 2025-10-21T15:19:46.287219 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test extra issued_subhit=1 -56898/000/0005/R EE38DE428F7A48A1 0050/0050 2025-10-21T15:19:54.412633 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test extra issued_subhit=2 -56898/000/0005/R EE38DE428F7A48A1 0051/0051 2025-10-21T15:19:54.412785 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -56898/000/0005/R EE38DE428F7A48A1 0052/0052 2025-10-21T15:19:54.412801 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -56898/000/0005/R EE38DE428F7A48A1 0053/0053 2025-10-21T15:19:54.412813 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -56898/000/0005/R EE38DE428F7A48A1 0054/0054 2025-10-21T15:19:54.412822 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -56898/000/0005/R EE38DE428F7A48A1 0055/0055 2025-10-21T15:19:54.412833 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -56898/000/0005/R EE38DE428F7A48A1 0056/0056 2025-10-21T15:19:54.412949 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test extra issued_subhit=3 -56898/000/0005/R EE38DE428F7A48A1 0057/0057 2025-10-21T15:20:07.600861 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test extra issued_subhit=4 -56898/000/0005/R EE38DE428F7A48A1 0058/0058 2025-10-21T15:20:07.601017 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -56898/000/0005/R EE38DE428F7A48A1 0059/0059 2025-10-21T15:20:07.601043 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -56898/000/0005/R EE38DE428F7A48A1 0060/0060 2025-10-21T15:20:07.601055 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -56898/000/0005/R EE38DE428F7A48A1 0061/0061 2025-10-21T15:20:07.601064 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -56898/000/0005/R EE38DE428F7A48A1 0062/0062 2025-10-21T15:20:07.601074 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -56898/000/0005/R EE38DE428F7A48A1 0063/0063 2025-10-21T15:20:07.601196 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test extra issued_subhit=5 -56898/000/0005/R EE38DE428F7A48A1 0064/0064 2025-10-21T15:20:28.382866 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test extra issued_subhit=6 -56898/000/0005/R EE38DE428F7A48A1 0065/0065 2025-10-21T15:20:28.383018 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -56898/000/0005/R EE38DE428F7A48A1 0066/0066 2025-10-21T15:20:28.383034 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -56898/000/0005/R EE38DE428F7A48A1 0067/0067 2025-10-21T15:20:28.383046 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -56898/000/0005/R EE38DE428F7A48A1 0068/0068 2025-10-21T15:20:28.383055 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -56898/000/0005/R EE38DE428F7A48A1 0069/0069 2025-10-21T15:20:28.383066 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -56898/000/0005/R EE38DE428F7A48A1 0070/0070 2025-10-21T15:20:28.383183 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test extra issued_subhit=7 -56898/000/0005/R EE38DE428F7A48A1 0071/0071 2025-10-21T15:20:58.383598 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test extra issued_subhit=8 -56898/000/0005/R EE38DE428F7A48A1 0072/0072 2025-10-21T15:20:58.383747 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -56898/000/0005/R EE38DE428F7A48A1 0073/0073 2025-10-21T15:20:58.383776 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -56898/000/0005/R EE38DE428F7A48A1 0074/0074 2025-10-21T15:20:58.383788 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -56898/000/0005/R EE38DE428F7A48A1 0075/0075 2025-10-21T15:20:58.383797 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -56898/000/0005/R EE38DE428F7A48A1 0076/0076 2025-10-21T15:20:58.383807 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -56898/000/0005/R EE38DE428F7A48A1 0077/0077 2025-10-21T15:20:58.383919 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test extra issued_subhit=9 -56898/000/0005/R EE38DE428F7A48A1 0078/0078 2025-10-21T15:21:28.384470 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test extra issued_subhit=10 -56898/000/0005/R EE38DE428F7A48A1 0079/0079 2025-10-21T15:21:28.384660 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -56898/000/0005/R EE38DE428F7A48A1 0080/0080 2025-10-21T15:21:28.384686 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -56898/000/0005/R EE38DE428F7A48A1 0081/0081 2025-10-21T15:21:28.384705 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -56898/000/0005/R EE38DE428F7A48A1 0082/0082 2025-10-21T15:21:28.384721 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -56898/000/0005/R EE38DE428F7A48A1 0083/0083 2025-10-21T15:21:28.384737 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -./c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp(671): fatal error: in "split_query/QuerySplitter_BlastnSingleQueryMultiChunk_PlusStrand": critical check !kQueryIndices.empty() has failed -56898/000/0005/RE EE38DE428F7A48A1 0084/0084 2025-10-21T15:21:28.385242 codethink04-arm64 UNK_CLIENT EE38DE428F7A49A1_0005SID split_query_unit_test request-stop 500 102.100302219 0 0 -56898/000/0006/RB EE38DE428F7A48A1 0085/0085 2025-10-21T15:21:28.385815 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test request-start test_name=QuerySplitter_BlastnSingleQueryMultiChunk_MinusStrand&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -56898/000/0006/R EE38DE428F7A48A1 0086/0086 2025-10-21T15:21:28.390046 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test extra ncbi_phid=EE38DE428F7A48A10000000000060003 -56898/000/0006/R EE38DE428F7A48A1 0087/0087 2025-10-21T15:21:28.390073 codethink04-arm64 UNK_CLIENT UNK_SESSION split_query_unit_test extra issued_subhit=1 -56898/000/0006/R EE38DE428F7A48A1 0088/0088 2025-10-21T15:21:58.390817 codethink04-arm64 UNK_CLIENT EE38DE428F7A5161_0006SID split_query_unit_test extra issued_subhit=2 -56898/000/0006/R EE38DE428F7A48A1 0089/0089 2025-10-21T15:21:58.391058 codethink04-arm64 UNK_CLIENT EE38DE428F7A5161_0006SID split_query_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -56898/000/0006/R EE38DE428F7A48A1 0090/0090 2025-10-21T15:21:58.391094 codethink04-arm64 UNK_CLIENT EE38DE428F7A5161_0006SID split_query_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -56898/000/0006/R EE38DE428F7A48A1 0091/0091 2025-10-21T15:21:58.391123 codethink04-arm64 UNK_CLIENT EE38DE428F7A5161_0006SID split_query_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -56898/000/0006/R EE38DE428F7A48A1 0092/0092 2025-10-21T15:21:58.391147 codethink04-arm64 UNK_CLIENT EE38DE428F7A5161_0006SID split_query_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -56898/000/0006/R EE38DE428F7A48A1 0093/0093 2025-10-21T15:21:58.391170 codethink04-arm64 UNK_CLIENT EE38DE428F7A5161_0006SID split_query_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -56898/000/0006/R EE38DE428F7A48A1 0094/0094 2025-10-21T15:21:58.391444 codethink04-arm64 UNK_CLIENT EE38DE428F7A5161_0006SID split_query_unit_test extra issued_subhit=3 -56898/000/0006/R EE38DE428F7A48A1 0095/0095 2025-10-21T15:22:28.395536 codethink04-arm64 UNK_CLIENT EE38DE428F7A5161_0006SID split_query_unit_test extra issued_subhit=4 -56898/000/0006/R EE38DE428F7A48A1 0096/0096 2025-10-21T15:22:28.395689 codethink04-arm64 UNK_CLIENT EE38DE428F7A5161_0006SID split_query_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -56898/000/0006/R EE38DE428F7A48A1 0097/0097 2025-10-21T15:22:28.395706 codethink04-arm64 UNK_CLIENT EE38DE428F7A5161_0006SID split_query_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -56898/000/0006/R EE38DE428F7A48A1 0098/0098 2025-10-21T15:22:28.395718 codethink04-arm64 UNK_CLIENT EE38DE428F7A5161_0006SID split_query_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -56898/000/0006/R EE38DE428F7A48A1 0099/0099 2025-10-21T15:22:28.395727 codethink04-arm64 UNK_CLIENT EE38DE428F7A5161_0006SID split_query_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -56898/000/0006/R EE38DE428F7A48A1 0100/0100 2025-10-21T15:22:28.395737 codethink04-arm64 UNK_CLIENT EE38DE428F7A5161_0006SID split_query_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -56898/000/0006/R EE38DE428F7A48A1 0101/0101 2025-10-21T15:22:28.395862 codethink04-arm64 UNK_CLIENT EE38DE428F7A5161_0006SID split_query_unit_test extra issued_subhit=5 - -Maximum execution time of 200 second(s) is exceeded - -real 200.16 -user 0.17 -sys 0.05 -Start time : 10/21/2025 15:19:37 -Stop time : 10/21/2025 15:22:58 -Load averages: 11.34 16.42 19.55 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -scoreblk_unit_test -====================================================================== - -120633/000/0000/PB EE38D7398F7A5521 0001/0001 2025-10-21T15:22:58.223579 codethink04-arm64 UNK_CLIENT UNK_SESSION scoreblk_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/scoreblk_unit_test -120633/000/0000/PB EE38D7398F7A5521 0002/0002 2025-10-21T15:22:58.223942 codethink04-arm64 UNK_CLIENT UNK_SESSION scoreblk_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/scoreblk_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 8 test cases... -120633/000/0001/RB EE38D7398F7A5521 0003/0003 2025-10-21T15:22:58.234758 codethink04-arm64 UNK_CLIENT UNK_SESSION scoreblk_unit_test request-start test_name=GetScoreBlockNucl&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -120633/000/0001/R EE38D7398F7A5521 0004/0004 2025-10-21T15:22:58.236004 codethink04-arm64 UNK_CLIENT UNK_SESSION scoreblk_unit_test extra ncbi_phid=EE38D7398F7A55210000000000010001 -120633/000/0001/R EE38D7398F7A5521 0005/0005 2025-10-21T15:22:58.236066 codethink04-arm64 UNK_CLIENT UNK_SESSION scoreblk_unit_test extra issued_subhit=1 -120633/000/0001/R EE38D7398F7A5521 0006/0006 2025-10-21T15:22:58.237010 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=2 -120633/000/0001/R EE38D7398F7A5521 0007/0007 2025-10-21T15:22:58.237258 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -120633/000/0001/R EE38D7398F7A5521 0008/0008 2025-10-21T15:22:58.237306 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -120633/000/0001/R EE38D7398F7A5521 0009/0009 2025-10-21T15:22:58.237335 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -120633/000/0001/R EE38D7398F7A5521 0010/0010 2025-10-21T15:22:58.237360 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -120633/000/0001/R EE38D7398F7A5521 0011/0011 2025-10-21T15:22:58.237384 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -120633/000/0001/R EE38D7398F7A5521 0012/0012 2025-10-21T15:22:58.237720 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=3 -120633/000/0001/R EE38D7398F7A5521 0013/0013 2025-10-21T15:22:58.238239 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=4 -120633/000/0001/R EE38D7398F7A5521 0014/0014 2025-10-21T15:22:58.238453 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -120633/000/0001/R EE38D7398F7A5521 0015/0015 2025-10-21T15:22:58.238484 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -120633/000/0001/R EE38D7398F7A5521 0016/0016 2025-10-21T15:22:58.238524 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -120633/000/0001/R EE38D7398F7A5521 0017/0017 2025-10-21T15:22:58.238548 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -120633/000/0001/R EE38D7398F7A5521 0018/0018 2025-10-21T15:22:58.238570 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -120633/000/0001/R EE38D7398F7A5521 0019/0019 2025-10-21T15:22:58.238741 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=5 -120633/000/0001/R EE38D7398F7A5521 0020/0020 2025-10-21T15:22:59.239403 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=6 -120633/000/0001/R EE38D7398F7A5521 0021/0021 2025-10-21T15:22:59.239612 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -120633/000/0001/R EE38D7398F7A5521 0022/0022 2025-10-21T15:22:59.239641 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -120633/000/0001/R EE38D7398F7A5521 0023/0023 2025-10-21T15:22:59.239663 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -120633/000/0001/R EE38D7398F7A5521 0024/0024 2025-10-21T15:22:59.239682 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -120633/000/0001/R EE38D7398F7A5521 0025/0025 2025-10-21T15:22:59.239700 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -120633/000/0001/R EE38D7398F7A5521 0026/0026 2025-10-21T15:22:59.239889 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=7 -120633/000/0001/R EE38D7398F7A5521 0027/0027 2025-10-21T15:23:01.740746 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=8 -120633/000/0001/R EE38D7398F7A5521 0028/0028 2025-10-21T15:23:01.740992 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -120633/000/0001/R EE38D7398F7A5521 0029/0029 2025-10-21T15:23:01.741028 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -120633/000/0001/R EE38D7398F7A5521 0030/0030 2025-10-21T15:23:01.741066 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -120633/000/0001/R EE38D7398F7A5521 0031/0031 2025-10-21T15:23:01.741118 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -120633/000/0001/R EE38D7398F7A5521 0032/0032 2025-10-21T15:23:01.741143 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -120633/000/0001/R EE38D7398F7A5521 0033/0033 2025-10-21T15:23:01.741365 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=9 -120633/000/0001/R EE38D7398F7A5521 0034/0034 2025-10-21T15:23:06.492131 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=10 -120633/000/0001/R EE38D7398F7A5521 0035/0035 2025-10-21T15:23:06.492396 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -120633/000/0001/R EE38D7398F7A5521 0036/0036 2025-10-21T15:23:06.492431 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -120633/000/0001/R EE38D7398F7A5521 0037/0037 2025-10-21T15:23:06.492460 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -120633/000/0001/R EE38D7398F7A5521 0038/0038 2025-10-21T15:23:06.492486 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -120633/000/0001/R EE38D7398F7A5521 0039/0039 2025-10-21T15:23:06.492509 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -120633/000/0001/R EE38D7398F7A5521 0040/0040 2025-10-21T15:23:06.494245 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=11 -120633/000/0001/R EE38D7398F7A5521 0041/0041 2025-10-21T15:23:14.620182 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=12 -120633/000/0001/R EE38D7398F7A5521 0042/0042 2025-10-21T15:23:14.620427 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -120633/000/0001/R EE38D7398F7A5521 0043/0043 2025-10-21T15:23:14.620463 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -120633/000/0001/R EE38D7398F7A5521 0044/0044 2025-10-21T15:23:14.620497 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -120633/000/0001/R EE38D7398F7A5521 0045/0045 2025-10-21T15:23:14.620521 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -120633/000/0001/R EE38D7398F7A5521 0046/0046 2025-10-21T15:23:14.620544 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -120633/000/0001/R EE38D7398F7A5521 0047/0047 2025-10-21T15:23:14.620819 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=13 -120633/000/0001/R EE38D7398F7A5521 0048/0048 2025-10-21T15:23:27.809098 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=14 -120633/000/0001/R EE38D7398F7A5521 0049/0049 2025-10-21T15:23:27.809358 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -120633/000/0001/R EE38D7398F7A5521 0050/0050 2025-10-21T15:23:27.809393 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -120633/000/0001/R EE38D7398F7A5521 0051/0051 2025-10-21T15:23:27.809422 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -120633/000/0001/R EE38D7398F7A5521 0052/0052 2025-10-21T15:23:27.809447 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -120633/000/0001/R EE38D7398F7A5521 0053/0053 2025-10-21T15:23:27.809471 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -120633/000/0001/R EE38D7398F7A5521 0054/0054 2025-10-21T15:23:27.809713 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=15 -120633/000/0001/R EE38D7398F7A5521 0055/0055 2025-10-21T15:23:48.591414 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=16 -120633/000/0001/R EE38D7398F7A5521 0056/0056 2025-10-21T15:23:48.591565 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -120633/000/0001/R EE38D7398F7A5521 0057/0057 2025-10-21T15:23:48.591582 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -120633/000/0001/R EE38D7398F7A5521 0058/0058 2025-10-21T15:23:48.591603 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -120633/000/0001/R EE38D7398F7A5521 0059/0059 2025-10-21T15:23:48.591615 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -120633/000/0001/R EE38D7398F7A5521 0060/0060 2025-10-21T15:23:48.591627 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -120633/000/0001/R EE38D7398F7A5521 0061/0061 2025-10-21T15:23:48.591764 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=17 -120633/000/0001/R EE38D7398F7A5521 0062/0062 2025-10-21T15:24:18.592513 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=18 -120633/000/0001/R EE38D7398F7A5521 0063/0063 2025-10-21T15:24:18.592760 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -120633/000/0001/R EE38D7398F7A5521 0064/0064 2025-10-21T15:24:18.592858 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -120633/000/0001/R EE38D7398F7A5521 0065/0065 2025-10-21T15:24:18.593000 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -120633/000/0001/R EE38D7398F7A5521 0066/0066 2025-10-21T15:24:18.593036 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -120633/000/0001/R EE38D7398F7A5521 0067/0067 2025-10-21T15:24:18.593061 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -120633/000/0001/R EE38D7398F7A5521 0068/0068 2025-10-21T15:24:18.593304 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=19 -120633/000/0001/R EE38D7398F7A5521 0069/0069 2025-10-21T15:24:48.594101 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test extra issued_subhit=20 -120633/000/0001/R EE38D7398F7A5521 0070/0070 2025-10-21T15:24:48.594355 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -120633/000/0001/R EE38D7398F7A5521 0071/0071 2025-10-21T15:24:48.594389 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -120633/000/0001/R EE38D7398F7A5521 0072/0072 2025-10-21T15:24:48.594448 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -120633/000/0001/R EE38D7398F7A5521 0073/0073 2025-10-21T15:24:48.594477 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -120633/000/0001/R EE38D7398F7A5521 0074/0074 2025-10-21T15:24:48.594502 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -120633/000/0001/R EE38D7398F7A5521 0075/0075 2025-10-21T15:24:48.595524 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: BLAST(CBlastException::eInvalid) "blast_setup_cxx.cpp", line 651: ncbi::blast::SetupQueries_OMF() --- Warning: failed to send request: NULL -120633/000/0001/R EE38D7398F7A5521 0076/0076 2025-10-21T15:24:48.595561 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test Error: BLAST "scoreblk_unit_test.cpp", line 64: scoreblk::GetScoreBlockNucl_invoker() --- Uncaught exception in "GetScoreBlockNucl"(CBlastException::eInvalid) Warning: failed to send request: NULL -120633/000/0001/RE EE38D7398F7A5521 0078/0078 2025-10-21T15:24:48.595641 codethink04-arm64 UNK_CLIENT EE38D7398F7A5521_0001SID scoreblk_unit_test request-stop 500 110.360903978 0 0 -unknown location(0): fatal error: in "scoreblk/GetScoreBlockNucl": NCBI C++ Exception: - Error: BLAST(CBlastException::eInvalid) "./c++/src/algo/blast/api/blast_setup_cxx.cpp", line 651: ncbi::blast::SetupQueries_OMF() --- Warning: failed to send request: NULL - -./c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp(64): last checkpoint: "GetScoreBlockNucl" entry. -120633/000/0002/RB EE38D7398F7A5521 0079/0079 2025-10-21T15:24:48.596826 codethink04-arm64 UNK_CLIENT UNK_SESSION scoreblk_unit_test request-start test_name=GetScoreBlockProtein&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -120633/000/0002/R EE38D7398F7A5521 0080/0080 2025-10-21T15:24:48.596971 codethink04-arm64 UNK_CLIENT UNK_SESSION scoreblk_unit_test extra ncbi_phid=EE38D7398F7A55210000000000020002 -120633/000/0002/R EE38D7398F7A5521 0081/0081 2025-10-21T15:24:48.597003 codethink04-arm64 UNK_CLIENT UNK_SESSION scoreblk_unit_test extra issued_subhit=1 -120633/000/0002/R EE38D7398F7A5521 0082/0082 2025-10-21T15:25:18.597457 codethink04-arm64 UNK_CLIENT EE38D7398F7A5DE1_0002SID scoreblk_unit_test extra issued_subhit=2 -120633/000/0002/R EE38D7398F7A5521 0083/0083 2025-10-21T15:25:18.597611 codethink04-arm64 UNK_CLIENT EE38D7398F7A5DE1_0002SID scoreblk_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -120633/000/0002/R EE38D7398F7A5521 0084/0084 2025-10-21T15:25:18.597630 codethink04-arm64 UNK_CLIENT EE38D7398F7A5DE1_0002SID scoreblk_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -120633/000/0002/R EE38D7398F7A5521 0085/0085 2025-10-21T15:25:18.597643 codethink04-arm64 UNK_CLIENT EE38D7398F7A5DE1_0002SID scoreblk_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -120633/000/0002/R EE38D7398F7A5521 0086/0086 2025-10-21T15:25:18.597663 codethink04-arm64 UNK_CLIENT EE38D7398F7A5DE1_0002SID scoreblk_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -120633/000/0002/R EE38D7398F7A5521 0087/0087 2025-10-21T15:25:18.597675 codethink04-arm64 UNK_CLIENT EE38D7398F7A5DE1_0002SID scoreblk_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -120633/000/0002/R EE38D7398F7A5521 0088/0088 2025-10-21T15:25:18.597792 codethink04-arm64 UNK_CLIENT EE38D7398F7A5DE1_0002SID scoreblk_unit_test extra issued_subhit=3 -120633/000/0002/R EE38D7398F7A5521 0089/0089 2025-10-21T15:25:48.598682 codethink04-arm64 UNK_CLIENT EE38D7398F7A5DE1_0002SID scoreblk_unit_test extra issued_subhit=4 -120633/000/0002/R EE38D7398F7A5521 0090/0090 2025-10-21T15:25:48.598927 codethink04-arm64 UNK_CLIENT EE38D7398F7A5DE1_0002SID scoreblk_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -120633/000/0002/R EE38D7398F7A5521 0091/0091 2025-10-21T15:25:48.598992 codethink04-arm64 UNK_CLIENT EE38D7398F7A5DE1_0002SID scoreblk_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -120633/000/0002/R EE38D7398F7A5521 0092/0092 2025-10-21T15:25:48.599056 codethink04-arm64 UNK_CLIENT EE38D7398F7A5DE1_0002SID scoreblk_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -120633/000/0002/R EE38D7398F7A5521 0093/0093 2025-10-21T15:25:48.599125 codethink04-arm64 UNK_CLIENT EE38D7398F7A5DE1_0002SID scoreblk_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -120633/000/0002/R EE38D7398F7A5521 0094/0094 2025-10-21T15:25:48.599169 codethink04-arm64 UNK_CLIENT EE38D7398F7A5DE1_0002SID scoreblk_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -120633/000/0002/R EE38D7398F7A5521 0095/0095 2025-10-21T15:25:48.599565 codethink04-arm64 UNK_CLIENT EE38D7398F7A5DE1_0002SID scoreblk_unit_test extra issued_subhit=5 - -Maximum execution time of 200 second(s) is exceeded - -real 200.18 -user 0.17 -sys 0.08 -Start time : 10/21/2025 15:22:58 -Stop time : 10/21/2025 15:26:18 -Load averages: 6.44 11.67 17.06 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -rps_unit_test -====================================================================== - -144753/000/0000/PB EE3835718F7A61A1 0001/0001 2025-10-21T15:26:18.737175 codethink04-arm64 UNK_CLIENT UNK_SESSION rps_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/rps_unit_test -144753/000/0000/PB EE3835718F7A61A1 0002/0002 2025-10-21T15:26:18.737346 codethink04-arm64 UNK_CLIENT UNK_SESSION rps_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/rps_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 6 test cases... -144753/000/0001/RB EE3835718F7A61A1 0003/0003 2025-10-21T15:26:18.739552 codethink04-arm64 UNK_CLIENT UNK_SESSION rps_unit_test request-start test_name=WholeSequenceMatch&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -144753/000/0001/R EE3835718F7A61A1 0004/0004 2025-10-21T15:26:18.740421 codethink04-arm64 UNK_CLIENT UNK_SESSION rps_unit_test extra ncbi_phid=EE3835718F7A61A10000000000010001 -144753/000/0001/R EE3835718F7A61A1 0005/0005 2025-10-21T15:26:18.740448 codethink04-arm64 UNK_CLIENT UNK_SESSION rps_unit_test extra issued_subhit=1 -144753/000/0001/R EE3835718F7A61A1 0006/0006 2025-10-21T15:26:18.740865 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=2 -144753/000/0001/R EE3835718F7A61A1 0007/0007 2025-10-21T15:26:18.740991 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -144753/000/0001/R EE3835718F7A61A1 0008/0008 2025-10-21T15:26:18.741018 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -144753/000/0001/R EE3835718F7A61A1 0009/0009 2025-10-21T15:26:18.741030 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -144753/000/0001/R EE3835718F7A61A1 0010/0010 2025-10-21T15:26:18.741040 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -144753/000/0001/R EE3835718F7A61A1 0011/0011 2025-10-21T15:26:18.741050 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -144753/000/0001/R EE3835718F7A61A1 0012/0012 2025-10-21T15:26:18.741229 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=3 -144753/000/0001/R EE3835718F7A61A1 0013/0013 2025-10-21T15:26:18.741426 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=4 -144753/000/0001/R EE3835718F7A61A1 0014/0014 2025-10-21T15:26:18.741509 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -144753/000/0001/R EE3835718F7A61A1 0015/0015 2025-10-21T15:26:18.741523 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -144753/000/0001/R EE3835718F7A61A1 0016/0016 2025-10-21T15:26:18.741541 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -144753/000/0001/R EE3835718F7A61A1 0017/0017 2025-10-21T15:26:18.741550 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -144753/000/0001/R EE3835718F7A61A1 0018/0018 2025-10-21T15:26:18.741558 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -144753/000/0001/R EE3835718F7A61A1 0019/0019 2025-10-21T15:26:18.741623 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=5 -144753/000/0001/R EE3835718F7A61A1 0020/0020 2025-10-21T15:26:19.742348 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=6 -144753/000/0001/R EE3835718F7A61A1 0021/0021 2025-10-21T15:26:19.742608 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -144753/000/0001/R EE3835718F7A61A1 0022/0022 2025-10-21T15:26:19.742644 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -144753/000/0001/R EE3835718F7A61A1 0023/0023 2025-10-21T15:26:19.742673 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -144753/000/0001/R EE3835718F7A61A1 0024/0024 2025-10-21T15:26:19.742699 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -144753/000/0001/R EE3835718F7A61A1 0025/0025 2025-10-21T15:26:19.742723 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -144753/000/0001/R EE3835718F7A61A1 0026/0026 2025-10-21T15:26:19.742945 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=7 -144753/000/0001/R EE3835718F7A61A1 0027/0027 2025-10-21T15:26:22.243782 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=8 -144753/000/0001/R EE3835718F7A61A1 0028/0028 2025-10-21T15:26:22.244024 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -144753/000/0001/R EE3835718F7A61A1 0029/0029 2025-10-21T15:26:22.244062 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -144753/000/0001/R EE3835718F7A61A1 0030/0030 2025-10-21T15:26:22.244105 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -144753/000/0001/R EE3835718F7A61A1 0031/0031 2025-10-21T15:26:22.244132 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -144753/000/0001/R EE3835718F7A61A1 0032/0032 2025-10-21T15:26:22.244155 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -144753/000/0001/R EE3835718F7A61A1 0033/0033 2025-10-21T15:26:22.244369 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=9 -144753/000/0001/R EE3835718F7A61A1 0034/0034 2025-10-21T15:26:26.995120 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=10 -144753/000/0001/R EE3835718F7A61A1 0035/0035 2025-10-21T15:26:27.001796 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -144753/000/0001/R EE3835718F7A61A1 0036/0036 2025-10-21T15:26:27.001843 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -144753/000/0001/R EE3835718F7A61A1 0037/0037 2025-10-21T15:26:27.001875 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -144753/000/0001/R EE3835718F7A61A1 0038/0038 2025-10-21T15:26:27.001902 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -144753/000/0001/R EE3835718F7A61A1 0039/0039 2025-10-21T15:26:27.001926 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -144753/000/0001/R EE3835718F7A61A1 0040/0040 2025-10-21T15:26:27.004626 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=11 -144753/000/0001/R EE3835718F7A61A1 0041/0041 2025-10-21T15:26:35.130452 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=12 -144753/000/0001/R EE3835718F7A61A1 0042/0042 2025-10-21T15:26:35.130721 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -144753/000/0001/R EE3835718F7A61A1 0043/0043 2025-10-21T15:26:35.130760 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -144753/000/0001/R EE3835718F7A61A1 0044/0044 