Diff of the two buildlogs: -- --- b1/build.log 2025-10-24 08:37:00.362019681 +0000 +++ b2/build.log 2025-10-24 08:42:49.050439401 +0000 @@ -1,6 +1,7 @@ +W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build -I: Current time: Thu Oct 23 20:34:48 -12 2025 -I: pbuilder-time-stamp: 1761294888 +I: Current time: Fri Nov 27 05:01:21 +14 2026 +I: pbuilder-time-stamp: 1795705281 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -26,53 +27,84 @@ dpkg-source: info: applying use_system_gzstream.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4108815/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2994886/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 26 15:01 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2994886/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2994886/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='4ca9963b58f14b77a1eb00bad6ec81a8' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4108815' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2994886 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LRGKuOn2/pbuilderrc_iBRP --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LRGKuOn2/b1 --logfile b1/build.log mmseqs2_18-8cc5c+ds-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LRGKuOn2/pbuilderrc_ivZF --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LRGKuOn2/b2 --logfile b2/build.log mmseqs2_18-8cc5c+ds-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4108815/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2994886/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -195,7 +227,7 @@ Get: 67 http://deb.debian.org/debian forky/main arm64 libxxhash-dev arm64 0.8.3-2 [82.6 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [330 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] -Fetched 31.0 MB in 0s (168 MB/s) +Fetched 31.0 MB in 0s (128 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20002 files and directories currently installed.) @@ -486,7 +518,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mmseqs2_18-8cc5c+ds-1_source.changes +I: user script /srv/workspace/pbuilder/2994886/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/2994886/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mmseqs2_18-8cc5c+ds-1_source.changes dpkg-buildpackage: info: source package mmseqs2 dpkg-buildpackage: info: source version 18-8cc5c+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -546,7 +582,7 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (4.1s) +-- Configuring done (3.2s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -573,140 +609,143 @@ make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend -make -f lib/tantan/CMakeFiles/tantan.dir/build.make lib/tantan/CMakeFiles/tantan.dir/depend -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend -make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend -make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-18-8cc5c+ds /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar 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/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2/ksw2_extz2_sse.cpp +[ 4%] Generating ../generated/VTML80.out.h +[ 4%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/tinyexpr && /usr/bin/cc -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -fsigned-char -MD -MT lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -MF CMakeFiles/tinyexpr.dir/tinyexpr.c.o.d -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprob.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_dynprogprob.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true VTML80.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -MF CMakeFiles/alp.dir/njn_random.cpp.o.d -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_random.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstat.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -[ 3%] Generating ../generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide.out cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h +[ 5%] Linking CXX static library libversion.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +[ 5%] Generating ../generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true VTML40.out +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h +[ 5%] Generating ../generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide.out cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h.tmp +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h -[ 3%] Generating ../generated/blosum62.out.h -[ 4%] Linking CXX static library libversion.a -[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h.tmp +[ 5%] Generating ../generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blosum62.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatmatrix.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide.out.h +[ 5%] Built target version cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -[ 5%] Generating ../generated/PAM30.out.h +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_pvalues.cpp +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h.tmp +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alignment_evaluer.cpp +[ 6%] Generating ../generated/PAM30.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true PAM30.out cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/PAM30.out.h -[ 5%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +[ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -/usr/bin/ranlib libversion.a cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h -[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp 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Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 5%] Built target version -[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar 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lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alignment_evaluer.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 6%] Built target microtar [ 7%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h -[ 7%] Linking C static library libmicrotar.a cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -[ 8%] Generating ../generated/Library255_may17.lib.h +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_regression.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 9%] Generating ../generated/Library255_may17.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; @@ -730,7 +769,6 @@ | ^~ In function ‘new_expr’, inlined from ‘base’ at /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:366:19: -[ 8%] Built target microtar /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ @@ -743,8 +781,6 @@ /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_regression.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/Library255_may17.lib.h [ 9%] Generating ../generated/libPolished_8.lib.h @@ -759,222 +795,222 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cs219.lib.h +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp.cpp [ 10%] Generating ../generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true krona_prelude.html cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatutil.cpp [ 10%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h -[ 10%] Generating ../generated/K4000.crf.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true K4000.crf -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/K4000.crf.h -[ 11%] Linking C static library libtinyexpr.a +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_basic.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_data.cpp +[ 12%] Linking C static library libtinyexpr.a cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h.tmp /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o /usr/bin/ranlib libtinyexpr.a make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/result_viz_prelude.html.zst.h -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp.cpp -[ 11%] Built target tinyexpr -[ 11%] Generating ../generated/easysearch.sh.h +[ 12%] Built target tinyexpr +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_ioutil.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/krona_prelude.html.h +[ 13%] Generating ../generated/K4000.crf.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true K4000.crf +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/K4000.crf.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' +[ 13%] Built target ksw2 +[ 13%] Generating ../generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easysearch.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatutil.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easysearch.sh.h -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_basic.cpp -[ 12%] Generating ../generated/easycluster.sh.h +[ 13%] Generating ../generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easycluster.sh.h -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_data.cpp -[ 12%] Generating ../generated/easytaxonomy.sh.h +[ 13%] Generating ../generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_ioutil.cpp -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' -[ 13%] Built target ksw2 [ 14%] Generating ../generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easyrbh.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h [ 15%] Generating ../generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastp.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h [ 15%] Generating ../generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastpgp.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h [ 15%] Generating ../generated/map.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true map.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/map.