2025-10-21T15:26:35.130794 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -144753/000/0001/R EE3835718F7A61A1 0045/0045 2025-10-21T15:26:35.130830 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -144753/000/0001/R EE3835718F7A61A1 0046/0046 2025-10-21T15:26:35.130855 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -144753/000/0001/R EE3835718F7A61A1 0047/0047 2025-10-21T15:26:35.131092 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=13 -144753/000/0001/R EE3835718F7A61A1 0048/0048 2025-10-21T15:26:48.319432 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=14 -144753/000/0001/R EE3835718F7A61A1 0049/0049 2025-10-21T15:26:48.319679 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -144753/000/0001/R EE3835718F7A61A1 0050/0050 2025-10-21T15:26:48.319718 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -144753/000/0001/R EE3835718F7A61A1 0051/0051 2025-10-21T15:26:48.319751 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -144753/000/0001/R EE3835718F7A61A1 0052/0052 2025-10-21T15:26:48.319778 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -144753/000/0001/R EE3835718F7A61A1 0053/0053 2025-10-21T15:26:48.319802 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -144753/000/0001/R EE3835718F7A61A1 0054/0054 2025-10-21T15:26:48.320040 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=15 -144753/000/0001/R EE3835718F7A61A1 0055/0055 2025-10-21T15:27:09.102151 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=16 -144753/000/0001/R EE3835718F7A61A1 0056/0056 2025-10-21T15:27:09.102412 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -144753/000/0001/R EE3835718F7A61A1 0057/0057 2025-10-21T15:27:09.102475 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -144753/000/0001/R EE3835718F7A61A1 0058/0058 2025-10-21T15:27:09.102507 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -144753/000/0001/R EE3835718F7A61A1 0059/0059 2025-10-21T15:27:09.102543 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -144753/000/0001/R EE3835718F7A61A1 0060/0060 2025-10-21T15:27:09.102569 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -144753/000/0001/R EE3835718F7A61A1 0061/0061 2025-10-21T15:27:09.102809 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=17 -144753/000/0001/R EE3835718F7A61A1 0062/0062 2025-10-21T15:27:39.103683 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=18 -144753/000/0001/R EE3835718F7A61A1 0063/0063 2025-10-21T15:27:39.103942 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -144753/000/0001/R EE3835718F7A61A1 0064/0064 2025-10-21T15:27:39.103983 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -144753/000/0001/R EE3835718F7A61A1 0065/0065 2025-10-21T15:27:39.104022 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -144753/000/0001/R EE3835718F7A61A1 0066/0066 2025-10-21T15:27:39.104050 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -144753/000/0001/R EE3835718F7A61A1 0067/0067 2025-10-21T15:27:39.104082 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -144753/000/0001/R EE3835718F7A61A1 0068/0068 2025-10-21T15:27:39.104324 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=19 -144753/000/0001/R EE3835718F7A61A1 0069/0069 2025-10-21T15:28:09.111252 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test extra issued_subhit=20 -144753/000/0001/R EE3835718F7A61A1 0070/0070 2025-10-21T15:28:09.111499 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -144753/000/0001/R EE3835718F7A61A1 0071/0071 2025-10-21T15:28:09.111537 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -144753/000/0001/R EE3835718F7A61A1 0072/0072 2025-10-21T15:28:09.111570 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -144753/000/0001/R EE3835718F7A61A1 0073/0073 2025-10-21T15:28:09.111606 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -144753/000/0001/R EE3835718F7A61A1 0074/0074 2025-10-21T15:28:09.111628 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -144753/000/0001/R EE3835718F7A61A1 0075/0075 2025-10-21T15:28:09.113357 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: BLAST(CBlastException::eInvalid) "blast_setup_cxx.cpp", line 651: ncbi::blast::SetupQueries_OMF() --- Warning: failed to send request: NULL -144753/000/0001/R EE3835718F7A61A1 0076/0076 2025-10-21T15:28:09.113395 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test Error: BLAST "rps_unit_test.cpp", line 214: rps::WholeSequenceMatch_invoker() --- Uncaught exception in "WholeSequenceMatch"(CBlastException::eInvalid) Warning: failed to send request: NULL -144753/000/0001/RE EE3835718F7A61A1 0078/0078 2025-10-21T15:28:09.113513 codethink04-arm64 UNK_CLIENT EE3835718F7A61A1_0001SID rps_unit_test request-stop 500 110.373965978 0 0 -unknown location(0): fatal error: in "rps/WholeSequenceMatch": NCBI C++ Exception: - Error: BLAST(CBlastException::eInvalid) "./c++/src/algo/blast/api/blast_setup_cxx.cpp", line 651: ncbi::blast::SetupQueries_OMF() --- Warning: failed to send request: NULL - -./c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp(214): last checkpoint: "WholeSequenceMatch" entry. -144753/000/0002/RB EE3835718F7A61A1 0079/0079 2025-10-21T15:28:09.114554 codethink04-arm64 UNK_CLIENT UNK_SESSION rps_unit_test request-start test_name=NuclSearchPlusStrand&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -144753/000/0002/R EE3835718F7A61A1 0080/0080 2025-10-21T15:28:09.114771 codethink04-arm64 UNK_CLIENT UNK_SESSION rps_unit_test extra ncbi_phid=EE3835718F7A61A10000000000020002 -144753/000/0002/R EE3835718F7A61A1 0081/0081 2025-10-21T15:28:09.114806 codethink04-arm64 UNK_CLIENT UNK_SESSION rps_unit_test extra issued_subhit=1 -144753/000/0002/R EE3835718F7A61A1 0082/0082 2025-10-21T15:28:39.115717 codethink04-arm64 UNK_CLIENT EE3835718F7A6A71_0002SID rps_unit_test extra issued_subhit=2 -144753/000/0002/R EE3835718F7A61A1 0083/0083 2025-10-21T15:28:39.116025 codethink04-arm64 UNK_CLIENT EE3835718F7A6A71_0002SID rps_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -144753/000/0002/R EE3835718F7A61A1 0084/0084 2025-10-21T15:28:39.116082 codethink04-arm64 UNK_CLIENT EE3835718F7A6A71_0002SID rps_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -144753/000/0002/R EE3835718F7A61A1 0085/0085 2025-10-21T15:28:39.116121 codethink04-arm64 UNK_CLIENT EE3835718F7A6A71_0002SID rps_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -144753/000/0002/R EE3835718F7A61A1 0086/0086 2025-10-21T15:28:39.116156 codethink04-arm64 UNK_CLIENT EE3835718F7A6A71_0002SID rps_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -144753/000/0002/R EE3835718F7A61A1 0087/0087 2025-10-21T15:28:39.116186 codethink04-arm64 UNK_CLIENT EE3835718F7A6A71_0002SID rps_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -144753/000/0002/R EE3835718F7A61A1 0088/0088 2025-10-21T15:28:39.116512 codethink04-arm64 UNK_CLIENT EE3835718F7A6A71_0002SID rps_unit_test extra issued_subhit=3 -144753/000/0002/R EE3835718F7A61A1 0089/0089 2025-10-21T15:29:09.117297 codethink04-arm64 UNK_CLIENT EE3835718F7A6A71_0002SID rps_unit_test extra issued_subhit=4 -144753/000/0002/R EE3835718F7A61A1 0090/0090 2025-10-21T15:29:09.117560 codethink04-arm64 UNK_CLIENT EE3835718F7A6A71_0002SID rps_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -144753/000/0002/R EE3835718F7A61A1 0091/0091 2025-10-21T15:29:09.117598 codethink04-arm64 UNK_CLIENT EE3835718F7A6A71_0002SID rps_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -144753/000/0002/R EE3835718F7A61A1 0092/0092 2025-10-21T15:29:09.117634 codethink04-arm64 UNK_CLIENT EE3835718F7A6A71_0002SID rps_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -144753/000/0002/R EE3835718F7A61A1 0093/0093 2025-10-21T15:29:09.117663 codethink04-arm64 UNK_CLIENT EE3835718F7A6A71_0002SID rps_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -144753/000/0002/R EE3835718F7A61A1 0094/0094 2025-10-21T15:29:09.117690 codethink04-arm64 UNK_CLIENT EE3835718F7A6A71_0002SID rps_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -144753/000/0002/R EE3835718F7A61A1 0095/0095 2025-10-21T15:29:09.117925 codethink04-arm64 UNK_CLIENT EE3835718F7A6A71_0002SID rps_unit_test extra issued_subhit=5 - -Maximum execution time of 200 second(s) is exceeded - -real 200.20 -user 0.18 -sys 0.10 -Start time : 10/21/2025 15:26:18 -Stop time : 10/21/2025 15:29:38 -Load averages: 2.24 7.00 14.13 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -blasthits_unit_test -====================================================================== - -169523/000/0000/PB EE3896338F7A6E31 0001/0001 2025-10-21T15:29:39.159598 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/blasthits_unit_test -169523/000/0000/PB EE3896338F7A6E31 0002/0002 2025-10-21T15:29:39.159853 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/blasthits_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 25 test cases... -169523/000/0001/RB EE3896338F7A6E31 0003/0003 2025-10-21T15:29:39.162442 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=BlastTargetSequence&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0001/R EE3896338F7A6E31 0004/0004 2025-10-21T15:29:39.400125 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test extra ncbi_phid=EE3896338F7A6E310000000000010001 -169523/000/0001/R EE3896338F7A6E31 0005/0005 2025-10-21T15:29:39.400168 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test extra issued_subhit=1 -169523/000/0001/R EE3896338F7A6E31 0006/0006 2025-10-21T15:29:39.400594 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=2 -169523/000/0001/R EE3896338F7A6E31 0007/0007 2025-10-21T15:29:39.400732 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -169523/000/0001/R EE3896338F7A6E31 0008/0008 2025-10-21T15:29:39.400760 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -169523/000/0001/R EE3896338F7A6E31 0009/0009 2025-10-21T15:29:39.400773 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -169523/000/0001/R EE3896338F7A6E31 0010/0010 2025-10-21T15:29:39.400785 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -169523/000/0001/R EE3896338F7A6E31 0011/0011 2025-10-21T15:29:39.400795 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -169523/000/0001/R EE3896338F7A6E31 0012/0012 2025-10-21T15:29:39.400981 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=3 -169523/000/0001/R EE3896338F7A6E31 0013/0013 2025-10-21T15:29:39.401183 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=4 -169523/000/0001/R EE3896338F7A6E31 0014/0014 2025-10-21T15:29:39.401279 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -169523/000/0001/R EE3896338F7A6E31 0015/0015 2025-10-21T15:29:39.401293 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -169523/000/0001/R EE3896338F7A6E31 0016/0016 2025-10-21T15:29:39.401313 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -169523/000/0001/R EE3896338F7A6E31 0017/0017 2025-10-21T15:29:39.401323 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -169523/000/0001/R EE3896338F7A6E31 0018/0018 2025-10-21T15:29:39.401331 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -169523/000/0001/R EE3896338F7A6E31 0019/0019 2025-10-21T15:29:39.401404 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=5 -169523/000/0001/R EE3896338F7A6E31 0020/0020 2025-10-21T15:29:40.402134 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=6 -169523/000/0001/R EE3896338F7A6E31 0021/0021 2025-10-21T15:29:40.402386 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -169523/000/0001/R EE3896338F7A6E31 0022/0022 2025-10-21T15:29:40.402447 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -169523/000/0001/R EE3896338F7A6E31 0023/0023 2025-10-21T15:29:40.402481 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -169523/000/0001/R EE3896338F7A6E31 0024/0024 2025-10-21T15:29:40.402505 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -169523/000/0001/R EE3896338F7A6E31 0025/0025 2025-10-21T15:29:40.402530 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -169523/000/0001/R EE3896338F7A6E31 0026/0026 2025-10-21T15:29:40.402760 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=7 -169523/000/0001/R EE3896338F7A6E31 0027/0027 2025-10-21T15:29:42.903705 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=8 -169523/000/0001/R EE3896338F7A6E31 0028/0028 2025-10-21T15:29:42.903982 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -169523/000/0001/R EE3896338F7A6E31 0029/0029 2025-10-21T15:29:42.904021 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -169523/000/0001/R EE3896338F7A6E31 0030/0030 2025-10-21T15:29:42.904075 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -169523/000/0001/R EE3896338F7A6E31 0031/0031 2025-10-21T15:29:42.904118 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -169523/000/0001/R EE3896338F7A6E31 0032/0032 2025-10-21T15:29:42.904147 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -169523/000/0001/R EE3896338F7A6E31 0033/0033 2025-10-21T15:29:42.904454 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=9 -169523/000/0001/R EE3896338F7A6E31 0034/0034 2025-10-21T15:29:47.655274 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=10 -169523/000/0001/R EE3896338F7A6E31 0035/0035 2025-10-21T15:29:47.655530 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -169523/000/0001/R EE3896338F7A6E31 0036/0036 2025-10-21T15:29:47.655568 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -169523/000/0001/R EE3896338F7A6E31 0037/0037 2025-10-21T15:29:47.655598 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -169523/000/0001/R EE3896338F7A6E31 0038/0038 2025-10-21T15:29:47.655624 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -169523/000/0001/R EE3896338F7A6E31 0039/0039 2025-10-21T15:29:47.655650 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -169523/000/0001/R EE3896338F7A6E31 0040/0040 2025-10-21T15:29:47.656096 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=11 -169523/000/0001/R EE3896338F7A6E31 0041/0041 2025-10-21T15:29:55.781971 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=12 -169523/000/0001/R EE3896338F7A6E31 0042/0042 2025-10-21T15:29:55.782240 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -169523/000/0001/R EE3896338F7A6E31 0043/0043 2025-10-21T15:29:55.782275 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -169523/000/0001/R EE3896338F7A6E31 0044/0044 2025-10-21T15:29:55.782313 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -169523/000/0001/R EE3896338F7A6E31 0045/0045 2025-10-21T15:29:55.782339 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -169523/000/0001/R EE3896338F7A6E31 0046/0046 2025-10-21T15:29:55.782363 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -169523/000/0001/R EE3896338F7A6E31 0047/0047 2025-10-21T15:29:55.782667 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=13 -169523/000/0001/R EE3896338F7A6E31 0048/0048 2025-10-21T15:30:08.971270 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=14 -169523/000/0001/R EE3896338F7A6E31 0049/0049 2025-10-21T15:30:08.971559 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -169523/000/0001/R EE3896338F7A6E31 0050/0050 2025-10-21T15:30:08.971607 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -169523/000/0001/R EE3896338F7A6E31 0051/0051 2025-10-21T15:30:08.971640 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -169523/000/0001/R EE3896338F7A6E31 0052/0052 2025-10-21T15:30:08.971671 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -169523/000/0001/R EE3896338F7A6E31 0053/0053 2025-10-21T15:30:08.971694 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -169523/000/0001/R EE3896338F7A6E31 0054/0054 2025-10-21T15:30:08.971975 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=15 -169523/000/0001/R EE3896338F7A6E31 0055/0055 2025-10-21T15:30:29.754034 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=16 -169523/000/0001/R EE3896338F7A6E31 0056/0056 2025-10-21T15:30:29.754284 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -169523/000/0001/R EE3896338F7A6E31 0057/0057 2025-10-21T15:30:29.754319 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -169523/000/0001/R EE3896338F7A6E31 0058/0058 2025-10-21T15:30:29.754360 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -169523/000/0001/R EE3896338F7A6E31 0059/0059 2025-10-21T15:30:29.754388 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -169523/000/0001/R EE3896338F7A6E31 0060/0060 2025-10-21T15:30:29.754435 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -169523/000/0001/R EE3896338F7A6E31 0061/0061 2025-10-21T15:30:29.754712 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=17 -169523/000/0001/R EE3896338F7A6E31 0062/0062 2025-10-21T15:30:59.755221 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=18 -169523/000/0001/R EE3896338F7A6E31 0063/0063 2025-10-21T15:30:59.755387 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -169523/000/0001/R EE3896338F7A6E31 0064/0064 2025-10-21T15:30:59.755404 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -169523/000/0001/R EE3896338F7A6E31 0065/0065 2025-10-21T15:30:59.755417 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -169523/000/0001/R EE3896338F7A6E31 0066/0066 2025-10-21T15:30:59.755429 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -169523/000/0001/R EE3896338F7A6E31 0067/0067 2025-10-21T15:30:59.755440 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -169523/000/0001/R EE3896338F7A6E31 0068/0068 2025-10-21T15:30:59.755597 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=19 -169523/000/0001/R EE3896338F7A6E31 0069/0069 2025-10-21T15:31:29.756346 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test extra issued_subhit=20 -169523/000/0001/R EE3896338F7A6E31 0070/0070 2025-10-21T15:31:29.756605 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -169523/000/0001/R EE3896338F7A6E31 0071/0071 2025-10-21T15:31:29.756639 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -169523/000/0001/R EE3896338F7A6E31 0072/0072 2025-10-21T15:31:29.756680 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -169523/000/0001/R EE3896338F7A6E31 0073/0073 2025-10-21T15:31:29.756706 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -169523/000/0001/R EE3896338F7A6E31 0074/0074 2025-10-21T15:31:29.756729 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -169523/000/0001/R EE3896338F7A6E31 0075/0075 2025-10-21T15:31:29.757307 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 -169523/000/0001/R EE3896338F7A6E31 0076/0076 2025-10-21T15:31:29.757334 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: GENBANK(CLoaderException::eConnectionFailed) "reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(emb|CU856286|)) -169523/000/0001/R EE3896338F7A6E31 0077/0077 2025-10-21T15:31:29.757350 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test Error: BLAST "blasthits_unit_test.cpp", line 112: blasthits::BlastTargetSequence_invoker() --- Uncaught exception in "BlastTargetSequence"(CLoaderException::eConnectionFailed) failed to send request: NULL (in GetRecords(emb|CU856286|)) -169523/000/0001/RE EE3896338F7A6E31 0080/0080 2025-10-21T15:31:29.757431 codethink04-arm64 UNK_CLIENT EE3896338F7A6E31_0001SID blasthits_unit_test request-stop 500 110.595021963 0 0 -unknown location(0): fatal error: in "blasthits/BlastTargetSequence": NCBI C++ Exception: - Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 - Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(emb|CU856286|)) - -./c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp(112): last checkpoint: "BlastTargetSequence" entry. -169523/000/0002/RB EE3896338F7A6E31 0081/0081 2025-10-21T15:31:29.758236 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testMergeHSPLists&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0002/RE EE3896338F7A6E31 0082/0082 2025-10-21T15:31:29.758837 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000602960 0 0 -169523/000/0003/RB EE3896338F7A6E31 0083/0083 2025-10-21T15:31:29.759543 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testPurgeOfNewHSPList&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0003/RE EE3896338F7A6E31 0084/0084 2025-10-21T15:31:29.759597 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000062942 0 0 -169523/000/0004/RB EE3896338F7A6E31 0085/0085 2025-10-21T15:31:29.760130 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testPurgeOfEmptyHSPList&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0004/RE EE3896338F7A6E31 0086/0086 2025-10-21T15:31:29.760529 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000395059 0 0 -169523/000/0005/RB EE3896338F7A6E31 0087/0087 2025-10-21T15:31:29.761142 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testPurgeOfFullHSPList&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0005/RE EE3896338F7A6E31 0088/0088 2025-10-21T15:31:29.761195 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000058889 0 0 -169523/000/0006/RB EE3896338F7A6E31 0089/0089 2025-10-21T15:31:29.761709 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testOrderingOfFullHSPList&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0006/RE EE3896338F7A6E31 0090/0090 2025-10-21T15:31:29.761756 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000049829 0 0 -169523/000/0007/RB EE3896338F7A6E31 0091/0091 2025-10-21T15:31:29.762255 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testPurgeOfHSPListWithHoles&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0007/RE EE3896338F7A6E31 0092/0092 2025-10-21T15:31:29.762306 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000054121 0 0 -169523/000/0008/RB EE3896338F7A6E31 0093/0093 2025-10-21T15:31:29.762849 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testHSPInit&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0008/RE EE3896338F7A6E31 0094/0094 2025-10-21T15:31:29.762925 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000081062 0 0 -169523/000/0009/RB EE3896338F7A6E31 0095/0095 2025-10-21T15:31:29.763475 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testHSPInitWithNulls&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0009/RE EE3896338F7A6E31 0096/0096 2025-10-21T15:31:29.763518 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000050067 0 0 -169523/000/0010/RB EE3896338F7A6E31 0097/0097 2025-10-21T15:31:29.764021 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testReevaluateWithAmbiguitiesUngappedNucl&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0010/RE EE3896338F7A6E31 0098/0098 2025-10-21T15:31:29.765652 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.001614093 0 0 -169523/000/0011/RB EE3896338F7A6E31 0099/0099 2025-10-21T15:31:29.766357 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testReevaluateWithAmbiguitiesUngappedTransl&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0011/RE EE3896338F7A6E31 0100/0100 2025-10-21T15:31:29.768661 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.002294063 0 0 -169523/000/0012/RB EE3896338F7A6E31 0101/0101 2025-10-21T15:31:29.769774 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testReevaluateWithAmbiguitiesGapped&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0012/RE EE3896338F7A6E31 0102/0102 2025-10-21T15:31:29.769917 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000155925 0 0 -169523/000/0013/RB EE3896338F7A6E31 0103/0103 2025-10-21T15:31:29.770588 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testReevaluateWithAmbiguitiesBadHit&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0013/RE EE3896338F7A6E31 0104/0104 2025-10-21T15:31:29.770964 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000380039 0 0 -169523/000/0014/RB EE3896338F7A6E31 0105/0105 2025-10-21T15:31:29.771629 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testGetOOFNumIdentities&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0014/RE EE3896338F7A6E31 0106/0106 2025-10-21T15:31:29.771682 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000061035 0 0 -169523/000/0015/RB EE3896338F7A6E31 0107/0107 2025-10-21T15:31:29.772212 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testHSPListSort&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0015/RE EE3896338F7A6E31 0108/0108 2025-10-21T15:31:29.772299 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000089883 0 0 -169523/000/0016/RB EE3896338F7A6E31 0109/0109 2025-10-21T15:31:29.772832 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testHSPListSaveHSP&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0016/RE EE3896338F7A6E31 0110/0110 2025-10-21T15:31:29.773641 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000811100 0 0 -169523/000/0017/RB EE3896338F7A6E31 0111/0111 2025-10-21T15:31:29.774164 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testCheckHSPCommonEndpoints&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0017/RE EE3896338F7A6E31 0112/0112 2025-10-21T15:31:29.774230 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000068902 0 0 -169523/000/0018/RB EE3896338F7A6E31 0113/0113 2025-10-21T15:31:29.774811 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testSBlastHitsParamsGapped&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0018/RE EE3896338F7A6E31 0114/0114 2025-10-21T15:31:29.775265 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000452041 0 0 -169523/000/0019/RB EE3896338F7A6E31 0115/0115 2025-10-21T15:31:29.776213 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testSBlastHitsParamsUngapped&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0019/RE EE3896338F7A6E31 0116/0116 2025-10-21T15:31:29.776275 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000071048 0 0 -169523/000/0020/RB EE3896338F7A6E31 0117/0117 2025-10-21T15:31:29.776840 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testSBlastHitsParamsCompStats&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0020/RE EE3896338F7A6E31 0118/0118 2025-10-21T15:31:29.776890 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000052928 0 0 -169523/000/0021/RB EE3896338F7A6E31 0119/0119 2025-10-21T15:31:29.777425 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testAdjustOddBlastnScores&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0021/RE EE3896338F7A6E31 0120/0120 2025-10-21T15:31:29.777494 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000072002 0 0 -169523/000/0022/RB EE3896338F7A6E31 0121/0121 2025-10-21T15:31:29.778008 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testHitListUpdate&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0022/RE EE3896338F7A6E31 0122/0122 2025-10-21T15:31:29.778057 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000051021 0 0 -169523/000/0023/RB EE3896338F7A6E31 0123/0123 2025-10-21T15:31:29.778675 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testQueryCoverage&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0023/RE EE3896338F7A6E31 0124/0124 2025-10-21T15:31:29.778745 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000075101 0 0 -169523/000/0024/RB EE3896338F7A6E31 0125/0125 2025-10-21T15:31:29.779326 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testMaxHspsPerSubject&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0024/RE EE3896338F7A6E31 0126/0126 2025-10-21T15:31:29.779380 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000060081 0 0 -169523/000/0025/RB EE3896338F7A6E31 0127/0127 2025-10-21T15:31:29.779894 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-start test_name=testSubjectBestHit&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -169523/000/0025/RE EE3896338F7A6E31 0128/0128 2025-10-21T15:31:29.779938 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test request-stop 200 0.000045061 0 0 - -*** 1 failure is detected in the test module "Master Test Suite" -Executed 25 test cases. -169523/000/0000/P EE3896338F7A6E31 0129/0129 2025-10-21T15:31:29.786541 codethink04-arm64 UNK_CLIENT UNK_SESSION blasthits_unit_test stop 201 110.630965948 -real 110.74 -user 0.37 -sys 0.07 -Start time : 10/21/2025 15:29:39 -Stop time : 10/21/2025 15:31:29 -Load averages: 3.53 6.00 12.97 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 201 - - -====================================================================== -linkhsp_unit_test -====================================================================== - -220948/000/0000/PB EE385F148F7A7511 0001/0001 2025-10-21T15:31:29.955796 codethink04-arm64 UNK_CLIENT UNK_SESSION linkhsp_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/linkhsp_unit_test -220948/000/0000/PB EE385F148F7A7511 0002/0002 2025-10-21T15:31:29.956027 codethink04-arm64 UNK_CLIENT UNK_SESSION linkhsp_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/linkhsp_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 15 test cases... -220948/000/0001/RB EE385F148F7A7511 0003/0003 2025-10-21T15:31:29.958444 codethink04-arm64 UNK_CLIENT UNK_SESSION linkhsp_unit_test request-start test_name=testUnevenGapLinkHspsTblastn&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -220948/000/0001/R EE385F148F7A7511 0004/0004 2025-10-21T15:31:29.959258 codethink04-arm64 UNK_CLIENT UNK_SESSION linkhsp_unit_test extra ncbi_phid=EE385F148F7A75110000000000010001 -220948/000/0001/R EE385F148F7A7511 0005/0005 2025-10-21T15:31:29.959295 codethink04-arm64 UNK_CLIENT UNK_SESSION linkhsp_unit_test extra issued_subhit=1 -220948/000/0001/R EE385F148F7A7511 0006/0006 2025-10-21T15:31:29.959853 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=2 -220948/000/0001/R EE385F148F7A7511 0007/0007 2025-10-21T15:31:29.960053 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -220948/000/0001/R EE385F148F7A7511 0008/0008 2025-10-21T15:31:29.960088 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -220948/000/0001/R EE385F148F7A7511 0009/0009 2025-10-21T15:31:29.960106 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -220948/000/0001/R EE385F148F7A7511 0010/0010 2025-10-21T15:31:29.960121 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -220948/000/0001/R EE385F148F7A7511 0011/0011 2025-10-21T15:31:29.960135 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -220948/000/0001/R EE385F148F7A7511 0012/0012 2025-10-21T15:31:29.960363 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=3 -220948/000/0001/R EE385F148F7A7511 0013/0013 2025-10-21T15:31:29.960648 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=4 -220948/000/0001/R EE385F148F7A7511 0014/0014 2025-10-21T15:31:29.960766 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -220948/000/0001/R EE385F148F7A7511 0015/0015 2025-10-21T15:31:29.960786 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -220948/000/0001/R EE385F148F7A7511 0016/0016 2025-10-21T15:31:29.960814 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -220948/000/0001/R EE385F148F7A7511 0017/0017 2025-10-21T15:31:29.960829 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -220948/000/0001/R EE385F148F7A7511 0018/0018 2025-10-21T15:31:29.960841 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -220948/000/0001/R EE385F148F7A7511 0019/0019 2025-10-21T15:31:29.960938 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=5 -220948/000/0001/R EE385F148F7A7511 0020/0020 2025-10-21T15:31:30.961662 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=6 -220948/000/0001/R EE385F148F7A7511 0021/0021 2025-10-21T15:31:30.961899 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -220948/000/0001/R EE385F148F7A7511 0022/0022 2025-10-21T15:31:30.961937 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -220948/000/0001/R EE385F148F7A7511 0023/0023 2025-10-21T15:31:30.961969 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -220948/000/0001/R EE385F148F7A7511 0024/0024 2025-10-21T15:31:30.961994 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -220948/000/0001/R EE385F148F7A7511 0025/0025 2025-10-21T15:31:30.962017 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -220948/000/0001/R EE385F148F7A7511 0026/0026 2025-10-21T15:31:30.962231 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=7 -220948/000/0001/R EE385F148F7A7511 0027/0027 2025-10-21T15:31:33.462734 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=8 -220948/000/0001/R EE385F148F7A7511 0028/0028 2025-10-21T15:31:33.462897 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -220948/000/0001/R EE385F148F7A7511 0029/0029 2025-10-21T15:31:33.462918 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -220948/000/0001/R EE385F148F7A7511 0030/0030 2025-10-21T15:31:33.462943 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -220948/000/0001/R EE385F148F7A7511 0031/0031 2025-10-21T15:31:33.462957 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -220948/000/0001/R EE385F148F7A7511 0032/0032 2025-10-21T15:31:33.462971 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -220948/000/0001/R EE385F148F7A7511 0033/0033 2025-10-21T15:31:33.463111 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=9 -220948/000/0001/R EE385F148F7A7511 0034/0034 2025-10-21T15:31:38.213885 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=10 -220948/000/0001/R EE385F148F7A7511 0035/0035 2025-10-21T15:31:38.214138 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -220948/000/0001/R EE385F148F7A7511 0036/0036 2025-10-21T15:31:38.214176 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -220948/000/0001/R EE385F148F7A7511 0037/0037 2025-10-21T15:31:38.214208 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -220948/000/0001/R EE385F148F7A7511 0038/0038 2025-10-21T15:31:38.214233 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -220948/000/0001/R EE385F148F7A7511 0039/0039 2025-10-21T15:31:38.214256 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -220948/000/0001/R EE385F148F7A7511 0040/0040 2025-10-21T15:31:38.216047 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=11 -220948/000/0001/R EE385F148F7A7511 0041/0041 2025-10-21T15:31:46.341840 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=12 -220948/000/0001/R EE385F148F7A7511 0042/0042 2025-10-21T15:31:46.342096 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -220948/000/0001/R EE385F148F7A7511 0043/0043 2025-10-21T15:31:46.342133 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -220948/000/0001/R EE385F148F7A7511 0044/0044 2025-10-21T15:31:46.342175 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -220948/000/0001/R EE385F148F7A7511 0045/0045 2025-10-21T15:31:46.342203 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -220948/000/0001/R EE385F148F7A7511 0046/0046 2025-10-21T15:31:46.342228 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -220948/000/0001/R EE385F148F7A7511 0047/0047 2025-10-21T15:31:46.342494 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=13 -220948/000/0001/R EE385F148F7A7511 0048/0048 2025-10-21T15:31:59.530464 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=14 -220948/000/0001/R EE385F148F7A7511 0049/0049 2025-10-21T15:31:59.530642 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -220948/000/0001/R EE385F148F7A7511 0050/0050 2025-10-21T15:31:59.530663 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -220948/000/0001/R EE385F148F7A7511 0051/0051 2025-10-21T15:31:59.530677 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -220948/000/0001/R EE385F148F7A7511 0052/0052 2025-10-21T15:31:59.530688 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -220948/000/0001/R EE385F148F7A7511 0053/0053 2025-10-21T15:31:59.530700 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -220948/000/0001/R EE385F148F7A7511 0054/0054 2025-10-21T15:31:59.530842 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=15 -220948/000/0001/R EE385F148F7A7511 0055/0055 2025-10-21T15:32:20.321057 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=16 -220948/000/0001/R EE385F148F7A7511 0056/0056 2025-10-21T15:32:20.321319 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -220948/000/0001/R EE385F148F7A7511 0057/0057 2025-10-21T15:32:20.321356 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -220948/000/0001/R EE385F148F7A7511 0058/0058 2025-10-21T15:32:20.321403 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -220948/000/0001/R EE385F148F7A7511 0059/0059 2025-10-21T15:32:20.321431 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -220948/000/0001/R EE385F148F7A7511 0060/0060 2025-10-21T15:32:20.321454 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -220948/000/0001/R EE385F148F7A7511 0061/0061 2025-10-21T15:32:20.321715 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=17 -220948/000/0001/R EE385F148F7A7511 0062/0062 2025-10-21T15:32:50.322542 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=18 -220948/000/0001/R EE385F148F7A7511 0063/0063 2025-10-21T15:32:50.322827 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -220948/000/0001/R EE385F148F7A7511 0064/0064 2025-10-21T15:32:50.322867 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -220948/000/0001/R EE385F148F7A7511 0065/0065 2025-10-21T15:32:50.322906 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -220948/000/0001/R EE385F148F7A7511 0066/0066 2025-10-21T15:32:50.322936 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -220948/000/0001/R EE385F148F7A7511 0067/0067 2025-10-21T15:32:50.322961 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -220948/000/0001/R EE385F148F7A7511 0068/0068 2025-10-21T15:32:50.323252 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=19 -220948/000/0001/R EE385F148F7A7511 0069/0069 2025-10-21T15:33:20.324151 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test extra issued_subhit=20 -220948/000/0001/R EE385F148F7A7511 0070/0070 2025-10-21T15:33:20.324410 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -220948/000/0001/R EE385F148F7A7511 0071/0071 2025-10-21T15:33:20.324457 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -220948/000/0001/R EE385F148F7A7511 0072/0072 2025-10-21T15:33:20.324503 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -220948/000/0001/R EE385F148F7A7511 0073/0073 2025-10-21T15:33:20.324535 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -220948/000/0001/R EE385F148F7A7511 0074/0074 2025-10-21T15:33:20.324558 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -220948/000/0001/R EE385F148F7A7511 0075/0075 2025-10-21T15:33:20.325103 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 -220948/000/0001/R EE385F148F7A7511 0076/0076 2025-10-21T15:33:20.325130 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: GENBANK(CLoaderException::eConnectionFailed) "reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|9930103)) -220948/000/0001/R EE385F148F7A7511 0077/0077 2025-10-21T15:33:20.325147 codethink04-arm64 UNK_CLIENT EE385F148F7A7511_0001SID linkhsp_unit_test Error: BLAST "linkhsp_unit_test.cpp", line 535: linkhsp::testUnevenGapLinkHspsTblastn_invoker() --- Uncaught exception in "testUnevenGapLinkHspsTblastn"(CLoaderException::eConnectionFailed) failed to send request: NULL (in GetRecords(gi|9930103)) -real 110.46 -user 0.13 -sys 0.09 -Start time : 10/21/2025 15:31:29 -Stop time : 10/21/2025 15:33:20 -Load averages: 4.56 5.80 12.12 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 139 - - -====================================================================== -blastengine_unit_test -====================================================================== - -235083/000/0000/PB EE38964B8F7A7C01 0001/0001 2025-10-21T15:33:20.503870 codethink04-arm64 UNK_CLIENT UNK_SESSION blastengine_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/blastengine_unit_test -235083/000/0000/PB EE38964B8F7A7C01 0002/0002 2025-10-21T15:33:20.504107 codethink04-arm64 UNK_CLIENT UNK_SESSION blastengine_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/blastengine_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 6 test cases... -235083/000/0001/RB EE38964B8F7A7C01 0003/0003 2025-10-21T15:33:20.507091 codethink04-arm64 UNK_CLIENT UNK_SESSION blastengine_unit_test request-start test_name=testTBLASTNLongMatchBlastEngine&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -235083/000/0001/R EE38964B8F7A7C01 0004/0004 2025-10-21T15:33:20.509800 codethink04-arm64 UNK_CLIENT UNK_SESSION blastengine_unit_test extra ncbi_phid=EE38964B8F7A7C010000000000010001 -235083/000/0001/R EE38964B8F7A7C01 0005/0005 2025-10-21T15:33:20.509859 codethink04-arm64 UNK_CLIENT UNK_SESSION blastengine_unit_test extra issued_subhit=1 -235083/000/0001/R EE38964B8F7A7C01 0006/0006 2025-10-21T15:33:20.510511 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=2 -235083/000/0001/R EE38964B8F7A7C01 0007/0007 2025-10-21T15:33:20.510698 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -235083/000/0001/R EE38964B8F7A7C01 0008/0008 2025-10-21T15:33:20.510732 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -235083/000/0001/R EE38964B8F7A7C01 0009/0009 2025-10-21T15:33:20.510754 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -235083/000/0001/R EE38964B8F7A7C01 0010/0010 2025-10-21T15:33:20.510769 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -235083/000/0001/R EE38964B8F7A7C01 0011/0011 2025-10-21T15:33:20.510784 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -235083/000/0001/R EE38964B8F7A7C01 0012/0012 2025-10-21T15:33:20.511028 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=3 -235083/000/0001/R EE38964B8F7A7C01 0013/0013 2025-10-21T15:33:20.511357 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=4 -235083/000/0001/R EE38964B8F7A7C01 0014/0014 2025-10-21T15:33:20.511481 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -235083/000/0001/R EE38964B8F7A7C01 0015/0015 2025-10-21T15:33:20.511499 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -235083/000/0001/R EE38964B8F7A7C01 0016/0016 2025-10-21T15:33:20.511522 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -235083/000/0001/R EE38964B8F7A7C01 0017/0017 2025-10-21T15:33:20.511535 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -235083/000/0001/R EE38964B8F7A7C01 0018/0018 2025-10-21T15:33:20.511549 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -235083/000/0001/R EE38964B8F7A7C01 0019/0019 2025-10-21T15:33:20.511663 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=5 -235083/000/0001/R EE38964B8F7A7C01 0020/0020 2025-10-21T15:33:21.512425 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=6 -235083/000/0001/R EE38964B8F7A7C01 0021/0021 2025-10-21T15:33:21.512661 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -235083/000/0001/R EE38964B8F7A7C01 0022/0022 2025-10-21T15:33:21.512696 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -235083/000/0001/R EE38964B8F7A7C01 0023/0023 2025-10-21T15:33:21.512721 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -235083/000/0001/R EE38964B8F7A7C01 0024/0024 2025-10-21T15:33:21.512745 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -235083/000/0001/R EE38964B8F7A7C01 0025/0025 2025-10-21T15:33:21.512768 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -235083/000/0001/R EE38964B8F7A7C01 0026/0026 2025-10-21T15:33:21.513002 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=7 -235083/000/0001/R EE38964B8F7A7C01 0027/0027 2025-10-21T15:33:24.013795 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=8 -235083/000/0001/R EE38964B8F7A7C01 0028/0028 2025-10-21T15:33:24.014031 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -235083/000/0001/R EE38964B8F7A7C01 0029/0029 2025-10-21T15:33:24.014066 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -235083/000/0001/R EE38964B8F7A7C01 0030/0030 2025-10-21T15:33:24.014115 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -235083/000/0001/R EE38964B8F7A7C01 0031/0031 2025-10-21T15:33:24.014139 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -235083/000/0001/R EE38964B8F7A7C01 0032/0032 2025-10-21T15:33:24.014161 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -235083/000/0001/R EE38964B8F7A7C01 0033/0033 2025-10-21T15:33:24.014429 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=9 -235083/000/0001/R EE38964B8F7A7C01 0034/0034 2025-10-21T15:33:28.765162 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=10 -235083/000/0001/R EE38964B8F7A7C01 0035/0035 2025-10-21T15:33:28.765405 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -235083/000/0001/R EE38964B8F7A7C01 0036/0036 2025-10-21T15:33:28.765438 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -235083/000/0001/R EE38964B8F7A7C01 0037/0037 2025-10-21T15:33:28.765466 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -235083/000/0001/R EE38964B8F7A7C01 0038/0038 2025-10-21T15:33:28.765490 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -235083/000/0001/R EE38964B8F7A7C01 0039/0039 2025-10-21T15:33:28.765511 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -235083/000/0001/R EE38964B8F7A7C01 0042/0042 2025-10-21T15:33:28.766089 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=11 -235083/000/0001/R EE38964B8F7A7C01 0043/0043 2025-10-21T15:33:36.891874 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=12 -235083/000/0001/R EE38964B8F7A7C01 0044/0044 2025-10-21T15:33:36.892129 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -235083/000/0001/R EE38964B8F7A7C01 0045/0045 2025-10-21T15:33:36.892164 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -235083/000/0001/R EE38964B8F7A7C01 0046/0046 2025-10-21T15:33:36.892204 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -235083/000/0001/R EE38964B8F7A7C01 0047/0047 2025-10-21T15:33:36.892230 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -235083/000/0001/R EE38964B8F7A7C01 0048/0048 2025-10-21T15:33:36.892253 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -235083/000/0001/R EE38964B8F7A7C01 0049/0049 2025-10-21T15:33:36.892490 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=13 -235083/000/0001/R EE38964B8F7A7C01 0050/0050 2025-10-21T15:33:50.080741 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=14 -235083/000/0001/R EE38964B8F7A7C01 0051/0051 2025-10-21T15:33:50.081004 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -235083/000/0001/R EE38964B8F7A7C01 0052/0052 2025-10-21T15:33:50.081039 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -235083/000/0001/R EE38964B8F7A7C01 0053/0053 2025-10-21T15:33:50.081070 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -235083/000/0001/R EE38964B8F7A7C01 0054/0054 2025-10-21T15:33:50.081095 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -235083/000/0001/R EE38964B8F7A7C01 0055/0055 2025-10-21T15:33:50.081120 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -235083/000/0001/R EE38964B8F7A7C01 0056/0056 2025-10-21T15:33:50.081360 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=15 -235083/000/0001/R EE38964B8F7A7C01 0057/0057 2025-10-21T15:34:10.863390 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=16 -235083/000/0001/R EE38964B8F7A7C01 0058/0058 2025-10-21T15:34:10.863640 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -235083/000/0001/R EE38964B8F7A7C01 0059/0059 2025-10-21T15:34:10.863675 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -235083/000/0001/R EE38964B8F7A7C01 0060/0060 2025-10-21T15:34:10.863712 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -235083/000/0001/R EE38964B8F7A7C01 0061/0061 2025-10-21T15:34:10.863740 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -235083/000/0001/R EE38964B8F7A7C01 0062/0062 2025-10-21T15:34:10.863763 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -235083/000/0001/R EE38964B8F7A7C01 0063/0063 2025-10-21T15:34:10.863997 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=17 -235083/000/0001/R EE38964B8F7A7C01 0064/0064 2025-10-21T15:34:40.864814 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=18 -235083/000/0001/R EE38964B8F7A7C01 0065/0065 2025-10-21T15:34:40.865074 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -235083/000/0001/R EE38964B8F7A7C01 0066/0066 2025-10-21T15:34:40.865111 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -235083/000/0001/R EE38964B8F7A7C01 0067/0067 2025-10-21T15:34:40.865138 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -235083/000/0001/R EE38964B8F7A7C01 0068/0068 2025-10-21T15:34:40.865162 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -235083/000/0001/R EE38964B8F7A7C01 0069/0069 2025-10-21T15:34:40.865183 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -235083/000/0001/R EE38964B8F7A7C01 0070/0070 2025-10-21T15:34:40.865415 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=19 -235083/000/0001/R EE38964B8F7A7C01 0071/0071 2025-10-21T15:35:10.866185 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test extra issued_subhit=20 -235083/000/0001/R EE38964B8F7A7C01 0072/0072 2025-10-21T15:35:10.866460 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -235083/000/0001/R EE38964B8F7A7C01 0073/0073 2025-10-21T15:35:10.866494 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -235083/000/0001/R EE38964B8F7A7C01 0074/0074 2025-10-21T15:35:10.866531 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -235083/000/0001/R EE38964B8F7A7C01 0075/0075 2025-10-21T15:35:10.866556 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -235083/000/0001/R EE38964B8F7A7C01 0076/0076 2025-10-21T15:35:10.866579 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -235083/000/0001/R EE38964B8F7A7C01 0077/0077 2025-10-21T15:35:10.868088 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 -235083/000/0001/R EE38964B8F7A7C01 0078/0078 2025-10-21T15:35:10.868125 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: GENBANK(CLoaderException::eConnectionFailed) "reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|9790067)) -235083/000/0001/R EE38964B8F7A7C01 0079/0079 2025-10-21T15:35:10.868408 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test Error: BLAST "blastengine_unit_test.cpp", line 148: blastengine::testTBLASTNLongMatchBlastEngine_invoker() --- Uncaught exception in "testTBLASTNLongMatchBlastEngine"(CLoaderException::eConnectionFailed) failed to send request: NULL (in GetRecords(gi|9790067)) -235083/000/0001/RE EE38964B8F7A7C01 0082/0082 2025-10-21T15:35:10.868559 codethink04-arm64 UNK_CLIENT EE38964B8F7A7C01_0001SID blastengine_unit_test request-stop 500 110.361475944 0 0 -unknown location(0): fatal error: in "blastengine/testTBLASTNLongMatchBlastEngine": NCBI C++ Exception: - Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 - Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|9790067)) - -./c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp(148): last checkpoint: "testTBLASTNLongMatchBlastEngine" entry. -235083/000/0002/RB EE38964B8F7A7C01 0083/0083 2025-10-21T15:35:10.869328 codethink04-arm64 UNK_CLIENT UNK_SESSION blastengine_unit_test request-start test_name=testTBLASTNShortMatchBlastEngine&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -235083/000/0002/R EE38964B8F7A7C01 0084/0084 2025-10-21T15:35:10.869518 codethink04-arm64 UNK_CLIENT UNK_SESSION blastengine_unit_test extra ncbi_phid=EE38964B8F7A7C010000000000020002 -235083/000/0002/R EE38964B8F7A7C01 0085/0085 2025-10-21T15:35:10.869543 codethink04-arm64 UNK_CLIENT UNK_SESSION blastengine_unit_test extra issued_subhit=1 -235083/000/0002/R EE38964B8F7A7C01 0086/0086 2025-10-21T15:35:40.870289 codethink04-arm64 UNK_CLIENT EE38964B8F7A84C1_0002SID blastengine_unit_test extra issued_subhit=2 -235083/000/0002/R EE38964B8F7A7C01 0087/0087 2025-10-21T15:35:40.870572 codethink04-arm64 UNK_CLIENT EE38964B8F7A84C1_0002SID blastengine_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -235083/000/0002/R EE38964B8F7A7C01 0088/0088 2025-10-21T15:35:40.870605 codethink04-arm64 UNK_CLIENT EE38964B8F7A84C1_0002SID blastengine_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -235083/000/0002/R EE38964B8F7A7C01 0089/0089 2025-10-21T15:35:40.870631 codethink04-arm64 UNK_CLIENT EE38964B8F7A84C1_0002SID blastengine_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -235083/000/0002/R EE38964B8F7A7C01 0090/0090 2025-10-21T15:35:40.870654 codethink04-arm64 UNK_CLIENT EE38964B8F7A84C1_0002SID blastengine_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -235083/000/0002/R EE38964B8F7A7C01 0091/0091 2025-10-21T15:35:40.870678 codethink04-arm64 UNK_CLIENT EE38964B8F7A84C1_0002SID blastengine_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -235083/000/0002/R EE38964B8F7A7C01 0092/0092 2025-10-21T15:35:40.870901 codethink04-arm64 UNK_CLIENT EE38964B8F7A84C1_0002SID blastengine_unit_test extra issued_subhit=3 -235083/000/0002/R EE38964B8F7A7C01 0093/0093 2025-10-21T15:36:10.871701 codethink04-arm64 UNK_CLIENT EE38964B8F7A84C1_0002SID blastengine_unit_test extra issued_subhit=4 -235083/000/0002/R EE38964B8F7A7C01 0094/0094 2025-10-21T15:36:10.871962 codethink04-arm64 UNK_CLIENT EE38964B8F7A84C1_0002SID blastengine_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -235083/000/0002/R EE38964B8F7A7C01 0095/0095 2025-10-21T15:36:10.871995 codethink04-arm64 UNK_CLIENT EE38964B8F7A84C1_0002SID blastengine_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -235083/000/0002/R EE38964B8F7A7C01 0096/0096 2025-10-21T15:36:10.872021 codethink04-arm64 UNK_CLIENT EE38964B8F7A84C1_0002SID blastengine_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -235083/000/0002/R EE38964B8F7A7C01 0097/0097 2025-10-21T15:36:10.872045 codethink04-arm64 UNK_CLIENT EE38964B8F7A84C1_0002SID blastengine_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -235083/000/0002/R EE38964B8F7A7C01 0098/0098 2025-10-21T15:36:10.872067 codethink04-arm64 UNK_CLIENT EE38964B8F7A84C1_0002SID blastengine_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -235083/000/0002/R EE38964B8F7A7C01 0099/0099 2025-10-21T15:36:10.872305 codethink04-arm64 UNK_CLIENT EE38964B8F7A84C1_0002SID blastengine_unit_test extra issued_subhit=5 - -Maximum execution time of 200 second(s) is exceeded - -real 200.17 -user 0.19 -sys 0.08 -Start time : 10/21/2025 15:33:20 -Stop time : 10/21/2025 15:36:40 -Load averages: 0.92 3.20 9.85 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -ntscan_unit_test -====================================================================== - -239323/000/0000/PB EE38A6DB8F7A8891 0001/0001 2025-10-21T15:36:41.036790 codethink04-arm64 UNK_CLIENT UNK_SESSION ntscan_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/ntscan_unit_test -239323/000/0000/PB EE38A6DB8F7A8891 0002/0002 2025-10-21T15:36:41.036973 codethink04-arm64 UNK_CLIENT UNK_SESSION ntscan_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/ntscan_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 45 test cases... -239323/000/0001/RB EE38A6DB8F7A8891 0003/0003 2025-10-21T15:36:41.038836 codethink04-arm64 UNK_CLIENT UNK_SESSION ntscan_unit_test request-start test_name=DiscontigTwoSubjects&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -239323/000/0001/R EE38A6DB8F7A8891 0004/0004 2025-10-21T15:36:41.039516 codethink04-arm64 UNK_CLIENT UNK_SESSION ntscan_unit_test extra ncbi_phid=EE38A6DB8F7A88910000000000010001 -239323/000/0001/R EE38A6DB8F7A8891 0005/0005 2025-10-21T15:36:41.039546 codethink04-arm64 UNK_CLIENT UNK_SESSION ntscan_unit_test extra issued_subhit=1 -239323/000/0001/R EE38A6DB8F7A8891 0006/0006 2025-10-21T15:36:41.039989 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=2 -239323/000/0001/R EE38A6DB8F7A8891 0007/0007 2025-10-21T15:36:41.040124 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -239323/000/0001/R EE38A6DB8F7A8891 0008/0008 2025-10-21T15:36:41.040151 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0009/0009 2025-10-21T15:36:41.040163 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -239323/000/0001/R EE38A6DB8F7A8891 0010/0010 2025-10-21T15:36:41.040173 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -239323/000/0001/R EE38A6DB8F7A8891 0011/0011 2025-10-21T15:36:41.040184 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0012/0012 2025-10-21T15:36:41.040370 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=3 -239323/000/0001/R EE38A6DB8F7A8891 0013/0013 2025-10-21T15:36:41.040591 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=4 -239323/000/0001/R EE38A6DB8F7A8891 0014/0014 2025-10-21T15:36:41.040682 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -239323/000/0001/R EE38A6DB8F7A8891 0015/0015 2025-10-21T15:36:41.040697 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0016/0016 2025-10-21T15:36:41.040713 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -239323/000/0001/R EE38A6DB8F7A8891 0017/0017 2025-10-21T15:36:41.040723 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -239323/000/0001/R EE38A6DB8F7A8891 0018/0018 2025-10-21T15:36:41.040732 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0019/0019 2025-10-21T15:36:41.040805 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=5 -239323/000/0001/R EE38A6DB8F7A8891 0020/0020 2025-10-21T15:36:42.041600 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=6 -239323/000/0001/R EE38A6DB8F7A8891 0021/0021 2025-10-21T15:36:42.041854 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -239323/000/0001/R EE38A6DB8F7A8891 0022/0022 2025-10-21T15:36:42.041890 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0023/0023 2025-10-21T15:36:42.041920 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -239323/000/0001/R EE38A6DB8F7A8891 0024/0024 2025-10-21T15:36:42.041946 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -239323/000/0001/R EE38A6DB8F7A8891 0025/0025 2025-10-21T15:36:42.041970 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0026/0026 2025-10-21T15:36:42.042192 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=7 -239323/000/0001/R EE38A6DB8F7A8891 0027/0027 2025-10-21T15:36:44.543035 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=8 -239323/000/0001/R EE38A6DB8F7A8891 0028/0028 2025-10-21T15:36:44.543345 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -239323/000/0001/R EE38A6DB8F7A8891 0029/0029 2025-10-21T15:36:44.543382 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0030/0030 2025-10-21T15:36:44.543419 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -239323/000/0001/R EE38A6DB8F7A8891 