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/map.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/map.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/map.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/map.sh.h [ 16%] Generating ../generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/map.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/map.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true rbh.sh -[ 16%] Generating ../generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linclust.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/map.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h +[ 16%] Generating ../generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linclust.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h [ 16%] Generating ../generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true clustering.sh -[ 17%] Generating ../generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h.tmp +[ 17%] Generating ../generated/cascaded_clustering.sh.h [ 18%] Generating ../generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true update_clustering.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h.tmp [ 19%] Generating ../generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchtargetprofile.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h [ 20%] Generating ../generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createindex.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h [ 20%] Generating ../generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h [ 20%] Generating ../generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true translated_search.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true translated_search.sh [ 21%] Generating ../generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h [ 22%] Generating ../generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitdb.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h [ 22%] Generating ../generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h +[ 23%] Generating ../generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true enrich.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h.tmp -[ 23%] Linking CXX static library libtantan.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated +[ 24%] Linking CXX static library libtantan.a cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/tantan && /usr/bin/cmake -P CMakeFiles/tantan.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h -[ 24%] Generating ../generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true enrich.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/lib/tantan && /usr/bin/cmake -E cmake_link_script CMakeFiles/tantan.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h [ 24%] Generating ../generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastn.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/enrich.sh.h -/usr/bin/ar qc libtantan.a CMakeFiles/tantan.dir/tantan.cpp.o -/usr/bin/ranlib libtantan.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h.tmp -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h +[ 24%] Generating ../generated/taxonomy.sh.h [ 24%] Generating ../generated/searchslicedtargetprofile.sh.h -[ 24%] Built target tantan cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h -[ 24%] Generating ../generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxonomy.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h [ 25%] Generating ../generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linsearch.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h +/usr/bin/ar qc libtantan.a CMakeFiles/tantan.dir/tantan.cpp.o +/usr/bin/ranlib libtantan.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h [ 26%] Generating ../generated/databases.sh.h -[ 26%] Generating ../generated/pickconsensusrep.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true databases.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true pickconsensusrep.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h.tmp +[ 26%] Built target tantan +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/searchslicedtargetprofile.sh.h +[ 26%] Generating ../generated/pickconsensusrep.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true pickconsensusrep.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl pickconsensusrep.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/pickconsensusrep.sh.h [ 27%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/databases.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/databases.sh.h.tmp +[ 27%] Generating ../generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide_clustering.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h +[ 27%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true iterativepp.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/pickconsensusrep.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/pickconsensusrep.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/pickconsensusrep.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/pickconsensusrep.sh.h -[ 27%] Generating ../generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true iterativepp.sh -[ 27%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true tsv2exprofiledb.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/databases.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/databases.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/iterativepp.sh.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' [ 27%] Built target alp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated/K4000.crf.h.tmp @@ -987,25 +1023,25 @@ make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu' -[ 27%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -[ 27%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o [ 27%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o +[ 27%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o +[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -cd 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char 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-DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit 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cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering 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/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2stats.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated 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-fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/cpmvrmlndb.cpp +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp 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-fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/extractframes.cpp In file included from /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/pairaln.cpp:3: In copy constructor ‘Matcher::result_t::result_t(const Matcher::result_t&)’, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Matcher::result_t; _Args = {const Matcher::result_t&}; _Tp = Matcher::result_t]’ at /usr/include/c++/15/bits/new_allocator.h:191:4, @@ -1427,12 +1469,6 @@ /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/pairaln.cpp:345:81: note: ‘’ declared here 345 | compatible.resize(resultPerId.size(), Matcher::result_t()); | ^ -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd 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src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o @@ -1470,11 +1506,11 @@ [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/unpackdb.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 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-std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/proteinaln2nucl.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/proteinaln2nucl.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/versionstring.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/diskspaceavail.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/versionstring.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/Cluster.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o @@ -1508,8 +1544,8 @@ [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/EasyTaxonomy.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/CreateIndex.cpp [ 99%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/CreateIndex.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/MMseqsBase.cpp [ 99%] Linking CXX static library libmmseqs-framework.a cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/obj-aarch64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/mmseqs-framework.dir/cmake_clean_target.cmake @@ -1600,8 +1636,8 @@ make[1]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds' dh_md5sums dh_builddeb -dpkg-deb: building package 'mmseqs2' in '../mmseqs2_18-8cc5c+ds-1_arm64.deb'. dpkg-deb: building package 'mmseqs2-dbgsym' in '../mmseqs2-dbgsym_18-8cc5c+ds-1_arm64.deb'. +dpkg-deb: building package 'mmseqs2' in '../mmseqs2_18-8cc5c+ds-1_arm64.deb'. dpkg-deb: building package 'mmseqs2-examples' in '../mmseqs2-examples_18-8cc5c+ds-1_all.deb'. dpkg-genbuildinfo --build=binary -O../mmseqs2_18-8cc5c+ds-1_arm64.buildinfo dpkg-genchanges --build=binary -O../mmseqs2_18-8cc5c+ds-1_arm64.changes @@ -1610,12 +1646,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2994886/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2994886/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4108815 and its subdirectories -I: Current time: Thu Oct 23 20:36:59 -12 2025 -I: pbuilder-time-stamp: 1761295019 +I: removing directory /srv/workspace/pbuilder/2994886 and its subdirectories +I: Current time: Fri Nov 27 05:05:49 +14 2026 +I: pbuilder-time-stamp: 1795705549