0031/0031 2025-10-21T15:36:44.543446 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -239323/000/0001/R EE38A6DB8F7A8891 0032/0032 2025-10-21T15:36:44.543472 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0033/0033 2025-10-21T15:36:44.543699 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=9 -239323/000/0001/R EE38A6DB8F7A8891 0034/0034 2025-10-21T15:36:49.294525 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=10 -239323/000/0001/R EE38A6DB8F7A8891 0035/0035 2025-10-21T15:36:49.294774 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -239323/000/0001/R EE38A6DB8F7A8891 0036/0036 2025-10-21T15:36:49.294809 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0037/0037 2025-10-21T15:36:49.294838 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -239323/000/0001/R EE38A6DB8F7A8891 0038/0038 2025-10-21T15:36:49.294864 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -239323/000/0001/R EE38A6DB8F7A8891 0039/0039 2025-10-21T15:36:49.294888 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0040/0040 2025-10-21T15:36:49.295374 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=11 -239323/000/0001/R EE38A6DB8F7A8891 0041/0041 2025-10-21T15:36:57.421202 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=12 -239323/000/0001/R EE38A6DB8F7A8891 0042/0042 2025-10-21T15:36:57.421452 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -239323/000/0001/R EE38A6DB8F7A8891 0043/0043 2025-10-21T15:36:57.421486 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0044/0044 2025-10-21T15:36:57.421524 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -239323/000/0001/R EE38A6DB8F7A8891 0045/0045 2025-10-21T15:36:57.421549 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -239323/000/0001/R EE38A6DB8F7A8891 0046/0046 2025-10-21T15:36:57.421573 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0047/0047 2025-10-21T15:36:57.421813 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=13 -239323/000/0001/R EE38A6DB8F7A8891 0048/0048 2025-10-21T15:37:10.610146 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=14 -239323/000/0001/R EE38A6DB8F7A8891 0049/0049 2025-10-21T15:37:10.610425 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -239323/000/0001/R EE38A6DB8F7A8891 0050/0050 2025-10-21T15:37:10.610465 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0051/0051 2025-10-21T15:37:10.610498 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -239323/000/0001/R EE38A6DB8F7A8891 0052/0052 2025-10-21T15:37:10.610523 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -239323/000/0001/R EE38A6DB8F7A8891 0053/0053 2025-10-21T15:37:10.610546 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0054/0054 2025-10-21T15:37:10.610785 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=15 -239323/000/0001/R EE38A6DB8F7A8891 0055/0055 2025-10-21T15:37:31.392821 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=16 -239323/000/0001/R EE38A6DB8F7A8891 0056/0056 2025-10-21T15:37:31.393061 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -239323/000/0001/R EE38A6DB8F7A8891 0057/0057 2025-10-21T15:37:31.393096 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0058/0058 2025-10-21T15:37:31.393136 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -239323/000/0001/R EE38A6DB8F7A8891 0059/0059 2025-10-21T15:37:31.393160 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -239323/000/0001/R EE38A6DB8F7A8891 0060/0060 2025-10-21T15:37:31.393183 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0061/0061 2025-10-21T15:37:31.393424 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=17 -239323/000/0001/R EE38A6DB8F7A8891 0062/0062 2025-10-21T15:38:01.394266 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=18 -239323/000/0001/R EE38A6DB8F7A8891 0063/0063 2025-10-21T15:38:01.394525 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -239323/000/0001/R EE38A6DB8F7A8891 0064/0064 2025-10-21T15:38:01.394560 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0065/0065 2025-10-21T15:38:01.394589 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -239323/000/0001/R EE38A6DB8F7A8891 0066/0066 2025-10-21T15:38:01.394614 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -239323/000/0001/R EE38A6DB8F7A8891 0067/0067 2025-10-21T15:38:01.394637 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0068/0068 2025-10-21T15:38:01.394873 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=19 -239323/000/0001/R EE38A6DB8F7A8891 0069/0069 2025-10-21T15:38:31.395794 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test extra issued_subhit=20 -239323/000/0001/R EE38A6DB8F7A8891 0070/0070 2025-10-21T15:38:31.396042 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -239323/000/0001/R EE38A6DB8F7A8891 0071/0071 2025-10-21T15:38:31.396076 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0072/0072 2025-10-21T15:38:31.396114 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -239323/000/0001/R EE38A6DB8F7A8891 0073/0073 2025-10-21T15:38:31.396141 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -239323/000/0001/R EE38A6DB8F7A8891 0074/0074 2025-10-21T15:38:31.396163 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -239323/000/0001/R EE38A6DB8F7A8891 0075/0075 2025-10-21T15:38:31.396648 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 -239323/000/0001/R EE38A6DB8F7A8891 0076/0076 2025-10-21T15:38:31.396675 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: GENBANK(CLoaderException::eConnectionFailed) "reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|555)) -239323/000/0001/R EE38A6DB8F7A8891 0077/0077 2025-10-21T15:38:31.396694 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test Error: BLAST "ntscan_unit_test.cpp", line 797: ntscan::DiscontigTwoSubjects_invoker() --- Uncaught exception in "DiscontigTwoSubjects"(CLoaderException::eConnectionFailed) failed to send request: NULL (in GetRecords(gi|555)) -239323/000/0001/RE EE38A6DB8F7A8891 0080/0080 2025-10-21T15:38:31.396791 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A8891_0001SID ntscan_unit_test request-stop 500 110.357961177 0 0 -unknown location(0): fatal error: in "ntscan/DiscontigTwoSubjects": NCBI C++ Exception: - Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 - Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|555)) - -./c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp(797): last checkpoint: "DiscontigTwoSubjects" entry. -239323/000/0002/RB EE38A6DB8F7A8891 0081/0081 2025-10-21T15:38:31.397560 codethink04-arm64 UNK_CLIENT UNK_SESSION ntscan_unit_test request-start test_name=TinyScanOffsetSize4&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -239323/000/0002/R EE38A6DB8F7A8891 0082/0082 2025-10-21T15:38:31.397680 codethink04-arm64 UNK_CLIENT UNK_SESSION ntscan_unit_test extra ncbi_phid=EE38A6DB8F7A88910000000000020002 -239323/000/0002/R EE38A6DB8F7A8891 0083/0083 2025-10-21T15:38:31.397709 codethink04-arm64 UNK_CLIENT UNK_SESSION ntscan_unit_test extra issued_subhit=1 -239323/000/0002/R EE38A6DB8F7A8891 0084/0084 2025-10-21T15:39:01.398577 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A9151_0002SID ntscan_unit_test extra issued_subhit=2 -239323/000/0002/R EE38A6DB8F7A8891 0085/0085 2025-10-21T15:39:01.398821 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A9151_0002SID ntscan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -239323/000/0002/R EE38A6DB8F7A8891 0086/0086 2025-10-21T15:39:01.398855 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A9151_0002SID ntscan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -239323/000/0002/R EE38A6DB8F7A8891 0087/0087 2025-10-21T15:39:01.398896 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A9151_0002SID ntscan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -239323/000/0002/R EE38A6DB8F7A8891 0088/0088 2025-10-21T15:39:01.398921 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A9151_0002SID ntscan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -239323/000/0002/R EE38A6DB8F7A8891 0089/0089 2025-10-21T15:39:01.398944 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A9151_0002SID ntscan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -239323/000/0002/R EE38A6DB8F7A8891 0090/0090 2025-10-21T15:39:01.399162 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A9151_0002SID ntscan_unit_test extra issued_subhit=3 -239323/000/0002/R EE38A6DB8F7A8891 0091/0091 2025-10-21T15:39:31.400076 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A9151_0002SID ntscan_unit_test extra issued_subhit=4 -239323/000/0002/R EE38A6DB8F7A8891 0092/0092 2025-10-21T15:39:31.400316 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A9151_0002SID ntscan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -239323/000/0002/R EE38A6DB8F7A8891 0093/0093 2025-10-21T15:39:31.400349 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A9151_0002SID ntscan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -239323/000/0002/R EE38A6DB8F7A8891 0094/0094 2025-10-21T15:39:31.400379 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A9151_0002SID ntscan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -239323/000/0002/R EE38A6DB8F7A8891 0095/0095 2025-10-21T15:39:31.400404 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A9151_0002SID ntscan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -239323/000/0002/R EE38A6DB8F7A8891 0096/0096 2025-10-21T15:39:31.400427 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A9151_0002SID ntscan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -239323/000/0002/R EE38A6DB8F7A8891 0097/0097 2025-10-21T15:39:31.400645 codethink04-arm64 UNK_CLIENT EE38A6DB8F7A9151_0002SID ntscan_unit_test extra issued_subhit=5 - -Maximum execution time of 200 second(s) is exceeded - -real 200.17 -user 0.15 -sys 0.08 -Start time : 10/21/2025 15:36:40 -Stop time : 10/21/2025 15:40:01 -Load averages: 0.17 1.83 8.03 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -aascan_unit_test -====================================================================== - -248236/000/0000/PB EE38C9AC8F7A9511 0001/0001 2025-10-21T15:40:01.329402 codethink04-arm64 UNK_CLIENT UNK_SESSION aascan_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test -248236/000/0000/PB EE38C9AC8F7A9511 0002/0002 2025-10-21T15:40:01.329643 codethink04-arm64 UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 7 test cases... -248236/000/0001/RB EE38C9AC8F7A9511 0003/0003 2025-10-21T15:40:01.332215 codethink04-arm64 UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanOffsetTest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -248236/000/0001/R EE38C9AC8F7A9511 0004/0004 2025-10-21T15:40:01.332958 codethink04-arm64 UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_phid=EE38C9AC8F7A95110000000000010001 -248236/000/0001/R EE38C9AC8F7A9511 0005/0005 2025-10-21T15:40:01.332990 codethink04-arm64 UNK_CLIENT UNK_SESSION aascan_unit_test extra issued_subhit=1 -248236/000/0001/R EE38C9AC8F7A9511 0006/0006 2025-10-21T15:40:01.333524 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=2 -248236/000/0001/R EE38C9AC8F7A9511 0007/0007 2025-10-21T15:40:01.333682 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -248236/000/0001/R EE38C9AC8F7A9511 0008/0008 2025-10-21T15:40:01.333712 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0009/0009 2025-10-21T15:40:01.333729 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -248236/000/0001/R EE38C9AC8F7A9511 0010/0010 2025-10-21T15:40:01.333743 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -248236/000/0001/R EE38C9AC8F7A9511 0011/0011 2025-10-21T15:40:01.333757 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0012/0012 2025-10-21T15:40:01.333970 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=3 -248236/000/0001/R EE38C9AC8F7A9511 0013/0013 2025-10-21T15:40:01.334235 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=4 -248236/000/0001/R EE38C9AC8F7A9511 0014/0014 2025-10-21T15:40:01.334336 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -248236/000/0001/R EE38C9AC8F7A9511 0015/0015 2025-10-21T15:40:01.334353 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0016/0016 2025-10-21T15:40:01.334674 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -248236/000/0001/R EE38C9AC8F7A9511 0017/0017 2025-10-21T15:40:01.334692 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -248236/000/0001/R EE38C9AC8F7A9511 0018/0018 2025-10-21T15:40:01.334704 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0019/0019 2025-10-21T15:40:01.334799 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=5 -248236/000/0001/R EE38C9AC8F7A9511 0020/0020 2025-10-21T15:40:02.335625 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=6 -248236/000/0001/R EE38C9AC8F7A9511 0021/0021 2025-10-21T15:40:02.335884 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -248236/000/0001/R EE38C9AC8F7A9511 0022/0022 2025-10-21T15:40:02.335918 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0023/0023 2025-10-21T15:40:02.335949 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -248236/000/0001/R EE38C9AC8F7A9511 0024/0024 2025-10-21T15:40:02.335977 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -248236/000/0001/R EE38C9AC8F7A9511 0025/0025 2025-10-21T15:40:02.336002 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0026/0026 2025-10-21T15:40:02.336285 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=7 -248236/000/0001/R EE38C9AC8F7A9511 0027/0027 2025-10-21T15:40:04.837143 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=8 -248236/000/0001/R EE38C9AC8F7A9511 0028/0028 2025-10-21T15:40:04.837420 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -248236/000/0001/R EE38C9AC8F7A9511 0029/0029 2025-10-21T15:40:04.837462 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0030/0030 2025-10-21T15:40:04.837510 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -248236/000/0001/R EE38C9AC8F7A9511 0031/0031 2025-10-21T15:40:04.837538 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -248236/000/0001/R EE38C9AC8F7A9511 0032/0032 2025-10-21T15:40:04.837563 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0033/0033 2025-10-21T15:40:04.837798 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=9 -248236/000/0001/R EE38C9AC8F7A9511 0034/0034 2025-10-21T15:40:09.588663 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=10 -248236/000/0001/R EE38C9AC8F7A9511 0035/0035 2025-10-21T15:40:09.588929 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -248236/000/0001/R EE38C9AC8F7A9511 0036/0036 2025-10-21T15:40:09.588966 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0037/0037 2025-10-21T15:40:09.588996 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -248236/000/0001/R EE38C9AC8F7A9511 0038/0038 2025-10-21T15:40:09.589023 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -248236/000/0001/R EE38C9AC8F7A9511 0039/0039 2025-10-21T15:40:09.589050 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0040/0040 2025-10-21T15:40:09.589434 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=11 -248236/000/0001/R EE38C9AC8F7A9511 0041/0041 2025-10-21T15:40:17.715284 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=12 -248236/000/0001/R EE38C9AC8F7A9511 0042/0042 2025-10-21T15:40:17.715626 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -248236/000/0001/R EE38C9AC8F7A9511 0043/0043 2025-10-21T15:40:17.715666 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0044/0044 2025-10-21T15:40:17.715705 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -248236/000/0001/R EE38C9AC8F7A9511 0045/0045 2025-10-21T15:40:17.715731 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -248236/000/0001/R EE38C9AC8F7A9511 0046/0046 2025-10-21T15:40:17.715756 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0047/0047 2025-10-21T15:40:17.716018 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=13 -248236/000/0001/R EE38C9AC8F7A9511 0048/0048 2025-10-21T15:40:30.904358 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=14 -248236/000/0001/R EE38C9AC8F7A9511 0049/0049 2025-10-21T15:40:30.904611 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -248236/000/0001/R EE38C9AC8F7A9511 0050/0050 2025-10-21T15:40:30.904646 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0051/0051 2025-10-21T15:40:30.904676 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -248236/000/0001/R EE38C9AC8F7A9511 0052/0052 2025-10-21T15:40:30.904704 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -248236/000/0001/R EE38C9AC8F7A9511 0053/0053 2025-10-21T15:40:30.904729 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0054/0054 2025-10-21T15:40:30.904965 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=15 -248236/000/0001/R EE38C9AC8F7A9511 0055/0055 2025-10-21T15:40:51.687078 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=16 -248236/000/0001/R EE38C9AC8F7A9511 0056/0056 2025-10-21T15:40:51.687357 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -248236/000/0001/R EE38C9AC8F7A9511 0057/0057 2025-10-21T15:40:51.687394 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0058/0058 2025-10-21T15:40:51.687433 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -248236/000/0001/R EE38C9AC8F7A9511 0059/0059 2025-10-21T15:40:51.687463 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -248236/000/0001/R EE38C9AC8F7A9511 0060/0060 2025-10-21T15:40:51.687489 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0061/0061 2025-10-21T15:40:51.687724 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=17 -248236/000/0001/R EE38C9AC8F7A9511 0062/0062 2025-10-21T15:41:21.688449 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=18 -248236/000/0001/R EE38C9AC8F7A9511 0063/0063 2025-10-21T15:41:21.688690 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -248236/000/0001/R EE38C9AC8F7A9511 0064/0064 2025-10-21T15:41:21.688723 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0065/0065 2025-10-21T15:41:21.688752 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -248236/000/0001/R EE38C9AC8F7A9511 0066/0066 2025-10-21T15:41:21.688777 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -248236/000/0001/R EE38C9AC8F7A9511 0067/0067 2025-10-21T15:41:21.688799 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0068/0068 2025-10-21T15:41:21.689032 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=19 -248236/000/0001/R EE38C9AC8F7A9511 0069/0069 2025-10-21T15:41:51.689659 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test extra issued_subhit=20 -248236/000/0001/R EE38C9AC8F7A9511 0070/0070 2025-10-21T15:41:51.689823 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -248236/000/0001/R EE38C9AC8F7A9511 0071/0071 2025-10-21T15:41:51.689840 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -248236/000/0001/R EE38C9AC8F7A9511 0072/0072 2025-10-21T15:41:51.689862 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -248236/000/0001/R EE38C9AC8F7A9511 0073/0073 2025-10-21T15:41:51.689875 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -248236/000/0001/R EE38C9AC8F7A9511 0074/0074 2025-10-21T15:41:51.689888 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -248236/000/0001/RE EE38C9AC8F7A9511 0075/0075 2025-10-21T15:41:51.690566 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9511_0001SID aascan_unit_test request-stop 500 110.358350038 0 0 -unknown location(0): fatal error: in "aascan/ScanOffsetTest": ncbi::objects::CLoaderException: NCBI C++ Exception: - Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 - Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|18652417)) - -./c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(251): last checkpoint: "ScanOffsetTest" fixture entry. -248236/000/0002/RB EE38C9AC8F7A9511 0078/0078 2025-10-21T15:41:51.693622 codethink04-arm64 UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanMaxHitsTest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -248236/000/0002/R EE38C9AC8F7A9511 0079/0079 2025-10-21T15:41:51.693734 codethink04-arm64 UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_phid=EE38C9AC8F7A95110000000000020002 -248236/000/0002/R EE38C9AC8F7A9511 0080/0080 2025-10-21T15:41:51.693754 codethink04-arm64 UNK_CLIENT UNK_SESSION aascan_unit_test extra issued_subhit=1 -248236/000/0002/R EE38C9AC8F7A9511 0081/0081 2025-10-21T15:42:21.694698 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9DD1_0002SID aascan_unit_test extra issued_subhit=2 -248236/000/0002/R EE38C9AC8F7A9511 0082/0082 2025-10-21T15:42:21.694981 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9DD1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -248236/000/0002/R EE38C9AC8F7A9511 0083/0083 2025-10-21T15:42:21.695017 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9DD1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -248236/000/0002/R EE38C9AC8F7A9511 0084/0084 2025-10-21T15:42:21.695050 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9DD1_0002SID aascan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -248236/000/0002/R EE38C9AC8F7A9511 0085/0085 2025-10-21T15:42:21.695081 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9DD1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -248236/000/0002/R EE38C9AC8F7A9511 0086/0086 2025-10-21T15:42:21.695108 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9DD1_0002SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -248236/000/0002/R EE38C9AC8F7A9511 0087/0087 2025-10-21T15:42:21.695420 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9DD1_0002SID aascan_unit_test extra issued_subhit=3 -248236/000/0002/R EE38C9AC8F7A9511 0088/0088 2025-10-21T15:42:51.695852 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9DD1_0002SID aascan_unit_test extra issued_subhit=4 -248236/000/0002/R EE38C9AC8F7A9511 0089/0089 2025-10-21T15:42:51.696007 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9DD1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -248236/000/0002/R EE38C9AC8F7A9511 0090/0090 2025-10-21T15:42:51.696024 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9DD1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -248236/000/0002/R EE38C9AC8F7A9511 0091/0091 2025-10-21T15:42:51.696036 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9DD1_0002SID aascan_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -248236/000/0002/R EE38C9AC8F7A9511 0092/0092 2025-10-21T15:42:51.696048 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9DD1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -248236/000/0002/R EE38C9AC8F7A9511 0093/0093 2025-10-21T15:42:51.696060 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9DD1_0002SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -248236/000/0002/R EE38C9AC8F7A9511 0094/0094 2025-10-21T15:42:51.696180 codethink04-arm64 UNK_CLIENT EE38C9AC8F7A9DD1_0002SID aascan_unit_test extra issued_subhit=5 - -Maximum execution time of 200 second(s) is exceeded - -real 200.16 -user 0.19 -sys 0.06 -Start time : 10/21/2025 15:40:01 -Stop time : 10/21/2025 15:43:21 -Load averages: 10.81 5.10 8.01 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -remote_blast_unit_test -====================================================================== - -325179/000/0000/PB EE38F63B8F7AA191 0001/0001 2025-10-21T15:43:21.542790 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/remote_blast_unit_test -325179/000/0000/PB EE38F63B8F7AA191 0002/0002 2025-10-21T15:43:21.543037 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/remote_blast_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 37 test cases... -325179/000/0001/RB EE38F63B8F7AA191 0003/0003 2025-10-21T15:43:21.547813 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=MaskedQueryRegions&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0001/R EE38F63B8F7AA191 0004/0004 2025-10-21T15:43:21.554773 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0001SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA1910000000000010001 -325179/000/0001/R EE38F63B8F7AA191 0005/0005 2025-10-21T15:43:21.554806 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0001SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0001/R EE38F63B8F7AA191 0012/0012 2025-10-21T15:43:21.557634 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0001SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0001/R EE38F63B8F7AA191 0013/0013 2025-10-21T15:43:21.557661 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0001SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 118: remote_blast::MaskedQueryRegions_invoker() --- Uncaught exception in "MaskedQueryRegions"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0001/RE EE38F63B8F7AA191 0015/0015 2025-10-21T15:43:21.557706 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0001SID remote_blast_unit_test request-stop 500 0.009912967 0 0 -unknown location(0): fatal error: in "remote_blast/MaskedQueryRegions": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(167): last checkpoint -325179/000/0002/RB EE38F63B8F7AA191 0016/0016 2025-10-21T15:43:21.558145 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=CheckRemoteRPSBlastOptionsHandle&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0002/R EE38F63B8F7AA191 0017/0017 2025-10-21T15:43:21.558726 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0002SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA1910000000000020002 -325179/000/0002/R EE38F63B8F7AA191 0018/0018 2025-10-21T15:43:21.558745 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0002SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0002/R EE38F63B8F7AA191 0025/0025 2025-10-21T15:43:21.559026 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0002SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0002/R EE38F63B8F7AA191 0026/0026 2025-10-21T15:43:21.559042 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0002SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 202: remote_blast::CheckRemoteRPSBlastOptionsHandle_invoker() --- Uncaught exception in "CheckRemoteRPSBlastOptionsHandle"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0002/RE EE38F63B8F7AA191 0028/0028 2025-10-21T15:43:21.559350 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0002SID remote_blast_unit_test request-stop 500 0.001204967 0 0 -unknown location(0): fatal error: in "remote_blast/CheckRemoteRPSBlastOptionsHandle": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(213): last checkpoint -325179/000/0003/RB EE38F63B8F7AA191 0029/0029 2025-10-21T15:43:21.560068 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=CheckBlastnMasks&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0003/R EE38F63B8F7AA191 0030/0030 2025-10-21T15:43:21.560924 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0003SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA1910000000000030003 -325179/000/0003/R EE38F63B8F7AA191 0031/0031 2025-10-21T15:43:21.560940 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0003SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0003/R EE38F63B8F7AA191 0038/0038 2025-10-21T15:43:21.561210 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0003SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0003/R EE38F63B8F7AA191 0039/0039 2025-10-21T15:43:21.561470 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0003SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 217: remote_blast::CheckBlastnMasks_invoker() --- Uncaught exception in "CheckBlastnMasks"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0003/RE EE38F63B8F7AA191 0041/0041 2025-10-21T15:43:21.561509 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0003SID remote_blast_unit_test request-stop 500 0.001448869 0 0 -unknown location(0): fatal error: in "remote_blast/CheckBlastnMasks": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(222): last checkpoint -325179/000/0004/RB EE38F63B8F7AA191 0042/0042 2025-10-21T15:43:21.562155 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=CheckBlastpMasks&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0004/R EE38F63B8F7AA191 0043/0043 2025-10-21T15:43:21.562782 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0004SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA1910000000000040004 -325179/000/0004/R EE38F63B8F7AA191 0044/0044 2025-10-21T15:43:21.562797 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0004SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0004/R EE38F63B8F7AA191 0051/0051 2025-10-21T15:43:21.563335 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0004SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0004/R EE38F63B8F7AA191 0052/0052 2025-10-21T15:43:21.563355 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0004SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 306: remote_blast::CheckBlastpMasks_invoker() --- Uncaught exception in "CheckBlastpMasks"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0004/RE EE38F63B8F7AA191 0054/0054 2025-10-21T15:43:21.563387 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0004SID remote_blast_unit_test request-stop 500 0.001241207 0 0 -unknown location(0): fatal error: in "remote_blast/CheckBlastpMasks": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(311): last checkpoint -325179/000/0005/RB EE38F63B8F7AA191 0055/0055 2025-10-21T15:43:21.564331 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=CheckBlastxMasks&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0005/R EE38F63B8F7AA191 0056/0056 2025-10-21T15:43:21.564758 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0005SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA1910000000000050005 -325179/000/0005/R EE38F63B8F7AA191 0057/0057 2025-10-21T15:43:21.564772 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0005SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0005/R EE38F63B8F7AA191 0064/0064 2025-10-21T15:43:21.565045 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0005SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0005/R EE38F63B8F7AA191 0065/0065 2025-10-21T15:43:21.565062 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0005SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 391: remote_blast::CheckBlastxMasks_invoker() --- Uncaught exception in "CheckBlastxMasks"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0005/RE EE38F63B8F7AA191 0067/0067 2025-10-21T15:43:21.565095 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0005SID remote_blast_unit_test request-stop 500 0.000773906 0 0 -unknown location(0): fatal error: in "remote_blast/CheckBlastxMasks": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(396): last checkpoint -325179/000/0006/RB EE38F63B8F7AA191 0068/0068 2025-10-21T15:43:21.565851 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=SetFilteringOptions&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0006/R EE38F63B8F7AA191 0069/0069 2025-10-21T15:43:21.737076 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0006SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA1910000000000060006 -325179/000/0006/R EE38F63B8F7AA191 0070/0070 2025-10-21T15:43:21.737101 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0006SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0006/R EE38F63B8F7AA191 0077/0077 2025-10-21T15:43:21.737385 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0006SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0006/R EE38F63B8F7AA191 0078/0078 2025-10-21T15:43:21.737402 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0006SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 528: remote_blast::SetFilteringOptions_invoker() --- Uncaught exception in "SetFilteringOptions"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0006/RE EE38F63B8F7AA191 0080/0080 2025-10-21T15:43:21.737430 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0006SID remote_blast_unit_test request-stop 500 0.171586990 0 0 -unknown location(0): fatal error: in "remote_blast/SetFilteringOptions": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(546): last checkpoint -325179/000/0007/RB EE38F63B8F7AA191 0081/0081 2025-10-21T15:43:21.738148 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=SubmitNullDatabase&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0007/RE EE38F63B8F7AA191 0082/0082 2025-10-21T15:43:21.738315 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-stop 200 0.000175952 0 0 -325179/000/0008/RB EE38F63B8F7AA191 0083/0083 2025-10-21T15:43:21.738634 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=SubmitNullQueries&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0008/RE EE38F63B8F7AA191 0084/0084 2025-10-21T15:43:21.739048 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-stop 200 0.000416040 0 0 -325179/000/0009/RB EE38F63B8F7AA191 0085/0085 2025-10-21T15:43:21.739364 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=CheckPrimerBlastRID&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0009/R EE38F63B8F7AA191 0086/0086 2025-10-21T15:43:21.739999 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0009SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA1910000000000090007 -325179/000/0009/R EE38F63B8F7AA191 0087/0087 2025-10-21T15:43:21.740013 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0009SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0009/R EE38F63B8F7AA191 0094/0094 2025-10-21T15:43:21.740257 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0009SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0009/R EE38F63B8F7AA191 0095/0095 2025-10-21T15:43:21.740272 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0009SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 570: remote_blast::CheckPrimerBlastRID_invoker() --- Uncaught exception in "CheckPrimerBlastRID"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0009/RE EE38F63B8F7AA191 0097/0097 2025-10-21T15:43:21.740301 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0009SID remote_blast_unit_test request-stop 500 0.000941991 0 0 -unknown location(0): fatal error: in "remote_blast/CheckPrimerBlastRID": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(577): last checkpoint -325179/000/0010/RB EE38F63B8F7AA191 0098/0098 2025-10-21T15:43:21.740638 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=CheckRID&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0010/R EE38F63B8F7AA191 0099/0099 2025-10-21T15:43:21.740981 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0010SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA19100000000000A0008 -325179/000/0010/R EE38F63B8F7AA191 0100/0100 2025-10-21T15:43:21.740992 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0010SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0010/R EE38F63B8F7AA191 0107/0107 2025-10-21T15:43:21.741466 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0010SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0010/R EE38F63B8F7AA191 0108/0108 2025-10-21T15:43:21.741483 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0010SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 585: remote_blast::CheckRID_invoker() --- Uncaught exception in "CheckRID"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0010/RE EE38F63B8F7AA191 0110/0110 2025-10-21T15:43:21.741509 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0010SID remote_blast_unit_test request-stop 500 0.000876188 0 0 -unknown location(0): fatal error: in "remote_blast/CheckRID": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(591): last checkpoint -325179/000/0011/RB EE38F63B8F7AA191 0111/0111 2025-10-21T15:43:21.742057 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=GetErrorsFromFailedRID&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0011/R EE38F63B8F7AA191 0112/0112 2025-10-21T15:43:21.742421 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0011SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA19100000000000B0009 -325179/000/0011/R EE38F63B8F7AA191 0113/0113 2025-10-21T15:43:21.742434 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0011SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0011/R EE38F63B8F7AA191 0120/0120 2025-10-21T15:43:21.742667 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0011SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0011/R EE38F63B8F7AA191 0121/0121 2025-10-21T15:43:21.742680 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0011SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 599: remote_blast::GetErrorsFromFailedRID_invoker() --- Uncaught exception in "GetErrorsFromFailedRID"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0011/RE EE38F63B8F7AA191 0123/0123 2025-10-21T15:43:21.742706 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0011SID remote_blast_unit_test request-stop 500 0.000655889 0 0 -unknown location(0): fatal error: in "remote_blast/GetErrorsFromFailedRID": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(599): last checkpoint: "GetErrorsFromFailedRID" entry. -325179/000/0012/RB EE38F63B8F7AA191 0124/0124 2025-10-21T15:43:21.743284 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=RetrieveInvalidRID&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0012/R EE38F63B8F7AA191 0125/0125 2025-10-21T15:43:21.743638 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0012SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA19100000000000C000A -325179/000/0012/R EE38F63B8F7AA191 0126/0126 2025-10-21T15:43:21.743651 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0012SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0012/R EE38F63B8F7AA191 0133/0133 2025-10-21T15:43:21.743870 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0012SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0012/R EE38F63B8F7AA191 0134/0134 2025-10-21T15:43:21.743884 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0012SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 621: remote_blast::RetrieveInvalidRID_invoker() --- Uncaught exception in "RetrieveInvalidRID"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0012/RE EE38F63B8F7AA191 0136/0136 2025-10-21T15:43:21.743910 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0012SID remote_blast_unit_test request-stop 500 0.000633001 0 0 -unknown location(0): fatal error: in "remote_blast/RetrieveInvalidRID": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(630): last checkpoint -325179/000/0013/RB EE38F63B8F7AA191 0137/0137 2025-10-21T15:43:21.744473 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=RetrieveRIDWithError&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0013/R EE38F63B8F7AA191 0138/0138 2025-10-21T15:43:21.744823 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0013SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA19100000000000D000B -325179/000/0013/R EE38F63B8F7AA191 0139/0139 2025-10-21T15:43:21.744836 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0013SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0013/R EE38F63B8F7AA191 0146/0146 2025-10-21T15:43:21.745050 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0013SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0013/R EE38F63B8F7AA191 0147/0147 2025-10-21T15:43:21.745063 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0013SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 637: remote_blast::RetrieveRIDWithError_invoker() --- Uncaught exception in "RetrieveRIDWithError"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0013/RE EE38F63B8F7AA191 0149/0149 2025-10-21T15:43:21.745088 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0013SID remote_blast_unit_test request-stop 500 0.000622034 0 0 -unknown location(0): fatal error: in "remote_blast/RetrieveRIDWithError": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(645): last checkpoint -325179/000/0014/RB EE38F63B8F7AA191 0150/0150 2025-10-21T15:43:21.745404 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=RetrieveRIDWithSIGXCPU&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0014/R EE38F63B8F7AA191 0151/0151 2025-10-21T15:43:21.746000 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0014SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA19100000000000E000C -325179/000/0014/R EE38F63B8F7AA191 0152/0152 2025-10-21T15:43:21.746013 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0014SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0014/R EE38F63B8F7AA191 0159/0159 2025-10-21T15:43:21.746269 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0014SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0014/R EE38F63B8F7AA191 0160/0160 2025-10-21T15:43:21.746284 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0014SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 652: remote_blast::RetrieveRIDWithSIGXCPU_invoker() --- Uncaught exception in "RetrieveRIDWithSIGXCPU"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0014/RE EE38F63B8F7AA191 0162/0162 2025-10-21T15:43:21.746311 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0014SID remote_blast_unit_test request-stop 500 0.000909805 0 0 -unknown location(0): fatal error: in "remote_blast/RetrieveRIDWithSIGXCPU": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(660): last checkpoint -325179/000/0015/RB EE38F63B8F7AA191 0163/0163 2025-10-21T15:43:21.746904 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=CheckRemoteNuclOptionsHandle&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0015/RE EE38F63B8F7AA191 0164/0164 2025-10-21T15:43:21.746980 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-stop 200 0.000082015 0 0 -325179/000/0016/RB EE38F63B8F7AA191 0165/0165 2025-10-21T15:43:21.747482 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=CheckRemoteDiscNuclOptionsHandle&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0016/RE EE38F63B8F7AA191 0166/0166 2025-10-21T15:43:21.747746 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-stop 200 0.000267028 0 0 -325179/000/0017/RB EE38F63B8F7AA191 0167/0167 2025-10-21T15:43:21.747991 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=RetrieveMultipleQueryResults&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0017/R EE38F63B8F7AA191 0168/0168 2025-10-21T15:43:21.748825 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0017SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA191000000000011000D -325179/000/0017/R EE38F63B8F7AA191 0169/0169 2025-10-21T15:43:21.748838 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0017SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0017/R EE38F63B8F7AA191 0176/0176 2025-10-21T15:43:21.749082 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0017SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0017/R EE38F63B8F7AA191 0177/0177 2025-10-21T15:43:21.749097 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0017SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 720: remote_blast::RetrieveMultipleQueryResults_invoker() --- Uncaught exception in "RetrieveMultipleQueryResults"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0017/RE EE38F63B8F7AA191 0179/0179 2025-10-21T15:43:21.749125 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0017SID remote_blast_unit_test request-stop 500 0.001137971 0 0 -unknown location(0): fatal error: in "remote_blast/RetrieveMultipleQueryResults": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(720): last checkpoint: "RetrieveMultipleQueryResults" entry. -325179/000/0018/RB EE38F63B8F7AA191 0180/0180 2025-10-21T15:43:21.749443 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=RetrieveQuerySet&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0018/R EE38F63B8F7AA191 0181/0181 2025-10-21T15:43:21.750041 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0018SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA191000000000012000E -325179/000/0018/R EE38F63B8F7AA191 0182/0182 2025-10-21T15:43:21.750054 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0018SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0018/R EE38F63B8F7AA191 0189/0189 2025-10-21T15:43:21.750285 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0018SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0018/R EE38F63B8F7AA191 0190/0190 2025-10-21T15:43:21.750298 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0018SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 743: remote_blast::RetrieveQuerySet_invoker() --- Uncaught exception in "RetrieveQuerySet"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0018/RE EE38F63B8F7AA191 0192/0192 2025-10-21T15:43:21.750324 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0018SID remote_blast_unit_test request-stop 500 0.000884056 0 0 -unknown location(0): fatal error: in "remote_blast/RetrieveQuerySet": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(743): last checkpoint: "RetrieveQuerySet" entry. -325179/000/0019/RB EE38F63B8F7AA191 0193/0193 2025-10-21T15:43:21.750670 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=GetRequestInfo&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0019/R EE38F63B8F7AA191 0194/0194 2025-10-21T15:43:21.752459 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0019SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA191000000000013000F -325179/000/0019/R EE38F63B8F7AA191 0195/0195 2025-10-21T15:43:21.752476 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0019SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0019/R EE38F63B8F7AA191 0202/0202 2025-10-21T15:43:21.752988 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0019SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0019/R EE38F63B8F7AA191 0203/0203 2025-10-21T15:43:21.753006 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0019SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 767: remote_blast::GetRequestInfo_invoker() --- Uncaught exception in "GetRequestInfo"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0019/RE EE38F63B8F7AA191 0205/0205 2025-10-21T15:43:21.753038 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0019SID remote_blast_unit_test request-stop 500 0.002370119 0 0 -unknown location(0): fatal error: in "remote_blast/GetRequestInfo": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(767): last checkpoint: "GetRequestInfo" entry. -325179/000/0020/RB EE38F63B8F7AA191 0206/0206 2025-10-21T15:43:21.753378 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=FetchQuerySequence&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0020/R EE38F63B8F7AA191 0207/0207 2025-10-21T15:43:21.755712 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0020SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA1910000000000140010 -325179/000/0020/R EE38F63B8F7AA191 0208/0208 2025-10-21T15:43:21.755731 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0020SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0020/R EE38F63B8F7AA191 0215/0215 2025-10-21T15:43:21.755968 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0020SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0020/R EE38F63B8F7AA191 0216/0216 2025-10-21T15:43:21.755983 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0020SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 790: remote_blast::FetchQuerySequence_invoker() --- Uncaught exception in "FetchQuerySequence"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0020/RE EE38F63B8F7AA191 0218/0218 2025-10-21T15:43:21.756011 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0020SID remote_blast_unit_test request-stop 500 0.002635955 0 0 -unknown location(0): fatal error: in "remote_blast/FetchQuerySequence": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(790): last checkpoint: "FetchQuerySequence" entry. -325179/000/0021/RB EE38F63B8F7AA191 0219/0219 2025-10-21T15:43:21.756346 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=FetchQuerySequence_NotFound&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0021/R EE38F63B8F7AA191 0220/0220 2025-10-21T15:43:21.757205 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0021SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA1910000000000150011 -325179/000/0021/R EE38F63B8F7AA191 0221/0221 2025-10-21T15:43:21.757219 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0021SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0021/R EE38F63B8F7AA191 0228/0228 2025-10-21T15:43:21.758406 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0021SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0021/R EE38F63B8F7AA191 0229/0229 2025-10-21T15:43:21.758423 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0021SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 858: remote_blast::FetchQuerySequence_NotFound_invoker() --- Uncaught exception in "FetchQuerySequence_NotFound"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0021/RE EE38F63B8F7AA191 0231/0231 2025-10-21T15:43:21.758451 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0021SID remote_blast_unit_test request-stop 500 0.002107858 0 0 -unknown location(0): fatal error: in "remote_blast/FetchQuerySequence_NotFound": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(858): last checkpoint: "FetchQuerySequence_NotFound" entry. -325179/000/0022/RB EE38F63B8F7AA191 0232/0232 2025-10-21T15:43:21.759096 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=SearchOptionsFromRID&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0022/R EE38F63B8F7AA191 0233/0233 2025-10-21T15:43:21.759469 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0022SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA1910000000000160012 -325179/000/0022/R EE38F63B8F7AA191 0234/0234 2025-10-21T15:43:21.759481 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0022SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0022/R EE38F63B8F7AA191 0241/0241 2025-10-21T15:43:21.759719 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0022SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0022/R EE38F63B8F7AA191 0242/0242 2025-10-21T15:43:21.759733 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0022SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 883: remote_blast::SearchOptionsFromRID_invoker() --- Uncaught exception in "SearchOptionsFromRID"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0022/RE EE38F63B8F7AA191 0244/0244 2025-10-21T15:43:21.759762 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0022SID remote_blast_unit_test request-stop 500 0.000673055 0 0 -unknown location(0): fatal error: in "remote_blast/SearchOptionsFromRID": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(883): last checkpoint: "SearchOptionsFromRID" entry. -325179/000/0023/RB EE38F63B8F7AA191 0245/0245 2025-10-21T15:43:21.760388 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=CheckLongLifeHits&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0023/R EE38F63B8F7AA191 0246/0246 2025-10-21T15:43:21.760753 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0023SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA1910000000000170013 -325179/000/0023/R EE38F63B8F7AA191 0247/0247 2025-10-21T15:43:21.760772 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0023SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0023/R EE38F63B8F7AA191 0254/0254 2025-10-21T15:43:21.761004 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0023SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0023/R EE38F63B8F7AA191 0255/0255 2025-10-21T15:43:21.761018 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0023SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 953: remote_blast::CheckLongLifeHits_invoker() --- Uncaught exception in "CheckLongLifeHits"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0023/RE EE38F63B8F7AA191 0257/0257 2025-10-21T15:43:21.761044 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0023SID remote_blast_unit_test request-stop 500 0.000663995 0 0 -unknown location(0): fatal error: in "remote_blast/CheckLongLifeHits": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(958): last checkpoint -325179/000/0024/RB EE38F63B8F7AA191 0258/0258 2025-10-21T15:43:21.761642 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=CheckShortRIDs&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0024/R EE38F63B8F7AA191 0259/0259 2025-10-21T15:43:21.761984 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0024SID remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA1910000000000180014 -325179/000/0024/R EE38F63B8F7AA191 0260/0260 2025-10-21T15:43:21.761996 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0024SID remote_blast_unit_test extra issued_subhit=1 -325179/000/0024/R EE38F63B8F7AA191 0267/0267 2025-10-21T15:43:21.762224 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0024SID remote_blast_unit_test Error: SERIAL(CRPCClientException::eFailed) "rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) -325179/000/0024/R EE38F63B8F7AA191 0268/0268 2025-10-21T15:43:21.762238 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0024SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 962: remote_blast::CheckShortRIDs_invoker() --- Uncaught exception in "CheckShortRIDs"(CRPCClientException::eFailed) Connection stream is in bad state (Blast4-request) -325179/000/0024/RE EE38F63B8F7AA191 0270/0270 2025-10-21T15:43:21.762264 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0024SID remote_blast_unit_test request-stop 500 0.000627994 0 0 -unknown location(0): fatal error: in "remote_blast/CheckShortRIDs": NCBI C++ Exception: - Error: SERIAL(CRPCClientException::eFailed) "./c++/src/serial/rpcbase.cpp", line 270: ncbi::CRPCClient_Base::x_Ask() --- Connection stream is in bad state (Blast4-request) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(964): last checkpoint -325179/000/0025/RB EE38F63B8F7AA191 0271/0271 2025-10-21T15:43:21.762620 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=CheckDuplicateOptions&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0025/RE EE38F63B8F7AA191 0272/0272 2025-10-21T15:43:21.762702 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-stop 200 0.000084877 0 0 -325179/000/0026/RB EE38F63B8F7AA191 0273/0273 2025-10-21T15:43:21.763169 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=GetSearchStrategy_FullQuery&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0026/R EE38F63B8F7AA191 0274/0274 2025-10-21T15:43:21.763843 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA19100000000001A0015 -325179/000/0026/R EE38F63B8F7AA191 0275/0275 2025-10-21T15:43:21.763861 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test extra issued_subhit=1 -325179/000/0026/R EE38F63B8F7AA191 0276/0276 2025-10-21T15:43:21.764137 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=2 -325179/000/0026/R EE38F63B8F7AA191 0277/0277 2025-10-21T15:43:21.764261 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#21000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -325179/000/0026/R EE38F63B8F7AA191 0278/0278 2025-10-21T15:43:21.764282 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -325179/000/0026/R EE38F63B8F7AA191 0279/0279 2025-10-21T15:43:21.764292 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -325179/000/0026/R EE38F63B8F7AA191 0280/0280 2025-10-21T15:43:21.764301 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -325179/000/0026/R EE38F63B8F7AA191 0281/0281 2025-10-21T15:43:21.764310 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -325179/000/0026/R EE38F63B8F7AA191 0282/0282 2025-10-21T15:43:21.764433 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=3 -325179/000/0026/R EE38F63B8F7AA191 0283/0283 2025-10-21T15:43:21.764621 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=4 -325179/000/0026/R EE38F63B8F7AA191 0284/0284 2025-10-21T15:43:21.764699 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#22000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -325179/000/0026/R EE38F63B8F7AA191 0285/0285 2025-10-21T15:43:21.764710 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -325179/000/0026/R EE38F63B8F7AA191 0286/0286 2025-10-21T15:43:21.764719 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -325179/000/0026/R EE38F63B8F7AA191 0287/0287 2025-10-21T15:43:21.764726 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -325179/000/0026/R EE38F63B8F7AA191 0288/0288 2025-10-21T15:43:21.764733 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -325179/000/0026/R EE38F63B8F7AA191 0289/0289 2025-10-21T15:43:21.764804 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=5 -325179/000/0026/R EE38F63B8F7AA191 0290/0290 2025-10-21T15:43:22.766262 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=6 -325179/000/0026/R EE38F63B8F7AA191 0291/0291 2025-10-21T15:43:22.766442 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#23000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -325179/000/0026/R EE38F63B8F7AA191 0292/0292 2025-10-21T15:43:22.766460 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -325179/000/0026/R EE38F63B8F7AA191 0293/0293 2025-10-21T15:43:22.766472 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -325179/000/0026/R EE38F63B8F7AA191 0294/0294 2025-10-21T15:43:22.766482 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -325179/000/0026/R EE38F63B8F7AA191 0295/0295 2025-10-21T15:43:22.766493 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -325179/000/0026/R EE38F63B8F7AA191 0296/0296 2025-10-21T15:43:22.766614 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=7 -325179/000/0026/R EE38F63B8F7AA191 0297/0297 2025-10-21T15:43:25.267065 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=8 -325179/000/0026/R EE38F63B8F7AA191 0298/0298 2025-10-21T15:43:25.267242 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#24000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -325179/000/0026/R EE38F63B8F7AA191 0299/0299 2025-10-21T15:43:25.267259 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -325179/000/0026/R EE38F63B8F7AA191 0300/0300 2025-10-21T15:43:25.267270 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -325179/000/0026/R EE38F63B8F7AA191 0301/0301 2025-10-21T15:43:25.267281 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -325179/000/0026/R EE38F63B8F7AA191 0302/0302 2025-10-21T15:43:25.267304 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -325179/000/0026/R EE38F63B8F7AA191 0303/0303 2025-10-21T15:43:25.267433 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=9 -325179/000/0026/R EE38F63B8F7AA191 0304/0304 2025-10-21T15:43:30.017846 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=10 -325179/000/0026/R EE38F63B8F7AA191 0305/0305 2025-10-21T15:43:30.017990 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#25000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -325179/000/0026/R EE38F63B8F7AA191 0306/0306 2025-10-21T15:43:30.018005 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -325179/000/0026/R EE38F63B8F7AA191 0307/0307 2025-10-21T15:43:30.018016 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -325179/000/0026/R EE38F63B8F7AA191 0308/0308 2025-10-21T15:43:30.018026 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -325179/000/0026/R EE38F63B8F7AA191 0309/0309 2025-10-21T15:43:30.018037 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -325179/000/0026/R EE38F63B8F7AA191 0310/0310 2025-10-21T15:43:30.018369 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=11 -325179/000/0026/R EE38F63B8F7AA191 0311/0311 2025-10-21T15:43:38.143767 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=12 -325179/000/0026/R EE38F63B8F7AA191 0312/0312 2025-10-21T15:43:38.143911 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#26000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -325179/000/0026/R EE38F63B8F7AA191 0313/0313 2025-10-21T15:43:38.143927 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -325179/000/0026/R EE38F63B8F7AA191 0314/0314 2025-10-21T15:43:38.143939 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -325179/000/0026/R EE38F63B8F7AA191 0315/0315 2025-10-21T15:43:38.143948 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -325179/000/0026/R EE38F63B8F7AA191 0316/0316 2025-10-21T15:43:38.143964 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -325179/000/0026/R EE38F63B8F7AA191 0317/0317 2025-10-21T15:43:38.144101 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=13 -325179/000/0026/R EE38F63B8F7AA191 0318/0318 2025-10-21T15:43:51.332343 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=14 -325179/000/0026/R EE38F63B8F7AA191 0319/0319 2025-10-21T15:43:51.332596 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#27000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -325179/000/0026/R EE38F63B8F7AA191 0320/0320 2025-10-21T15:43:51.332629 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -325179/000/0026/R EE38F63B8F7AA191 0321/0321 2025-10-21T15:43:51.332656 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -325179/000/0026/R EE38F63B8F7AA191 0322/0322 2025-10-21T15:43:51.332679 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -325179/000/0026/R EE38F63B8F7AA191 0323/0323 2025-10-21T15:43:51.332700 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -325179/000/0026/R EE38F63B8F7AA191 0324/0324 2025-10-21T15:43:51.332940 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=15 -325179/000/0026/R EE38F63B8F7AA191 0325/0325 2025-10-21T15:44:12.114609 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=16 -325179/000/0026/R EE38F63B8F7AA191 0326/0326 2025-10-21T15:44:12.114752 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#28000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -325179/000/0026/R EE38F63B8F7AA191 0327/0327 2025-10-21T15:44:12.114768 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -325179/000/0026/R EE38F63B8F7AA191 0328/0328 2025-10-21T15:44:12.114779 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -325179/000/0026/R EE38F63B8F7AA191 0329/0329 2025-10-21T15:44:12.114789 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -325179/000/0026/R EE38F63B8F7AA191 0330/0330 2025-10-21T15:44:12.114806 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -325179/000/0026/R EE38F63B8F7AA191 0331/0331 2025-10-21T15:44:12.114930 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=17 -325179/000/0026/R EE38F63B8F7AA191 0332/0332 2025-10-21T15:44:42.115703 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=18 -325179/000/0026/R EE38F63B8F7AA191 0333/0333 2025-10-21T15:44:42.115944 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#29000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -325179/000/0026/R EE38F63B8F7AA191 0334/0334 2025-10-21T15:44:42.115977 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -325179/000/0026/R EE38F63B8F7AA191 0335/0335 2025-10-21T15:44:42.116003 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -325179/000/0026/R EE38F63B8F7AA191 0336/0336 2025-10-21T15:44:42.116026 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -325179/000/0026/R EE38F63B8F7AA191 0337/0337 2025-10-21T15:44:42.116048 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -325179/000/0026/R EE38F63B8F7AA191 0338/0338 2025-10-21T15:44:42.116284 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=19 -325179/000/0026/R EE38F63B8F7AA191 0339/0339 2025-10-21T15:45:12.116706 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test extra issued_subhit=20 -325179/000/0026/R EE38F63B8F7AA191 0340/0340 2025-10-21T15:45:12.116844 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#30000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -325179/000/0026/R EE38F63B8F7AA191 0341/0341 2025-10-21T15:45:12.116859 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -325179/000/0026/R EE38F63B8F7AA191 0342/0342 2025-10-21T15:45:12.116871 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -325179/000/0026/R EE38F63B8F7AA191 0343/0343 2025-10-21T15:45:12.116881 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -325179/000/0026/R EE38F63B8F7AA191 0344/0344 2025-10-21T15:45:12.116898 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -325179/000/0026/R EE38F63B8F7AA191 0345/0345 2025-10-21T15:45:12.117693 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: ID2(CLoaderException::eConnectionFailed) "reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 -325179/000/0026/R EE38F63B8F7AA191 0346/0346 2025-10-21T15:45:12.117713 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: GENBANK(CLoaderException::eConnectionFailed) "reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|555)) -325179/000/0026/R EE38F63B8F7AA191 0347/0347 2025-10-21T15:45:12.117722 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test Error: API "remote_blast_unit_test.cpp", line 1007: remote_blast::GetSearchStrategy_FullQuery_invoker() --- Uncaught exception in "GetSearchStrategy_FullQuery"(CLoaderException::eConnectionFailed) failed to send request: NULL (in GetRecords(gi|555)) -325179/000/0026/RE EE38F63B8F7AA191 0350/0350 2025-10-21T15:45:12.117758 codethink04-arm64 UNK_CLIENT EE38F63B8F7AA191_0026SID remote_blast_unit_test request-stop 500 110.354593992 0 0 -unknown location(0): fatal error: in "remote_blast/GetSearchStrategy_FullQuery": NCBI C++ Exception: - Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 - Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL (in GetRecords(gi|555)) - -./c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp(1007): last checkpoint: "GetSearchStrategy_FullQuery" entry. -325179/000/0027/RB EE38F63B8F7AA191 0351/0351 2025-10-21T15:45:12.118436 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test request-start test_name=GetSearchStrategy_QueryWithRange&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -325179/000/0027/R EE38F63B8F7AA191 0352/0352 2025-10-21T15:45:12.118879 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test extra ncbi_phid=EE38F63B8F7AA19100000000001B0016 -325179/000/0027/R EE38F63B8F7AA191 0353/0353 2025-10-21T15:45:12.118900 codethink04-arm64 UNK_CLIENT UNK_SESSION remote_blast_unit_test extra issued_subhit=1 -325179/000/0027/R EE38F63B8F7AA191 0354/0354 2025-10-21T15:45:42.119688 codethink04-arm64 UNK_CLIENT EE38F63B8F7AAA61_0027SID remote_blast_unit_test extra issued_subhit=2 -325179/000/0027/R EE38F63B8F7AA191 0355/0355 2025-10-21T15:45:42.119924 codethink04-arm64 UNK_CLIENT EE38F63B8F7AAA61_0027SID remote_blast_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#31000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -325179/000/0027/R EE38F63B8F7AA191 0356/0356 2025-10-21T15:45:42.119956 codethink04-arm64 UNK_CLIENT EE38F63B8F7AAA61_0027SID remote_blast_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -325179/000/0027/R EE38F63B8F7AA191 0357/0357 2025-10-21T15:45:42.119984 codethink04-arm64 UNK_CLIENT EE38F63B8F7AAA61_0027SID remote_blast_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -325179/000/0027/R EE38F63B8F7AA191 0358/0358 2025-10-21T15:45:42.120016 codethink04-arm64 UNK_CLIENT EE38F63B8F7AAA61_0027SID remote_blast_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -325179/000/0027/R EE38F63B8F7AA191 0359/0359 2025-10-21T15:45:42.120039 codethink04-arm64 UNK_CLIENT EE38F63B8F7AAA61_0027SID remote_blast_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -325179/000/0027/R EE38F63B8F7AA191 0360/0360 2025-10-21T15:45:42.120275 codethink04-arm64 UNK_CLIENT EE38F63B8F7AAA61_0027SID remote_blast_unit_test extra issued_subhit=3 -325179/000/0027/R EE38F63B8F7AA191 0361/0361 2025-10-21T15:46:12.121011 codethink04-arm64 UNK_CLIENT EE38F63B8F7AAA61_0027SID remote_blast_unit_test extra issued_subhit=4 -325179/000/0027/R EE38F63B8F7AA191 0362/0362 2025-10-21T15:46:12.121251 codethink04-arm64 UNK_CLIENT EE38F63B8F7AAA61_0027SID remote_blast_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#32000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -325179/000/0027/R EE38F63B8F7AA191 0363/0363 2025-10-21T15:46:12.121284 codethink04-arm64 UNK_CLIENT EE38F63B8F7AAA61_0027SID remote_blast_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -325179/000/0027/R EE38F63B8F7AA191 0364/0364 2025-10-21T15:46:12.121310 codethink04-arm64 UNK_CLIENT EE38F63B8F7AAA61_0027SID remote_blast_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -325179/000/0027/R EE38F63B8F7AA191 0365/0365 2025-10-21T15:46:12.121334 codethink04-arm64 UNK_CLIENT EE38F63B8F7AAA61_0027SID remote_blast_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -325179/000/0027/R EE38F63B8F7AA191 0366/0366 2025-10-21T15:46:12.121356 codethink04-arm64 UNK_CLIENT EE38F63B8F7AAA61_0027SID remote_blast_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -325179/000/0027/R EE38F63B8F7AA191 0367/0367 2025-10-21T15:46:12.121589 codethink04-arm64 UNK_CLIENT EE38F63B8F7AAA61_0027SID remote_blast_unit_test extra issued_subhit=5 - -Maximum execution time of 200 second(s) is exceeded - -real 200.14 -user 0.33 -sys 0.08 -Start time : 10/21/2025 15:43:21 -Stop time : 10/21/2025 15:46:41 -Load averages: 9.56 6.59 8.02 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -blastfilter_unit_test -====================================================================== - -385612/000/0000/PB EE38E24C8F7AAE21 0001/0001 2025-10-21T15:46:42.048208 codethink04-arm64 UNK_CLIENT UNK_SESSION blastfilter_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/blastfilter_unit_test -385612/000/0000/PB EE38E24C8F7AAE21 0002/0002 2025-10-21T15:46:42.048395 codethink04-arm64 UNK_CLIENT UNK_SESSION blastfilter_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/blastfilter_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 56 test cases... -385612/000/0001/RB EE38E24C8F7AAE21 0003/0003 2025-10-21T15:46:42.050401 codethink04-arm64 UNK_CLIENT UNK_SESSION blastfilter_unit_test request-start test_name=TSeqLocVector2Packed_seqint_TestIntervals&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -385612/000/0001/RE EE38E24C8F7AAE21 0004/0004 2025-10-21T15:46:42.052264 codethink04-arm64 UNK_CLIENT UNK_SESSION blastfilter_unit_test request-stop 200 0.001863956 0 0 -385612/000/0002/RB EE38E24C8F7AAE21 0005/0005 2025-10-21T15:46:42.052656 codethink04-arm64 UNK_CLIENT UNK_SESSION blastfilter_unit_test request-start test_name=TSeqLocVector2Packed_seqint_TestNoIntervals&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -385612/000/0002/R EE38E24C8F7AAE21 0006/0006 2025-10-21T15:46:42.052783 codethink04-arm64 UNK_CLIENT UNK_SESSION blastfilter_unit_test extra ncbi_phid=EE38E24C8F7AAE210000000000020001 -385612/000/0002/R EE38E24C8F7AAE21 0007/0007 2025-10-21T15:46:42.052821 codethink04-arm64 UNK_CLIENT UNK_SESSION blastfilter_unit_test extra issued_subhit=1 -385612/000/0002/R EE38E24C8F7AAE21 0008/0008 2025-10-21T15:46:42.053259 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=2 -385612/000/0002/R EE38E24C8F7AAE21 0009/0009 2025-10-21T15:46:42.053398 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -385612/000/0002/R EE38E24C8F7AAE21 0010/0010 2025-10-21T15:46:42.053424 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0011/0011 2025-10-21T15:46:42.053441 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -385612/000/0002/R EE38E24C8F7AAE21 0012/0012 2025-10-21T15:46:42.053452 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -385612/000/0002/R EE38E24C8F7AAE21 0013/0013 2025-10-21T15:46:42.053463 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0014/0014 2025-10-21T15:46:42.053690 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=3 -385612/000/0002/R EE38E24C8F7AAE21 0015/0015 2025-10-21T15:46:42.053909 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=4 -385612/000/0002/R EE38E24C8F7AAE21 0016/0016 2025-10-21T15:46:42.054021 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -385612/000/0002/R EE38E24C8F7AAE21 0017/0017 2025-10-21T15:46:42.054034 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0018/0018 2025-10-21T15:46:42.054044 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -385612/000/0002/R EE38E24C8F7AAE21 0019/0019 2025-10-21T15:46:42.054053 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -385612/000/0002/R EE38E24C8F7AAE21 0020/0020 2025-10-21T15:46:42.054062 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0021/0021 2025-10-21T15:46:42.054130 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=5 -385612/000/0002/R EE38E24C8F7AAE21 0022/0022 2025-10-21T15:46:43.054879 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=6 -385612/000/0002/R EE38E24C8F7AAE21 0023/0023 2025-10-21T15:46:43.055126 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -385612/000/0002/R EE38E24C8F7AAE21 0024/0024 2025-10-21T15:46:43.055163 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0025/0025 2025-10-21T15:46:43.055224 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -385612/000/0002/R EE38E24C8F7AAE21 0026/0026 2025-10-21T15:46:43.055253 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -385612/000/0002/R EE38E24C8F7AAE21 0027/0027 2025-10-21T15:46:43.055278 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0028/0028 2025-10-21T15:46:43.055503 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=7 -385612/000/0002/R EE38E24C8F7AAE21 0029/0029 2025-10-21T15:46:45.555942 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=8 -385612/000/0002/R EE38E24C8F7AAE21 0030/0030 2025-10-21T15:46:45.556096 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -385612/000/0002/R EE38E24C8F7AAE21 0031/0031 2025-10-21T15:46:45.556112 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0032/0032 2025-10-21T15:46:45.556125 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -385612/000/0002/R EE38E24C8F7AAE21 0033/0033 2025-10-21T15:46:45.556137 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -385612/000/0002/R EE38E24C8F7AAE21 0034/0034 2025-10-21T15:46:45.556149 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0035/0035 2025-10-21T15:46:45.556267 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=9 -385612/000/0002/R EE38E24C8F7AAE21 0036/0036 2025-10-21T15:46:50.306673 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=10 -385612/000/0002/R EE38E24C8F7AAE21 0037/0037 2025-10-21T15:46:50.306819 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -385612/000/0002/R EE38E24C8F7AAE21 0038/0038 2025-10-21T15:46:50.306835 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0039/0039 2025-10-21T15:46:50.306847 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -385612/000/0002/R EE38E24C8F7AAE21 0040/0040 2025-10-21T15:46:50.306857 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -385612/000/0002/R EE38E24C8F7AAE21 0041/0041 2025-10-21T15:46:50.306867 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0042/0042 2025-10-21T15:46:50.307040 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=11 -385612/000/0002/R EE38E24C8F7AAE21 0043/0043 2025-10-21T15:46:58.432454 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=12 -385612/000/0002/R EE38E24C8F7AAE21 0044/0044 2025-10-21T15:46:58.432617 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -385612/000/0002/R EE38E24C8F7AAE21 0045/0045 2025-10-21T15:46:58.432635 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0046/0046 2025-10-21T15:46:58.432648 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -385612/000/0002/R EE38E24C8F7AAE21 0047/0047 2025-10-21T15:46:58.432659 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -385612/000/0002/R EE38E24C8F7AAE21 0048/0048 2025-10-21T15:46:58.432669 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0049/0049 2025-10-21T15:46:58.432783 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=13 -385612/000/0002/R EE38E24C8F7AAE21 0050/0050 2025-10-21T15:47:11.620810 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=14 -385612/000/0002/R EE38E24C8F7AAE21 0051/0051 2025-10-21T15:47:11.620963 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -385612/000/0002/R EE38E24C8F7AAE21 0052/0052 2025-10-21T15:47:11.620980 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0053/0053 2025-10-21T15:47:11.620992 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -385612/000/0002/R EE38E24C8F7AAE21 0054/0054 2025-10-21T15:47:11.621002 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -385612/000/0002/R EE38E24C8F7AAE21 0055/0055 2025-10-21T15:47:11.621013 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0056/0056 2025-10-21T15:47:11.621131 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=15 -385612/000/0002/R EE38E24C8F7AAE21 0057/0057 2025-10-21T15:47:32.402802 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=16 -385612/000/0002/R EE38E24C8F7AAE21 0058/0058 2025-10-21T15:47:32.402960 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -385612/000/0002/R EE38E24C8F7AAE21 0059/0059 2025-10-21T15:47:32.402977 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0060/0060 2025-10-21T15:47:32.402990 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -385612/000/0002/R EE38E24C8F7AAE21 0061/0061 2025-10-21T15:47:32.403001 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -385612/000/0002/R EE38E24C8F7AAE21 0062/0062 2025-10-21T15:47:32.403013 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0063/0063 2025-10-21T15:47:32.403132 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=17 -385612/000/0002/R EE38E24C8F7AAE21 0064/0064 2025-10-21T15:48:02.403546 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=18 -385612/000/0002/R EE38E24C8F7AAE21 0065/0065 2025-10-21T15:48:02.403695 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -385612/000/0002/R EE38E24C8F7AAE21 0066/0066 2025-10-21T15:48:02.403710 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0067/0067 2025-10-21T15:48:02.403722 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -385612/000/0002/R EE38E24C8F7AAE21 0068/0068 2025-10-21T15:48:02.403733 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -385612/000/0002/R EE38E24C8F7AAE21 0069/0069 2025-10-21T15:48:02.403743 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0070/0070 2025-10-21T15:48:02.403857 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=19 -385612/000/0002/R EE38E24C8F7AAE21 0071/0071 2025-10-21T15:48:32.404643 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=20 -385612/000/0002/R EE38E24C8F7AAE21 0072/0072 2025-10-21T15:48:32.404901 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -385612/000/0002/R EE38E24C8F7AAE21 0073/0073 2025-10-21T15:48:32.404935 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0074/0074 2025-10-21T15:48:32.404966 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -385612/000/0002/R EE38E24C8F7AAE21 0075/0075 2025-10-21T15:48:32.404993 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -385612/000/0002/R EE38E24C8F7AAE21 0076/0076 2025-10-21T15:48:32.405017 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0077/0077 2025-10-21T15:48:32.405290 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=21 -385612/000/0002/R EE38E24C8F7AAE21 0078/0078 2025-10-21T15:49:02.406053 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=22 -385612/000/0002/R EE38E24C8F7AAE21 0079/0079 2025-10-21T15:49:02.406302 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -385612/000/0002/R EE38E24C8F7AAE21 0080/0080 2025-10-21T15:49:02.406358 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0081/0081 2025-10-21T15:49:02.406387 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -385612/000/0002/R EE38E24C8F7AAE21 0082/0082 2025-10-21T15:49:02.406414 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -385612/000/0002/R EE38E24C8F7AAE21 0083/0083 2025-10-21T15:49:02.406439 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0084/0084 2025-10-21T15:49:02.406654 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=23 -385612/000/0002/R EE38E24C8F7AAE21 0085/0085 2025-10-21T15:49:32.407461 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=24 -385612/000/0002/R EE38E24C8F7AAE21 0086/0086 2025-10-21T15:49:32.407722 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -385612/000/0002/R EE38E24C8F7AAE21 0087/0087 2025-10-21T15:49:32.407758 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0088/0088 2025-10-21T15:49:32.407788 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -385612/000/0002/R EE38E24C8F7AAE21 0089/0089 2025-10-21T15:49:32.407815 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -385612/000/0002/R EE38E24C8F7AAE21 0090/0090 2025-10-21T15:49:32.407839 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -385612/000/0002/R EE38E24C8F7AAE21 0091/0091 2025-10-21T15:49:32.408063 codethink04-arm64 UNK_CLIENT EE38E24C8F7AAE21_0002SID blastfilter_unit_test extra issued_subhit=25 - -Maximum execution time of 200 second(s) is exceeded - -real 200.16 -user 0.15 -sys 0.06 -Start time : 10/21/2025 15:46:41 -Stop time : 10/21/2025 15:50:02 -Load averages: 3.87 6.24 7.71 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -blastoptions_unit_test -====================================================================== - -425379/000/0000/PB EE387DA38F7ABAA1 0001/0001 2025-10-21T15:50:02.276657 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/blastoptions_unit_test -425379/000/0000/PB EE387DA38F7ABAA1 0002/0002 2025-10-21T15:50:02.277009 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/blastoptions_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 28 test cases... -425379/000/0001/RB EE387DA38F7ABAA1 0003/0003 2025-10-21T15:50:02.281775 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-start test_name=TestTasksDefinitionsAndDocumentation&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -425379/000/0001/RE EE387DA38F7ABAA1 0004/0004 2025-10-21T15:50:02.284539 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-stop 200 0.002762079 0 0 -425379/000/0002/RB EE387DA38F7ABAA1 0005/0005 2025-10-21T15:50:02.285558 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-start test_name=RemoteOptionsTest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -425379/000/0002/RE EE387DA38F7ABAA1 0006/0006 2025-10-21T15:50:02.285976 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-stop 200 0.000424861 0 0 -425379/000/0003/RB EE387DA38F7ABAA1 0007/0007 2025-10-21T15:50:02.286936 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-start test_name=BogusProgramWithCreate&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -425379/000/0003/RE EE387DA38F7ABAA1 0008/0008 2025-10-21T15:50:02.288473 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-stop 200 0.001539945 0 0 -425379/000/0004/RB EE387DA38F7ABAA1 0009/0009 2025-10-21T15:50:02.289253 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-start test_name=UnifiedPOptionsTest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -425379/000/0004/RE EE387DA38F7ABAA1 0010/0010 2025-10-21T15:50:02.289609 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-stop 200 0.000358819 0 0 -425379/000/0005/RB EE387DA38F7ABAA1 0011/0011 2025-10-21T15:50:02.290192 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-start test_name=GetSuggestedThresholdTest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -425379/000/0005/RE EE387DA38F7ABAA1 0012/0012 2025-10-21T15:50:02.290518 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-stop 200 0.000327825 0 0 -425379/000/0006/RB EE387DA38F7ABAA1 0013/0013 2025-10-21T15:50:02.291344 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-start test_name=GetSuggestedWindowSizeTest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -425379/000/0006/RE EE387DA38F7ABAA1 0014/0014 2025-10-21T15:50:02.291408 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-stop 200 0.000072002 0 0 -425379/000/0007/RB EE387DA38F7ABAA1 0015/0015 2025-10-21T15:50:02.291952 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-start test_name=GetProteinGapExistenceExtendParamsTest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -425379/000/0007/RE EE387DA38F7ABAA1 0016/0016 2025-10-21T15:50:02.292027 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-stop 200 0.000080823 0 0 -425379/000/0008/RB EE387DA38F7ABAA1 0017/0017 2025-10-21T15:50:02.292820 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-start test_name=GetNucleotideGapExistenceExtendParamsTest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -425379/000/0008/RE EE387DA38F7ABAA1 0018/0018 2025-10-21T15:50:02.293125 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-stop 200 0.000307083 0 0 -425379/000/0009/RB EE387DA38F7ABAA1 0019/0019 2025-10-21T15:50:02.293907 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-start test_name=FilterSetUpOptionsDustTest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -425379/000/0009/RE EE387DA38F7ABAA1 0020/0020 2025-10-21T15:50:02.293960 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-stop 200 0.000059127 0 0 -425379/000/0010/RB EE387DA38F7ABAA1 0021/0021 2025-10-21T15:50:02.294521 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-start test_name=FilterSetUpOptionsSegTest&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -425379/000/0010/RE EE387DA38F7ABAA1 0022/0022 2025-10-21T15:50:02.294571 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-stop 200 0.000056028 0 0 -425379/000/0011/RB EE387DA38F7ABAA1 0023/0023 2025-10-21T15:50:02.295360 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-start test_name=FilterSetUpOptionsNULLInput&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -425379/000/0011/RE EE387DA38F7ABAA1 0024/0024 2025-10-21T15:50:02.295405 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-stop 200 0.000050783 0 0 -425379/000/0012/RB EE387DA38F7ABAA1 0025/0025 2025-10-21T15:50:02.295929 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-start test_name=OptionsFreeNULLInput&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -425379/000/0012/RE EE387DA38F7ABAA1 0026/0026 2025-10-21T15:50:02.296210 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-stop 200 0.000277042 0 0 -425379/000/0013/RB EE387DA38F7ABAA1 0027/0027 2025-10-21T15:50:02.296977 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test request-start test_name=testCalcLinkHSPCutoffs&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -425379/000/0013/R EE387DA38F7ABAA1 0028/0028 2025-10-21T15:50:02.298658 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test extra ncbi_phid=EE387DA38F7ABAA100000000000D0001 -425379/000/0013/R EE387DA38F7ABAA1 0029/0029 2025-10-21T15:50:02.298713 codethink04-arm64 UNK_CLIENT UNK_SESSION blastoptions_unit_test extra issued_subhit=1 -425379/000/0013/R EE387DA38F7ABAA1 0030/0030 2025-10-21T15:50:02.299720 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=2 -425379/000/0013/R EE387DA38F7ABAA1 0031/0031 2025-10-21T15:50:02.299970 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -425379/000/0013/R EE387DA38F7ABAA1 0032/0032 2025-10-21T15:50:02.300029 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0033/0033 2025-10-21T15:50:02.300064 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -425379/000/0013/R EE387DA38F7ABAA1 0034/0034 2025-10-21T15:50:02.300090 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -425379/000/0013/R EE387DA38F7ABAA1 0035/0035 2025-10-21T15:50:02.300120 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0036/0036 2025-10-21T15:50:02.300385 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=3 -425379/000/0013/R EE387DA38F7ABAA1 0037/0037 2025-10-21T15:50:02.300918 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=4 -425379/000/0013/R EE387DA38F7ABAA1 0038/0038 2025-10-21T15:50:02.301111 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -425379/000/0013/R EE387DA38F7ABAA1 0039/0039 2025-10-21T15:50:02.301145 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0040/0040 2025-10-21T15:50:02.301179 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -425379/000/0013/R EE387DA38F7ABAA1 0041/0041 2025-10-21T15:50:02.301208 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -425379/000/0013/R EE387DA38F7ABAA1 0042/0042 2025-10-21T15:50:02.301231 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0043/0043 2025-10-21T15:50:02.301397 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=5 -425379/000/0013/R EE387DA38F7ABAA1 0044/0044 2025-10-21T15:50:03.302161 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=6 -425379/000/0013/R EE387DA38F7ABAA1 0045/0045 2025-10-21T15:50:03.302426 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -425379/000/0013/R EE387DA38F7ABAA1 0046/0046 2025-10-21T15:50:03.302464 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0047/0047 2025-10-21T15:50:03.302494 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -425379/000/0013/R EE387DA38F7ABAA1 0048/0048 2025-10-21T15:50:03.302519 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -425379/000/0013/R EE387DA38F7ABAA1 0049/0049 2025-10-21T15:50:03.302557 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0050/0050 2025-10-21T15:50:03.302791 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=7 -425379/000/0013/R EE387DA38F7ABAA1 0051/0051 2025-10-21T15:50:05.803616 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=8 -425379/000/0013/R EE387DA38F7ABAA1 0052/0052 2025-10-21T15:50:05.803849 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -425379/000/0013/R EE387DA38F7ABAA1 0053/0053 2025-10-21T15:50:05.803887 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0054/0054 2025-10-21T15:50:05.803921 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -425379/000/0013/R EE387DA38F7ABAA1 0055/0055 2025-10-21T15:50:05.803949 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -425379/000/0013/R EE387DA38F7ABAA1 0056/0056 2025-10-21T15:50:05.803975 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0057/0057 2025-10-21T15:50:05.804199 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=9 -425379/000/0013/R EE387DA38F7ABAA1 0058/0058 2025-10-21T15:50:10.554903 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=10 -425379/000/0013/R EE387DA38F7ABAA1 0059/0059 2025-10-21T15:50:10.555121 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -425379/000/0013/R EE387DA38F7ABAA1 0060/0060 2025-10-21T15:50:10.555153 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0061/0061 2025-10-21T15:50:10.555184 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -425379/000/0013/R EE387DA38F7ABAA1 0062/0062 2025-10-21T15:50:10.555245 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -425379/000/0013/R EE387DA38F7ABAA1 0063/0063 2025-10-21T15:50:10.555290 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0064/0064 2025-10-21T15:50:10.555570 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=11 -425379/000/0013/R EE387DA38F7ABAA1 0065/0065 2025-10-21T15:50:18.681178 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=12 -425379/000/0013/R EE387DA38F7ABAA1 0066/0066 2025-10-21T15:50:18.681393 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -425379/000/0013/R EE387DA38F7ABAA1 0067/0067 2025-10-21T15:50:18.681421 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0068/0068 2025-10-21T15:50:18.681445 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -425379/000/0013/R EE387DA38F7ABAA1 0069/0069 2025-10-21T15:50:18.681465 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -425379/000/0013/R EE387DA38F7ABAA1 0070/0070 2025-10-21T15:50:18.681484 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0071/0071 2025-10-21T15:50:18.681658 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=13 -425379/000/0013/R EE387DA38F7ABAA1 0072/0072 2025-10-21T15:50:31.869974 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=14 -425379/000/0013/R EE387DA38F7ABAA1 0073/0073 2025-10-21T15:50:31.870217 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -425379/000/0013/R EE387DA38F7ABAA1 0074/0074 2025-10-21T15:50:31.870255 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0075/0075 2025-10-21T15:50:31.870292 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -425379/000/0013/R EE387DA38F7ABAA1 0076/0076 2025-10-21T15:50:31.870319 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -425379/000/0013/R EE387DA38F7ABAA1 0077/0077 2025-10-21T15:50:31.870384 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0078/0078 2025-10-21T15:50:31.870605 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=15 -425379/000/0013/R EE387DA38F7ABAA1 0079/0079 2025-10-21T15:50:52.652601 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=16 -425379/000/0013/R EE387DA38F7ABAA1 0080/0080 2025-10-21T15:50:52.652837 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -425379/000/0013/R EE387DA38F7ABAA1 0081/0081 2025-10-21T15:50:52.652877 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0082/0082 2025-10-21T15:50:52.652913 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -425379/000/0013/R EE387DA38F7ABAA1 0083/0083 2025-10-21T15:50:52.652942 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -425379/000/0013/R EE387DA38F7ABAA1 0084/0084 2025-10-21T15:50:52.652967 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0085/0085 2025-10-21T15:50:52.653193 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=17 -425379/000/0013/R EE387DA38F7ABAA1 0086/0086 2025-10-21T15:51:22.653974 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=18 -425379/000/0013/R EE387DA38F7ABAA1 0087/0087 2025-10-21T15:51:22.654221 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -425379/000/0013/R EE387DA38F7ABAA1 0088/0088 2025-10-21T15:51:22.654260 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0089/0089 2025-10-21T15:51:22.654296 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -425379/000/0013/R EE387DA38F7ABAA1 0090/0090 2025-10-21T15:51:22.654356 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -425379/000/0013/R EE387DA38F7ABAA1 0091/0091 2025-10-21T15:51:22.654384 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0092/0092 2025-10-21T15:51:22.654610 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=19 -425379/000/0013/R EE387DA38F7ABAA1 0093/0093 2025-10-21T15:51:52.655210 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=20 -425379/000/0013/R EE387DA38F7ABAA1 0094/0094 2025-10-21T15:51:52.655377 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -425379/000/0013/R EE387DA38F7ABAA1 0095/0095 2025-10-21T15:51:52.655398 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0096/0096 2025-10-21T15:51:52.655415 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -425379/000/0013/R EE387DA38F7ABAA1 0097/0097 2025-10-21T15:51:52.655429 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -425379/000/0013/R EE387DA38F7ABAA1 0098/0098 2025-10-21T15:51:52.655443 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0099/0099 2025-10-21T15:51:52.656385 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=21 -425379/000/0013/R EE387DA38F7ABAA1 0100/0100 2025-10-21T15:52:22.656784 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=22 -425379/000/0013/R EE387DA38F7ABAA1 0101/0101 2025-10-21T15:52:22.656919 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -425379/000/0013/R EE387DA38F7ABAA1 0102/0102 2025-10-21T15:52:22.656936 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0103/0103 2025-10-21T15:52:22.656949 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -425379/000/0013/R EE387DA38F7ABAA1 0104/0104 2025-10-21T15:52:22.656965 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -425379/000/0013/R EE387DA38F7ABAA1 0105/0105 2025-10-21T15:52:22.656975 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0106/0106 2025-10-21T15:52:22.657096 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=23 -425379/000/0013/R EE387DA38F7ABAA1 0107/0107 2025-10-21T15:52:52.657874 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=24 -425379/000/0013/R EE387DA38F7ABAA1 0108/0108 2025-10-21T15:52:52.658120 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -425379/000/0013/R EE387DA38F7ABAA1 0109/0109 2025-10-21T15:52:52.658159 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0110/0110 2025-10-21T15:52:52.658198 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -425379/000/0013/R EE387DA38F7ABAA1 0111/0111 2025-10-21T15:52:52.658226 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -425379/000/0013/R EE387DA38F7ABAA1 0112/0112 2025-10-21T15:52:52.658251 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -425379/000/0013/R EE387DA38F7ABAA1 0113/0113 2025-10-21T15:52:52.658508 codethink04-arm64 UNK_CLIENT EE387DA38F7ABAA1_0013SID blastoptions_unit_test extra issued_subhit=25 - -Maximum execution time of 200 second(s) is exceeded - -real 200.16 -user 0.20 -sys 0.08 -Start time : 10/21/2025 15:50:02 -Stop time : 10/21/2025 15:53:22 -Load averages: 4.68 5.16 6.96 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -bl2seq_unit_test -====================================================================== - -482822/000/0000/PB EE385E068F7AC721 0001/0001 2025-10-21T15:53:22.644554 codethink04-arm64 UNK_CLIENT UNK_SESSION bl2seq_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/bl2seq_unit_test -482822/000/0000/PB EE385E068F7AC721 0002/0002 2025-10-21T15:53:22.644727 codethink04-arm64 UNK_CLIENT UNK_SESSION bl2seq_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/bl2seq_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 85 test cases... -482822/000/0001/RB EE385E068F7AC721 0003/0003 2025-10-21T15:53:22.647365 codethink04-arm64 UNK_CLIENT UNK_SESSION bl2seq_unit_test request-start test_name=NucleotideMultipleSeqLocs1&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -482822/000/0001/R EE385E068F7AC721 0004/0004 2025-10-21T15:53:22.649599 codethink04-arm64 UNK_CLIENT UNK_SESSION bl2seq_unit_test extra ncbi_phid=EE385E068F7AC7210000000000010001 -482822/000/0001/R EE385E068F7AC721 0005/0005 2025-10-21T15:53:22.649630 codethink04-arm64 UNK_CLIENT UNK_SESSION bl2seq_unit_test extra issued_subhit=1 -482822/000/0001/R EE385E068F7AC721 0006/0006 2025-10-21T15:53:22.650070 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test extra issued_subhit=2 -482822/000/0001/R EE385E068F7AC721 0007/0007 2025-10-21T15:53:22.650199 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -482822/000/0001/R EE385E068F7AC721 0008/0008 2025-10-21T15:53:22.650227 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -482822/000/0001/R EE385E068F7AC721 0009/0009 2025-10-21T15:53:22.650243 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -482822/000/0001/R EE385E068F7AC721 0010/0010 2025-10-21T15:53:22.650254 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -482822/000/0001/R EE385E068F7AC721 0011/0011 2025-10-21T15:53:22.650264 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -482822/000/0001/R EE385E068F7AC721 0012/0012 2025-10-21T15:53:22.651009 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test extra issued_subhit=3 -482822/000/0001/R EE385E068F7AC721 0013/0013 2025-10-21T15:53:22.651259 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test extra issued_subhit=4 -482822/000/0001/R EE385E068F7AC721 0014/0014 2025-10-21T15:53:22.651362 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -482822/000/0001/R EE385E068F7AC721 0015/0015 2025-10-21T15:53:22.651376 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -482822/000/0001/R EE385E068F7AC721 0016/0016 2025-10-21T15:53:22.651393 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -482822/000/0001/R EE385E068F7AC721 0017/0017 2025-10-21T15:53:22.651403 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -482822/000/0001/R EE385E068F7AC721 0018/0018 2025-10-21T15:53:22.651413 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -482822/000/0001/R EE385E068F7AC721 0019/0019 2025-10-21T15:53:22.651491 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test extra issued_subhit=5 -482822/000/0001/R EE385E068F7AC721 0020/0020 2025-10-21T15:53:23.651892 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test extra issued_subhit=6 -482822/000/0001/R EE385E068F7AC721 0021/0021 2025-10-21T15:53:23.652032 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -482822/000/0001/R EE385E068F7AC721 0022/0022 2025-10-21T15:53:23.652049 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -482822/000/0001/R EE385E068F7AC721 0023/0023 2025-10-21T15:53:23.652060 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -482822/000/0001/R EE385E068F7AC721 0024/0024 2025-10-21T15:53:23.652070 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -482822/000/0001/R EE385E068F7AC721 0025/0025 2025-10-21T15:53:23.652081 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -482822/000/0001/R EE385E068F7AC721 0026/0026 2025-10-21T15:53:23.652209 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test extra issued_subhit=7 -482822/000/0001/R EE385E068F7AC721 0027/0027 2025-10-21T15:53:26.153006 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test extra issued_subhit=8 -482822/000/0001/R EE385E068F7AC721 0028/0028 2025-10-21T15:53:26.153153 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -482822/000/0001/R EE385E068F7AC721 0029/0029 2025-10-21T15:53:26.153171 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -482822/000/0001/R EE385E068F7AC721 0030/0030 2025-10-21T15:53:26.153191 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -482822/000/0001/R EE385E068F7AC721 0031/0031 2025-10-21T15:53:26.153202 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -482822/000/0001/R EE385E068F7AC721 0032/0032 2025-10-21T15:53:26.153212 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -482822/000/0001/R EE385E068F7AC721 0033/0033 2025-10-21T15:53:26.153341 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test extra issued_subhit=9 -482822/000/0001/R EE385E068F7AC721 0034/0034 2025-10-21T15:53:30.903770 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test extra issued_subhit=10 -482822/000/0001/R EE385E068F7AC721 0035/0035 2025-10-21T15:53:30.903917 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -482822/000/0001/R EE385E068F7AC721 0036/0036 2025-10-21T15:53:30.903933 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -482822/000/0001/R EE385E068F7AC721 0037/0037 2025-10-21T15:53:30.903945 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -482822/000/0001/R EE385E068F7AC721 0038/0038 2025-10-21T15:53:30.903956 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -482822/000/0001/R EE385E068F7AC721 0039/0039 2025-10-21T15:53:30.903966 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -482822/000/0001/R EE385E068F7AC721 0043/0043 2025-10-21T15:53:30.905061 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: BLAST(CBlastException::eInvalid) "local_db_adapter.cpp", line 120: ncbi::blast::s_CheckForBlastSeqSrcErrors() --- NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL Error: BLAST(CLoaderException::eConnectionFailed) "./c++/src/algo/blast/api/blast_setup_cxx.cpp", line 797: ncbi::blast::SetupSubjects_OMF() --- failed to send request: NULL (in GetRecords(gi|262050671)) -482822/000/0001/R EE385E068F7AC721 0044/0044 2025-10-21T15:53:30.905092 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test Error: BLAST "bl2seq_unit_test.cpp", line 94: bl2seq::NucleotideMultipleSeqLocs1_invoker() --- Uncaught exception in "NucleotideMultipleSeqLocs1"(CBlastException::eInvalid) NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL Error: BLAST(CLoaderException::eConnectionFailed) "./c++/src/algo/blast/api/blast_setup_cxx.cpp", line 797: ncbi::blast::SetupSubjects_OMF() --- failed to send request: NULL (in GetRecords(gi|262050671)) -482822/000/0001/RE EE385E068F7AC721 0046/0046 2025-10-21T15:53:30.905143 codethink04-arm64 UNK_CLIENT EE385E068F7AC721_0001SID bl2seq_unit_test request-stop 500 8.257793188 0 0 -unknown location(0): fatal error: in "bl2seq/NucleotideMultipleSeqLocs1": NCBI C++ Exception: - Error: BLAST(CBlastException::eInvalid) "./c++/src/algo/blast/api/local_db_adapter.cpp", line 120: ncbi::blast::s_CheckForBlastSeqSrcErrors() --- NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 253: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eConnectionFailed) "./c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp", line 2137: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL Error: BLAST(CLoaderException::eConnectionFailed) "./c++/src/algo/blast/api/blast_setup_cxx.cpp", line 797: ncbi::blast::SetupSubjects_OMF() --- failed to send request: NULL (in GetRecords(gi|262050671)) - -./c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp(94): last checkpoint: "NucleotideMultipleSeqLocs1" entry. -482822/000/0002/RB EE385E068F7AC721 0047/0047 2025-10-21T15:53:30.905868 codethink04-arm64 UNK_CLIENT UNK_SESSION bl2seq_unit_test request-start test_name=ProteinBlastInvalidSeqIdSelfHit&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -482822/000/0002/R EE385E068F7AC721 0048/0048 2025-10-21T15:53:30.906221 codethink04-arm64 UNK_CLIENT UNK_SESSION bl2seq_unit_test extra ncbi_phid=EE385E068F7AC7210000000000020002 -482822/000/0002/R EE385E068F7AC721 0049/0049 2025-10-21T15:53:30.906240 codethink04-arm64 UNK_CLIENT UNK_SESSION bl2seq_unit_test extra issued_subhit=1 -482822/000/0002/R EE385E068F7AC721 0050/0050 2025-10-21T15:53:39.031654 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test extra issued_subhit=2 -482822/000/0002/R EE385E068F7AC721 0051/0051 2025-10-21T15:53:39.031801 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -482822/000/0002/R EE385E068F7AC721 0052/0052 2025-10-21T15:53:39.031816 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -482822/000/0002/R EE385E068F7AC721 0053/0053 2025-10-21T15:53:39.031828 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -482822/000/0002/R EE385E068F7AC721 0054/0054 2025-10-21T15:53:39.031839 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -482822/000/0002/R EE385E068F7AC721 0055/0055 2025-10-21T15:53:39.031855 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -482822/000/0002/R EE385E068F7AC721 0056/0056 2025-10-21T15:53:39.031980 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test extra issued_subhit=3 -482822/000/0002/R EE385E068F7AC721 0057/0057 2025-10-21T15:53:52.219907 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test extra issued_subhit=4 -482822/000/0002/R EE385E068F7AC721 0058/0058 2025-10-21T15:53:52.220052 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -482822/000/0002/R EE385E068F7AC721 0059/0059 2025-10-21T15:53:52.220068 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -482822/000/0002/R EE385E068F7AC721 0060/0060 2025-10-21T15:53:52.220079 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -482822/000/0002/R EE385E068F7AC721 0061/0061 2025-10-21T15:53:52.220091 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -482822/000/0002/R EE385E068F7AC721 0062/0062 2025-10-21T15:53:52.220102 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -482822/000/0002/R EE385E068F7AC721 0063/0063 2025-10-21T15:53:52.220227 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test extra issued_subhit=5 -482822/000/0002/R EE385E068F7AC721 0064/0064 2025-10-21T15:54:13.001915 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test extra issued_subhit=6 -482822/000/0002/R EE385E068F7AC721 0065/0065 2025-10-21T15:54:13.002063 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -482822/000/0002/R EE385E068F7AC721 0066/0066 2025-10-21T15:54:13.002080 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -482822/000/0002/R EE385E068F7AC721 0067/0067 2025-10-21T15:54:13.002093 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -482822/000/0002/R EE385E068F7AC721 0068/0068 2025-10-21T15:54:13.002105 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -482822/000/0002/R EE385E068F7AC721 0069/0069 2025-10-21T15:54:13.002124 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -482822/000/0002/R EE385E068F7AC721 0070/0070 2025-10-21T15:54:13.002254 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test extra issued_subhit=7 -482822/000/0002/R EE385E068F7AC721 0071/0071 2025-10-21T15:54:43.002703 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test extra issued_subhit=8 -482822/000/0002/R EE385E068F7AC721 0072/0072 2025-10-21T15:54:43.002867 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -482822/000/0002/R EE385E068F7AC721 0073/0073 2025-10-21T15:54:43.002884 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -482822/000/0002/R EE385E068F7AC721 0074/0074 2025-10-21T15:54:43.002896 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -482822/000/0002/R EE385E068F7AC721 0075/0075 2025-10-21T15:54:43.002907 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -482822/000/0002/R EE385E068F7AC721 0076/0076 2025-10-21T15:54:43.002918 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -482822/000/0002/R EE385E068F7AC721 0077/0077 2025-10-21T15:54:43.003051 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test extra issued_subhit=9 -482822/000/0002/R EE385E068F7AC721 0078/0078 2025-10-21T15:55:13.003957 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test extra issued_subhit=10 -482822/000/0002/R EE385E068F7AC721 0079/0079 2025-10-21T15:55:13.004196 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -482822/000/0002/R EE385E068F7AC721 0080/0080 2025-10-21T15:55:13.004230 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -482822/000/0002/R EE385E068F7AC721 0081/0081 2025-10-21T15:55:13.004259 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -482822/000/0002/R EE385E068F7AC721 0082/0082 2025-10-21T15:55:13.004286 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -482822/000/0002/R EE385E068F7AC721 0083/0083 2025-10-21T15:55:13.004322 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -482822/000/0002/RE EE385E068F7AC721 0087/0087 2025-10-21T15:55:13.004913 codethink04-arm64 UNK_CLIENT EE385E068F7AC831_0002SID bl2seq_unit_test request-stop 200 102.099048852 0 0 -482822/000/0003/RB EE385E068F7AC721 0088/0088 2025-10-21T15:55:13.006185 codethink04-arm64 UNK_CLIENT UNK_SESSION bl2seq_unit_test request-start test_name=ProteinBlastSelfHit&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -482822/000/0003/R EE385E068F7AC721 0089/0089 2025-10-21T15:55:13.006744 codethink04-arm64 UNK_CLIENT UNK_SESSION bl2seq_unit_test extra ncbi_phid=EE385E068F7AC7210000000000030003 -482822/000/0003/R EE385E068F7AC721 0090/0090 2025-10-21T15:55:13.006782 codethink04-arm64 UNK_CLIENT UNK_SESSION bl2seq_unit_test extra issued_subhit=1 -482822/000/0003/R EE385E068F7AC721 0091/0091 2025-10-21T15:55:43.007662 codethink04-arm64 UNK_CLIENT EE385E068F7ACFF1_0003SID bl2seq_unit_test extra issued_subhit=2 -482822/000/0003/R EE385E068F7AC721 0092/0092 2025-10-21T15:55:43.007927 codethink04-arm64 UNK_CLIENT EE385E068F7ACFF1_0003SID bl2seq_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -482822/000/0003/R EE385E068F7AC721 0093/0093 2025-10-21T15:55:43.007964 codethink04-arm64 UNK_CLIENT EE385E068F7ACFF1_0003SID bl2seq_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -482822/000/0003/R EE385E068F7AC721 0094/0094 2025-10-21T15:55:43.007994 codethink04-arm64 UNK_CLIENT EE385E068F7ACFF1_0003SID bl2seq_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -482822/000/0003/R EE385E068F7AC721 0095/0095 2025-10-21T15:55:43.008022 codethink04-arm64 UNK_CLIENT EE385E068F7ACFF1_0003SID bl2seq_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -482822/000/0003/R EE385E068F7AC721 0096/0096 2025-10-21T15:55:43.008048 codethink04-arm64 UNK_CLIENT EE385E068F7ACFF1_0003SID bl2seq_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -482822/000/0003/R EE385E068F7AC721 0097/0097 2025-10-21T15:55:43.008279 codethink04-arm64 UNK_CLIENT EE385E068F7ACFF1_0003SID bl2seq_unit_test extra issued_subhit=3 -482822/000/0003/R EE385E068F7AC721 0098/0098 2025-10-21T15:56:13.008720 codethink04-arm64 UNK_CLIENT EE385E068F7ACFF1_0003SID bl2seq_unit_test extra issued_subhit=4 -482822/000/0003/R EE385E068F7AC721 0099/0099 2025-10-21T15:56:13.008861 codethink04-arm64 UNK_CLIENT EE385E068F7ACFF1_0003SID bl2seq_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -482822/000/0003/R EE385E068F7AC721 0100/0100 2025-10-21T15:56:13.008878 codethink04-arm64 UNK_CLIENT EE385E068F7ACFF1_0003SID bl2seq_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -482822/000/0003/R EE385E068F7AC721 0101/0101 2025-10-21T15:56:13.008897 codethink04-arm64 UNK_CLIENT EE385E068F7ACFF1_0003SID bl2seq_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -482822/000/0003/R EE385E068F7AC721 0102/0102 2025-10-21T15:56:13.008909 codethink04-arm64 UNK_CLIENT EE385E068F7ACFF1_0003SID bl2seq_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -482822/000/0003/R EE385E068F7AC721 0103/0103 2025-10-21T15:56:13.008920 codethink04-arm64 UNK_CLIENT EE385E068F7ACFF1_0003SID bl2seq_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -482822/000/0003/R EE385E068F7AC721 0104/0104 2025-10-21T15:56:13.009038 codethink04-arm64 UNK_CLIENT EE385E068F7ACFF1_0003SID bl2seq_unit_test extra issued_subhit=5 - -Maximum execution time of 200 second(s) is exceeded - -real 200.14 -user 0.15 -sys 0.06 -Start time : 10/21/2025 15:53:22 -Stop time : 10/21/2025 15:56:42 -Load averages: 6.89 5.94 6.96 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 - - -====================================================================== -rmblast_traceback_unit_test -====================================================================== - -584070/000/0000/PB EE38E9868F7AD401 0001/0001 2025-10-21T15:56:48.828597 codethink04-arm64 UNK_CLIENT UNK_SESSION rmblast_traceback_unit_test start /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/rmblast_traceback_unit_test -584070/000/0000/PB EE38E9868F7AD401 0002/0002 2025-10-21T15:56:48.828791 codethink04-arm64 UNK_CLIENT UNK_SESSION rmblast_traceback_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.17.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/rmblast_traceback_unit_test&ncbi_app_build_date=Oct+17+2025+15:26:19&ncbi_app_package_name=blast&ncbi_app_package_version=2.17.0&ncbi_app_package_date=Oct+17+2025+15:26:19&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -Running 1 test case... -584070/000/0001/RB EE38E9868F7AD401 0003/0003 2025-10-21T15:56:48.830285 codethink04-arm64 UNK_CLIENT UNK_SESSION rmblast_traceback_unit_test request-start test_name=testRMBlastTraceBack&ncbi_app_version=2.17.0&ncbi_app_sc_version=29 -584070/000/0001/R EE38E9868F7AD401 0004/0004 2025-10-21T15:56:48.830869 codethink04-arm64 UNK_CLIENT UNK_SESSION rmblast_traceback_unit_test extra ncbi_phid=EE38E9868F7AD4010000000000010001 -584070/000/0001/R EE38E9868F7AD401 0005/0005 2025-10-21T15:56:48.830893 codethink04-arm64 UNK_CLIENT UNK_SESSION rmblast_traceback_unit_test extra issued_subhit=1 -584070/000/0001/R EE38E9868F7AD401 0006/0006 2025-10-21T15:56:48.831309 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=2 -584070/000/0001/R EE38E9868F7AD401 0007/0007 2025-10-21T15:56:48.831441 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -584070/000/0001/R EE38E9868F7AD401 0008/0008 2025-10-21T15:56:48.831466 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -584070/000/0001/R EE38E9868F7AD401 0009/0009 2025-10-21T15:56:48.831477 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -584070/000/0001/R EE38E9868F7AD401 0010/0010 2025-10-21T15:56:48.831485 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -584070/000/0001/R EE38E9868F7AD401 0011/0011 2025-10-21T15:56:48.831495 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -584070/000/0001/R EE38E9868F7AD401 0012/0012 2025-10-21T15:56:48.831661 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=3 -584070/000/0001/R EE38E9868F7AD401 0013/0013 2025-10-21T15:56:48.831834 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=4 -584070/000/0001/R EE38E9868F7AD401 0014/0014 2025-10-21T15:56:48.831911 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -584070/000/0001/R EE38E9868F7AD401 0015/0015 2025-10-21T15:56:48.831929 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -584070/000/0001/R EE38E9868F7AD401 0016/0016 2025-10-21T15:56:48.831937 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -584070/000/0001/R EE38E9868F7AD401 0017/0017 2025-10-21T15:56:48.831946 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -584070/000/0001/R EE38E9868F7AD401 0018/0018 2025-10-21T15:56:48.831953 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -584070/000/0001/R EE38E9868F7AD401 0019/0019 2025-10-21T15:56:48.832014 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=5 -584070/000/0001/R EE38E9868F7AD401 0020/0020 2025-10-21T15:56:49.832401 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=6 -584070/000/0001/R EE38E9868F7AD401 0021/0021 2025-10-21T15:56:49.832542 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -584070/000/0001/R EE38E9868F7AD401 0022/0022 2025-10-21T15:56:49.832556 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -584070/000/0001/R EE38E9868F7AD401 0023/0023 2025-10-21T15:56:49.832567 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -584070/000/0001/R EE38E9868F7AD401 0024/0024 2025-10-21T15:56:49.832577 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -584070/000/0001/R EE38E9868F7AD401 0025/0025 2025-10-21T15:56:49.832587 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -584070/000/0001/R EE38E9868F7AD401 0026/0026 2025-10-21T15:56:49.832698 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=7 -584070/000/0001/R EE38E9868F7AD401 0027/0027 2025-10-21T15:56:52.333114 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=8 -584070/000/0001/R EE38E9868F7AD401 0028/0028 2025-10-21T15:56:52.333272 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -584070/000/0001/R EE38E9868F7AD401 0029/0029 2025-10-21T15:56:52.333294 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -584070/000/0001/R EE38E9868F7AD401 0030/0030 2025-10-21T15:56:52.333305 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -584070/000/0001/R EE38E9868F7AD401 0031/0031 2025-10-21T15:56:52.333315 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -584070/000/0001/R EE38E9868F7AD401 0032/0032 2025-10-21T15:56:52.333326 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -584070/000/0001/R EE38E9868F7AD401 0033/0033 2025-10-21T15:56:52.333441 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=9 -584070/000/0001/R EE38E9868F7AD401 0034/0034 2025-10-21T15:56:57.083836 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=10 -584070/000/0001/R EE38E9868F7AD401 0035/0035 2025-10-21T15:56:57.083982 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -584070/000/0001/R EE38E9868F7AD401 0036/0036 2025-10-21T15:56:57.083997 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -584070/000/0001/R EE38E9868F7AD401 0037/0037 2025-10-21T15:56:57.084008 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -584070/000/0001/R EE38E9868F7AD401 0038/0038 2025-10-21T15:56:57.084017 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -584070/000/0001/R EE38E9868F7AD401 0039/0039 2025-10-21T15:56:57.084027 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -584070/000/0001/R EE38E9868F7AD401 0040/0040 2025-10-21T15:56:57.084240 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=11 -584070/000/0001/R EE38E9868F7AD401 0041/0041 2025-10-21T15:57:05.210003 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=12 -584070/000/0001/R EE38E9868F7AD401 0042/0042 2025-10-21T15:57:05.210240 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -584070/000/0001/R EE38E9868F7AD401 0043/0043 2025-10-21T15:57:05.210285 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -584070/000/0001/R EE38E9868F7AD401 0044/0044 2025-10-21T15:57:05.210313 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -584070/000/0001/R EE38E9868F7AD401 0045/0045 2025-10-21T15:57:05.210361 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -584070/000/0001/R EE38E9868F7AD401 0046/0046 2025-10-21T15:57:05.210385 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -584070/000/0001/R EE38E9868F7AD401 0047/0047 2025-10-21T15:57:05.210606 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=13 -584070/000/0001/R EE38E9868F7AD401 0048/0048 2025-10-21T15:57:18.398872 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=14 -584070/000/0001/R EE38E9868F7AD401 0049/0049 2025-10-21T15:57:18.399122 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -584070/000/0001/R EE38E9868F7AD401 0050/0050 2025-10-21T15:57:18.399155 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -584070/000/0001/R EE38E9868F7AD401 0051/0051 2025-10-21T15:57:18.399181 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -584070/000/0001/R EE38E9868F7AD401 0052/0052 2025-10-21T15:57:18.399263 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -584070/000/0001/R EE38E9868F7AD401 0053/0053 2025-10-21T15:57:18.399287 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -584070/000/0001/R EE38E9868F7AD401 0054/0054 2025-10-21T15:57:18.399510 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=15 -584070/000/0001/R EE38E9868F7AD401 0055/0055 2025-10-21T15:57:39.181492 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=16 -584070/000/0001/R EE38E9868F7AD401 0056/0056 2025-10-21T15:57:39.181726 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -584070/000/0001/R EE38E9868F7AD401 0057/0057 2025-10-21T15:57:39.181768 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -584070/000/0001/R EE38E9868F7AD401 0058/0058 2025-10-21T15:57:39.181795 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -584070/000/0001/R EE38E9868F7AD401 0059/0059 2025-10-21T15:57:39.181819 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -584070/000/0001/R EE38E9868F7AD401 0060/0060 2025-10-21T15:57:39.181844 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -584070/000/0001/R EE38E9868F7AD401 0061/0061 2025-10-21T15:57:39.182063 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=17 -584070/000/0001/R EE38E9868F7AD401 0062/0062 2025-10-21T15:58:09.182802 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=18 -584070/000/0001/R EE38E9868F7AD401 0063/0063 2025-10-21T15:58:09.183045 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -584070/000/0001/R EE38E9868F7AD401 0064/0064 2025-10-21T15:58:09.183078 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -584070/000/0001/R EE38E9868F7AD401 0065/0065 2025-10-21T15:58:09.183106 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -584070/000/0001/R EE38E9868F7AD401 0066/0066 2025-10-21T15:58:09.183130 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -584070/000/0001/R EE38E9868F7AD401 0067/0067 2025-10-21T15:58:09.183153 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -584070/000/0001/R EE38E9868F7AD401 0068/0068 2025-10-21T15:58:09.183495 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=19 -584070/000/0001/R EE38E9868F7AD401 0069/0069 2025-10-21T15:58:39.184309 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=20 -584070/000/0001/R EE38E9868F7AD401 0070/0070 2025-10-21T15:58:39.184624 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -584070/000/0001/R EE38E9868F7AD401 0071/0071 2025-10-21T15:58:39.184662 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -584070/000/0001/R EE38E9868F7AD401 0072/0072 2025-10-21T15:58:39.184690 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -584070/000/0001/R EE38E9868F7AD401 0073/0073 2025-10-21T15:58:39.184716 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -584070/000/0001/R EE38E9868F7AD401 0074/0074 2025-10-21T15:58:39.184740 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -584070/000/0001/R EE38E9868F7AD401 0075/0075 2025-10-21T15:58:39.186653 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=21 -584070/000/0001/R EE38E9868F7AD401 0076/0076 2025-10-21T15:59:09.187530 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=22 -584070/000/0001/R EE38E9868F7AD401 0077/0077 2025-10-21T15:59:09.187788 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -584070/000/0001/R EE38E9868F7AD401 0078/0078 2025-10-21T15:59:09.187821 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -584070/000/0001/R EE38E9868F7AD401 0079/0079 2025-10-21T15:59:09.187850 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -584070/000/0001/R EE38E9868F7AD401 0080/0080 2025-10-21T15:59:09.187872 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -584070/000/0001/R EE38E9868F7AD401 0081/0081 2025-10-21T15:59:09.187895 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -584070/000/0001/R EE38E9868F7AD401 0082/0082 2025-10-21T15:59:09.188147 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=23 -584070/000/0001/R EE38E9868F7AD401 0083/0083 2025-10-21T15:59:39.188910 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=24 -584070/000/0001/R EE38E9868F7AD401 0084/0084 2025-10-21T15:59:39.189163 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4382: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -584070/000/0001/R EE38E9868F7AD401 0085/0085 2025-10-21T15:59:39.189196 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 2700: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu] Failed to connect: Unknown -584070/000/0001/R EE38E9868F7AD401 0086/0086 2025-10-21T15:59:39.189222 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(304.5) "ncbi_dispd.c", line 210: UNK_FUNC --- [ID2] Unable to create connection to network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=codethink04-arm64(127.0.1.1)&platform=aarch64-unknown-linux-gnu": Unknown -584070/000/0001/R EE38E9868F7AD401 0087/0087 2025-10-21T15:59:39.189248 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 105: UNK_FUNC --- [ID2] Service not found -584070/000/0001/R EE38E9868F7AD401 0088/0088 2025-10-21T15:59:39.189270 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 132: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -584070/000/0001/R EE38E9868F7AD401 0089/0089 2025-10-21T15:59:39.189507 codethink04-arm64 UNK_CLIENT EE38E9868F7AD401_0001SID rmblast_traceback_unit_test extra issued_subhit=25 - -Maximum execution time of 200 second(s) is exceeded - -real 200.17 -user 0.17 -sys 0.05 -Start time : 10/21/2025 15:56:48 -Stop time : 10/21/2025 16:00:08 -Load averages: 2.86 4.94 6.42 - -@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ -@@@ EXIT CODE: 143 -make[1]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds' - create-stamp debian/debhelper-build-stamp - dh_testroot -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_prep -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_installdirs -O--sourcedirectory=c\+\+ -O--with-autoreconf - debian/rules override_dh_auto_install-arch -make[1]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds' -# cp c++/BUILD/lib/*.so debian/ncbi-blast+/usr/lib/ncbi-blast+/ -cp c++/BUILD/bin/* debian/ncbi-blast+/usr/bin/ -make[1]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds' - debian/rules override_dh_auto_install-indep -make[1]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds' -echo "Nothing to do for architecture independant installs" -Nothing to do for architecture independant installs -make[1]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds' - debian/rules override_dh_install-arch -make[1]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds' -# dh_install -mv debian/ncbi-blast+/usr/bin/rpsblast debian/ncbi-blast+/usr/bin/rpsblast+ -mv debian/ncbi-blast+/usr/bin/seedtop debian/ncbi-blast+/usr/bin/seedtop+ -mv debian/ncbi-blast+/usr/bin/get_species_taxids.sh \ - debian/ncbi-blast+/usr/bin/get_species_taxids -mv debian/ncbi-blast+/usr/bin/cleanup-blastdb-volumes.py \ - debian/ncbi-blast+/usr/bin/cleanup-blastdb-volumes -mv debian/ncbi-blast+/usr/bin/legacy_blast.pl debian/ncbi-blast+/usr/bin/legacy_blast -mv debian/ncbi-blast+/usr/bin/update_blastdb.pl debian/ncbi-blast+/usr/bin/update_blastdb -sed -e '1s/$/3/' debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter.py \ - > debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter -chmod +x debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter -rm debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter.py* -rm -f debian/ncbi-blast+/usr/bin/*test* debian/ncbi-blast+/usr/bin/seqdb_demo \ - debian/ncbi-blast+/usr/bin/datatool debian/ncbi-blast+/usr/bin/run_with_lock \ - debian/ncbi-blast+/usr/bin/project_tree_builder -mkdir c++/BUILD/lib.observed -d=debian/ncbi-blast+/usr/bin; \ -while :; do \ - (for x in $d/*; do \ - readelf -d $x 2>/dev/null \ - | sed -ne 's/.*NEEDED.* \[\(.*\)]$/\1/p'; \ - done; rm -f c++/BUILD/lib.observed/*) | sort -u | while read l; do \ - [ -f debian/ncbi-blast+/usr/lib/ncbi-blast+/$l \ - -o \! -f c++/BUILD/lib/$l ] || \ - cp -av c++/BUILD/lib/$l c++/BUILD/lib.observed/; \ - done; \ - [ -n "$(ls c++/BUILD/lib.observed)" ] || break; \ - echo ------------------------------------------------------------; \ - cp -a c++/BUILD/lib.observed/* debian/ncbi-blast+/usr/lib/ncbi-blast+; \ - d=c++/BUILD/lib.observed; \ -done -'c++/BUILD/lib/libalign_format.so' -> 'c++/BUILD/lib.observed/libalign_format.so' -'c++/BUILD/lib/libblast.so' -> 'c++/BUILD/lib.observed/libblast.so' -'c++/BUILD/lib/libblastdb.so' -> 'c++/BUILD/lib.observed/libblastdb.so' -'c++/BUILD/lib/libblastdb_format.so' -> 'c++/BUILD/lib.observed/libblastdb_format.so' -'c++/BUILD/lib/libblastinput.so' -> 'c++/BUILD/lib.observed/libblastinput.so' -'c++/BUILD/lib/libgeneral.so' -> 'c++/BUILD/lib.observed/libgeneral.so' -'c++/BUILD/lib/libncbi_xloader_blastdb.so' -> 'c++/BUILD/lib.observed/libncbi_xloader_blastdb.so' -'c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so' -> 'c++/BUILD/lib.observed/libncbi_xloader_blastdb_rmt.so' -'c++/BUILD/lib/libncbi_xloader_csra.so' -> 'c++/BUILD/lib.observed/libncbi_xloader_csra.so' -'c++/BUILD/lib/libncbi_xloader_genbank.so' -> 'c++/BUILD/lib.observed/libncbi_xloader_genbank.so' -'c++/BUILD/lib/libncbi_xloader_wgs.so' -> 'c++/BUILD/lib.observed/libncbi_xloader_wgs.so' -'c++/BUILD/lib/libncbi_xreader.so' -> 'c++/BUILD/lib.observed/libncbi_xreader.so' -'c++/BUILD/lib/libncbi_xreader_id2.so' -> 'c++/BUILD/lib.observed/libncbi_xreader_id2.so' -'c++/BUILD/lib/libscoremat.so' -> 'c++/BUILD/lib.observed/libscoremat.so' -'c++/BUILD/lib/libseq.so' -> 'c++/BUILD/lib.observed/libseq.so' -'c++/BUILD/lib/libseqdb.so' -> 'c++/BUILD/lib.observed/libseqdb.so' -'c++/BUILD/lib/libseqmasks_io.so' -> 'c++/BUILD/lib.observed/libseqmasks_io.so' -'c++/BUILD/lib/libseqset.so' -> 'c++/BUILD/lib.observed/libseqset.so' -'c++/BUILD/lib/libutrtprof.so' -> 'c++/BUILD/lib.observed/libutrtprof.so' -'c++/BUILD/lib/libwritedb.so' -> 'c++/BUILD/lib.observed/libwritedb.so' -'c++/BUILD/lib/libxalgoblastdbindex.so' -> 'c++/BUILD/lib.observed/libxalgoblastdbindex.so' -'c++/BUILD/lib/libxalgodustmask.so' -> 'c++/BUILD/lib.observed/libxalgodustmask.so' -'c++/BUILD/lib/libxalgosegmask.so' -> 'c++/BUILD/lib.observed/libxalgosegmask.so' -'c++/BUILD/lib/libxalgowinmask.so' -> 'c++/BUILD/lib.observed/libxalgowinmask.so' -'c++/BUILD/lib/libxblast.so' -> 'c++/BUILD/lib.observed/libxblast.so' -'c++/BUILD/lib/libxblastformat.so' -> 'c++/BUILD/lib.observed/libxblastformat.so' -'c++/BUILD/lib/libxcompress.so' -> 'c++/BUILD/lib.observed/libxcompress.so' -'c++/BUILD/lib/libxconnect.so' -> 'c++/BUILD/lib.observed/libxconnect.so' -'c++/BUILD/lib/libxncbi.so' -> 'c++/BUILD/lib.observed/libxncbi.so' -'c++/BUILD/lib/libxnetblast.so' -> 'c++/BUILD/lib.observed/libxnetblast.so' -'c++/BUILD/lib/libxobjmgr.so' -> 'c++/BUILD/lib.observed/libxobjmgr.so' -'c++/BUILD/lib/libxobjread.so' -> 'c++/BUILD/lib.observed/libxobjread.so' -'c++/BUILD/lib/libxobjutil.so' -> 'c++/BUILD/lib.observed/libxobjutil.so' -'c++/BUILD/lib/libxser.so' -> 'c++/BUILD/lib.observed/libxser.so' -'c++/BUILD/lib/libxutil.so' -> 'c++/BUILD/lib.observed/libxutil.so' ------------------------------------------------------------- -'c++/BUILD/lib/libbiblio.so' -> 'c++/BUILD/lib.observed/libbiblio.so' -'c++/BUILD/lib/libblast_services.so' -> 'c++/BUILD/lib.observed/libblast_services.so' -'c++/BUILD/lib/libblastxml.so' -> 'c++/BUILD/lib.observed/libblastxml.so' -'c++/BUILD/lib/libblastxml2.so' -> 'c++/BUILD/lib.observed/libblastxml2.so' -'c++/BUILD/lib/libcomposition_adjustment.so' -> 'c++/BUILD/lib.observed/libcomposition_adjustment.so' -'c++/BUILD/lib/libgenome_collection.so' -> 'c++/BUILD/lib.observed/libgenome_collection.so' -'c++/BUILD/lib/libid1.so' -> 'c++/BUILD/lib.observed/libid1.so' -'c++/BUILD/lib/libid2.so' -> 'c++/BUILD/lib.observed/libid2.so' -'c++/BUILD/lib/libncbi_xreader_cache.so' -> 'c++/BUILD/lib.observed/libncbi_xreader_cache.so' -'c++/BUILD/lib/libncbi_xreader_id1.so' -> 'c++/BUILD/lib.observed/libncbi_xreader_id1.so' -'c++/BUILD/lib/libpsg_client.so' -> 'c++/BUILD/lib.observed/libpsg_client.so' -'c++/BUILD/lib/libpub.so' -> 'c++/BUILD/lib.observed/libpub.so' -'c++/BUILD/lib/libseqcode.so' -> 'c++/BUILD/lib.observed/libseqcode.so' -'c++/BUILD/lib/libseqedit.so' -> 'c++/BUILD/lib.observed/libseqedit.so' -'c++/BUILD/lib/libseqsplit.so' -> 'c++/BUILD/lib.observed/libseqsplit.so' -'c++/BUILD/lib/libsequtil.so' -> 'c++/BUILD/lib.observed/libsequtil.so' -'c++/BUILD/lib/libsqlitewrapp.so' -> 'c++/BUILD/lib.observed/libsqlitewrapp.so' -'c++/BUILD/lib/libsraread.so' -> 'c++/BUILD/lib.observed/libsraread.so' -'c++/BUILD/lib/libsubmit.so' -> 'c++/BUILD/lib.observed/libsubmit.so' -'c++/BUILD/lib/libtables.so' -> 'c++/BUILD/lib.observed/libtables.so' -'c++/BUILD/lib/libtaxon1.so' -> 'c++/BUILD/lib.observed/libtaxon1.so' -'c++/BUILD/lib/libxalnmgr.so' -> 'c++/BUILD/lib.observed/libxalnmgr.so' -'c++/BUILD/lib/libxcgi.so' -> 'c++/BUILD/lib.observed/libxcgi.so' -'c++/BUILD/lib/libxformat.so' -> 'c++/BUILD/lib.observed/libxformat.so' -'c++/BUILD/lib/libxhtml.so' -> 'c++/BUILD/lib.observed/libxhtml.so' -'c++/BUILD/lib/libxlogging.so' -> 'c++/BUILD/lib.observed/libxlogging.so' -'c++/BUILD/lib/libxnetblastcli.so' -> 'c++/BUILD/lib.observed/libxnetblastcli.so' -'c++/BUILD/lib/libzcf.so' -> 'c++/BUILD/lib.observed/libzcf.so' ------------------------------------------------------------- -'c++/BUILD/lib/libgbseq.so' -> 'c++/BUILD/lib.observed/libgbseq.so' -'c++/BUILD/lib/libmedline.so' -> 'c++/BUILD/lib.observed/libmedline.so' -'c++/BUILD/lib/libvalid.so' -> 'c++/BUILD/lib.observed/libvalid.so' -'c++/BUILD/lib/libxcleanup.so' -> 'c++/BUILD/lib.observed/libxcleanup.so' -'c++/BUILD/lib/libxconnserv.so' -> 'c++/BUILD/lib.observed/libxconnserv.so' -'c++/BUILD/lib/libxxconnect2.so' -> 'c++/BUILD/lib.observed/libxxconnect2.so' ------------------------------------------------------------- -'c++/BUILD/lib/libefetch.so' -> 'c++/BUILD/lib.observed/libefetch.so' -'c++/BUILD/lib/libpubmed.so' -> 'c++/BUILD/lib.observed/libpubmed.so' -'c++/BUILD/lib/libtaxon3.so' -> 'c++/BUILD/lib.observed/libtaxon3.so' -'c++/BUILD/lib/libxobjedit.so' -> 'c++/BUILD/lib.observed/libxobjedit.so' -'c++/BUILD/lib/libxregexp.so' -> 'c++/BUILD/lib.observed/libxregexp.so' -'c++/BUILD/lib/libxthrserv.so' -> 'c++/BUILD/lib.observed/libxthrserv.so' ------------------------------------------------------------- -'c++/BUILD/lib/libeutils.so' -> 'c++/BUILD/lib.observed/libeutils.so' ------------------------------------------------------------- -'c++/BUILD/lib/libegquery.so' -> 'c++/BUILD/lib.observed/libegquery.so' -'c++/BUILD/lib/libehistory.so' -> 'c++/BUILD/lib.observed/libehistory.so' -'c++/BUILD/lib/libeinfo.so' -> 'c++/BUILD/lib.observed/libeinfo.so' -'c++/BUILD/lib/libelink.so' -> 'c++/BUILD/lib.observed/libelink.so' -'c++/BUILD/lib/libepost.so' -> 'c++/BUILD/lib.observed/libepost.so' -'c++/BUILD/lib/libesearch.so' -> 'c++/BUILD/lib.observed/libesearch.so' -'c++/BUILD/lib/libespell.so' -> 'c++/BUILD/lib.observed/libespell.so' -'c++/BUILD/lib/libesummary.so' -> 'c++/BUILD/lib.observed/libesummary.so' -'c++/BUILD/lib/libuilist.so' -> 'c++/BUILD/lib.observed/libuilist.so' ------------------------------------------------------------- -make[1]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds' - debian/rules override_dh_install-indep -make[1]: Entering directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds' -#if test -d debian/ncbi-blast+-legacy/usr/bin; then cp debian/legacy/legacy.sh debian/ncbi-blast+-legacy/usr/bin/; fi -for x in blastall megablast blastpgp bl2seq rpsblast fastacmd formatdb \ - seedtop; do \ - sed -e "s/.{.*}/$x/" debian/legacy/legacy.sh > debian/ncbi-blast+-legacy/usr/bin/$x; \ - chmod +x debian/ncbi-blast+-legacy/usr/bin/$x; \ -done -make[1]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.17.0+ds' - dh_installdocs -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_installchangelogs -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_installexamples -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_installman -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_installsystemduser -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_lintian -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_perl -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_link -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_strip_nondeterminism -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_compress -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_fixperms -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_missing -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_dwz -a -O--sourcedirectory=c\+\+ -O--with-autoreconf -dwz: debian/ncbi-blast+/usr/lib/ncbi-blast+/libzcf.so: DWARF compression not beneficial - old size 55187 new size 55828 - dh_strip -a -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_makeshlibs -a -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_shlibdeps -a -O--sourcedirectory=c\+\+ -O--with-autoreconf -dpkg-shlibdeps: warning: diversions involved - output may be incorrect - diversion by libc6 from: /lib/ld-linux-aarch64.so.1 -dpkg-shlibdeps: warning: diversions involved - output may be incorrect - diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcleanup.so was not linked against libpubmed.so (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcleanup.so was not linked against libefetch.so (it uses none of the library's symbols) - dh_installdeb -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_gencontrol -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_md5sums -O--sourcedirectory=c\+\+ -O--with-autoreconf - dh_builddeb -O--sourcedirectory=c\+\+ -O--with-autoreconf -dpkg-deb: building package 'ncbi-blast+-dbgsym' in '../ncbi-blast+-dbgsym_2.17.0+ds-6_arm64.deb'. -dpkg-deb: building package 'ncbi-blast+' in '../ncbi-blast+_2.17.0+ds-6_arm64.deb'. -dpkg-deb: building package 'ncbi-blast+-legacy' in '../ncbi-blast+-legacy_2.17.0+ds-6_all.deb'. - dpkg-genbuildinfo --build=binary -O../ncbi-blast+_2.17.0+ds-6_arm64.buildinfo - dpkg-genchanges --build=binary -O../ncbi-blast+_2.17.0+ds-6_arm64.changes -dpkg-genchanges: info: binary-only upload (no source code included) - dpkg-source --after-build . -dpkg-source: info: using options from ncbi-blast+-2.17.0+ds/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ -dpkg-buildpackage: info: binary-only upload (no source included) -dpkg-genchanges: info: not including original source code in upload +make[5]: *** [/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.rules:103: blast_format_unit_test.o] Terminated +make[2]: *** [Makefile.flat:442: ptb_all] Terminated +/blast_format/blast_format_unit_test.cpp -o blast_format_unit_test.o +make[1]: *** [debian/rules:113: override_dh_auto_build-arch] Terminated +make: *** wait: No child processes. Stop. +make: *** Waiting for unfinished jobs.... +make: *** wait: No child processes. Stop. I: copying local configuration +E: Failed autobuilding of package +I: user script /srv/workspace/pbuilder/840742/tmp/hooks/C01_cleanup starting +debug output: disk usage on i-capture-the-hostname at Mon Nov 23 23:11:49 UTC 2026 +Filesystem Size Used Avail Use% Mounted on +tmpfs 16G 0 16G 0% /dev/shm + +I: user script /srv/workspace/pbuilder/840742/tmp/hooks/C01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem +W: Stray processes left from build: +* system-pbuilder-build-ncbi\x2dblast\x2b_2.17.0\x2bds\x2d6-840742.slice - Slice /system/pbuilder/build/ncbi-blast+_2.17.0+ds-6/840742 + Loaded: loaded + Active: active since Tue 2026-11-24 12:32:56 +14; 38min ago + Invocation: 487320a07fed49f9aa9747a83e346b37 + Tasks: 16 + Memory: 7G (peak: 13.3G, swap: 2.6G, swap peak: 2.6G) + CPU: 2h 17min 58.112s + CGroup: /system.slice/system-pbuilder.slice/system-pbuilder-build.slice/system-pbuilder-build-ncbi\x2dblast\x2b_2.17.0\x2bds\x2d6.slice/system-pbuilder-build-ncbi\x2dblast\x2b_2.17.0\x2bds\x2d6-840742.slice + `-run-p853870-i46987825.scope + |-1256577 "[cc1plus]" + |-1262334 "[cc1plus]" + |-1262373 "[cc1plus]" + |-1262476 "[cc1plus]" + |-1263749 "[cc1plus]" + |-1263796 "[cc1plus]" + |-1264327 "[cc1plus]" + |-1265209 "[cc1plus]" + |-1265658 /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock -getter /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/get_lock.sh -reviewer /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/is_log_interesting.awk -base make_blastdb_convert -log make_blastdb_convert.log -map /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/.#lock-map "!" /usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb TMPL=blastdb_convert --jobserver-auth=fifo:/tmp/GMfifo1045688 all + |-1265661 /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock -getter /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/get_lock.sh -reviewer /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/is_log_interesting.awk -base make_bl2seq_unit_test -log make_bl2seq_unit_test.log -map /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api/.#lock-map "!" /usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test --jobserver-auth=fifo:/tmp/GMfifo1045688 all + |-1265662 /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock -getter /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/get_lock.sh -reviewer /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/is_log_interesting.awk -base make_rpsblast -log make_rpsblast.log -map /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/.#lock-map "!" /usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast TMPL=rpsblast --jobserver-auth=fifo:/tmp/GMfifo1045688 all + |-1265668 /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock -getter /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/get_lock.sh -reviewer /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/is_log_interesting.awk -base make_blastdb_aliastool -log make_blastdb_aliastool.log -map /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb/.#lock-map "!" /usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blastdb TMPL=blastdb_aliastool --jobserver-auth=fifo:/tmp/GMfifo1045688 all + |-1265674 /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock -getter /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/get_lock.sh -reviewer /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/is_log_interesting.awk -base make_blastx -log make_blastx.log -map /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/.#lock-map "!" /usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast TMPL=blastx --jobserver-auth=fifo:/tmp/GMfifo1045688 all + |-1265675 /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock -getter /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/get_lock.sh -reviewer /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/is_log_interesting.awk -base make_rpstblastn -log make_rpstblastn.log -map /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/.#lock-map "!" /usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast TMPL=rpstblastn --jobserver-auth=fifo:/tmp/GMfifo1045688 all + |-1265676 /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock -getter /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/get_lock.sh -reviewer /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/is_log_interesting.awk -base make_tblastn -log make_tblastn.log -map /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast/.#lock-map "!" /usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/app/blast TMPL=tblastn --jobserver-auth=fifo:/tmp/GMfifo1045688 all + `-1265677 /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/bin/run_with_lock -getter /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/get_lock.sh -reviewer /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/scripts/common/impl/is_log_interesting.awk -base make_blast_format_unit_test -log make_blast_format_unit_test.log "!" /usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.17.0+ds/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test --jobserver-auth=fifo:/tmp/GMfifo1045688 all + +Nov 24 12:32:56 codethink03-arm64 systemd[1]: Created slice system-pbuilder-build-ncbi\x2dblast\x2b_2.17.0\x2bds\x2d6-840742.slice - Slice /system/pbuilder/build/ncbi-blast+_2.17.0+ds-6/840742. I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3513907 and its subdirectories -I: Current time: Tue Oct 21 04:04:01 -12 2025 -I: pbuilder-time-stamp: 1761062641 +I: removing directory /srv/workspace/pbuilder/840742 and its subdirectories